AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434080 MtrunA17_Chr3g0140331 93.231 325 12 3 1 322 47 364 0.0 551
Msa0434080 MtrunA17_Chr1g0146231 53.295 349 119 9 6 322 8 344 3.97e-108 318
Msa0434080 MtrunA17_Chr8g0340401 44.384 365 137 12 1 322 1 342 5.35e-80 246
Msa0434080 MtrunA17_Chr8g0372291 39.655 290 115 12 19 281 32 288 5.82e-43 149
Msa0434080 MtrunA17_Chr4g0035891 37.162 296 142 12 1 280 13 280 8.15e-43 149
Msa0434080 MtrunA17_Chr3g0145121 40.520 269 142 10 19 281 29 285 1.59e-40 143
Msa0434080 MtrunA17_Chr1g0199671 35.667 300 128 10 36 275 12 306 2.24e-38 139
Msa0434080 MtrunA17_Chr6g0461591 37.778 225 89 6 103 277 35 258 4.56e-36 130
Msa0434080 MtrunA17_Chr5g0404981 40.708 226 96 7 89 281 150 370 9.89e-35 130
Msa0434080 MtrunA17_Chr7g0253101 41.038 212 82 7 103 275 45 252 1.05e-34 127
Msa0434080 MtrunA17_Chr1g0169431 78.873 71 15 0 210 280 171 241 1.42e-33 124
Msa0434080 MtrunA17_Chr5g0395391 53.211 109 51 0 172 280 231 339 5.92e-33 124
Msa0434080 MtrunA17_Chr5g0395391 49.206 126 49 2 150 274 120 231 5.97e-30 116
Msa0434080 MtrunA17_Chr1g0213161 60.674 89 28 2 208 293 149 233 6.04e-30 114
Msa0434080 MtrunA17_Chr4g0028961 60.465 86 34 0 211 296 232 317 6.72e-30 115
Msa0434080 MtrunA17_Chr2g0326771 75.385 65 16 0 211 275 216 280 2.65e-29 114
Msa0434080 MtrunA17_Chr7g0232671 55.696 79 32 2 200 277 175 251 1.72e-22 94.4
Msa0434080 MtrunA17_Chr7g0232681 34.783 184 102 6 90 271 25 192 2.66e-21 89.7
Msa0434080 MtrunA17_Chr7g0232701 53.947 76 31 1 196 271 62 133 1.54e-20 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434080 AT4G32890.1 49.841 315 114 12 30 322 16 308 1.14e-85 260
Msa0434080 AT5G25830.1 47.592 353 128 11 2 322 4 331 5.24e-85 259
Msa0434080 AT3G60530.1 48.039 204 74 5 88 291 63 234 2.41e-51 170
Msa0434080 AT2G45050.1 44.697 264 105 10 40 288 20 257 3.35e-49 165
Msa0434080 AT4G36240.1 40.234 256 109 7 32 278 11 231 3.39e-39 138
Msa0434080 AT5G66320.2 40.408 245 89 6 89 291 100 329 8.09e-37 135
Msa0434080 AT5G66320.1 40.408 245 89 6 89 291 100 329 8.09e-37 135
Msa0434080 AT3G24050.1 77.941 68 15 0 210 277 193 260 4.76e-33 123
Msa0434080 AT4G34680.1 44.022 184 72 7 98 280 96 249 3.03e-32 121
Msa0434080 AT4G34680.2 44.022 184 72 7 98 280 96 249 3.03e-32 121
Msa0434080 AT1G08010.2 67.073 82 21 1 208 283 217 298 4.41e-32 121
Msa0434080 AT1G08010.1 67.073 82 21 1 208 283 217 298 4.41e-32 121
Msa0434080 AT1G08010.3 67.073 82 21 1 208 283 217 298 4.41e-32 121
Msa0434080 AT3G54810.1 75.000 68 17 0 211 278 229 296 9.00e-32 121
Msa0434080 AT3G54810.2 75.000 68 17 0 211 278 229 296 9.00e-32 121
Msa0434080 AT3G51080.1 73.913 69 18 0 211 279 221 289 4.25e-30 116
Msa0434080 AT1G08000.2 60.227 88 30 1 208 290 215 302 4.59e-30 116
Msa0434080 AT1G08000.1 60.227 88 30 1 208 290 215 302 4.59e-30 116
Msa0434080 AT3G45170.1 62.319 69 26 0 211 279 115 183 5.51e-26 102
Msa0434080 AT2G28340.1 68.254 63 20 0 213 275 193 255 1.21e-24 101

Find 104 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGATTCCTCAGCAAATT+TGG 0.139979 3_2:+86814311 None:intergenic
CTACATGAGGTGCGTGAAAT+CGG 0.267854 3_2:+86813684 None:intergenic
CACGCATTGCATAGTGTCTT+TGG 0.290696 3_2:+86813940 None:intergenic
ACAGTTGATATCTGGATTAA+AGG 0.306992 3_2:-86814265 Msa0434080:CDS
CATAAGCTACAGTTGATATC+TGG 0.309428 3_2:-86814273 Msa0434080:CDS
