Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0434080 | AES73877.1 | 93.231 | 325 | 12 | 3 | 1 | 322 | 1 | 318 | 0.0 | 552 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0434080 | sp|O82632|GATA9_ARATH | 49.841 | 315 | 114 | 12 | 30 | 322 | 16 | 308 | 1.12e-84 | 260 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0434080 | G7J3H0 | 93.231 | 325 | 12 | 3 | 1 | 322 | 1 | 318 | 0.0 | 552 |
Gene ID | Type | Classification |
---|---|---|
Msa0434080 | TF | C2C2-GATA |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0375240 | Msa0434080 | 0.827901 | 1.211064e-54 | -8.615850e-47 |
Msa0434080 | Msa0477880 | 0.810421 | 1.162174e-50 | -8.615850e-47 |
Msa0434080 | Msa1079730 | 0.812542 | 4.023391e-51 | -8.615850e-47 |
Msa0434080 | Msa1168040 | 0.823794 | 1.143265e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0434080 | MtrunA17_Chr3g0140331 | 93.231 | 325 | 12 | 3 | 1 | 322 | 47 | 364 | 0.0 | 551 |
Msa0434080 | MtrunA17_Chr1g0146231 | 53.295 | 349 | 119 | 9 | 6 | 322 | 8 | 344 | 3.97e-108 | 318 |
Msa0434080 | MtrunA17_Chr8g0340401 | 44.384 | 365 | 137 | 12 | 1 | 322 | 1 | 342 | 5.35e-80 | 246 |
Msa0434080 | MtrunA17_Chr8g0372291 | 39.655 | 290 | 115 | 12 | 19 | 281 | 32 | 288 | 5.82e-43 | 149 |
Msa0434080 | MtrunA17_Chr4g0035891 | 37.162 | 296 | 142 | 12 | 1 | 280 | 13 | 280 | 8.15e-43 | 149 |
Msa0434080 | MtrunA17_Chr3g0145121 | 40.520 | 269 | 142 | 10 | 19 | 281 | 29 | 285 | 1.59e-40 | 143 |
Msa0434080 | MtrunA17_Chr1g0199671 | 35.667 | 300 | 128 | 10 | 36 | 275 | 12 | 306 | 2.24e-38 | 139 |
Msa0434080 | MtrunA17_Chr6g0461591 | 37.778 | 225 | 89 | 6 | 103 | 277 | 35 | 258 | 4.56e-36 | 130 |
Msa0434080 | MtrunA17_Chr5g0404981 | 40.708 | 226 | 96 | 7 | 89 | 281 | 150 | 370 | 9.89e-35 | 130 |
Msa0434080 | MtrunA17_Chr7g0253101 | 41.038 | 212 | 82 | 7 | 103 | 275 | 45 | 252 | 1.05e-34 | 127 |
Msa0434080 | MtrunA17_Chr1g0169431 | 78.873 | 71 | 15 | 0 | 210 | 280 | 171 | 241 | 1.42e-33 | 124 |
Msa0434080 | MtrunA17_Chr5g0395391 | 53.211 | 109 | 51 | 0 | 172 | 280 | 231 | 339 | 5.92e-33 | 124 |
Msa0434080 | MtrunA17_Chr5g0395391 | 49.206 | 126 | 49 | 2 | 150 | 274 | 120 | 231 | 5.97e-30 | 116 |
Msa0434080 | MtrunA17_Chr1g0213161 | 60.674 | 89 | 28 | 2 | 208 | 293 | 149 | 233 | 6.04e-30 | 114 |
Msa0434080 | MtrunA17_Chr4g0028961 | 60.465 | 86 | 34 | 0 | 211 | 296 | 232 | 317 | 6.72e-30 | 115 |
Msa0434080 | MtrunA17_Chr2g0326771 | 75.385 | 65 | 16 | 0 | 211 | 275 | 216 | 280 | 2.65e-29 | 114 |
Msa0434080 | MtrunA17_Chr7g0232671 | 55.696 | 79 | 32 | 2 | 200 | 277 | 175 | 251 | 1.72e-22 | 94.4 |
Msa0434080 | MtrunA17_Chr7g0232681 | 34.783 | 184 | 102 | 6 | 90 | 271 | 25 | 192 | 2.66e-21 | 89.7 |
Msa0434080 | MtrunA17_Chr7g0232701 | 53.947 | 76 | 31 | 1 | 196 | 271 | 62 | 133 | 1.54e-20 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0434080 | AT4G32890.1 | 49.841 | 315 | 114 | 12 | 30 | 322 | 16 | 308 | 1.14e-85 | 260 |
Msa0434080 | AT5G25830.1 | 47.592 | 353 | 128 | 11 | 2 | 322 | 4 | 331 | 5.24e-85 | 259 |
Msa0434080 | AT3G60530.1 | 48.039 | 204 | 74 | 5 | 88 | 291 | 63 | 234 | 2.41e-51 | 170 |
Msa0434080 | AT2G45050.1 | 44.697 | 264 | 105 | 10 | 40 | 288 | 20 | 257 | 3.35e-49 | 165 |
Msa0434080 | AT4G36240.1 | 40.234 | 256 | 109 | 7 | 32 | 278 | 11 | 231 | 3.39e-39 | 138 |
Msa0434080 | AT5G66320.2 | 40.408 | 245 | 89 | 6 | 89 | 291 | 100 | 329 | 8.09e-37 | 135 |
Msa0434080 | AT5G66320.1 | 40.408 | 245 | 89 | 6 | 89 | 291 | 100 | 329 | 8.09e-37 | 135 |
Msa0434080 | AT3G24050.1 | 77.941 | 68 | 15 | 0 | 210 | 277 | 193 | 260 | 4.76e-33 | 123 |
Msa0434080 | AT4G34680.1 | 44.022 | 184 | 72 | 7 | 98 | 280 | 96 | 249 | 3.03e-32 | 121 |
Msa0434080 | AT4G34680.2 | 44.022 | 184 | 72 | 7 | 98 | 280 | 96 | 249 | 3.03e-32 | 121 |
