AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374480 MtrunA17_Chr3g0124941 90.986 355 20 1 1 343 11 365 0.0 628
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374480 AT1G21710.1 61.280 328 108 4 16 330 18 339 9.61e-141 405

Find 176 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTCAAGTGTTTATTTAAA+TGG 0.140391 3_1:+73949218 None:intergenic
AAGGCAAAGCCTCTTTAATT+AGG 0.181173 3_1:+73949171 None:intergenic
TCGTCTCTTGGGACTTATTT+AGG 0.186122 3_1:-73951472 Msa0374480:CDS
CGGGTTTGGGTTTGGGGTGT+TGG 0.199325 3_1:+73951934 None:intergenic
GGAGTGGCGGGTTTGGGTTT+GGG 0.225556 3_1:+73951927 None:intergenic
TTTGAGATTAATAGGGATTC+TGG 0.226250 3_1:-73949523 Msa0374480:three_prime_UTR
TGGAGTGGCGGGTTTGGGTT+TGG 0.232265 3_1:+73951926 None:intergenic
GGGTTTGGGTTTGGGGTGTT+GGG 0.248606 3_1:+73951935 None:intergenic
GAGTGGCGGGTTTGGGTTTG+GGG 0.249611 3_1:+73951928 None:intergenic
GTTGGTGGAGTGGCGGGTTT+GGG 0.259029 3_1:+73951921 None:intergenic
GGTTGGTGGAGTGGCGGGTT+TGG 0.265429 3_1:+73951920 None:intergenic
CGATGAAAGATTTGCGGAAC+TGG 0.268100 3_1:-73951611 Msa0374480:CDS
CAACTAAGAGACGCTGGTTT+TGG 0.300884 3_1:-73951382 Msa0374480:CDS
GGTTTGGGTTTGGGGTGTTG+GGG 0.318307 3_1:+73951936 None:intergenic
GCTATACAAGCAGCCACTTT+AGG 0.318798 3_1:+73951133 None:intergenic
AGGCAAAGCCTCTTTAATTA+GGG 0.319272 3_1:+73949172 None:intergenic
TCTGCATCTTTCCTCTTCAT+TGG 0.332210 3_1:-73949293 Msa0374480:three_prime_UTR
GTTGATTACGTTTCGTCTCT+TGG 0.337618 3_1:-73951484 Msa0374480:CDS
CTGCATCTTTCCTCTTCATT+GGG 0.343108 3_1:-73949292 Msa0374480:three_prime_UTR
TATTAGTAGAATCACGAAAA+TGG 0.343310 3_1:-73951506 Msa0374480:CDS
GCTCGGGTAAGATATACTTT+TGG 0.347590 3_1:+73950327 None:intergenic
TCTTGTCATATGGCAAGAAA+TGG 0.356013 3_1:+73949253 None:intergenic
CTCTGTGTCAATTGAAGGTT+AGG 0.356639 3_1:+73949793 None:intergenic
AGCCATTCTTCCCCACCTTC+AGG 0.363722 3_1:+73951223 None:intergenic
ATCTACGGGTTGTGAGTCTA+AGG 0.373502 3_1:-73949995 Msa0374480:CDS
GGTGTTGAAGGTGGAAGAGG+AGG 0.385734 3_1:+73951958 None:intergenic
TATATCTTACCCGAGCTTGC+AGG 0.389581 3_1:-73950320 Msa0374480:CDS
TCCACCTCTGTGTCAATTGA+AGG 0.400807 3_1:+73949788 None:intergenic
CGCCAAACATGAACATCAAC+AGG 0.405155 3_1:+73951079 None:intergenic
AATCATCGTTGGAGGAAGAT+TGG 0.405715 3_1:+73951707 None:intergenic
TTGAGATTAATAGGGATTCT+GGG 0.408606 3_1:-73949522 Msa0374480:three_prime_UTR
TTGATTACGTTTCGTCTCTT+GGG 0.411601 3_1:-73951483 Msa0374480:CDS
TTCCTGTTGATGTTCATGTT+TGG 0.414571 3_1:-73951081 Msa0374480:CDS
GATAGGGCTAAATATATAAC+TGG 0.417698 3_1:-73951271 Msa0374480:intron
GTTTGGGTTTGGGGTGTTGG+GGG 0.421911 3_1:+73951937 None:intergenic
GTTGAAGGTGGAAGAGGAGG+AGG 0.423691 3_1:+73951961 None:intergenic
TGAGAGGTTGGTGGAGTGGC+GGG 0.427172 3_1:+73951915 None:intergenic
TCTCAATTCACCGGCGTCGT+TGG 0.434809 3_1:-73951790 Msa0374480:CDS
TGCCGAGTTGCCTTCACAAA+AGG 0.436422 3_1:-73950201 Msa0374480:CDS
AGGACCAACTCCAGGTAACT+TGG 0.437622 3_1:+73951153 None:intergenic
AGCCTGAAGGTGGGGAAGAA+TGG 0.438759 3_1:-73951225 Msa0374480:CDS
GAAAACACAGAATCATAGTA+AGG 0.439074 3_1:+73949558 None:intergenic
TGACACGTGGAAGGTGTTCT+CGG 0.441693 3_1:-73951638 Msa0374480:CDS
AATCAAATGCAAGGAATTTG+TGG 0.442011 3_1:+73949346 None:intergenic
GAAGTAAACGATGAAATTGT+TGG 0.445595 3_1:+73949413 None:intergenic
CGCAACATTTGAGTGGTGCT+AGG 0.448095 3_1:-73951588 Msa0374480:CDS
CAACTTGGAACCTGCAAGCT+CGG 0.455192 3_1:+73950310 None:intergenic
CCTCCTACCTTTACACTTGA+GGG 0.458910 3_1:-73950177 Msa0374480:CDS
ATCATCGTTGGAGGAAGATT+GGG 0.467004 3_1:+73951708 None:intergenic
TTGCTTGATTTCTTAAACGC+CGG 0.472258 3_1:-73951673 Msa0374480:CDS
AGGAGGAGGTAGTGATTTGG+TGG 0.473290 3_1:+73951975 None:intergenic
AGAGGTGGACAATGAACTAT+TGG 0.473746 3_1:+73949376 None:intergenic
ACATGGAAGATGAACTTTGT+TGG 0.476317 3_1:-73949688 Msa0374480:three_prime_UTR
AAGAGGAGGAGGTAGTGATT+TGG 0.478738 3_1:+73951972 None:intergenic
AGGTAAGGATAGTTCTTGTC+GGG 0.479365 3_1:+73951861 None:intergenic
TCGATTAGAGTGAGATCTAC+GGG 0.481392 3_1:-73950009 Msa0374480:intron
CTTGTCATATGGCAAGAAAT+GGG 0.482285 3_1:+73949254 None:intergenic
CAGCGGAAGGTTTGACCGGT+GGG 0.483622 3_1:+73951829 None:intergenic
ACTTATTTAGGTGAAGTTGA+AGG 0.484673 3_1:-73951460 Msa0374480:CDS
GAAGGTTTGACCGGTGGGGA+AGG 0.484925 3_1:+73951834 None:intergenic
ACCTCTCAATATCCCGGGTA+TGG 0.484937 3_1:-73951900 Msa0374480:CDS
GTGAAGTTTCTGTGTCAACT+TGG 0.485616 3_1:+73950295 None:intergenic
CTTTGCGGGATTCTTCTGCT+TGG 0.488513 3_1:+73950151 None:intergenic