AAGGGCCGTCGGCAGAATTC+TGG 0.309787 3_2:+86815908 None:intergenic
CAGTGGCGCACCGGGCCATT+AGG 0.332794 3_2:-86813964 Msa0434080:CDS
CATAGTGTCTTTGGACCTAA+TGG 0.339675 3_2:+86813949 None:intergenic
GTGAGAGAGAAAAGCATAAG+AGG 0.370517 3_2:+86816298 None:intergenic
CACGTGTGCCTCCATGCAAC+TGG 0.370780 3_2:-86814149 Msa0434080:CDS
GGGCCCTCATCATCTCCTTC+TGG 0.374473 3_2:+86813803 None:intergenic
ATTGTGGACAGAAGCTGGTT+TGG 0.397002 3_2:+86816127 None:intergenic
TTGCAACAATTGGTGTTGTT+GGG 0.408578 3_2:+86813783 None:intergenic
GTTGCAACAATTGGTGTTGT+TGG 0.409369 3_2:+86813782 None:intergenic
GACACTTGAGGGTGTATTGT+TGG 0.425894 3_2:+86814201 None:intergenic
TGCTTAGTCAACACAAATGT+TGG 0.431309 3_2:+86813862 None:intergenic
CATCACAGCATTATGTTTGA+AGG 0.433831 3_2:-86813751 Msa0434080:CDS
ACAAAGTGTGACAAAGTTTG+TGG 0.433866 3_2:+86816266 None:intergenic
TCTCTTTGATTTCTCTAATG+AGG 0.434233 3_2:-86816040 Msa0434080:CDS
CGGCAAAAGCCCGTAGTAAA+CGG 0.443499 3_2:-86814173 Msa0434080:CDS
TTCGAAAGTGGGGTCTTCAA+TGG 0.445894 3_2:+86816011 None:intergenic
TACATGAGGTGCGTGAAATC+GGG 0.448275 3_2:+86813685 None:intergenic
ATGATCTTGCGCAGCTAGAA+TGG 0.454058 3_2:-86814338 Msa0434080:CDS
TTGCACCTTTCGATGTGAGT+TGG 0.456005 3_2:+86813837 None:intergenic
CTCCGGCGAACTCTCCGTTC+CGG 0.462198 3_2:-86815884 Msa0434080:intron
ACGGAGAGTTCGCCGGAGAA+AGG 0.464710 3_2:+86815889 None:intergenic
AGATGTGGTGGTGGTGGTCA+TGG 0.465812 3_2:+86814098 None:intergenic
GTTTGTGGTGGAATTGTTGT+CGG 0.468374 3_2:+86816104 None:intergenic
GTGGTGGTGGTGGTCATGGT+TGG 0.470501 3_2:+86814102 None:intergenic
TTGCCGGGACAGACACTTGA+GGG 0.471708 3_2:+86814190 None:intergenic
ACAAATGTTGGGCTTGCTGC+AGG 0.475199 3_2:+86813874 None:intergenic
CCTCATGTAGTACGGTGCTT+TGG 0.478377 3_2:-86813671 Msa0434080:exon
GTGTGACAAAGTTTGTGGTT+TGG 0.486157 3_2:+86816271 None:intergenic
TCATCATCTCCTTCTGGCGT+CGG 0.486176 3_2:+86813809 None:intergenic
CGGAGAGTTCGCCGGAGAAA+GGG 0.487872 3_2:+86815890 None:intergenic
ATTAATATTCAAAGCTGCGT+TGG 0.490776 3_2:+86813633 None:intergenic
CTCTTGAGCTTCCATGGGTT+AGG 0.491426 3_2:+86816155 None:intergenic
AATATTCAAAGCTGCGTTGG+AGG 0.492539 3_2:+86813636 None:intergenic
GCTTAGTCAACACAAATGTT+GGG 0.498811 3_2:+86813863 None:intergenic
AGCAGTGTTTACATTGTTTG+TGG 0.499828 3_2:+86816089 None:intergenic
TCTGCCGACGGCCCTTTCTC+CGG 0.501462 3_2:-86815901 Msa0434080:CDS
AGAATTCTGGCACGAATTGT+CGG 0.501620 3_2:+86815921 None:intergenic
GTGGGATTGGTTTCAAGAGG+AGG 0.506926 3_2:+86815958 None:intergenic
GTGGAATTGTTGTCGGATTG+TGG 0.509048 3_2:+86816111 None:intergenic
AGGAGGAGATTCTTCGAAAG+TGG 0.514544 3_2:+86815999 None:intergenic
GATGTTGTAGTTGCAACAAT+TGG 0.517809 3_2:+86813773 None:intergenic
ACACTTGAGGGTGTATTGTT+GGG 0.518688 3_2:+86814202 None:intergenic
AGACTCCACAGTGGCGCACC+GGG 0.518894 3_2:-86813972 Msa0434080:CDS
AAGACTCCACAGTGGCGCAC+CGG 0.525177 3_2:-86813973 Msa0434080:CDS
TTGAGCTTCCATGGGTTAGG+AGG 0.527789 3_2:+86816158 None:intergenic
GAATCATTAGAGTTGGTAGG+AGG 0.531077 3_2:+86815982 None:intergenic
GCAAGAGCTCCGACGCCAGA+AGG 0.533988 3_2:-86813818 Msa0434080:CDS
GTCGGATTGTGGACAGAAGC+TGG 0.535564 3_2:+86816122 None:intergenic
GGAGAATCATTAGAGTTGGT+AGG 0.541668 3_2:+86815979 None:intergenic
ATATCAACTGTAGCTTATGA+AGG 0.545098 3_2:+86814277 None:intergenic
AGGAGGAGAATCATTAGAGT+TGG 0.548174 3_2:+86815975 None:intergenic