Msa0434080 | AT1G08010.2 | 67.073 | 82 | 21 | 1 | 208 | 283 | 217 | 298 | 4.41e-32 | 121 |
Msa0434080 | AT1G08010.1 | 67.073 | 82 | 21 | 1 | 208 | 283 | 217 | 298 | 4.41e-32 | 121 |
Msa0434080 | AT1G08010.3 | 67.073 | 82 | 21 | 1 | 208 | 283 | 217 | 298 | 4.41e-32 | 121 |
Msa0434080 | AT3G54810.1 | 75.000 | 68 | 17 | 0 | 211 | 278 | 229 | 296 | 9.00e-32 | 121 |
Msa0434080 | AT3G54810.2 | 75.000 | 68 | 17 | 0 | 211 | 278 | 229 | 296 | 9.00e-32 | 121 |
Msa0434080 | AT3G51080.1 | 73.913 | 69 | 18 | 0 | 211 | 279 | 221 | 289 | 4.25e-30 | 116 |
Msa0434080 | AT1G08000.2 | 60.227 | 88 | 30 | 1 | 208 | 290 | 215 | 302 | 4.59e-30 | 116 |
Msa0434080 | AT1G08000.1 | 60.227 | 88 | 30 | 1 | 208 | 290 | 215 | 302 | 4.59e-30 | 116 |
Msa0434080 | AT3G45170.1 | 62.319 | 69 | 26 | 0 | 211 | 279 | 115 | 183 | 5.51e-26 | 102 |
Msa0434080 | AT2G28340.1 | 68.254 | 63 | 20 | 0 | 213 | 275 | 193 | 255 | 1.21e-24 | 101 |
Find 104 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGATTCCTCAGCAAATT+TGG | 0.139979 | 3_2:+86814311 | None:intergenic |
CTACATGAGGTGCGTGAAAT+CGG | 0.267854 | 3_2:+86813684 | None:intergenic |
CACGCATTGCATAGTGTCTT+TGG | 0.290696 | 3_2:+86813940 | None:intergenic |
ACAGTTGATATCTGGATTAA+AGG | 0.306992 | 3_2:-86814265 | Msa0434080:CDS |
CATAAGCTACAGTTGATATC+TGG | 0.309428 | 3_2:-86814273 | Msa0434080:CDS |
AAGGGCCGTCGGCAGAATTC+TGG | 0.309787 | 3_2:+86815908 | None:intergenic |
CAGTGGCGCACCGGGCCATT+AGG | 0.332794 | 3_2:-86813964 | Msa0434080:CDS |
CATAGTGTCTTTGGACCTAA+TGG | 0.339675 | 3_2:+86813949 | None:intergenic |
GTGAGAGAGAAAAGCATAAG+AGG | 0.370517 | 3_2:+86816298 | None:intergenic |
CACGTGTGCCTCCATGCAAC+TGG | 0.370780 | 3_2:-86814149 | Msa0434080:CDS |
GGGCCCTCATCATCTCCTTC+TGG | 0.374473 | 3_2:+86813803 | None:intergenic |
ATTGTGGACAGAAGCTGGTT+TGG | 0.397002 | 3_2:+86816127 | None:intergenic |
TTGCAACAATTGGTGTTGTT+GGG | 0.408578 | 3_2:+86813783 | None:intergenic |
GTTGCAACAATTGGTGTTGT+TGG | 0.409369 | 3_2:+86813782 | None:intergenic |
GACACTTGAGGGTGTATTGT+TGG | 0.425894 | 3_2:+86814201 | None:intergenic |
TGCTTAGTCAACACAAATGT+TGG | 0.431309 | 3_2:+86813862 | None:intergenic |
CATCACAGCATTATGTTTGA+AGG | 0.433831 | 3_2:-86813751 | Msa0434080:CDS |
ACAAAGTGTGACAAAGTTTG+TGG | 0.433866 | 3_2:+86816266 | None:intergenic |
TCTCTTTGATTTCTCTAATG+AGG | 0.434233 | 3_2:-86816040 | Msa0434080:CDS |
CGGCAAAAGCCCGTAGTAAA+CGG | 0.443499 | 3_2:-86814173 | Msa0434080:CDS |
TTCGAAAGTGGGGTCTTCAA+TGG | 0.445894 | 3_2:+86816011 | None:intergenic |
TACATGAGGTGCGTGAAATC+GGG | 0.448275 | 3_2:+86813685 | None:intergenic |
ATGATCTTGCGCAGCTAGAA+TGG | 0.454058 | 3_2:-86814338 | Msa0434080:CDS |
TTGCACCTTTCGATGTGAGT+TGG | 0.456005 | 3_2:+86813837 | None:intergenic |
CTCCGGCGAACTCTCCGTTC+CGG | 0.462198 | 3_2:-86815884 | Msa0434080:intron |
ACGGAGAGTTCGCCGGAGAA+AGG | 0.464710 | 3_2:+86815889 | None:intergenic |
AGATGTGGTGGTGGTGGTCA+TGG | 0.465812 | 3_2:+86814098 | None:intergenic |
GTTTGTGGTGGAATTGTTGT+CGG | 0.468374 | 3_2:+86816104 | None:intergenic |
GTGGTGGTGGTGGTCATGGT+TGG | 0.470501 | 3_2:+86814102 | None:intergenic |
TTGCCGGGACAGACACTTGA+GGG | 0.471708 | 3_2:+86814190 | None:intergenic |
ACAAATGTTGGGCTTGCTGC+AGG | 0.475199 | 3_2:+86813874 | None:intergenic |
CCTCATGTAGTACGGTGCTT+TGG | 0.478377 | 3_2:-86813671 | Msa0434080:exon |
GTGTGACAAAGTTTGTGGTT+TGG | 0.486157 | 3_2:+86816271 | None:intergenic |
TCATCATCTCCTTCTGGCGT+CGG | 0.486176 | 3_2:+86813809 | None:intergenic |
CGGAGAGTTCGCCGGAGAAA+GGG | 0.487872 | 3_2:+86815890 | None:intergenic |
ATTAATATTCAAAGCTGCGT+TGG | 0.490776 | 3_2:+86813633 | None:intergenic |
CTCTTGAGCTTCCATGGGTT+AGG | 0.491426 | 3_2:+86816155 | None:intergenic |
AATATTCAAAGCTGCGTTGG+AGG | 0.492539 | 3_2:+86813636 | None:intergenic |