ACAGACCAGGGGAGAATTCA+CGG 0.493443 3_1:-73949479 Msa0374480:three_prime_UTR
GCTTTATTCTCTTCGCACAT+TGG 0.497338 3_1:-73951203 Msa0374480:CDS
TGAACTCTTAGTAGAAATCA+TGG 0.498516 3_1:-73949762 Msa0374480:three_prime_UTR
AACAATGGACATGGACATGC+AGG 0.499886 3_1:+73949443 None:intergenic
GCGATACACGCTGGAGACTC+AGG 0.502315 3_1:-73949973 Msa0374480:CDS
CTGTTGATGTTCATGTTTGG+CGG 0.502808 3_1:-73951078 Msa0374480:CDS
TTGAGAGGTTGGTGGAGTGG+CGG 0.503046 3_1:+73951914 None:intergenic
TGACTTAGTCGTTGCGAACA+TGG 0.512375 3_1:-73949705 Msa0374480:three_prime_UTR
GTTCAGAAACTAATGAAAGC+TGG 0.515793 3_1:+73951407 None:intergenic
AACTTGGAACCTGCAAGCTC+GGG 0.516598 3_1:+73950311 None:intergenic
CTTTCCAAGTTACCTGGAGT+TGG 0.517490 3_1:-73951157 Msa0374480:CDS
GGCAAAGCCTCTTTAATTAG+GGG 0.518002 3_1:+73949173 None:intergenic
GAGGTAAGGATAGTTCTTGT+CGG 0.518734 3_1:+73951860 None:intergenic
GAAGATGTTTGAGGGAAATG+AGG 0.519541 3_1:+73951761 None:intergenic
TGGAGGAAGATTGGGAGTGA+AGG 0.520487 3_1:+73951716 None:intergenic
TTTCCAGCGGAAGGTTTGAC+CGG 0.521741 3_1:+73951825 None:intergenic
CCCTCCTACCTTTACACTTG+AGG 0.524416 3_1:-73950178 Msa0374480:CDS
TAAAACAGCTTGAGCCCAGC+CGG 0.524454 3_1:+73950229 None:intergenic
CTTATTTAGGTGAAGTTGAA+GGG 0.524953 3_1:-73951459 Msa0374480:CDS
TCCCTCAAACATCTTCAAAA+CGG 0.526912 3_1:-73951754 Msa0374480:CDS
AGTGAAGATGCAAACAGACC+AGG 0.528198 3_1:-73949492 Msa0374480:three_prime_UTR
CCACCAACCTCTCAATATCC+CGG 0.529694 3_1:-73951906 Msa0374480:CDS
TGTTGAGAGGGATCCATACC+CGG 0.530592 3_1:+73951887 None:intergenic
AGTATGGTAAATATGCCGGC+TGG 0.531143 3_1:-73950244 Msa0374480:CDS
TTCGATTAGAGTGAGATCTA+CGG 0.532966 3_1:-73950010 Msa0374480:intron
CCCTCAAGTGTAAAGGTAGG+AGG 0.533406 3_1:+73950177 None:intergenic
AGAGGTGGACAGTGAACTAC+TGG 0.535788 3_1:-73949732 Msa0374480:three_prime_UTR
GTGAAGATGCAAACAGACCA+GGG 0.536514 3_1:-73949491 Msa0374480:three_prime_UTR
GTGTTTCTCTTGCTGACACG+TGG 0.537150 3_1:-73951651 Msa0374480:CDS
ACAAAGTATGGTAAATATGC+CGG 0.537281 3_1:-73950248 Msa0374480:CDS
TCTTGTCGGGTTATGTTGAG+AGG 0.537793 3_1:+73951874 None:intergenic
CCAGCGGAAGGTTTGACCGG+TGG 0.538070 3_1:+73951828 None:intergenic
GAGTGATGAATGAGGGGTGC+AGG 0.538801 3_1:-73949850 Msa0374480:three_prime_UTR
GCAACATTTGAGTGGTGCTA+GGG 0.540107 3_1:-73951587 Msa0374480:intron
GAAAACAGCAAAGAAGAAGC+TGG 0.540644 3_1:-73950122 Msa0374480:intron
ATGTTTGAGGGAAATGAGGT+GGG 0.544232 3_1:+73951765 None:intergenic
CCACCGGTCAAACCTTCCGC+TGG 0.544466 3_1:-73951828 Msa0374480:CDS
GGAGGAAGATTGGGAGTGAA+GGG 0.545846 3_1:+73951717 None:intergenic
TCTGAACTTTCCAAGTTACC+TGG 0.547907 3_1:-73951163 Msa0374480:CDS
TACCCGGGATATTGAGAGGT+TGG 0.548985 3_1:+73951903 None:intergenic
GGATTCCGATGAAAGATTTG+CGG 0.549689 3_1:-73951617 Msa0374480:CDS
TGAACTATTGGCGGAAGACA+TGG 0.552387 3_1:+73949388 None:intergenic
CTCCAACGATGATTGCAAAA+CGG 0.557394 3_1:-73951698 Msa0374480:CDS
AATATCCGTGAATTCTCCCC+TGG 0.557723 3_1:+73949474 None:intergenic
TGCAATCAAAGCCTGAAGGT+GGG 0.559250 3_1:-73951234 Msa0374480:CDS
GCAATCAAAGCCTGAAGGTG+GGG 0.559780 3_1:-73951233 Msa0374480:CDS
CCGGGATATTGAGAGGTTGG+TGG 0.559983 3_1:+73951906 None:intergenic
CAGTTCCGCAAATCTTTCAT+CGG 0.560607 3_1:+73951612 None:intergenic
ATATTGAGAGGTTGGTGGAG+TGG 0.561647 3_1:+73951911 None:intergenic
TGTTGATGTTCATGTTTGGC+GGG 0.563445 3_1:-73951077 Msa0374480:intron
TTTGTTGGCAGAGTAAATAG+TGG 0.564187 3_1:-73949673 Msa0374480:three_prime_UTR
ACCTGGAGTTGGTCCTAAAG+TGG 0.565307 3_1:-73951146 Msa0374480:CDS
AATCAGCTGTGGATAGAGCA+TGG 0.567290 3_1:-73949615 Msa0374480:three_prime_UTR
CACCAACCTCTCAATATCCC+GGG 0.568986 3_1:-73951905 Msa0374480:CDS
AAATCTTTCTCCCAATGAAG+AGG 0.569398 3_1:+73949282 None:intergenic
GGTGGGGAAGGTGAGAGGTA+AGG 0.569427 3_1:+73951846 None:intergenic
TCTGAAACTAATCAAATGCA+AGG 0.569641 3_1:+73949337 None:intergenic
GAGTCTAAGGCGATACACGC+TGG 0.570449 3_1:-73949982 Msa0374480:CDS
TTGCAATCAAAGCCTGAAGG+TGG 0.570829 3_1:-73951235 Msa0374480:CDS
GTATGGTAAATATGCCGGCT+GGG 0.571044 3_1:-73950243 Msa0374480:CDS
GGCAGAGTAAATAGTGGAGA+TGG 0.572053 3_1:-73949667 Msa0374480:three_prime_UTR
GGTGGACAATGAACTATTGG+CGG 0.574550 3_1:+73949379 None:intergenic
TGACCGGTGGGGAAGGTGAG+AGG 0.575831 3_1:+73951841 None:intergenic
TTACCTCTCACCTTCCCCAC+CGG 0.576560 3_1:-73951844 Msa0374480:CDS
CTTGTCGGGTTATGTTGAGA+GGG 0.578835 3_1:+73951875 None:intergenic
AATGAAAGCTGGTTCAGAGT+AGG 0.581488 3_1:+73951418 None:intergenic
CAAGATATTGAGATAAAACA+TGG 0.581652 3_1:-73949934 Msa0374480:CDS
