Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375280 | XP_013460707.1 | 85.563 | 284 | 16 | 2 | 1 | 283 | 1 | 260 | 6.09e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375280 | sp|O80942|ZFP10_ARATH | 75.439 | 57 | 11 | 1 | 33 | 89 | 18 | 71 | 8.59e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375280 | A0A072UZ72 | 85.563 | 284 | 16 | 2 | 1 | 283 | 1 | 260 | 2.91e-177 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375280 | Msa0415890 | 0.860820 | 1.582545e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375280 | MtrunA17_Chr3g0112181 | 85.563 | 284 | 16 | 2 | 1 | 283 | 1 | 260 | 0.0 | 498 |
| Msa0375280 | MtrunA17_Chr5g0435711 | 65.882 | 85 | 16 | 3 | 8 | 91 | 11 | 83 | 9.23e-30 | 112 |
| Msa0375280 | MtrunA17_Chr5g0435711 | 51.376 | 109 | 41 | 6 | 178 | 283 | 133 | 232 | 6.39e-16 | 75.1 |
| Msa0375280 | MtrunA17_Chr4g0009461 | 65.060 | 83 | 16 | 2 | 33 | 102 | 36 | 118 | 4.74e-29 | 112 |
| Msa0375280 | MtrunA17_Chr5g0400571 | 71.930 | 57 | 15 | 1 | 33 | 89 | 59 | 114 | 5.00e-23 | 95.1 |
| Msa0375280 | MtrunA17_Chr2g0315591 | 49.398 | 83 | 39 | 1 | 10 | 89 | 2 | 84 | 3.00e-19 | 84.3 |
| Msa0375280 | MtrunA17_Chr1g0184381 | 80.952 | 42 | 8 | 0 | 49 | 90 | 29 | 70 | 1.07e-17 | 79.0 |
| Msa0375280 | MtrunA17_Chr7g0239441 | 70.000 | 50 | 15 | 0 | 55 | 104 | 37 | 86 | 9.33e-16 | 72.8 |
| Msa0375280 | MtrunA17_Chr4g0032111 | 62.500 | 48 | 18 | 0 | 54 | 101 | 20 | 67 | 1.31e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375280 | AT2G37740.1 | 75.439 | 57 | 11 | 1 | 33 | 89 | 18 | 71 | 8.73e-24 | 98.6 |
| Msa0375280 | AT4G17810.2 | 69.091 | 55 | 17 | 0 | 30 | 84 | 19 | 73 | 1.48e-22 | 92.0 |
| Msa0375280 | AT4G17810.1 | 69.091 | 55 | 17 | 0 | 30 | 84 | 19 | 73 | 1.52e-22 | 92.8 |
| Msa0375280 | AT5G06070.1 | 74.545 | 55 | 13 | 1 | 35 | 88 | 32 | 86 | 2.72e-21 | 90.1 |
| Msa0375280 | AT3G23130.1 | 82.927 | 41 | 7 | 0 | 47 | 87 | 37 | 77 | 8.63e-18 | 80.1 |
| Msa0375280 | AT2G42410.2 | 78.049 | 41 | 9 | 0 | 48 | 88 | 40 | 80 | 4.07e-17 | 78.6 |
| Msa0375280 | AT2G42410.1 | 78.049 | 41 | 9 | 0 | 48 | 88 | 40 | 80 | 4.07e-17 | 78.6 |
| Msa0375280 | AT2G42410.3 | 78.049 | 41 | 9 | 0 | 48 | 88 | 66 | 106 | 4.49e-17 | 79.0 |
| Msa0375280 | AT3G09290.1 | 63.636 | 44 | 16 | 0 | 55 | 98 | 33 | 76 | 1.88e-12 | 64.7 |
| Msa0375280 | AT3G53820.1 | 68.571 | 35 | 11 | 0 | 55 | 89 | 19 | 53 | 5.46e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTCTTCTTCAATTAGA+TGG | 0.176609 | 3_1:+74951793 | Msa0375280:CDS |
| TGTTGAAACAAGTTTGTCTA+TGG | 0.217128 | 3_1:+74951905 | Msa0375280:CDS |
| CTAATTATTGTTCTAACTTA+TGG | 0.218217 | 3_1:+74951684 | Msa0375280:CDS |
| TTCCCAAGACTTGTTGTTGA+TGG | 0.233876 | 3_1:-74951406 | None:intergenic |
| TTTAGGTCTGCTCAAGCTTT+AGG | 0.265540 | 3_1:+74951519 | Msa0375280:CDS |
| AATGAAGTTCTAATTCATTA+TGG | 0.326510 | 3_1:-74951599 | None:intergenic |
| GGACAAAATAATTCAATGTT+TGG | 0.329063 | 3_1:+74951927 | Msa0375280:CDS |
| AGATCCAAGTCTTCTATTCC+AGG | 0.334055 | 3_1:-74952116 | None:intergenic |