GCTTAGTCAACACAAATGTT+GGG | 0.498811 | 3_2:+86813863 | None:intergenic |
AGCAGTGTTTACATTGTTTG+TGG | 0.499828 | 3_2:+86816089 | None:intergenic |
TCTGCCGACGGCCCTTTCTC+CGG | 0.501462 | 3_2:-86815901 | Msa0434080:CDS |
AGAATTCTGGCACGAATTGT+CGG | 0.501620 | 3_2:+86815921 | None:intergenic |
GTGGGATTGGTTTCAAGAGG+AGG | 0.506926 | 3_2:+86815958 | None:intergenic |
GTGGAATTGTTGTCGGATTG+TGG | 0.509048 | 3_2:+86816111 | None:intergenic |
AGGAGGAGATTCTTCGAAAG+TGG | 0.514544 | 3_2:+86815999 | None:intergenic |
GATGTTGTAGTTGCAACAAT+TGG | 0.517809 | 3_2:+86813773 | None:intergenic |
ACACTTGAGGGTGTATTGTT+GGG | 0.518688 | 3_2:+86814202 | None:intergenic |
AGACTCCACAGTGGCGCACC+GGG | 0.518894 | 3_2:-86813972 | Msa0434080:CDS |
AAGACTCCACAGTGGCGCAC+CGG | 0.525177 | 3_2:-86813973 | Msa0434080:CDS |
TTGAGCTTCCATGGGTTAGG+AGG | 0.527789 | 3_2:+86816158 | None:intergenic |
GAATCATTAGAGTTGGTAGG+AGG | 0.531077 | 3_2:+86815982 | None:intergenic |
GCAAGAGCTCCGACGCCAGA+AGG | 0.533988 | 3_2:-86813818 | Msa0434080:CDS |
GTCGGATTGTGGACAGAAGC+TGG | 0.535564 | 3_2:+86816122 | None:intergenic |
GGAGAATCATTAGAGTTGGT+AGG | 0.541668 | 3_2:+86815979 | None:intergenic |
ATATCAACTGTAGCTTATGA+AGG | 0.545098 | 3_2:+86814277 | None:intergenic |
AGGAGGAGAATCATTAGAGT+TGG | 0.548174 | 3_2:+86815975 | None:intergenic |
ATAATGAAGTGAGAAAGTAT+AGG | 0.561648 | 3_2:+86816229 | None:intergenic |
GTCGACTCGTACCTGAGTAT+AGG | 0.562857 | 3_2:-86813897 | Msa0434080:CDS |
CACACGTGACCGTTTACTAC+GGG | 0.563431 | 3_2:+86814164 | None:intergenic |
AATGGCCCGGTGCGCCACTG+TGG | 0.564107 | 3_2:+86813967 | None:intergenic |
GGAGGAGATTCTTCGAAAGT+GGG | 0.565310 | 3_2:+86816000 | None:intergenic |
TGTGGAGTCAGATACAAGTC+AGG | 0.567755 | 3_2:-86813919 | Msa0434080:CDS |
TACCGGAACGGAGAGTTCGC+CGG | 0.569597 | 3_2:+86815882 | None:intergenic |
GACGCCAGAAGGAGATGATG+AGG | 0.570929 | 3_2:-86813807 | Msa0434080:CDS |
TGATCTTGCGCAGCTAGAAT+GGG | 0.571023 | 3_2:-86814337 | Msa0434080:CDS |
GAAGTGGGATTGGTTTCAAG+AGG | 0.577002 | 3_2:+86815955 | None:intergenic |
AGAGATCTTCAACGATGAAG+TGG | 0.579783 | 3_2:+86816058 | None:intergenic |
GTGAGAAGATGTGGTGGTGG+TGG | 0.580310 | 3_2:+86814092 | None:intergenic |
GCACACGTGACCGTTTACTA+CGG | 0.581455 | 3_2:+86814163 | None:intergenic |
AGGCGCGAAGTCCAGTTGCA+TGG | 0.582876 | 3_2:+86814138 | None:intergenic |
TGTCTTTGGACCTAATGGCC+CGG | 0.587867 | 3_2:+86813954 | None:intergenic |
GACCTCGGTGATGGAGGAGA+GGG | 0.591558 | 3_2:-86814024 | Msa0434080:CDS |
TTTGCCGGGACAGACACTTG+AGG | 0.592935 | 3_2:+86814189 | None:intergenic |
ACACCCTCAAGTGTCTGTCC+CGG | 0.593472 | 3_2:-86814193 | Msa0434080:CDS |
AAAAGAGACCTCGGTGATGG+AGG | 0.595010 | 3_2:-86814030 | Msa0434080:CDS |
AGAGTGAGAAGATGTGGTGG+TGG | 0.596239 | 3_2:+86814089 | None:intergenic |
TATAATGGCACGTACCGGAA+CGG | 0.606350 | 3_2:+86815870 | None:intergenic |
AAGTAGTCATCACCGTTGGA+TGG | 0.607107 | 3_2:+86813727 | None:intergenic |
AATCAAGTAGTCATCACCGT+TGG | 0.609015 | 3_2:+86813723 | None:intergenic |
ACGCCAGAAGGAGATGATGA+GGG | 0.609091 | 3_2:-86813806 | Msa0434080:CDS |
AGACCTCGGTGATGGAGGAG+AGG | 0.609530 | 3_2:-86814025 | Msa0434080:CDS |
CAACAACACCTCCTAACCCA+TGG | 0.609995 | 3_2:-86816166 | Msa0434080:exon |
TTCGCCGGAGAAAGGGCCGT+CGG | 0.611125 | 3_2:+86815897 | None:intergenic |
GCACTCCAACTCACATCGAA+AGG | 0.612333 | 3_2:-86813842 | Msa0434080:CDS |
TTCACGCACCTCATGTAGTA+CGG | 0.615224 | 3_2:-86813679 | Msa0434080:exon |
AGTGTTTACATTGTTTGTGG+TGG | 0.618078 | 3_2:+86816092 | None:intergenic |
CTTGCTGCAGGCCTATACTC+AGG | 0.624212 | 3_2:+86813886 | None:intergenic |
ATCTTCAACGATGAAGTGGT+CGG | 0.624703 | 3_2:+86816062 | None:intergenic |
ATCTTCTCACTCTGACACCA+TGG | 0.629511 | 3_2:-86814079 | Msa0434080:CDS |
CTACTTGATTCATCAACACG+TGG | 0.630573 | 3_2:-86813710 | Msa0434080:CDS |
