AlfalfaGEDB | Msa0375240

M. sativa cultivar zhongmu-4 / Msa0375240

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905177 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375240	AES73877.1	92.331	326	14	4	1	323	1	318	0.0	545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375240	sp\|O82632\|GATA9_ARATH	49.684	316	114	10	30	323	16	308	5.20e-86	264

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375240	G7J3H0	92.331	326	14	4	1	323	1	318	0.0	545

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TFs/TRs:

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Gene ID	Type	Classification
Msa0375240	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0375240	Msa0434080	0.827901	1.211064e-54	-8.615850e-47
Msa0375240	Msa0477880	0.817560	3.095857e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375240	MtrunA17_Chr3g0140331	92.331	326	14	4	1	323	47	364	0.0	544
Msa0375240	MtrunA17_Chr1g0146231	52.857	350	120	10	6	323	8	344	6.14e-107	315
Msa0375240	MtrunA17_Chr8g0340401	45.082	366	134	14	1	323	1	342	3.33e-80	247
Msa0375240	MtrunA17_Chr4g0035891	36.824	296	144	11	1	281	13	280	1.92e-43	151
Msa0375240	MtrunA17_Chr8g0372291	39.362	282	128	11	19	282	32	288	3.78e-42	147
Msa0375240	MtrunA17_Chr3g0145121	39.852	271	142	10	19	282	29	285	6.44e-40	142
Msa0375240	MtrunA17_Chr1g0199671	37.597	258	97	8	83	276	49	306	1.61e-37	136
Msa0375240	MtrunA17_Chr6g0461591	37.778	225	89	6	104	278	35	258	3.10e-36	131
Msa0375240	MtrunA17_Chr5g0404981	40.708	226	96	7	90	282	150	370	5.03e-35	131
Msa0375240	MtrunA17_Chr7g0253101	41.038	212	82	7	104	276	45	252	6.61e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375240	AT4G32890.1	49.684	316	114	10	30	323	16	308	5.29e-87	264
Msa0375240	AT5G25830.1	47.175	354	129	11	2	323	4	331	1.63e-85	261
Msa0375240	AT3G60530.1	48.039	204	74	5	89	292	63	234	1.71e-51	171
Msa0375240	AT2G45050.1	47.907	215	76	7	89	289	65	257	1.22e-48	164
Msa0375240	AT4G36240.1	39.300	257	111	8	32	279	11	231	3.12e-38	136
Msa0375240	AT5G66320.2	39.768	259	98	7	76	292	87	329	6.48e-38	138
Msa0375240	AT5G66320.1	39.768	259	98	7	76	292	87	329	6.48e-38	138
Msa0375240	AT3G24050.1	77.941	68	15	0	211	278	193	260	4.57e-33	123
Msa0375240	AT1G08010.2	67.073	82	21	1	209	284	217	298	4.65e-32	121
Msa0375240	AT1G08010.1	67.073	82	21	1	209	284	217	298	4.65e-32	121