GTAAACGATGAAATTGTTGG+AGG 0.583257 3_1:+73949416 None:intergenic
GATTAATAGGGATTCTGGGA+TGG 0.591149 3_1:-73949518 Msa0374480:three_prime_UTR
TTCTCTTGCTGACACGTGGA+AGG 0.591357 3_1:-73951647 Msa0374480:CDS
TTGGTGTCCCTCAAGTGTAA+AGG 0.593031 3_1:+73950170 None:intergenic
ACTTCACAGTCGTGTTGCAG+AGG 0.596405 3_1:-73950279 Msa0374480:CDS
AACATGAACATCAACAGGAA+TGG 0.597125 3_1:+73951084 None:intergenic
AAAACACAGAATCATAGTAA+GGG 0.599703 3_1:+73949559 None:intergenic
GTTGAGAGGGATCCATACCC+GGG 0.599735 3_1:+73951888 None:intergenic
GCAAAGCCTCTTTAATTAGG+GGG 0.600600 3_1:+73949174 None:intergenic
ATCAGCTGTGGATAGAGCAT+GGG 0.603004 3_1:-73949614 Msa0374480:three_prime_UTR
AGCGGAAGGTTTGACCGGTG+GGG 0.603850 3_1:+73951830 None:intergenic
ATAATAACTTGAATCAGCTG+TGG 0.604504 3_1:-73949626 Msa0374480:three_prime_UTR
GGAGGAGGTAGTGATTTGGT+GGG 0.604507 3_1:+73951976 None:intergenic
GCCACTTTAGGACCAACTCC+AGG 0.606013 3_1:+73951145 None:intergenic
ACGACGCCGGTGAATTGAGA+AGG 0.607725 3_1:+73951793 None:intergenic
AGAAATCATGGTCGAAGCAG+AGG 0.608867 3_1:-73949750 Msa0374480:three_prime_UTR
CACTGCTGAGTGATGAATGA+GGG 0.609667 3_1:-73949857 Msa0374480:three_prime_UTR
AATAGTGGAGATGGACGTGT+AGG 0.610403 3_1:-73949658 Msa0374480:three_prime_UTR
GCCGGTGAATTGAGAAGGAG+CGG 0.615116 3_1:+73951798 None:intergenic
CCTCAAGTGTAAAGGTAGGA+GGG 0.619016 3_1:+73950178 None:intergenic
AATCATGGTCGAAGCAGAGG+TGG 0.620518 3_1:-73949747 Msa0374480:three_prime_UTR
ACCTTCAATTGACACAGAGG+TGG 0.630220 3_1:-73949789 Msa0374480:three_prime_UTR
GAACAGCAACTAAGAGACGC+TGG 0.630534 3_1:-73951388 Msa0374480:CDS
ACCGCTCCTTCTCAATTCAC+CGG 0.631136 3_1:-73951799 Msa0374480:CDS
GAGGTGGGAGCCAACGACGC+CGG 0.631246 3_1:+73951780 None:intergenic
ATTGTTGGAGGATAAAACAA+TGG 0.631511 3_1:+73949428 None:intergenic
ATTTGTGGCTGACACAGAGG+TGG 0.641157 3_1:+73949361 None:intergenic
TCCATACCCGGGATATTGAG+AGG 0.641356 3_1:+73951899 None:intergenic
GATGTTTGAGGGAAATGAGG+TGG 0.643569 3_1:+73951764 None:intergenic
CGTGTCAGCAAGAGAAACAC+CGG 0.651572 3_1:+73951654 None:intergenic
GAACATCAACAGGAATGGCA+TGG 0.655759 3_1:+73951089 None:intergenic
CACTGCTGAGTGATGAATGA+GGG 0.658026 3_1:-73949905 Msa0374480:exon
GCTTTGCAATCAAAGCCTGA+AGG 0.659391 3_1:-73951238 Msa0374480:CDS
AGAGAAACGCAGAACAAACA+CGG 0.665225 3_1:+73949586 None:intergenic
TGTCCCTCAAGTGTAAAGGT+AGG 0.665958 3_1:+73950174 None:intergenic
TGAAGATGCAAACAGACCAG+GGG 0.671195 3_1:-73949490 Msa0374480:three_prime_UTR
GGAGGATAAAACAATGGACA+TGG 0.671763 3_1:+73949434 None:intergenic
TCACTGCTGAGTGATGAATG+AGG 0.680213 3_1:-73949858 Msa0374480:three_prime_UTR
TCTGTGTCAATTGAAGGTTA+GGG 0.682149 3_1:+73949794 None:intergenic
GGAATTTGTGGCTGACACAG+AGG 0.693582 3_1:+73949358 None:intergenic
TCACTGCTGAGTGATGAATG+AGG 0.699203 3_1:-73949906 Msa0374480:exon
GAACTGGCGCAACATTTGAG+TGG 0.700408 3_1:-73951595 Msa0374480:CDS
GGTGGACAGTGAACTACTGG+CGG 0.704341 3_1:-73949729 Msa0374480:three_prime_UTR
TGAGTGATGAATGAGGGTGT+AGG 0.709515 3_1:-73949899 Msa0374480:exon
ACTGCTGAGTGATGAATGAG+GGG 0.728164 3_1:-73949856 Msa0374480:three_prime_UTR
CTAACCTTCAATTGACACAG+AGG 0.735306 3_1:-73949792 Msa0374480:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTGAGATTAATA+GGG - chr3_1:73951642-73951661 Msa0374480:CDS 10.0%
!! TTCTAATGTTGTAATAAAAT+TGG - chr3_1:73950174-73950193 Msa0374480:CDS 15.0%
!!! TTGTTGTATTATTTTTTTCA+TGG - chr3_1:73950630-73950649 Msa0374480:intron 15.0%
!!! TGTTGTATTATTTTTTTCAT+GGG - chr3_1:73950631-73950650 Msa0374480:intron 15.0%
!! TATAAAAATCTAATTAACAG+AGG + chr3_1:73950697-73950716 None:intergenic 15.0%
!!! CTTTTATATTTGAGATTAAT+AGG - chr3_1:73951641-73951660 Msa0374480:CDS 15.0%
!!! GTTGTATTATTTTTTTCATG+GGG - chr3_1:73950632-73950651 Msa0374480:intron 20.0%
!! AGAAAAAAAATCTTGTCATA+TGG + chr3_1:73951932-73951951 None:intergenic 20.0%
! TATTAGTAGAATCACGAAAA+TGG - chr3_1:73949666-73949685 Msa0374480:three_prime_UTR 25.0%
!! TGAAGTATTTAAGCAAAAGT+AGG + chr3_1:73950124-73950143 None:intergenic 25.0%
! TTTGTTACCTATCAATAAGA+TGG - chr3_1:73950146-73950165 Msa0374480:CDS 25.0%
! TTGTTACCTATCAATAAGAT+GGG - chr3_1:73950147-73950166 Msa0374480:CDS 25.0%
!! AAGACAAATTTGATAGCAAA+AGG - chr3_1:73950241-73950260 Msa0374480:CDS 25.0%
!! AGACAAATTTGATAGCAAAA+GGG - chr3_1:73950242-73950261 Msa0374480:CDS 25.0%
!!! ATTATTTTTTTCCGTGGTTT+AGG - chr3_1:73950280-73950299 Msa0374480:CDS 25.0%
! AAACTATAAGAGAAACTGTT+AGG - chr3_1:73950499-73950518 Msa0374480:intron 25.0%
! GTTCTATCATAAACCTTATT+TGG + chr3_1:73950552-73950571 None:intergenic 25.0%