TCGTGCCAGAATTCTGCCGA+CGG | 0.642132 | 3_2:-86815913 | Msa0434080:CDS |
GTCAGAGTGAGAAGATGTGG+TGG | 0.644152 | 3_2:+86814086 | None:intergenic |
ATGTTTGAAGGACCATCCAA+CGG | 0.648434 | 3_2:-86813739 | Msa0434080:CDS |
CCAAAGCACCGTACTACATG+AGG | 0.651273 | 3_2:+86813671 | None:intergenic |
CCACTGTGGAGTCTTATCAG+TGG | 0.652363 | 3_2:+86813981 | None:intergenic |
TGGTTGGAGAGAGAACTAGA+AGG | 0.657111 | 3_2:+86814118 | None:intergenic |
CGCGAAGTCCAGTTGCATGG+AGG | 0.662375 | 3_2:+86814141 | None:intergenic |
GGTGTCAGAGTGAGAAGATG+TGG | 0.671117 | 3_2:+86814083 | None:intergenic |
ATGGGTGTCCAAATTTGCTG+AGG | 0.672775 | 3_2:-86814319 | Msa0434080:CDS |
AAGACACTATGCAATGCGTG+TGG | 0.676419 | 3_2:-86813937 | Msa0434080:CDS |
TACTTGATTCATCAACACGT+GGG | 0.690057 | 3_2:-86813709 | Msa0434080:CDS |
GAGGAGATTCTTCGAAAGTG+GGG | 0.692052 | 3_2:+86816001 | None:intergenic |
GACCCTCTCCTCCATCACCG+AGG | 0.717630 | 3_2:+86814022 | None:intergenic |
CCACTGATAAGACTCCACAG+TGG | 0.837860 | 3_2:-86813981 | Msa0434080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTTAAAAAAAAAAATATAG+GGG | + | chr3_2:86814887-86814906 | None:intergenic | 10.0% |
!!! | TTGTTTTTATATACAACAAT+TGG | - | chr3_2:86814014-86814033 | Msa0434080:CDS | 15.0% |
!!! | AAATAAAGAGAGTATTATTT+AGG | + | chr3_2:86814091-86814110 | None:intergenic | 15.0% |
!! | ATGTGACAAAATTAAAAATA+GGG | + | chr3_2:86814504-86814523 | None:intergenic | 15.0% |
!! | TATGTGACAAAATTAAAAAT+AGG | + | chr3_2:86814505-86814524 | None:intergenic | 15.0% |
!! | GTTAAAAAAAAAAATATAGG+GGG | + | chr3_2:86814886-86814905 | None:intergenic | 15.0% |
!! | ATATTTGTAATAAAAGCTAA+GGG | + | chr3_2:86814937-86814956 | None:intergenic | 15.0% |
!! | TATATTTGTAATAAAAGCTA+AGG | + | chr3_2:86814938-86814957 | None:intergenic | 15.0% |
!!! | TATTATTTTTGTTTAGAGAA+GGG | + | chr3_2:86814976-86814995 | None:intergenic | 15.0% |
!!! | TTATTATTTTTGTTTAGAGA+AGG | + | chr3_2:86814977-86814996 | None:intergenic | 15.0% |
!!! | TCATTTTTAAGATACTATAT+CGG | + | chr3_2:86815167-86815186 | None:intergenic | 15.0% |
!! | ATATAAAGTAAGAATTCTAA+TGG | - | chr3_2:86815194-86815213 | Msa0434080:intron | 15.0% |
!!! | ATTATGTTATGTATTTTCTA+AGG | + | chr3_2:86815344-86815363 | None:intergenic | 15.0% |
!! | AGAAAATACATAACATAATA+TGG | - | chr3_2:86815345-86815364 | Msa0434080:intron | 15.0% |
!! | TTTCATAAGTATGACAATTA+TGG | + | chr3_2:86814280-86814299 | None:intergenic | 20.0% |
!!! | TCTTAAGATATACCTTTTTT+AGG | + | chr3_2:86815127-86815146 | None:intergenic | 20.0% |
!! | TCTTAAGACAACAATTAAAA+AGG | - | chr3_2:86815139-86815158 | Msa0434080:intron | 20.0% |
!! | ATAATGAAGTGAGAAAGTAT+AGG | + | chr3_2:86813569-86813588 | None:intergenic | 25.0% |
! | AATGGAACAGATAAAATTGT+AGG | + | chr3_2:86814054-86814073 | None:intergenic | 25.0% |
! | CACACATATTAAAGAAAAGT+AGG | + | chr3_2:86814202-86814221 | None:intergenic | 25.0% |
! | CAAAAGTAGAAAAATTGTCT+TGG | + | chr3_2:86814442-86814461 | None:intergenic | 25.0% |
!! | CAAGACAATTTTTCTACTTT+TGG | - | chr3_2:86814440-86814459 | Msa0434080:intron | 25.0% |
!!! | TATAGTCTTTTATTTAGTCG+TGG | - | chr3_2:86814574-86814593 | Msa0434080:intron | 25.0% |
!!! | ATAGTCTTTTATTTAGTCGT+GGG | - | chr3_2:86814575-86814594 | Msa0434080:intron | 25.0% |
! | TAAGAAAATGTGAGGTATAT+GGG | - | chr3_2:86814601-86814620 | Msa0434080:intron | 25.0% |
!! | GAGTGAATTTTGAATTTCAA+GGG | - | chr3_2:86814631-86814650 | Msa0434080:intron | 25.0% |
!! | GATAACACTTTTCCTAAAAA+AGG | - | chr3_2:86815112-86815131 | Msa0434080:intron | 25.0% |
!!! | GTTTTTGATTCAACGTTATT+TGG | + | chr3_2:86815558-86815577 | None:intergenic | 25.0% |
! | TCTCTTTGATTTCTCTAATG+AGG | - | chr3_2:86813755-86813774 | Msa0434080:CDS | 30.0% |
ATATATATAATGGCACGTAC+CGG | + | chr3_2:86813933-86813952 | None:intergenic | 30.0% | |