ATAATGAAGTGAGAAAGTAT+AGG 0.561648 3_2:+86816229 None:intergenic
GTCGACTCGTACCTGAGTAT+AGG 0.562857 3_2:-86813897 Msa0434080:CDS
CACACGTGACCGTTTACTAC+GGG 0.563431 3_2:+86814164 None:intergenic
AATGGCCCGGTGCGCCACTG+TGG 0.564107 3_2:+86813967 None:intergenic
GGAGGAGATTCTTCGAAAGT+GGG 0.565310 3_2:+86816000 None:intergenic
TGTGGAGTCAGATACAAGTC+AGG 0.567755 3_2:-86813919 Msa0434080:CDS
TACCGGAACGGAGAGTTCGC+CGG 0.569597 3_2:+86815882 None:intergenic
GACGCCAGAAGGAGATGATG+AGG 0.570929 3_2:-86813807 Msa0434080:CDS
TGATCTTGCGCAGCTAGAAT+GGG 0.571023 3_2:-86814337 Msa0434080:CDS
GAAGTGGGATTGGTTTCAAG+AGG 0.577002 3_2:+86815955 None:intergenic
AGAGATCTTCAACGATGAAG+TGG 0.579783 3_2:+86816058 None:intergenic
GTGAGAAGATGTGGTGGTGG+TGG 0.580310 3_2:+86814092 None:intergenic
GCACACGTGACCGTTTACTA+CGG 0.581455 3_2:+86814163 None:intergenic
AGGCGCGAAGTCCAGTTGCA+TGG 0.582876 3_2:+86814138 None:intergenic
TGTCTTTGGACCTAATGGCC+CGG 0.587867 3_2:+86813954 None:intergenic
GACCTCGGTGATGGAGGAGA+GGG 0.591558 3_2:-86814024 Msa0434080:CDS
TTTGCCGGGACAGACACTTG+AGG 0.592935 3_2:+86814189 None:intergenic
ACACCCTCAAGTGTCTGTCC+CGG 0.593472 3_2:-86814193 Msa0434080:CDS
AAAAGAGACCTCGGTGATGG+AGG 0.595010 3_2:-86814030 Msa0434080:CDS
AGAGTGAGAAGATGTGGTGG+TGG 0.596239 3_2:+86814089 None:intergenic
TATAATGGCACGTACCGGAA+CGG 0.606350 3_2:+86815870 None:intergenic
AAGTAGTCATCACCGTTGGA+TGG 0.607107 3_2:+86813727 None:intergenic
AATCAAGTAGTCATCACCGT+TGG 0.609015 3_2:+86813723 None:intergenic
ACGCCAGAAGGAGATGATGA+GGG 0.609091 3_2:-86813806 Msa0434080:CDS
AGACCTCGGTGATGGAGGAG+AGG 0.609530 3_2:-86814025 Msa0434080:CDS
CAACAACACCTCCTAACCCA+TGG 0.609995 3_2:-86816166 Msa0434080:exon
TTCGCCGGAGAAAGGGCCGT+CGG 0.611125 3_2:+86815897 None:intergenic
GCACTCCAACTCACATCGAA+AGG 0.612333 3_2:-86813842 Msa0434080:CDS
TTCACGCACCTCATGTAGTA+CGG 0.615224 3_2:-86813679 Msa0434080:exon
AGTGTTTACATTGTTTGTGG+TGG 0.618078 3_2:+86816092 None:intergenic
CTTGCTGCAGGCCTATACTC+AGG 0.624212 3_2:+86813886 None:intergenic
ATCTTCAACGATGAAGTGGT+CGG 0.624703 3_2:+86816062 None:intergenic
ATCTTCTCACTCTGACACCA+TGG 0.629511 3_2:-86814079 Msa0434080:CDS
CTACTTGATTCATCAACACG+TGG 0.630573 3_2:-86813710 Msa0434080:CDS
TCGTGCCAGAATTCTGCCGA+CGG 0.642132 3_2:-86815913 Msa0434080:CDS
GTCAGAGTGAGAAGATGTGG+TGG 0.644152 3_2:+86814086 None:intergenic
ATGTTTGAAGGACCATCCAA+CGG 0.648434 3_2:-86813739 Msa0434080:CDS
CCAAAGCACCGTACTACATG+AGG 0.651273 3_2:+86813671 None:intergenic
CCACTGTGGAGTCTTATCAG+TGG 0.652363 3_2:+86813981 None:intergenic
TGGTTGGAGAGAGAACTAGA+AGG 0.657111 3_2:+86814118 None:intergenic
CGCGAAGTCCAGTTGCATGG+AGG 0.662375 3_2:+86814141 None:intergenic
GGTGTCAGAGTGAGAAGATG+TGG 0.671117 3_2:+86814083 None:intergenic
ATGGGTGTCCAAATTTGCTG+AGG 0.672775 3_2:-86814319 Msa0434080:CDS
AAGACACTATGCAATGCGTG+TGG 0.676419 3_2:-86813937 Msa0434080:CDS
TACTTGATTCATCAACACGT+GGG 0.690057 3_2:-86813709 Msa0434080:CDS
GAGGAGATTCTTCGAAAGTG+GGG 0.692052 3_2:+86816001 None:intergenic
GACCCTCTCCTCCATCACCG+AGG 0.717630 3_2:+86814022 None:intergenic
CCACTGATAAGACTCCACAG+TGG 0.837860 3_2:-86813981 Msa0434080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAAAAAAAAATATAG+GGG + chr3_2:86814887-86814906 None:intergenic 10.0%
!!! TTGTTTTTATATACAACAAT+TGG - chr3_2:86814014-86814033 Msa0434080:CDS 15.0%