! GTTTCATTACAGATTTAGAA+GGG - chr3_1:73950664-73950683 Msa0374480:intron 25.0%
!!! ATCTTGTAGAGTTTTATGAT+TGG - chr3_1:73950763-73950782 Msa0374480:intron 25.0%
!! TGCTTTTATCATTTTCAAAC+TGG - chr3_1:73950811-73950830 Msa0374480:intron 25.0%
!! GCTTTTATCATTTTCAAACT+GGG - chr3_1:73950812-73950831 Msa0374480:intron 25.0%
!! CTTTTATCATTTTCAAACTG+GGG - chr3_1:73950813-73950832 Msa0374480:intron 25.0%
! TAAACTTGATGTTATAACGT+AGG - chr3_1:73951095-73951114 Msa0374480:CDS 25.0%
! CAAGATATTGAGATAAAACA+TGG - chr3_1:73951238-73951257 Msa0374480:CDS 25.0%
! AAAACACAGAATCATAGTAA+GGG + chr3_1:73951616-73951635 None:intergenic 25.0%
! GTGTCAAGTGTTTATTTAAA+TGG + chr3_1:73951957-73951976 None:intergenic 25.0%
AACTGAATCAAGCATTCAAA+GGG + chr3_1:73949625-73949644 None:intergenic 30.0%
AAACTGAATCAAGCATTCAA+AGG + chr3_1:73949626-73949645 None:intergenic 30.0%
ACTTATTTAGGTGAAGTTGA+AGG - chr3_1:73949712-73949731 Msa0374480:three_prime_UTR 30.0%
CTTATTTAGGTGAAGTTGAA+GGG - chr3_1:73949713-73949732 Msa0374480:three_prime_UTR 30.0%
!!! TGGTTGCTATTTTCTTGATA+GGG - chr3_1:73949885-73949904 Msa0374480:three_prime_UTR 30.0%
GATAGGGCTAAATATATAAC+TGG - chr3_1:73949901-73949920 Msa0374480:exon 30.0%
AAATTGCCCATCTTATTGAT+AGG + chr3_1:73950156-73950175 None:intergenic 30.0%
!!! GTTGTCATTATTTTTTTCCG+TGG - chr3_1:73950274-73950293 Msa0374480:CDS 30.0%
!! TTATACCACTTTTCTACTGT+AGG + chr3_1:73950369-73950388 None:intergenic 30.0%
GTAGAAAAGTGGTATAAAAC+TGG - chr3_1:73950372-73950391 Msa0374480:intron 30.0%
! GTTTCTCTTATAGTTTTTCC+AGG + chr3_1:73950495-73950514 None:intergenic 30.0%
AACTGTTAGGAAATATGTAG+AGG - chr3_1:73950512-73950531 Msa0374480:intron 30.0%
ATATGTAGAGGTTAATGAGT+TGG - chr3_1:73950524-73950543 Msa0374480:intron 30.0%
! TAATGAGTTGGATCCAAATA+AGG - chr3_1:73950536-73950555 Msa0374480:intron 30.0%
!!! GTATTATTTTTTTCATGGGG+TGG - chr3_1:73950635-73950654 Msa0374480:intron 30.0%
GGTTTCATTACAGATTTAGA+AGG - chr3_1:73950663-73950682 Msa0374480:intron 30.0%
ACAAAGTATGGTAAATATGC+CGG - chr3_1:73950924-73950943 Msa0374480:intron 30.0%
TGAACTCTTAGTAGAAATCA+TGG - chr3_1:73951410-73951429 Msa0374480:CDS 30.0%
ATAATAACTTGAATCAGCTG+TGG - chr3_1:73951546-73951565 Msa0374480:intron 30.0%
GAAAACACAGAATCATAGTA+AGG + chr3_1:73951617-73951636 None:intergenic 30.0%
! TTTGAGATTAATAGGGATTC+TGG - chr3_1:73951649-73951668 Msa0374480:CDS 30.0%
TTGAGATTAATAGGGATTCT+GGG - chr3_1:73951650-73951669 Msa0374480:CDS 30.0%
ATTGTTGGAGGATAAAACAA+TGG + chr3_1:73951747-73951766 None:intergenic 30.0%
GAAGTAAACGATGAAATTGT+TGG + chr3_1:73951762-73951781 None:intergenic 30.0%
AATCAAATGCAAGGAATTTG+TGG + chr3_1:73951829-73951848 None:intergenic 30.0%
! TCTGAAACTAATCAAATGCA+AGG + chr3_1:73951838-73951857 None:intergenic 30.0%
TCCCTCAAACATCTTCAAAA+CGG - chr3_1:73949418-73949437 Msa0374480:three_prime_UTR 35.0%
TTGCTTGATTTCTTAAACGC+CGG - chr3_1:73949499-73949518 Msa0374480:three_prime_UTR 35.0%
TTGATTACGTTTCGTCTCTT+GGG - chr3_1:73949689-73949708 Msa0374480:three_prime_UTR 35.0%
GTTCAGAAACTAATGAAAGC+TGG + chr3_1:73949768-73949787 None:intergenic 35.0%
!! TTTTGGTTACAGGTTAGGTT+AGG - chr3_1:73949807-73949826 Msa0374480:three_prime_UTR 35.0%
!!! GTGGTTGCTATTTTCTTGAT+AGG - chr3_1:73949884-73949903 Msa0374480:three_prime_UTR 35.0%
AACATGAACATCAACAGGAA+TGG + chr3_1:73950091-73950110 None:intergenic 35.0%
TTCCTGTTGATGTTCATGTT+TGG - chr3_1:73950091-73950110 Msa0374480:intron 35.0%
!!! TTTTTTCCGTGGTTTAGGAA+TGG - chr3_1:73950285-73950304 Msa0374480:CDS 35.0%
! AAGTGGTATAAAACTGGCTT+AGG - chr3_1:73950378-73950397 Msa0374480:intron 35.0%
ACGAAGAGTAGATTAGATGT+AGG - chr3_1:73950442-73950461 Msa0374480:intron 35.0%
!!! TTATTTTTTTCATGGGGTGG+TGG - chr3_1:73950638-73950657 Msa0374480:intron 35.0%
TGCTATCATTTATGCATGAC+TGG - chr3_1:73950733-73950752 Msa0374480:intron 35.0%
! CTCGGGTAAGATATACTTTT+GGG + chr3_1:73950847-73950866 None:intergenic 35.0%
! GAGGCTTTTGTAACAAAGTA+TGG - chr3_1:73950912-73950931 Msa0374480:intron 35.0%
! CTGTTTTCTTCTATCTTTGC+GGG + chr3_1:73951038-73951057 None:intergenic 35.0%
!! GCTGTTTTCTTCTATCTTTG+CGG + chr3_1:73951039-73951058 None:intergenic 35.0%
TTCGATTAGAGTGAGATCTA+CGG - chr3_1:73951162-73951181 Msa0374480:CDS 35.0%
TCTGTGTCAATTGAAGGTTA+GGG + chr3_1:73951381-73951400 None:intergenic 35.0%
ACATGGAAGATGAACTTTGT+TGG - chr3_1:73951484-73951503 Msa0374480:CDS 35.0%
TTTGTTGGCAGAGTAAATAG+TGG - chr3_1:73951499-73951518 Msa0374480:CDS 35.0%
GTAAACGATGAAATTGTTGG+AGG + chr3_1:73951759-73951778 None:intergenic 35.0%