TATCTGTTCCATTGAATTTG+AGG | - | chr3_2:86814061-86814080 | Msa0434080:CDS | 30.0% | |
ATCTGTTCCATTGAATTTGA+GGG | - | chr3_2:86814062-86814081 | Msa0434080:CDS | 30.0% | |
!! | AAAAATAGGGTCTTGTTAAC+CGG | + | chr3_2:86814491-86814510 | None:intergenic | 30.0% |
CTAAGAAAATGTGAGGTATA+TGG | - | chr3_2:86814600-86814619 | Msa0434080:intron | 30.0% | |
! | GGAGTGAATTTTGAATTTCA+AGG | - | chr3_2:86814630-86814649 | Msa0434080:intron | 30.0% |
AAATGATTCCTCAGCAAATT+TGG | + | chr3_2:86815487-86815506 | None:intergenic | 30.0% | |
ATATCAACTGTAGCTTATGA+AGG | + | chr3_2:86815521-86815540 | None:intergenic | 30.0% | |
! | ACAGTTGATATCTGGATTAA+AGG | - | chr3_2:86815530-86815549 | Msa0434080:intron | 30.0% |
ATTAATATTCAAAGCTGCGT+TGG | + | chr3_2:86816165-86816184 | None:intergenic | 30.0% | |
CGTCATAAACTAAAAATGGT+AGG | + | chr3_2:86816221-86816240 | None:intergenic | 30.0% | |
CTGTCGTCATAAACTAAAAA+TGG | + | chr3_2:86816225-86816244 | None:intergenic | 30.0% | |
!!! | CATTTTTAGTTTATGACGAC+AGG | - | chr3_2:86816223-86816242 | Msa0434080:five_prime_UTR | 30.0% |
ACAAAGTGTGACAAAGTTTG+TGG | + | chr3_2:86813532-86813551 | None:intergenic | 35.0% | |
! | GTTGTTGTTGTTGTTAGGTT+TGG | + | chr3_2:86813616-86813635 | None:intergenic | 35.0% |
AAAAACTCTTGAGCTTCCAT+GGG | + | chr3_2:86813648-86813667 | None:intergenic | 35.0% | |
AGTGTTTACATTGTTTGTGG+TGG | + | chr3_2:86813706-86813725 | None:intergenic | 35.0% | |
AGCAGTGTTTACATTGTTTG+TGG | + | chr3_2:86813709-86813728 | None:intergenic | 35.0% | |
GAAAAAATTGGAAGTGGGAT+TGG | + | chr3_2:86813853-86813872 | None:intergenic | 35.0% | |
TCGGTGAAAAAATTGGAAGT+GGG | + | chr3_2:86813858-86813877 | None:intergenic | 35.0% | |
CGAATTGTCGGTGAAAAAAT+TGG | + | chr3_2:86813865-86813884 | None:intergenic | 35.0% | |
TTGACTCAACATGTGTAGTT+AGG | - | chr3_2:86813987-86814006 | Msa0434080:CDS | 35.0% | |
TAGGTTTCCCTCAAATTCAA+TGG | + | chr3_2:86814072-86814091 | None:intergenic | 35.0% | |
ATTGGTTAAGCAGCTAAAAG+AGG | - | chr3_2:86814357-86814376 | Msa0434080:intron | 35.0% | |
!!! | TGAGGAATCATTTTCAAGTG+AGG | - | chr3_2:86815494-86815513 | Msa0434080:intron | 35.0% |
! | CATAAGCTACAGTTGATATC+TGG | - | chr3_2:86815522-86815541 | Msa0434080:intron | 35.0% |
GCTTAGTCAACACAAATGTT+GGG | + | chr3_2:86815935-86815954 | None:intergenic | 35.0% | |
TGCTTAGTCAACACAAATGT+TGG | + | chr3_2:86815936-86815955 | None:intergenic | 35.0% | |
!! | TTGCAACAATTGGTGTTGTT+GGG | + | chr3_2:86816015-86816034 | None:intergenic | 35.0% |
GATGTTGTAGTTGCAACAAT+TGG | + | chr3_2:86816025-86816044 | None:intergenic | 35.0% | |
CATCACAGCATTATGTTTGA+AGG | - | chr3_2:86816044-86816063 | Msa0434080:CDS | 35.0% | |
TACTTGATTCATCAACACGT+GGG | - | chr3_2:86816086-86816105 | Msa0434080:CDS | 35.0% | |
GTGTGACAAAGTTTGTGGTT+TGG | + | chr3_2:86813527-86813546 | None:intergenic | 40.0% | |
!! | GAGGTGTTGTTGTTGTTGTT+AGG | + | chr3_2:86813621-86813640 | None:intergenic | 40.0% |
GAAAAACTCTTGAGCTTCCA+TGG | + | chr3_2:86813649-86813668 | None:intergenic | 40.0% | |
! | GTTTGTGGTGGAATTGTTGT+CGG | + | chr3_2:86813694-86813713 | None:intergenic | 40.0% |
ATCTTCAACGATGAAGTGGT+CGG | + | chr3_2:86813736-86813755 | None:intergenic | 40.0% | |
AGAGATCTTCAACGATGAAG+TGG | + | chr3_2:86813740-86813759 | None:intergenic | 40.0% | |
!! | GAATCATTAGAGTTGGTAGG+AGG | + | chr3_2:86813816-86813835 | None:intergenic | 40.0% |
! | GGAGAATCATTAGAGTTGGT+AGG | + | chr3_2:86813819-86813838 | None:intergenic | 40.0% |
AGGAGGAGAATCATTAGAGT+TGG | + | chr3_2:86813823-86813842 | None:intergenic | 40.0% | |
GTCGGTGAAAAAATTGGAAG+TGG | + | chr3_2:86813859-86813878 | None:intergenic | 40.0% | |
AGAATTCTGGCACGAATTGT+CGG | + | chr3_2:86813877-86813896 | None:intergenic | 40.0% | |