!!! AAATAAAGAGAGTATTATTT+AGG + chr3_2:86814091-86814110 None:intergenic 15.0%
!! ATGTGACAAAATTAAAAATA+GGG + chr3_2:86814504-86814523 None:intergenic 15.0%
!! TATGTGACAAAATTAAAAAT+AGG + chr3_2:86814505-86814524 None:intergenic 15.0%
!! GTTAAAAAAAAAAATATAGG+GGG + chr3_2:86814886-86814905 None:intergenic 15.0%
!! ATATTTGTAATAAAAGCTAA+GGG + chr3_2:86814937-86814956 None:intergenic 15.0%
!! TATATTTGTAATAAAAGCTA+AGG + chr3_2:86814938-86814957 None:intergenic 15.0%
!!! TATTATTTTTGTTTAGAGAA+GGG + chr3_2:86814976-86814995 None:intergenic 15.0%
!!! TTATTATTTTTGTTTAGAGA+AGG + chr3_2:86814977-86814996 None:intergenic 15.0%
!!! TCATTTTTAAGATACTATAT+CGG + chr3_2:86815167-86815186 None:intergenic 15.0%
!! ATATAAAGTAAGAATTCTAA+TGG - chr3_2:86815194-86815213 Msa0434080:intron 15.0%
!!! ATTATGTTATGTATTTTCTA+AGG + chr3_2:86815344-86815363 None:intergenic 15.0%
!! AGAAAATACATAACATAATA+TGG - chr3_2:86815345-86815364 Msa0434080:intron 15.0%
!! TTTCATAAGTATGACAATTA+TGG + chr3_2:86814280-86814299 None:intergenic 20.0%
!!! TCTTAAGATATACCTTTTTT+AGG + chr3_2:86815127-86815146 None:intergenic 20.0%
!! TCTTAAGACAACAATTAAAA+AGG - chr3_2:86815139-86815158 Msa0434080:intron 20.0%
!! ATAATGAAGTGAGAAAGTAT+AGG + chr3_2:86813569-86813588 None:intergenic 25.0%
! AATGGAACAGATAAAATTGT+AGG + chr3_2:86814054-86814073 None:intergenic 25.0%
! CACACATATTAAAGAAAAGT+AGG + chr3_2:86814202-86814221 None:intergenic 25.0%
! CAAAAGTAGAAAAATTGTCT+TGG + chr3_2:86814442-86814461 None:intergenic 25.0%
!! CAAGACAATTTTTCTACTTT+TGG - chr3_2:86814440-86814459 Msa0434080:intron 25.0%
!!! TATAGTCTTTTATTTAGTCG+TGG - chr3_2:86814574-86814593 Msa0434080:intron 25.0%
!!! ATAGTCTTTTATTTAGTCGT+GGG - chr3_2:86814575-86814594 Msa0434080:intron 25.0%
! TAAGAAAATGTGAGGTATAT+GGG - chr3_2:86814601-86814620 Msa0434080:intron 25.0%
!! GAGTGAATTTTGAATTTCAA+GGG - chr3_2:86814631-86814650 Msa0434080:intron 25.0%
!! GATAACACTTTTCCTAAAAA+AGG - chr3_2:86815112-86815131 Msa0434080:intron 25.0%
!!! GTTTTTGATTCAACGTTATT+TGG + chr3_2:86815558-86815577 None:intergenic 25.0%
! TCTCTTTGATTTCTCTAATG+AGG - chr3_2:86813755-86813774 Msa0434080:CDS 30.0%
ATATATATAATGGCACGTAC+CGG + chr3_2:86813933-86813952 None:intergenic 30.0%
TATCTGTTCCATTGAATTTG+AGG - chr3_2:86814061-86814080 Msa0434080:CDS 30.0%
ATCTGTTCCATTGAATTTGA+GGG - chr3_2:86814062-86814081 Msa0434080:CDS 30.0%
!! AAAAATAGGGTCTTGTTAAC+CGG + chr3_2:86814491-86814510 None:intergenic 30.0%
CTAAGAAAATGTGAGGTATA+TGG - chr3_2:86814600-86814619 Msa0434080:intron 30.0%
! GGAGTGAATTTTGAATTTCA+AGG - chr3_2:86814630-86814649 Msa0434080:intron 30.0%
AAATGATTCCTCAGCAAATT+TGG + chr3_2:86815487-86815506 None:intergenic 30.0%
ATATCAACTGTAGCTTATGA+AGG + chr3_2:86815521-86815540 None:intergenic 30.0%
! ACAGTTGATATCTGGATTAA+AGG - chr3_2:86815530-86815549 Msa0434080:intron 30.0%
ATTAATATTCAAAGCTGCGT+TGG + chr3_2:86816165-86816184 None:intergenic 30.0%
CGTCATAAACTAAAAATGGT+AGG + chr3_2:86816221-86816240 None:intergenic 30.0%
CTGTCGTCATAAACTAAAAA+TGG + chr3_2:86816225-86816244 None:intergenic 30.0%
!!! CATTTTTAGTTTATGACGAC+AGG - chr3_2:86816223-86816242 Msa0434080:five_prime_UTR 30.0%
ACAAAGTGTGACAAAGTTTG+TGG + chr3_2:86813532-86813551 None:intergenic 35.0%
! GTTGTTGTTGTTGTTAGGTT+TGG + chr3_2:86813616-86813635 None:intergenic 35.0%
AAAAACTCTTGAGCTTCCAT+GGG + chr3_2:86813648-86813667 None:intergenic 35.0%