AAATCTTTCTCCCAATGAAG+AGG + chr3_1:73951893-73951912 None:intergenic 35.0%
CTTGTCATATGGCAAGAAAT+GGG + chr3_1:73951921-73951940 None:intergenic 35.0%
TCTTGTCATATGGCAAGAAA+TGG + chr3_1:73951922-73951941 None:intergenic 35.0%
AGGCAAAGCCTCTTTAATTA+GGG + chr3_1:73952003-73952022 None:intergenic 35.0%
AAGGCAAAGCCTCTTTAATT+AGG + chr3_1:73952004-73952023 None:intergenic 35.0%
AGGTAAGGATAGTTCTTGTC+GGG + chr3_1:73949314-73949333 None:intergenic 40.0%
GAGGTAAGGATAGTTCTTGT+CGG + chr3_1:73949315-73949334 None:intergenic 40.0%
ATGTTTGAGGGAAATGAGGT+GGG + chr3_1:73949410-73949429 None:intergenic 40.0%
GAAGATGTTTGAGGGAAATG+AGG + chr3_1:73949414-73949433 None:intergenic 40.0%
!!! GCCGTTTTGAAGATGTTTGA+GGG + chr3_1:73949422-73949441 None:intergenic 40.0%
ATCATCGTTGGAGGAAGATT+GGG + chr3_1:73949467-73949486 None:intergenic 40.0%
AATCATCGTTGGAGGAAGAT+TGG + chr3_1:73949468-73949487 None:intergenic 40.0%
CTCCAACGATGATTGCAAAA+CGG - chr3_1:73949474-73949493 Msa0374480:three_prime_UTR 40.0%
GGATTCCGATGAAAGATTTG+CGG - chr3_1:73949555-73949574 Msa0374480:three_prime_UTR 40.0%
CAGTTCCGCAAATCTTTCAT+CGG + chr3_1:73949563-73949582 None:intergenic 40.0%
GTTGATTACGTTTCGTCTCT+TGG - chr3_1:73949688-73949707 Msa0374480:three_prime_UTR 40.0%
TCGTCTCTTGGGACTTATTT+AGG - chr3_1:73949700-73949719 Msa0374480:three_prime_UTR 40.0%
! AATGAAAGCTGGTTCAGAGT+AGG + chr3_1:73949757-73949776 None:intergenic 40.0%
GTTTCGTGTGAATGTTAACG+TGG - chr3_1:73949865-73949884 Msa0374480:three_prime_UTR 40.0%
! GCTTTATTCTCTTCGCACAT+TGG - chr3_1:73949969-73949988 Msa0374480:CDS 40.0%
TCTGAACTTTCCAAGTTACC+TGG - chr3_1:73950009-73950028 Msa0374480:intron 40.0%
CTGTTGATGTTCATGTTTGG+CGG - chr3_1:73950094-73950113 Msa0374480:intron 40.0%
TGTTGATGTTCATGTTTGGC+GGG - chr3_1:73950095-73950114 Msa0374480:intron 40.0%
GTCTTACCATTCCTAAACCA+CGG + chr3_1:73950294-73950313 None:intergenic 40.0%
TTAGGAATGGTAAGACCAGA+CGG - chr3_1:73950298-73950317 Msa0374480:CDS 40.0%
ATTCCTAATCATATCCCGTC+TGG + chr3_1:73950316-73950335 None:intergenic 40.0%
ACACCATTAGAGAGAGAGTT+GGG - chr3_1:73950337-73950356 Msa0374480:intron 40.0%
TAGCTCCTACAGTAGAAAAG+TGG - chr3_1:73950361-73950380 Msa0374480:intron 40.0%
! TGGTATAAAACTGGCTTAGG+TGG - chr3_1:73950381-73950400 Msa0374480:intron 40.0%
CTTCGTACTACAACATCTAC+AGG + chr3_1:73950428-73950447 None:intergenic 40.0%
! GCTCGGGTAAGATATACTTT+TGG + chr3_1:73950848-73950867 None:intergenic 40.0%
GTGAAGTTTCTGTGTCAACT+TGG + chr3_1:73950880-73950899 None:intergenic 40.0%
GAAAACAGCAAAGAAGAAGC+TGG - chr3_1:73951050-73951069 Msa0374480:intron 40.0%
TCGATTAGAGTGAGATCTAC+GGG - chr3_1:73951163-73951182 Msa0374480:CDS 40.0%
CTCTGTGTCAATTGAAGGTT+AGG + chr3_1:73951382-73951401 None:intergenic 40.0%
CTAACCTTCAATTGACACAG+AGG - chr3_1:73951380-73951399 Msa0374480:CDS 40.0%
AGAGAAACGCAGAACAAACA+CGG + chr3_1:73951589-73951608 None:intergenic 40.0%
! GATTAATAGGGATTCTGGGA+TGG - chr3_1:73951654-73951673 Msa0374480:CDS 40.0%
GGAGGATAAAACAATGGACA+TGG + chr3_1:73951741-73951760 None:intergenic 40.0%
AGAGGTGGACAATGAACTAT+TGG + chr3_1:73951799-73951818 None:intergenic 40.0%
TCTGCATCTTTCCTCTTCAT+TGG - chr3_1:73951879-73951898 Msa0374480:CDS 40.0%
CTGCATCTTTCCTCTTCATT+GGG - chr3_1:73951880-73951899 Msa0374480:CDS 40.0%
TTAGCTCCCCCTAATTAAAG+AGG - chr3_1:73951992-73952011 Msa0374480:CDS 40.0%
GCAAAGCCTCTTTAATTAGG+GGG + chr3_1:73952001-73952020 None:intergenic 40.0%
GGCAAAGCCTCTTTAATTAG+GGG + chr3_1:73952002-73952021 None:intergenic 40.0%
AAGAGGAGGAGGTAGTGATT+TGG + chr3_1:73949203-73949222 None:intergenic 45.0%
!! ATATTGAGAGGTTGGTGGAG+TGG + chr3_1:73949264-73949283 None:intergenic 45.0%
CTTGTCGGGTTATGTTGAGA+GGG + chr3_1:73949300-73949319 None:intergenic 45.0%
TCTTGTCGGGTTATGTTGAG+AGG + chr3_1:73949301-73949320 None:intergenic 45.0%
GATGTTTGAGGGAAATGAGG+TGG + chr3_1:73949411-73949430 None:intergenic 45.0%
!!! CGCCGTTTTGAAGATGTTTG+AGG + chr3_1:73949423-73949442 None:intergenic 45.0%
! CGTTTTGCAATCATCGTTGG+AGG + chr3_1:73949476-73949495 None:intergenic 45.0%
!!! TGCCGTTTTGCAATCATCGT+TGG + chr3_1:73949479-73949498 None:intergenic 45.0%
CGATGAAAGATTTGCGGAAC+TGG - chr3_1:73949561-73949580 Msa0374480:three_prime_UTR 45.0%
! GCAACATTTGAGTGGTGCTA+GGG - chr3_1:73949585-73949604 Msa0374480:three_prime_UTR 45.0%
!!! CAACTAAGAGACGCTGGTTT+TGG - chr3_1:73949790-73949809 Msa0374480:three_prime_UTR 45.0%
!!! GCTGGTTTTGGTTACAGGTT+AGG - chr3_1:73949802-73949821 Msa0374480:three_prime_UTR 45.0%