GTGGGAACTAAGAAAATGTG+AGG | - | chr3_2:86814593-86814612 | Msa0434080:intron | 40.0% | |
ATGTGAGGTATATGGGATAG+AGG | - | chr3_2:86814608-86814627 | Msa0434080:intron | 40.0% | |
TGTGAGGTATATGGGATAGA+GGG | - | chr3_2:86814609-86814628 | Msa0434080:intron | 40.0% | |
CCTTATGATACACACCTACA+CGG | - | chr3_2:86815286-86815305 | Msa0434080:intron | 40.0% | |
ATATCTTATGTTCGCCGTGT+AGG | + | chr3_2:86815303-86815322 | None:intergenic | 40.0% | |
! | ACACTTGAGGGTGTATTGTT+GGG | + | chr3_2:86815596-86815615 | None:intergenic | 40.0% |
!!! | TTTCTTGGAGAGGGCTTTTT+TGG | + | chr3_2:86815747-86815766 | None:intergenic | 40.0% |
! | AGGTCTCTTTTTCTTGGAGA+GGG | + | chr3_2:86815756-86815775 | None:intergenic | 40.0% |
TCTCCAAGAAAAAGAGACCT+CGG | - | chr3_2:86815756-86815775 | Msa0434080:intron | 40.0% | |
CATAGTGTCTTTGGACCTAA+TGG | + | chr3_2:86815849-86815868 | None:intergenic | 40.0% | |
!! | GTTGCAACAATTGGTGTTGT+TGG | + | chr3_2:86816016-86816035 | None:intergenic | 40.0% |
ATGTTTGAAGGACCATCCAA+CGG | - | chr3_2:86816056-86816075 | Msa0434080:CDS | 40.0% | |
AATCAAGTAGTCATCACCGT+TGG | + | chr3_2:86816075-86816094 | None:intergenic | 40.0% | |
CTACTTGATTCATCAACACG+TGG | - | chr3_2:86816085-86816104 | Msa0434080:CDS | 40.0% | |
AATATTCAAAGCTGCGTTGG+AGG | + | chr3_2:86816162-86816181 | None:intergenic | 40.0% | |
ATTGTGGACAGAAGCTGGTT+TGG | + | chr3_2:86813671-86813690 | None:intergenic | 45.0% | |
GTGGAATTGTTGTCGGATTG+TGG | + | chr3_2:86813687-86813706 | None:intergenic | 45.0% | |
TTCGAAAGTGGGGTCTTCAA+TGG | + | chr3_2:86813787-86813806 | None:intergenic | 45.0% | |
GAGGAGATTCTTCGAAAGTG+GGG | + | chr3_2:86813797-86813816 | None:intergenic | 45.0% | |
GGAGGAGATTCTTCGAAAGT+GGG | + | chr3_2:86813798-86813817 | None:intergenic | 45.0% | |
AGGAGGAGATTCTTCGAAAG+TGG | + | chr3_2:86813799-86813818 | None:intergenic | 45.0% | |
!! | GAAGTGGGATTGGTTTCAAG+AGG | + | chr3_2:86813843-86813862 | None:intergenic | 45.0% |
TATAATGGCACGTACCGGAA+CGG | + | chr3_2:86813928-86813947 | None:intergenic | 45.0% | |
TGGATTCTTAACAAGTGCCC+CGG | - | chr3_2:86814460-86814479 | Msa0434080:intron | 45.0% | |
CCGTGTAGGTGTGTATCATA+AGG | + | chr3_2:86815289-86815308 | None:intergenic | 45.0% | |
ATGATCTTGCGCAGCTAGAA+TGG | - | chr3_2:86815457-86815476 | Msa0434080:intron | 45.0% | |
TGATCTTGCGCAGCTAGAAT+GGG | - | chr3_2:86815458-86815477 | Msa0434080:intron | 45.0% | |
!! | ATGGGTGTCCAAATTTGCTG+AGG | - | chr3_2:86815476-86815495 | Msa0434080:intron | 45.0% |
! | GACACTTGAGGGTGTATTGT+TGG | + | chr3_2:86815597-86815616 | None:intergenic | 45.0% |
TGGTTGGAGAGAGAACTAGA+AGG | + | chr3_2:86815680-86815699 | None:intergenic | 45.0% | |
ATCTTCTCACTCTGACACCA+TGG | - | chr3_2:86815716-86815735 | Msa0434080:intron | 45.0% | |
! | GAGGTCTCTTTTTCTTGGAG+AGG | + | chr3_2:86815757-86815776 | None:intergenic | 45.0% |
! | TCACCGAGGTCTCTTTTTCT+TGG | + | chr3_2:86815762-86815781 | None:intergenic | 45.0% |
AGAAAAAGAGACCTCGGTGA+TGG | - | chr3_2:86815762-86815781 | Msa0434080:intron | 45.0% | |
CACGCATTGCATAGTGTCTT+TGG | + | chr3_2:86815858-86815877 | None:intergenic | 45.0% | |
AAGACACTATGCAATGCGTG+TGG | - | chr3_2:86815858-86815877 | Msa0434080:intron | 45.0% | |
TGTGGAGTCAGATACAAGTC+AGG | - | chr3_2:86815876-86815895 | Msa0434080:intron | 45.0% | |
TTGCACCTTTCGATGTGAGT+TGG | + | chr3_2:86815961-86815980 | None:intergenic | 45.0% | |
AAGTAGTCATCACCGTTGGA+TGG | + | chr3_2:86816071-86816090 | None:intergenic | 45.0% | |
TACATGAGGTGCGTGAAATC+GGG | + | chr3_2:86816113-86816132 | None:intergenic | 45.0% | |
CTACATGAGGTGCGTGAAAT+CGG | + | chr3_2:86816114-86816133 | None:intergenic | 45.0% | |
TTCACGCACCTCATGTAGTA+CGG | - | chr3_2:86816116-86816135 | Msa0434080:CDS | 45.0% | |
!! | AATAATTACTATATATATAA+TGG | + | chr3_2:86813943-86813962 | None:intergenic | 5.0% |