AGTGTTTACATTGTTTGTGG+TGG + chr3_2:86813706-86813725 None:intergenic 35.0%
AGCAGTGTTTACATTGTTTG+TGG + chr3_2:86813709-86813728 None:intergenic 35.0%
GAAAAAATTGGAAGTGGGAT+TGG + chr3_2:86813853-86813872 None:intergenic 35.0%
TCGGTGAAAAAATTGGAAGT+GGG + chr3_2:86813858-86813877 None:intergenic 35.0%
CGAATTGTCGGTGAAAAAAT+TGG + chr3_2:86813865-86813884 None:intergenic 35.0%
TTGACTCAACATGTGTAGTT+AGG - chr3_2:86813987-86814006 Msa0434080:CDS 35.0%
TAGGTTTCCCTCAAATTCAA+TGG + chr3_2:86814072-86814091 None:intergenic 35.0%
ATTGGTTAAGCAGCTAAAAG+AGG - chr3_2:86814357-86814376 Msa0434080:intron 35.0%
!!! TGAGGAATCATTTTCAAGTG+AGG - chr3_2:86815494-86815513 Msa0434080:intron 35.0%
! CATAAGCTACAGTTGATATC+TGG - chr3_2:86815522-86815541 Msa0434080:intron 35.0%
GCTTAGTCAACACAAATGTT+GGG + chr3_2:86815935-86815954 None:intergenic 35.0%
TGCTTAGTCAACACAAATGT+TGG + chr3_2:86815936-86815955 None:intergenic 35.0%
!! TTGCAACAATTGGTGTTGTT+GGG + chr3_2:86816015-86816034 None:intergenic 35.0%
GATGTTGTAGTTGCAACAAT+TGG + chr3_2:86816025-86816044 None:intergenic 35.0%
CATCACAGCATTATGTTTGA+AGG - chr3_2:86816044-86816063 Msa0434080:CDS 35.0%
TACTTGATTCATCAACACGT+GGG - chr3_2:86816086-86816105 Msa0434080:CDS 35.0%
GTGTGACAAAGTTTGTGGTT+TGG + chr3_2:86813527-86813546 None:intergenic 40.0%
!! GAGGTGTTGTTGTTGTTGTT+AGG + chr3_2:86813621-86813640 None:intergenic 40.0%
GAAAAACTCTTGAGCTTCCA+TGG + chr3_2:86813649-86813668 None:intergenic 40.0%
! GTTTGTGGTGGAATTGTTGT+CGG + chr3_2:86813694-86813713 None:intergenic 40.0%
ATCTTCAACGATGAAGTGGT+CGG + chr3_2:86813736-86813755 None:intergenic 40.0%
AGAGATCTTCAACGATGAAG+TGG + chr3_2:86813740-86813759 None:intergenic 40.0%
!! GAATCATTAGAGTTGGTAGG+AGG + chr3_2:86813816-86813835 None:intergenic 40.0%
! GGAGAATCATTAGAGTTGGT+AGG + chr3_2:86813819-86813838 None:intergenic 40.0%
AGGAGGAGAATCATTAGAGT+TGG + chr3_2:86813823-86813842 None:intergenic 40.0%
GTCGGTGAAAAAATTGGAAG+TGG + chr3_2:86813859-86813878 None:intergenic 40.0%
AGAATTCTGGCACGAATTGT+CGG + chr3_2:86813877-86813896 None:intergenic 40.0%
GTGGGAACTAAGAAAATGTG+AGG - chr3_2:86814593-86814612 Msa0434080:intron 40.0%
ATGTGAGGTATATGGGATAG+AGG - chr3_2:86814608-86814627 Msa0434080:intron 40.0%
TGTGAGGTATATGGGATAGA+GGG - chr3_2:86814609-86814628 Msa0434080:intron 40.0%
CCTTATGATACACACCTACA+CGG - chr3_2:86815286-86815305 Msa0434080:intron 40.0%
ATATCTTATGTTCGCCGTGT+AGG + chr3_2:86815303-86815322 None:intergenic 40.0%
! ACACTTGAGGGTGTATTGTT+GGG + chr3_2:86815596-86815615 None:intergenic 40.0%
!!! TTTCTTGGAGAGGGCTTTTT+TGG + chr3_2:86815747-86815766 None:intergenic 40.0%
! AGGTCTCTTTTTCTTGGAGA+GGG + chr3_2:86815756-86815775 None:intergenic 40.0%
TCTCCAAGAAAAAGAGACCT+CGG - chr3_2:86815756-86815775 Msa0434080:intron 40.0%
CATAGTGTCTTTGGACCTAA+TGG + chr3_2:86815849-86815868 None:intergenic 40.0%
!! GTTGCAACAATTGGTGTTGT+TGG + chr3_2:86816016-86816035 None:intergenic 40.0%
ATGTTTGAAGGACCATCCAA+CGG - chr3_2:86816056-86816075 Msa0434080:CDS 40.0%
AATCAAGTAGTCATCACCGT+TGG + chr3_2:86816075-86816094 None:intergenic 40.0%
CTACTTGATTCATCAACACG+TGG - chr3_2:86816085-86816104 Msa0434080:CDS 40.0%
AATATTCAAAGCTGCGTTGG+AGG + chr3_2:86816162-86816181 None:intergenic 40.0%
ATTGTGGACAGAAGCTGGTT+TGG + chr3_2:86813671-86813690 None:intergenic 45.0%