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Find 105 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGACCTCGGTGATGG+AGG	0.595010	3_1:-74885950	Msa0375240:CDS
AAATGATTCCTCAGCAAATT+TGG	0.139979	3_1:+74886231	None:intergenic
AAGACACTATGCAATGCGTG+TGG	0.676419	3_1:-74885857	Msa0375240:CDS
AAGACTCCACAGTGGCGCAC+CGG	0.525177	3_1:-74885893	Msa0375240:CDS
AAGGGCCGTCGGCAGAATTC+TGG	0.309787	3_1:+74887822	None:intergenic
AAGTAATCCTCACCGTTGGA+TGG	0.600786	3_1:+74885647	None:intergenic
AATATTCAAAGCTGCGTTGG+AGG	0.492539	3_1:+74885556	None:intergenic
AATCAAGTAATCCTCACCGT+TGG	0.595692	3_1:+74885643	None:intergenic
AATGGCCCGGTGCGCCACTG+TGG	0.564107	3_1:+74885887	None:intergenic
ACAAAGTGTGACAAAGTTTG+TGG	0.433866	3_1:+74888165	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATATATAATGGCACGTAC+CGG	+	chr3_1:74885838-74885857	None:intergenic	30.0%
TATCTGTTCCATTGAATTTG+AGG	-	chr3_1:74885973-74885992	Msa0375240:CDS	30.0%
ATCTGTTCCATTGAATTTGA+GGG	-	chr3_1:74885974-74885993	Msa0375240:CDS	30.0%
CACACATATTAAAGAAAAGC+AGG	+	chr3_1:74886114-74886133	None:intergenic	30.0%
AAATGATTCCTCAGCAAATT+TGG	+	chr3_1:74887386-74887405	None:intergenic	30.0%
ATATCAACTGTAGCTTATGA+AGG	+	chr3_1:74887420-74887439	None:intergenic	30.0%
ATTAATATTCAAAGCTGCGT+TGG	+	chr3_1:74888064-74888083	None:intergenic	30.0%
CGTCATAAACTAAAAATGGT+AGG	+	chr3_1:74888120-74888139	None:intergenic	30.0%
CTGTCGTCATAAACTAAAAA+TGG	+	chr3_1:74888124-74888143	None:intergenic	30.0%
ACAAAGTGTGACAAAGTTTG+TGG	+	chr3_1:74885452-74885471	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	74885418	74888218	74885418	ID=Msa0375240;Name=Msa0375240
chr3_1	mRNA	74885418	74888218	74885418	ID=Msa0375240-mRNA-1;Parent=Msa0375240;Name=Msa0375240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132\|1\|1\|1\|1\|1\|2\|186\|323
chr3_1	exon	74885418	74886287	74885418	ID=Msa0375240-mRNA-1:exon:17469;Parent=Msa0375240-mRNA-1
chr3_1	exon	74887799	74888218	74887799	ID=Msa0375240-mRNA-1:exon:17468;Parent=Msa0375240-mRNA-1
chr3_1	five_prime_UTR	74888087	74888218	74888087	ID=Msa0375240-mRNA-1:five_prime_utr;Parent=Msa0375240-mRNA-1
chr3_1	CDS	74887799	74888086	74887799	ID=Msa0375240-mRNA-1:cds;Parent=Msa0375240-mRNA-1
chr3_1	CDS	74885604	74886287	74885604	ID=Msa0375240-mRNA-1:cds;Parent=Msa0375240-mRNA-1
chr3_1	three_prime_UTR	74885418	74885603	74885418	ID=Msa0375240-mRNA-1:three_prime_utr;Parent=Msa0375240-mRNA-1

Gene Sequence

>Msa0375240

ATGGAAGCTCAAGAGTTTTTCCAAACCAGCTTCTGTCCACAATCCGACAACAATTCCACCACAAACAATGTAAACACTGCTGCTTCCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATGAGGATGTTGCCATTGAAGACCCCACTTTCGAAGAATCTCCTCCTACCAACTCTAATGATTCTCCTCCTCTTGAAACCAATCCCACTTCCAATTTTTTCACCGACGTCAATTCGTGCCAGAATTCTGCCGACGGCCCTTTCTCCGGCGAACTCTCCGTTCCGCAATATGATGATCTTGCGCAGCTAGAATGGATGTCCAAATTTGCTGAGGAATCATTTTCAAGTGAGGACCTTCATAAGCTACAGTTGATATCTGGATTAAAGGCACCAAATAACGTTGAATCAAAAACTCATGAAGAACGCAACCCAACAATACACCCTCAAGTGTCTGTCCCGGCAAAAGCCCGTAGTAAACGGTCACGTGTGCCTCCATGCAACTGGACTTCGCGCCTTCTAGTTCTCTCTCCAACCATGACCACCACCACCACATCTTCTCACTCTGACACCATGGCTCCACCAAAAAAGCCCTCTCCAAGAAAAAGAGACCTCGGTGATGGAGGAGAGGGTCGCAAGTGTCTTCATTGCGCCACTGATAAGACTCCACAGTGGCGCACCGGGCCATTAGGTCCAAAGACACTATGCAATGCGTGTGGAGTCAGATACAAGTCAGGTCGACTCGTACCTGAGTATAGACCTGCAGCAAGCCCAACATTTGTGTTGACTAAGCACTCCAACTCACATCGAAAGGTGCAAGAGCTCCGACGCCAGAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAGCATTATGTTTGAAGGACCATCCAACGGTGAGGATTACTTGATTCATCAACACGTGGGACCCGATTTCACGCACCTCATGTAG

Protein sequence

>Msa0375240

MEAQEFFQTSFCPQSDNNSTTNNVNTAASDHFIVEDLFDFSNEDVAIEDPTFEESPPTNSNDSPPLETNPTSNFFTDVNSCQNSADGPFSGELSVPQYDDLAQLEWMSKFAEESFSSEDLHKLQLISGLKAPNNVESKTHEERNPTIHPQVSVPAKARSKRSRVPPCNWTSRLLVLSPTMTTTTTSSHSDTMAPPKKPSPRKRDLGDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHSIMFEGPSNGEDYLIHQHVGPDFTHLM*