GCTTTGCAATCAAAGCCTGA+AGG - chr3_1:73949934-73949953 Msa0374480:CDS 45.0%
TTGCAATCAAAGCCTGAAGG+TGG - chr3_1:73949937-73949956 Msa0374480:CDS 45.0%
TGCAATCAAAGCCTGAAGGT+GGG - chr3_1:73949938-73949957 Msa0374480:CDS 45.0%
CTTTCCAAGTTACCTGGAGT+TGG - chr3_1:73950015-73950034 Msa0374480:intron 45.0%
! GCTATACAAGCAGCCACTTT+AGG + chr3_1:73950042-73950061 None:intergenic 45.0%
GAACATCAACAGGAATGGCA+TGG + chr3_1:73950086-73950105 None:intergenic 45.0%
CGCCAAACATGAACATCAAC+AGG + chr3_1:73950096-73950115 None:intergenic 45.0%
TAGGAATGGTAAGACCAGAC+GGG - chr3_1:73950299-73950318 Msa0374480:CDS 45.0%
AGACCAGACGGGATATGATT+AGG - chr3_1:73950310-73950329 Msa0374480:CDS 45.0%
GACACCATTAGAGAGAGAGT+TGG - chr3_1:73950336-73950355 Msa0374480:intron 45.0%
CACCATTAGAGAGAGAGTTG+GGG - chr3_1:73950338-73950357 Msa0374480:intron 45.0%
TACCCCAACTCTCTCTCTAA+TGG + chr3_1:73950343-73950362 None:intergenic 45.0%
TGTAGGAGTCAGATCAGAAG+AGG - chr3_1:73950459-73950478 Msa0374480:intron 45.0%
AGTCAGATCAGAAGAGGTAG+TGG - chr3_1:73950465-73950484 Msa0374480:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr3_1:73950605-73950624 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr3_1:73950606-73950625 None:intergenic 45.0%
!!! TTTTTTTCATGGGGTGGTGG+AGG - chr3_1:73950641-73950660 Msa0374480:intron 45.0%
!!! TTTTTTCATGGGGTGGTGGA+GGG - chr3_1:73950642-73950661 Msa0374480:intron 45.0%
TATATCTTACCCGAGCTTGC+AGG - chr3_1:73950852-73950871 Msa0374480:intron 45.0%
AGTATGGTAAATATGCCGGC+TGG - chr3_1:73950928-73950947 Msa0374480:intron 45.0%
! GTATGGTAAATATGCCGGCT+GGG - chr3_1:73950929-73950948 Msa0374480:intron 45.0%
CCTCAAGTGTAAAGGTAGGA+GGG + chr3_1:73950997-73951016 None:intergenic 45.0%
CCTCCTACCTTTACACTTGA+GGG - chr3_1:73950995-73951014 Msa0374480:intron 45.0%
TGTCCCTCAAGTGTAAAGGT+AGG + chr3_1:73951001-73951020 None:intergenic 45.0%
! TTGGTGTCCCTCAAGTGTAA+AGG + chr3_1:73951005-73951024 None:intergenic 45.0%
AACGTAGGCGTTCGAATATG+CGG - chr3_1:73951110-73951129 Msa0374480:CDS 45.0%
! ATCTACGGGTTGTGAGTCTA+AGG - chr3_1:73951177-73951196 Msa0374480:CDS 45.0%
TCACTGCTGAGTGATGAATG+AGG - chr3_1:73951266-73951285 Msa0374480:CDS 45.0%
CACTGCTGAGTGATGAATGA+GGG - chr3_1:73951267-73951286 Msa0374480:CDS 45.0%
! TGAGTGATGAATGAGGGTGT+AGG - chr3_1:73951273-73951292 Msa0374480:intron 45.0%
TCACTGCTGAGTGATGAATG+AGG - chr3_1:73951266-73951285 Msa0374480:CDS 45.0%
CACTGCTGAGTGATGAATGA+GGG - chr3_1:73951267-73951286 Msa0374480:CDS 45.0%
ACTGCTGAGTGATGAATGAG+GGG - chr3_1:73951268-73951287 Msa0374480:CDS 45.0%
ACCTTCAATTGACACAGAGG+TGG - chr3_1:73951383-73951402 Msa0374480:CDS 45.0%
TCCACCTCTGTGTCAATTGA+AGG + chr3_1:73951387-73951406 None:intergenic 45.0%
AGAAATCATGGTCGAAGCAG+AGG - chr3_1:73951422-73951441 Msa0374480:CDS 45.0%
TGACTTAGTCGTTGCGAACA+TGG - chr3_1:73951467-73951486 Msa0374480:CDS 45.0%
! GGCAGAGTAAATAGTGGAGA+TGG - chr3_1:73951505-73951524 Msa0374480:CDS 45.0%
! AATAGTGGAGATGGACGTGT+AGG - chr3_1:73951514-73951533 Msa0374480:CDS 45.0%
AATCAGCTGTGGATAGAGCA+TGG - chr3_1:73951557-73951576 Msa0374480:intron 45.0%
ATCAGCTGTGGATAGAGCAT+GGG - chr3_1:73951558-73951577 Msa0374480:intron 45.0%
AGTGAAGATGCAAACAGACC+AGG - chr3_1:73951680-73951699 Msa0374480:CDS 45.0%
GTGAAGATGCAAACAGACCA+GGG - chr3_1:73951681-73951700 Msa0374480:CDS 45.0%
TGAAGATGCAAACAGACCAG+GGG - chr3_1:73951682-73951701 Msa0374480:CDS 45.0%
AATATCCGTGAATTCTCCCC+TGG + chr3_1:73951701-73951720 None:intergenic 45.0%
AACAATGGACATGGACATGC+AGG + chr3_1:73951732-73951751 None:intergenic 45.0%
TGAACTATTGGCGGAAGACA+TGG + chr3_1:73951787-73951806 None:intergenic 45.0%
GGTGGACAATGAACTATTGG+CGG + chr3_1:73951796-73951815 None:intergenic 45.0%
!! GGAGGAGGTAGTGATTTGGT+GGG + chr3_1:73949199-73949218 None:intergenic 50.0%
! AGGAGGAGGTAGTGATTTGG+TGG + chr3_1:73949200-73949219 None:intergenic 50.0%
CCACCAACCTCTCAATATCC+CGG - chr3_1:73949266-73949285 Msa0374480:three_prime_UTR 50.0%
CACCAACCTCTCAATATCCC+GGG - chr3_1:73949267-73949286 Msa0374480:three_prime_UTR 50.0%
TACCCGGGATATTGAGAGGT+TGG + chr3_1:73949272-73949291 None:intergenic 50.0%
ACCTCTCAATATCCCGGGTA+TGG - chr3_1:73949272-73949291 Msa0374480:three_prime_UTR 50.0%
TCCATACCCGGGATATTGAG+AGG + chr3_1:73949276-73949295 None:intergenic 50.0%
TGTTGAGAGGGATCCATACC+CGG + chr3_1:73949288-73949307 None:intergenic 50.0%
TTTCCAGCGGAAGGTTTGAC+CGG + chr3_1:73949350-73949369 None:intergenic 50.0%
! AAGGAGCGGTGTTTTTCCAG+CGG + chr3_1:73949363-73949382 None:intergenic 50.0%