GTGGAATTGTTGTCGGATTG+TGG + chr3_2:86813687-86813706 None:intergenic 45.0%
TTCGAAAGTGGGGTCTTCAA+TGG + chr3_2:86813787-86813806 None:intergenic 45.0%
GAGGAGATTCTTCGAAAGTG+GGG + chr3_2:86813797-86813816 None:intergenic 45.0%
GGAGGAGATTCTTCGAAAGT+GGG + chr3_2:86813798-86813817 None:intergenic 45.0%
AGGAGGAGATTCTTCGAAAG+TGG + chr3_2:86813799-86813818 None:intergenic 45.0%
!! GAAGTGGGATTGGTTTCAAG+AGG + chr3_2:86813843-86813862 None:intergenic 45.0%
TATAATGGCACGTACCGGAA+CGG + chr3_2:86813928-86813947 None:intergenic 45.0%
TGGATTCTTAACAAGTGCCC+CGG - chr3_2:86814460-86814479 Msa0434080:intron 45.0%
CCGTGTAGGTGTGTATCATA+AGG + chr3_2:86815289-86815308 None:intergenic 45.0%
ATGATCTTGCGCAGCTAGAA+TGG - chr3_2:86815457-86815476 Msa0434080:intron 45.0%
TGATCTTGCGCAGCTAGAAT+GGG - chr3_2:86815458-86815477 Msa0434080:intron 45.0%
!! ATGGGTGTCCAAATTTGCTG+AGG - chr3_2:86815476-86815495 Msa0434080:intron 45.0%
! GACACTTGAGGGTGTATTGT+TGG + chr3_2:86815597-86815616 None:intergenic 45.0%
TGGTTGGAGAGAGAACTAGA+AGG + chr3_2:86815680-86815699 None:intergenic 45.0%
ATCTTCTCACTCTGACACCA+TGG - chr3_2:86815716-86815735 Msa0434080:intron 45.0%
! GAGGTCTCTTTTTCTTGGAG+AGG + chr3_2:86815757-86815776 None:intergenic 45.0%
! TCACCGAGGTCTCTTTTTCT+TGG + chr3_2:86815762-86815781 None:intergenic 45.0%
AGAAAAAGAGACCTCGGTGA+TGG - chr3_2:86815762-86815781 Msa0434080:intron 45.0%
CACGCATTGCATAGTGTCTT+TGG + chr3_2:86815858-86815877 None:intergenic 45.0%
AAGACACTATGCAATGCGTG+TGG - chr3_2:86815858-86815877 Msa0434080:intron 45.0%
TGTGGAGTCAGATACAAGTC+AGG - chr3_2:86815876-86815895 Msa0434080:intron 45.0%
TTGCACCTTTCGATGTGAGT+TGG + chr3_2:86815961-86815980 None:intergenic 45.0%
AAGTAGTCATCACCGTTGGA+TGG + chr3_2:86816071-86816090 None:intergenic 45.0%
TACATGAGGTGCGTGAAATC+GGG + chr3_2:86816113-86816132 None:intergenic 45.0%
CTACATGAGGTGCGTGAAAT+CGG + chr3_2:86816114-86816133 None:intergenic 45.0%
TTCACGCACCTCATGTAGTA+CGG - chr3_2:86816116-86816135 Msa0434080:CDS 45.0%
!! AATAATTACTATATATATAA+TGG + chr3_2:86813943-86813962 None:intergenic 5.0%
!!! AAATGAATATTATTTTTTTA+AGG - chr3_2:86814309-86814328 Msa0434080:CDS 5.0%
!! TATAAATATATGATAAAAAA+AGG + chr3_2:86814558-86814577 None:intergenic 5.0%
!! TAGTTAAAAAAAAAAATATA+GGG + chr3_2:86814888-86814907 None:intergenic 5.0%
!! ATAGTTAAAAAAAAAAATAT+AGG + chr3_2:86814889-86814908 None:intergenic 5.0%
!!! ATAAATTTTATTATATTTGA+TGG + chr3_2:86815061-86815080 None:intergenic 5.0%
CAACAACACCTCCTAACCCA+TGG - chr3_2:86813629-86813648 Msa0434080:three_prime_UTR 50.0%
!! TTGAGCTTCCATGGGTTAGG+AGG + chr3_2:86813640-86813659 None:intergenic 50.0%
CTCTTGAGCTTCCATGGGTT+AGG + chr3_2:86813643-86813662 None:intergenic 50.0%
!! GTGGGATTGGTTTCAAGAGG+AGG + chr3_2:86813840-86813859 None:intergenic 50.0%
GAGAATGTTAACCAGTGCCC+CGG - chr3_2:86814331-86814350 Msa0434080:CDS 50.0%
AGAATGTTAACCAGTGCCCC+GGG - chr3_2:86814332-86814351 Msa0434080:CDS 50.0%
TAGCTGCTTAACCAATGCCC+CGG + chr3_2:86814353-86814372 None:intergenic 50.0%
GGATTCTTAACAAGTGCCCC+GGG - chr3_2:86814461-86814480 Msa0434080:intron 50.0%
GATTCTTAACAAGTGCCCCG+GGG - chr3_2:86814462-86814481 Msa0434080:intron 50.0%
ATTCTTAACAAGTGCCCCGG+GGG - chr3_2:86814463-86814482 Msa0434080:intron 50.0%
! GTTTACTACGGGCTTTTGCC+GGG + chr3_2:86815623-86815642 None:intergenic 50.0%