!!! | AAATGAATATTATTTTTTTA+AGG | - | chr3_2:86814309-86814328 | Msa0434080:CDS | 5.0% |
!! | TATAAATATATGATAAAAAA+AGG | + | chr3_2:86814558-86814577 | None:intergenic | 5.0% |
!! | TAGTTAAAAAAAAAAATATA+GGG | + | chr3_2:86814888-86814907 | None:intergenic | 5.0% |
!! | ATAGTTAAAAAAAAAAATAT+AGG | + | chr3_2:86814889-86814908 | None:intergenic | 5.0% |
!!! | ATAAATTTTATTATATTTGA+TGG | + | chr3_2:86815061-86815080 | None:intergenic | 5.0% |
CAACAACACCTCCTAACCCA+TGG | - | chr3_2:86813629-86813648 | Msa0434080:three_prime_UTR | 50.0% | |
!! | TTGAGCTTCCATGGGTTAGG+AGG | + | chr3_2:86813640-86813659 | None:intergenic | 50.0% |
CTCTTGAGCTTCCATGGGTT+AGG | + | chr3_2:86813643-86813662 | None:intergenic | 50.0% | |
!! | GTGGGATTGGTTTCAAGAGG+AGG | + | chr3_2:86813840-86813859 | None:intergenic | 50.0% |
GAGAATGTTAACCAGTGCCC+CGG | - | chr3_2:86814331-86814350 | Msa0434080:CDS | 50.0% | |
AGAATGTTAACCAGTGCCCC+GGG | - | chr3_2:86814332-86814351 | Msa0434080:CDS | 50.0% | |
TAGCTGCTTAACCAATGCCC+CGG | + | chr3_2:86814353-86814372 | None:intergenic | 50.0% | |
GGATTCTTAACAAGTGCCCC+GGG | - | chr3_2:86814461-86814480 | Msa0434080:intron | 50.0% | |
GATTCTTAACAAGTGCCCCG+GGG | - | chr3_2:86814462-86814481 | Msa0434080:intron | 50.0% | |
ATTCTTAACAAGTGCCCCGG+GGG | - | chr3_2:86814463-86814482 | Msa0434080:intron | 50.0% | |
! | GTTTACTACGGGCTTTTGCC+GGG | + | chr3_2:86815623-86815642 | None:intergenic | 50.0% |
! | CGTTTACTACGGGCTTTTGC+CGG | + | chr3_2:86815624-86815643 | None:intergenic | 50.0% |
CGGCAAAAGCCCGTAGTAAA+CGG | - | chr3_2:86815622-86815641 | Msa0434080:intron | 50.0% | |
CACACGTGACCGTTTACTAC+GGG | + | chr3_2:86815634-86815653 | None:intergenic | 50.0% | |
GCACACGTGACCGTTTACTA+CGG | + | chr3_2:86815635-86815654 | None:intergenic | 50.0% | |
AGAGTGAGAAGATGTGGTGG+TGG | + | chr3_2:86815709-86815728 | None:intergenic | 50.0% | |
GTCAGAGTGAGAAGATGTGG+TGG | + | chr3_2:86815712-86815731 | None:intergenic | 50.0% | |
GGTGTCAGAGTGAGAAGATG+TGG | + | chr3_2:86815715-86815734 | None:intergenic | 50.0% | |
!!! | CTTGGAGAGGGCTTTTTTGG+TGG | + | chr3_2:86815744-86815763 | None:intergenic | 50.0% |
! | AAAAGAGACCTCGGTGATGG+AGG | - | chr3_2:86815765-86815784 | Msa0434080:intron | 50.0% |
! | CCACTGTGGAGTCTTATCAG+TGG | + | chr3_2:86815817-86815836 | None:intergenic | 50.0% |
CCACTGATAAGACTCCACAG+TGG | - | chr3_2:86815814-86815833 | Msa0434080:intron | 50.0% | |
TGTCTTTGGACCTAATGGCC+CGG | + | chr3_2:86815844-86815863 | None:intergenic | 50.0% | |
!! | GTCGACTCGTACCTGAGTAT+AGG | - | chr3_2:86815898-86815917 | Msa0434080:CDS | 50.0% |
!! | ACAAATGTTGGGCTTGCTGC+AGG | + | chr3_2:86815924-86815943 | None:intergenic | 50.0% |
GCACTCCAACTCACATCGAA+AGG | - | chr3_2:86815953-86815972 | Msa0434080:CDS | 50.0% | |
TCATCATCTCCTTCTGGCGT+CGG | + | chr3_2:86815989-86816008 | None:intergenic | 50.0% | |
ACGCCAGAAGGAGATGATGA+GGG | - | chr3_2:86815989-86816008 | Msa0434080:CDS | 50.0% | |
!! | CCAAAGCACCGTACTACATG+AGG | + | chr3_2:86816127-86816146 | None:intergenic | 50.0% |
CCTCATGTAGTACGGTGCTT+TGG | - | chr3_2:86816124-86816143 | Msa0434080:CDS | 50.0% | |
GTCGGATTGTGGACAGAAGC+TGG | + | chr3_2:86813676-86813695 | None:intergenic | 55.0% | |
TCGTGCCAGAATTCTGCCGA+CGG | - | chr3_2:86813882-86813901 | Msa0434080:CDS | 55.0% | |
GAATGTTAACCAGTGCCCCG+GGG | - | chr3_2:86814333-86814352 | Msa0434080:CDS | 55.0% | |
AGCTGCTTAACCAATGCCCC+GGG | + | chr3_2:86814352-86814371 | None:intergenic | 55.0% | |
ACACCCTCAAGTGTCTGTCC+CGG | - | chr3_2:86815602-86815621 | Msa0434080:intron | 55.0% | |
TTGCCGGGACAGACACTTGA+GGG | + | chr3_2:86815608-86815627 | None:intergenic | 55.0% | |
TTTGCCGGGACAGACACTTG+AGG | + | chr3_2:86815609-86815628 | None:intergenic | 55.0% | |