ACCGCTCCTTCTCAATTCAC+CGG - chr3_1:73949373-73949392 Msa0374480:three_prime_UTR 50.0%
GGAGGAAGATTGGGAGTGAA+GGG + chr3_1:73949458-73949477 None:intergenic 50.0%
TGGAGGAAGATTGGGAGTGA+AGG + chr3_1:73949459-73949478 None:intergenic 50.0%
CGTGTCAGCAAGAGAAACAC+CGG + chr3_1:73949521-73949540 None:intergenic 50.0%
GTGTTTCTCTTGCTGACACG+TGG - chr3_1:73949521-73949540 Msa0374480:three_prime_UTR 50.0%
TTCTCTTGCTGACACGTGGA+AGG - chr3_1:73949525-73949544 Msa0374480:three_prime_UTR 50.0%
!! TGACACGTGGAAGGTGTTCT+CGG - chr3_1:73949534-73949553 Msa0374480:three_prime_UTR 50.0%
GAACTGGCGCAACATTTGAG+TGG - chr3_1:73949577-73949596 Msa0374480:three_prime_UTR 50.0%
CGCAACATTTGAGTGGTGCT+AGG - chr3_1:73949584-73949603 Msa0374480:three_prime_UTR 50.0%
GAACAGCAACTAAGAGACGC+TGG - chr3_1:73949784-73949803 Msa0374480:three_prime_UTR 50.0%
!!! GAGACGCTGGTTTTGGTTAC+AGG - chr3_1:73949797-73949816 Msa0374480:three_prime_UTR 50.0%
GCAATCAAAGCCTGAAGGTG+GGG - chr3_1:73949939-73949958 Msa0374480:CDS 50.0%
AGGACCAACTCCAGGTAACT+TGG + chr3_1:73950022-73950041 None:intergenic 50.0%
! ACCTGGAGTTGGTCCTAAAG+TGG - chr3_1:73950026-73950045 Msa0374480:intron 50.0%
GCTTAGGTGGTTTGAGCATG+TGG - chr3_1:73950394-73950413 Msa0374480:intron 50.0%
!! AGAAGAGGTAGTGGAAGACC+TGG - chr3_1:73950474-73950493 Msa0374480:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr3_1:73950601-73950620 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr3_1:73950607-73950626 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr3_1:73950604-73950623 Msa0374480:intron 50.0%
AACTTGGAACCTGCAAGCTC+GGG + chr3_1:73950864-73950883 None:intergenic 50.0%
CAACTTGGAACCTGCAAGCT+CGG + chr3_1:73950865-73950884 None:intergenic 50.0%
ACTTCACAGTCGTGTTGCAG+AGG - chr3_1:73950893-73950912 Msa0374480:intron 50.0%
TAAAACAGCTTGAGCCCAGC+CGG + chr3_1:73950946-73950965 None:intergenic 50.0%
TGCCGAGTTGCCTTCACAAA+AGG - chr3_1:73950971-73950990 Msa0374480:intron 50.0%
! GGCCTTTTGTGAAGGCAACT+CGG + chr3_1:73950976-73950995 None:intergenic 50.0%
CCCTCCTACCTTTACACTTG+AGG - chr3_1:73950994-73951013 Msa0374480:intron 50.0%
CCCTCAAGTGTAAAGGTAGG+AGG + chr3_1:73950998-73951017 None:intergenic 50.0%
CTTTGCGGGATTCTTCTGCT+TGG + chr3_1:73951024-73951043 None:intergenic 50.0%
AATCATGGTCGAAGCAGAGG+TGG - chr3_1:73951425-73951444 Msa0374480:CDS 50.0%
AGAGGTGGACAGTGAACTAC+TGG - chr3_1:73951440-73951459 Msa0374480:CDS 50.0%
ACAGACCAGGGGAGAATTCA+CGG - chr3_1:73951693-73951712 Msa0374480:CDS 50.0%
ATTTGTGGCTGACACAGAGG+TGG + chr3_1:73951814-73951833 None:intergenic 50.0%
GGAATTTGTGGCTGACACAG+AGG + chr3_1:73951817-73951836 None:intergenic 50.0%
GTTGAAGGTGGAAGAGGAGG+AGG + chr3_1:73949214-73949233 None:intergenic 55.0%
! GGTGTTGAAGGTGGAAGAGG+AGG + chr3_1:73949217-73949236 None:intergenic 55.0%
!! GTTTGGGTTTGGGGTGTTGG+GGG + chr3_1:73949238-73949257 None:intergenic 55.0%
!! GGTTTGGGTTTGGGGTGTTG+GGG + chr3_1:73949239-73949258 None:intergenic 55.0%
! GGGTTTGGGTTTGGGGTGTT+GGG + chr3_1:73949240-73949259 None:intergenic 55.0%
!! TTGAGAGGTTGGTGGAGTGG+CGG + chr3_1:73949261-73949280 None:intergenic 55.0%
CCGGGATATTGAGAGGTTGG+TGG + chr3_1:73949269-73949288 None:intergenic 55.0%
GTTGAGAGGGATCCATACCC+GGG + chr3_1:73949287-73949306 None:intergenic 55.0%
TTACCTCTCACCTTCCCCAC+CGG - chr3_1:73949328-73949347 Msa0374480:three_prime_UTR 55.0%
! AGCGGTGTTTTTCCAGCGGA+AGG + chr3_1:73949359-73949378 None:intergenic 55.0%
GCCGGTGAATTGAGAAGGAG+CGG + chr3_1:73949377-73949396 None:intergenic 55.0%
ACGACGCCGGTGAATTGAGA+AGG + chr3_1:73949382-73949401 None:intergenic 55.0%
TCTCAATTCACCGGCGTCGT+TGG - chr3_1:73949382-73949401 Msa0374480:three_prime_UTR 55.0%
AGCCTGAAGGTGGGGAAGAA+TGG - chr3_1:73949947-73949966 Msa0374480:CDS 55.0%
AGCCATTCTTCCCCACCTTC+AGG + chr3_1:73949952-73949971 None:intergenic 55.0%
!! GCCACTTTAGGACCAACTCC+AGG + chr3_1:73950030-73950049 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3_1:73950593-73950612 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3_1:73950592-73950611 Msa0374480:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3_1:73950593-73950612 Msa0374480:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr3_1:73950599-73950618 Msa0374480:intron 55.0%
! GGTAGGAGGGCCTTTTGTGA+AGG + chr3_1:73950984-73951003 None:intergenic 55.0%
! GAGTCTAAGGCGATACACGC+TGG - chr3_1:73951190-73951209 Msa0374480:CDS 55.0%
! GAGTGATGAATGAGGGGTGC+AGG - chr3_1:73951322-73951341 Msa0374480:intron 55.0%
GGTGGACAGTGAACTACTGG+CGG - chr3_1:73951443-73951462 Msa0374480:CDS 55.0%