! CGTTTACTACGGGCTTTTGC+CGG + chr3_2:86815624-86815643 None:intergenic 50.0%
CGGCAAAAGCCCGTAGTAAA+CGG - chr3_2:86815622-86815641 Msa0434080:intron 50.0%
CACACGTGACCGTTTACTAC+GGG + chr3_2:86815634-86815653 None:intergenic 50.0%
GCACACGTGACCGTTTACTA+CGG + chr3_2:86815635-86815654 None:intergenic 50.0%
AGAGTGAGAAGATGTGGTGG+TGG + chr3_2:86815709-86815728 None:intergenic 50.0%
GTCAGAGTGAGAAGATGTGG+TGG + chr3_2:86815712-86815731 None:intergenic 50.0%
GGTGTCAGAGTGAGAAGATG+TGG + chr3_2:86815715-86815734 None:intergenic 50.0%
!!! CTTGGAGAGGGCTTTTTTGG+TGG + chr3_2:86815744-86815763 None:intergenic 50.0%
! AAAAGAGACCTCGGTGATGG+AGG - chr3_2:86815765-86815784 Msa0434080:intron 50.0%
! CCACTGTGGAGTCTTATCAG+TGG + chr3_2:86815817-86815836 None:intergenic 50.0%
CCACTGATAAGACTCCACAG+TGG - chr3_2:86815814-86815833 Msa0434080:intron 50.0%
TGTCTTTGGACCTAATGGCC+CGG + chr3_2:86815844-86815863 None:intergenic 50.0%
!! GTCGACTCGTACCTGAGTAT+AGG - chr3_2:86815898-86815917 Msa0434080:CDS 50.0%
!! ACAAATGTTGGGCTTGCTGC+AGG + chr3_2:86815924-86815943 None:intergenic 50.0%
GCACTCCAACTCACATCGAA+AGG - chr3_2:86815953-86815972 Msa0434080:CDS 50.0%
TCATCATCTCCTTCTGGCGT+CGG + chr3_2:86815989-86816008 None:intergenic 50.0%
ACGCCAGAAGGAGATGATGA+GGG - chr3_2:86815989-86816008 Msa0434080:CDS 50.0%
!! CCAAAGCACCGTACTACATG+AGG + chr3_2:86816127-86816146 None:intergenic 50.0%
CCTCATGTAGTACGGTGCTT+TGG - chr3_2:86816124-86816143 Msa0434080:CDS 50.0%
GTCGGATTGTGGACAGAAGC+TGG + chr3_2:86813676-86813695 None:intergenic 55.0%
TCGTGCCAGAATTCTGCCGA+CGG - chr3_2:86813882-86813901 Msa0434080:CDS 55.0%
GAATGTTAACCAGTGCCCCG+GGG - chr3_2:86814333-86814352 Msa0434080:CDS 55.0%
AGCTGCTTAACCAATGCCCC+GGG + chr3_2:86814352-86814371 None:intergenic 55.0%
ACACCCTCAAGTGTCTGTCC+CGG - chr3_2:86815602-86815621 Msa0434080:intron 55.0%
TTGCCGGGACAGACACTTGA+GGG + chr3_2:86815608-86815627 None:intergenic 55.0%
TTTGCCGGGACAGACACTTG+AGG + chr3_2:86815609-86815628 None:intergenic 55.0%
!! AGATGTGGTGGTGGTGGTCA+TGG + chr3_2:86815700-86815719 None:intergenic 55.0%
!! GTGAGAAGATGTGGTGGTGG+TGG + chr3_2:86815706-86815725 None:intergenic 55.0%
!!! GGGCTTTTTTGGTGGAGCCA+TGG + chr3_2:86815736-86815755 None:intergenic 55.0%
CTTGCTGCAGGCCTATACTC+AGG + chr3_2:86815912-86815931 None:intergenic 55.0%
GACGCCAGAAGGAGATGATG+AGG - chr3_2:86815988-86816007 Msa0434080:CDS 55.0%
AAGGGCCGTCGGCAGAATTC+TGG + chr3_2:86813890-86813909 None:intergenic 60.0%
CGGAGAGTTCGCCGGAGAAA+GGG + chr3_2:86813908-86813927 None:intergenic 60.0%
ACGGAGAGTTCGCCGGAGAA+AGG + chr3_2:86813909-86813928 None:intergenic 60.0%
TACCGGAACGGAGAGTTCGC+CGG + chr3_2:86813916-86813935 None:intergenic 60.0%
GCTGCTTAACCAATGCCCCG+GGG + chr3_2:86814351-86814370 None:intergenic 60.0%
TCTTGTTAACCGGTGCCCCC+GGG + chr3_2:86814481-86814500 None:intergenic 60.0%
! GTCTTGTTAACCGGTGCCCC+CGG + chr3_2:86814482-86814501 None:intergenic 60.0%
CACGTGTGCCTCCATGCAAC+TGG - chr3_2:86815646-86815665 Msa0434080:intron 60.0%
CGCGAAGTCCAGTTGCATGG+AGG + chr3_2:86815657-86815676 None:intergenic 60.0%
AGGCGCGAAGTCCAGTTGCA+TGG + chr3_2:86815660-86815679 None:intergenic 60.0%
!! GTGGTGGTGGTGGTCATGGT+TGG + chr3_2:86815696-86815715 None:intergenic 60.0%
!! AGACCTCGGTGATGGAGGAG+AGG - chr3_2:86815770-86815789 Msa0434080:intron 60.0%
!! GACCTCGGTGATGGAGGAGA+GGG - chr3_2:86815771-86815790 Msa0434080:intron 60.0%