!! | AGATGTGGTGGTGGTGGTCA+TGG | + | chr3_2:86815700-86815719 | None:intergenic | 55.0% |
!! | GTGAGAAGATGTGGTGGTGG+TGG | + | chr3_2:86815706-86815725 | None:intergenic | 55.0% |
!!! | GGGCTTTTTTGGTGGAGCCA+TGG | + | chr3_2:86815736-86815755 | None:intergenic | 55.0% |
CTTGCTGCAGGCCTATACTC+AGG | + | chr3_2:86815912-86815931 | None:intergenic | 55.0% | |
GACGCCAGAAGGAGATGATG+AGG | - | chr3_2:86815988-86816007 | Msa0434080:CDS | 55.0% | |
AAGGGCCGTCGGCAGAATTC+TGG | + | chr3_2:86813890-86813909 | None:intergenic | 60.0% | |
CGGAGAGTTCGCCGGAGAAA+GGG | + | chr3_2:86813908-86813927 | None:intergenic | 60.0% | |
ACGGAGAGTTCGCCGGAGAA+AGG | + | chr3_2:86813909-86813928 | None:intergenic | 60.0% | |
TACCGGAACGGAGAGTTCGC+CGG | + | chr3_2:86813916-86813935 | None:intergenic | 60.0% | |
GCTGCTTAACCAATGCCCCG+GGG | + | chr3_2:86814351-86814370 | None:intergenic | 60.0% | |
TCTTGTTAACCGGTGCCCCC+GGG | + | chr3_2:86814481-86814500 | None:intergenic | 60.0% | |
! | GTCTTGTTAACCGGTGCCCC+CGG | + | chr3_2:86814482-86814501 | None:intergenic | 60.0% |
CACGTGTGCCTCCATGCAAC+TGG | - | chr3_2:86815646-86815665 | Msa0434080:intron | 60.0% | |
CGCGAAGTCCAGTTGCATGG+AGG | + | chr3_2:86815657-86815676 | None:intergenic | 60.0% | |
AGGCGCGAAGTCCAGTTGCA+TGG | + | chr3_2:86815660-86815679 | None:intergenic | 60.0% | |
!! | GTGGTGGTGGTGGTCATGGT+TGG | + | chr3_2:86815696-86815715 | None:intergenic | 60.0% |
!! | AGACCTCGGTGATGGAGGAG+AGG | - | chr3_2:86815770-86815789 | Msa0434080:intron | 60.0% |
!! | GACCTCGGTGATGGAGGAGA+GGG | - | chr3_2:86815771-86815790 | Msa0434080:intron | 60.0% |
AAGACTCCACAGTGGCGCAC+CGG | - | chr3_2:86815822-86815841 | Msa0434080:intron | 60.0% | |
GGGCCCTCATCATCTCCTTC+TGG | + | chr3_2:86815995-86816014 | None:intergenic | 60.0% | |
TCTGCCGACGGCCCTTTCTC+CGG | - | chr3_2:86813894-86813913 | Msa0434080:CDS | 65.0% | |
TTCGCCGGAGAAAGGGCCGT+CGG | + | chr3_2:86813901-86813920 | None:intergenic | 65.0% | |
CTCCGGCGAACTCTCCGTTC+CGG | - | chr3_2:86813911-86813930 | Msa0434080:CDS | 65.0% | |
TAACCAGTGCCCCGGGGCAT+TGG | - | chr3_2:86814339-86814358 | Msa0434080:CDS | 65.0% | |
TAACCAATGCCCCGGGGCAC+TGG | + | chr3_2:86814345-86814364 | None:intergenic | 65.0% | |
CTTGTTAACCGGTGCCCCCG+GGG | + | chr3_2:86814480-86814499 | None:intergenic | 65.0% | |
GACCCTCTCCTCCATCACCG+AGG | + | chr3_2:86815776-86815795 | None:intergenic | 65.0% | |
AGACTCCACAGTGGCGCACC+GGG | - | chr3_2:86815823-86815842 | Msa0434080:intron | 65.0% | |
GCAAGAGCTCCGACGCCAGA+AGG | - | chr3_2:86815977-86815996 | Msa0434080:CDS | 65.0% | |
! | AACAAGTGCCCCGGGGGCAC+CGG | - | chr3_2:86814469-86814488 | Msa0434080:intron | 70.0% |
AATGGCCCGGTGCGCCACTG+TGG | + | chr3_2:86815831-86815850 | None:intergenic | 70.0% | |
CAGTGGCGCACCGGGCCATT+AGG | - | chr3_2:86815831-86815850 | Msa0434080:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 86813498 | 86816319 | 86813498 | ID=Msa0434080;Name=Msa0434080 |
chr3_2 | mRNA | 86813498 | 86816319 | 86813498 | ID=Msa0434080-mRNA-1;Parent=Msa0434080;Name=Msa0434080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|2|186|322 |
chr3_2 | exon | 86813498 | 86814367 | 86813498 | ID=Msa0434080-mRNA-1:exon:25199;Parent=Msa0434080-mRNA-1 |
chr3_2 | exon | 86815885 | 86816319 | 86815885 | ID=Msa0434080-mRNA-1:exon:25198;Parent=Msa0434080-mRNA-1 |
chr3_2 | five_prime_UTR | 86816170 | 86816319 | 86816170 | ID=Msa0434080-mRNA-1:five_prime_utr;Parent=Msa0434080-mRNA-1 |
chr3_2 | CDS | 86815885 | 86816169 | 86815885 | ID=Msa0434080-mRNA-1:cds;Parent=Msa0434080-mRNA-1 |
chr3_2 | CDS | 86813684 | 86814367 | 86813684 | ID=Msa0434080-mRNA-1:cds;Parent=Msa0434080-mRNA-1 |
chr3_2 | three_prime_UTR | 86813498 | 86813683 | 86813498 | ID=Msa0434080-mRNA-1:three_prime_utr;Parent=Msa0434080-mRNA-1 |
Gene Sequence |
Protein sequence |