!! GGGGGTGTTGAAGGTGGAAG+AGG + chr3_1:73949220-73949239 None:intergenic 60.0%
!! GGTGTTGGGGGTGTTGAAGG+TGG + chr3_1:73949226-73949245 None:intergenic 60.0%
!! TGGGGTGTTGGGGGTGTTGA+AGG + chr3_1:73949229-73949248 None:intergenic 60.0%
! CGGGTTTGGGTTTGGGGTGT+TGG + chr3_1:73949241-73949260 None:intergenic 60.0%
!! GAGTGGCGGGTTTGGGTTTG+GGG + chr3_1:73949247-73949266 None:intergenic 60.0%
!! GGAGTGGCGGGTTTGGGTTT+GGG + chr3_1:73949248-73949267 None:intergenic 60.0%
!! TGGAGTGGCGGGTTTGGGTT+TGG + chr3_1:73949249-73949268 None:intergenic 60.0%
!! GTTGGTGGAGTGGCGGGTTT+GGG + chr3_1:73949254-73949273 None:intergenic 60.0%
!! TGAGAGGTTGGTGGAGTGGC+GGG + chr3_1:73949260-73949279 None:intergenic 60.0%
GGTGGGGAAGGTGAGAGGTA+AGG + chr3_1:73949329-73949348 None:intergenic 60.0%
GAAGGTTTGACCGGTGGGGA+AGG + chr3_1:73949341-73949360 None:intergenic 60.0%
AGCGGAAGGTTTGACCGGTG+GGG + chr3_1:73949345-73949364 None:intergenic 60.0%
CAGCGGAAGGTTTGACCGGT+GGG + chr3_1:73949346-73949365 None:intergenic 60.0%
GCGATACACGCTGGAGACTC+AGG - chr3_1:73951199-73951218 Msa0374480:CDS 60.0%
!! GGTTGGTGGAGTGGCGGGTT+TGG + chr3_1:73949255-73949274 None:intergenic 65.0%
TGACCGGTGGGGAAGGTGAG+AGG + chr3_1:73949334-73949353 None:intergenic 65.0%
CCAGCGGAAGGTTTGACCGG+TGG + chr3_1:73949347-73949366 None:intergenic 65.0%
CCACCGGTCAAACCTTCCGC+TGG - chr3_1:73949344-73949363 Msa0374480:three_prime_UTR 65.0%
GAGGTGGGAGCCAACGACGC+CGG + chr3_1:73949395-73949414 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73949166 73952028 73949166 ID=Msa0374480;Name=Msa0374480
chr3_1 mRNA 73949166 73952028 73949166 ID=Msa0374480-mRNA-1;Parent=Msa0374480;Name=Msa0374480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.4|1|0.5|0.4|5|749|388
chr3_1 exon 73949166 73950021 73949166 ID=Msa0374480-mRNA-1:exon:16953;Parent=Msa0374480-mRNA-1
chr3_1 exon 73950123 73950354 73950123 ID=Msa0374480-mRNA-1:exon:16952;Parent=Msa0374480-mRNA-1
chr3_1 exon 73951078 73951288 73951078 ID=Msa0374480-mRNA-1:exon:16951;Parent=Msa0374480-mRNA-1
chr3_1 exon 73951376 73951551 73951376 ID=Msa0374480-mRNA-1:exon:16950;Parent=Msa0374480-mRNA-1
chr3_1 exon 73951588 73952028 73951588 ID=Msa0374480-mRNA-1:exon:16949;Parent=Msa0374480-mRNA-1
chr3_1 CDS 73951588 73952028 73951588 ID=Msa0374480-mRNA-1:cds;Parent=Msa0374480-mRNA-1
chr3_1 CDS 73951376 73951551 73951376 ID=Msa0374480-mRNA-1:cds;Parent=Msa0374480-mRNA-1
chr3_1 CDS 73951078 73951288 73951078 ID=Msa0374480-mRNA-1:cds;Parent=Msa0374480-mRNA-1
chr3_1 CDS 73950123 73950354 73950123 ID=Msa0374480-mRNA-1:cds;Parent=Msa0374480-mRNA-1
chr3_1 CDS 73949915 73950021 73949915 ID=Msa0374480-mRNA-1:cds;Parent=Msa0374480-mRNA-1
chr3_1 three_prime_UTR 73949166 73949914 73949166 ID=Msa0374480-mRNA-1:three_prime_utr;Parent=Msa0374480-mRNA-1
Gene Sequence

>Msa0374480

ATAAGAGCAATGACGAAGAGAAAAAGATCACCCACCAAATCACTACCTCCTCCTCTTCCACCTTCAACACCCCCAACACCCCAAACCCAAACCCGCCACTCCACCAACCTCTCAATATCCCGGGTATGGATCCCTCTCAACATAACCCGACAAGAACTATCCTTACCTCTCACCTTCCCCACCGGTCAAACCTTCCGCTGGAAAAACACCGCTCCTTCTCAATTCACCGGCGTCGTTGGCTCCCACCTCATTTCCCTCAAACATCTTCAAAACGGCGACGTTTGCTACACCCTTCACTCCCAATCTTCCTCCAACGATGATTGCAAAACGGCATTGCTTGATTTCTTAAACGCCGGTGTTTCTCTTGCTGACACGTGGAAGGTGTTCTCGGATTCCGATGAAAGATTTGCGGAACTGGCGCAACATTTGAGTGGTGCTAGGTTTATGTGTTCTTCTAATAATCATATTAGTAGAATCACGAAAATGGTTGATTACGTTTCGTCTCTTGGGACTTATTTAGGTGAAGTTGAAGGGTTTGATTTTCATGCTTTTCCTACTCTGAACCAGCTTTCATTAGTTTCTGAACAGCAACTAAGAGACGCTGGTTTTGGTTACAGGGCTAAATATATAACTGGCACTGTAAATGCTTTGCAATCAAAGCCTGAAGGTGGGGAAGAATGGCTTTATTCTCTTCGCACATTGGAGCTTGAAGATGTAATATCTGAACTTTCCAAGTTACCTGGAGTTGGTCCTAAAGTGGCTGCTTGTATAGCTCTTTACTCACTTGATCAGCACCATGCCATTCCTGTTGATGTTCATGTTTGGCGGATTGCCCAAAAGTATATCTTACCCGAGCTTGCAGGTTCCAAGTTGACACAGAAACTTCACAGTCGTGTTGCAGAGGCTTTTGTAACAAAGTATGGTAAATATGCCGGCTGGGCTCAAGCTGTTTTATTTATTGCCGAGTTGCCTTCACAAAAGGCCCTCCTACCTTTACACTTGAGGGACACCAAGCAGAAGAATCCCGCAAAGATAGAAGAAAACAGCAAAGAAGAAGCTGTGAGATCTACGGGTTGTGAGTCTAAGGCGATACACGCTGGAGACTCAGGCGCGACAGACTGCAATCAAGATATTGAGATAAAACATGGTGATATCACTGCTGAGTGA
Protein sequence

>Msa0374480

IRAMTKRKRSPTKSLPPPLPPSTPPTPQTQTRHSTNLSISRVWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQFTGVVGSHLISLKHLQNGDVCYTLHSQSSSNDDCKTALLDFLNAGVSLADTWKVFSDSDERFAELAQHLSGARFMCSSNNHISRITKMVDYVSSLGTYLGEVEGFDFHAFPTLNQLSLVSEQQLRDAGFGYRAKYITGTVNALQSKPEGGEEWLYSLRTLELEDVISELSKLPGVGPKVAACIALYSLDQHHAIPVDVHVWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKYGKYAGWAQAVLFIAELPSQKALLPLHLRDTKQKNPAKIEENSKEEAVRSTGCESKAIHAGDSGATDCNQDIEIKHGDITAE*