AAGACTCCACAGTGGCGCAC+CGG - chr3_2:86815822-86815841 Msa0434080:intron 60.0%
GGGCCCTCATCATCTCCTTC+TGG + chr3_2:86815995-86816014 None:intergenic 60.0%
TCTGCCGACGGCCCTTTCTC+CGG - chr3_2:86813894-86813913 Msa0434080:CDS 65.0%
TTCGCCGGAGAAAGGGCCGT+CGG + chr3_2:86813901-86813920 None:intergenic 65.0%
CTCCGGCGAACTCTCCGTTC+CGG - chr3_2:86813911-86813930 Msa0434080:CDS 65.0%
TAACCAGTGCCCCGGGGCAT+TGG - chr3_2:86814339-86814358 Msa0434080:CDS 65.0%
TAACCAATGCCCCGGGGCAC+TGG + chr3_2:86814345-86814364 None:intergenic 65.0%
CTTGTTAACCGGTGCCCCCG+GGG + chr3_2:86814480-86814499 None:intergenic 65.0%
GACCCTCTCCTCCATCACCG+AGG + chr3_2:86815776-86815795 None:intergenic 65.0%
AGACTCCACAGTGGCGCACC+GGG - chr3_2:86815823-86815842 Msa0434080:intron 65.0%
GCAAGAGCTCCGACGCCAGA+AGG - chr3_2:86815977-86815996 Msa0434080:CDS 65.0%
! AACAAGTGCCCCGGGGGCAC+CGG - chr3_2:86814469-86814488 Msa0434080:intron 70.0%
AATGGCCCGGTGCGCCACTG+TGG + chr3_2:86815831-86815850 None:intergenic 70.0%
CAGTGGCGCACCGGGCCATT+AGG - chr3_2:86815831-86815850 Msa0434080:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86813498 86816319 86813498 ID=Msa0434080;Name=Msa0434080
chr3_2 mRNA 86813498 86816319 86813498 ID=Msa0434080-mRNA-1;Parent=Msa0434080;Name=Msa0434080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|2|186|322
chr3_2 exon 86813498 86814367 86813498 ID=Msa0434080-mRNA-1:exon:25199;Parent=Msa0434080-mRNA-1
chr3_2 exon 86815885 86816319 86815885 ID=Msa0434080-mRNA-1:exon:25198;Parent=Msa0434080-mRNA-1
chr3_2 five_prime_UTR 86816170 86816319 86816170 ID=Msa0434080-mRNA-1:five_prime_utr;Parent=Msa0434080-mRNA-1
chr3_2 CDS 86815885 86816169 86815885 ID=Msa0434080-mRNA-1:cds;Parent=Msa0434080-mRNA-1
chr3_2 CDS 86813684 86814367 86813684 ID=Msa0434080-mRNA-1:cds;Parent=Msa0434080-mRNA-1
chr3_2 three_prime_UTR 86813498 86813683 86813498 ID=Msa0434080-mRNA-1:three_prime_utr;Parent=Msa0434080-mRNA-1
Gene Sequence

>Msa0434080

ATGGAAGCTCAAGAGTTTTTCCAAACCAGCTTCTGTCCACAATCCGACAACAATTCCACCACAAACAATGTAAACACTGCTGCTTCCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATGAGGATGTTGCCATTGAAGACCCCACTTTCGAAGAATCTCCTCCTACCAACTCTAATGATTCTCCTCCTCTTGAAACCAATCCCACTTCCAATTTTTTCACCGACAATTCGTGCCAGAATTCTGCCGACGGCCCTTTCTCCGGCGAACTCTCCGTTCCGCAATATGATGATCTTGCGCAGCTAGAATGGGTGTCCAAATTTGCTGAGGAATCATTTTCAAGTGAGGACCTTCATAAGCTACAGTTGATATCTGGATTAAAGGCACCAAATAACGTTGAATCAAAAACTCATGAAGAACGCAACCCAACAATACACCCTCAAGTGTCTGTCCCGGCAAAAGCCCGTAGTAAACGGTCACGTGTGCCTCCATGCAACTGGACTTCGCGCCTTCTAGTTCTCTCTCCAACCATGACCACCACCACCACATCTTCTCACTCTGACACCATGGCTCCACCAAAAAAGCCCTCTCCAAGAAAAAGAGACCTCGGTGATGGAGGAGAGGGTCGCAAGTGTCTTCATTGCGCCACTGATAAGACTCCACAGTGGCGCACCGGGCCATTAGGTCCAAAGACACTATGCAATGCGTGTGGAGTCAGATACAAGTCAGGTCGACTCGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTTGTGTTGACTAAGCACTCCAACTCACATCGAAAGGTGCAAGAGCTCCGACGCCAGAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAGCATTATGTTTGAAGGACCATCCAACGGTGATGACTACTTGATTCATCAACACGTGGGACCCGATTTCACGCACCTCATGTAG

Protein sequence

>Msa0434080

MEAQEFFQTSFCPQSDNNSTTNNVNTAASDHFIVEDLFDFSNEDVAIEDPTFEESPPTNSNDSPPLETNPTSNFFTDNSCQNSADGPFSGELSVPQYDDLAQLEWVSKFAEESFSSEDLHKLQLISGLKAPNNVESKTHEERNPTIHPQVSVPAKARSKRSRVPPCNWTSRLLVLSPTMTTTTTSSHSDTMAPPKKPSPRKRDLGDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHSIMFEGPSNGDDYLIHQHVGPDFTHLM*