| GAAGAAATGGAAGCTGTCTT+TGG | 0.357856 | 3_1:-74952011 | None:intergenic |
| GGATACTTGGTGGATGTATA+TGG | 0.358230 | 3_1:+74951457 | Msa0375280:CDS |
| CAGTCTGCAGAGTTTGTGGT+TGG | 0.405826 | 3_1:+74952086 | Msa0375280:CDS |
| TAAATATGATGTGGATGAAA+AGG | 0.412314 | 3_1:+74951337 | Msa0375280:CDS |
| GACAGGCAGTGAAGAAGAAA+TGG | 0.412947 | 3_1:-74952024 | None:intergenic |
| TCTTGTGTAGATGCAGTTGA+TGG | 0.423703 | 3_1:-74951744 | None:intergenic |
| AATGAAGGAGTGCCATCATT+TGG | 0.429411 | 3_1:+74951381 | Msa0375280:CDS |
| GAAGAATATGAAGACATGTT+TGG | 0.429891 | 3_1:-74951780 | None:intergenic |
| ATATTCTTCTTCAATTAGAT+GGG | 0.438910 | 3_1:+74951794 | Msa0375280:CDS |
| GAAGATGCAGCTAGGATACT+TGG | 0.443307 | 3_1:+74951444 | Msa0375280:CDS |
| GAACCATCAACAACAAGTCT+TGG | 0.447185 | 3_1:+74951403 | Msa0375280:CDS |
| ACTTCTGTAAAAGAGAGTTT+AGG | 0.451370 | 3_1:+74951502 | Msa0375280:CDS |
| TTGGATCTTGAACTCAGGCT+TGG | 0.454061 | 3_1:+74952131 | Msa0375280:CDS |
| TGGATCTTGAACTCAGGCTT+GGG | 0.459255 | 3_1:+74952132 | Msa0375280:CDS |
| AAACATGGCTTCAGCAAGAC+AGG | 0.470524 | 3_1:-74952041 | None:intergenic |
| TTTGTGGTTGGAGTTAAGCC+TGG | 0.483977 | 3_1:+74952098 | Msa0375280:CDS |
| TTGTTGATGGTTCCAAATGA+TGG | 0.490417 | 3_1:-74951393 | None:intergenic |
| AACCATCAACAACAAGTCTT+GGG | 0.510991 | 3_1:+74951404 | Msa0375280:CDS |
| GTTGAAACAAGTTTGTCTAT+GGG | 0.512192 | 3_1:+74951906 | Msa0375280:CDS |
| AAGTGACATGAGTAAGATCT+TGG | 0.519917 | 3_1:-74951483 | None:intergenic |
| AAGACTTGGATCTTGAACTC+AGG | 0.538252 | 3_1:+74952126 | Msa0375280:CDS |
| GAGTCTCTTGATTCTGAACA+AGG | 0.543085 | 3_1:+74951831 | Msa0375280:CDS |
| AGGTCTGCTCAAGCTTTAGG+TGG | 0.544624 | 3_1:+74951522 | Msa0375280:CDS |
| AACAAGGGCTAGCTAATGCA+AGG | 0.555187 | 3_1:+74951847 | Msa0375280:CDS |
| TAAGCCTGGAATAGAAGACT+TGG | 0.563435 | 3_1:+74952112 | Msa0375280:CDS |
| ATCTTGCACTCACACAATGA+AGG | 0.564898 | 3_1:+74951366 | Msa0375280:CDS |
| GCAGAGATAACTCTTCTACT+TGG | 0.579663 | 3_1:+74951721 | Msa0375280:CDS |
| TATTCTTCTTCAATTAGATG+GGG | 0.582180 | 3_1:+74951795 | Msa0375280:CDS |
| GATGCAGCTAGGATACTTGG+TGG | 0.596955 | 3_1:+74951447 | Msa0375280:CDS |
| TGACATGAGTAAGATCTTGG+TGG | 0.606437 | 3_1:-74951480 | None:intergenic |
| ACTGATGATGATTCATGTGG+TGG | 0.616045 | 3_1:+74951963 | Msa0375280:CDS |
| CTGATGATGATTCATGTGGT+GGG | 0.621213 | 3_1:+74951964 | Msa0375280:CDS |
| ATTCTTCTTCAATTAGATGG+GGG | 0.625385 | 3_1:+74951796 | Msa0375280:CDS |
| AGGAATCACTAAATATGATG+TGG | 0.652487 | 3_1:+74951328 | Msa0375280:CDS |
| AAACATCTATCATTCAAACA+TGG | 0.662081 | 3_1:-74952056 | None:intergenic |
| TGATGATGATTCATGTGGTG+GGG | 0.671193 | 3_1:+74951965 | Msa0375280:CDS |
| AGTCTCTTGATTCTGAACAA+GGG | 0.707551 | 3_1:+74951832 | Msa0375280:CDS |
| ACAAGGGCTAGCTAATGCAA+GGG | 0.711358 | 3_1:+74951848 | Msa0375280:CDS |
| CAAACTGATGATGATTCATG+TGG | 0.716039 | 3_1:+74951960 | Msa0375280:CDS |
| CAGAATCAAGAGACTCCATG+TGG | 0.748859 | 3_1:-74951824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAAGTTCTAATTCATTA+TGG | - | chr3_1:74951602-74951621 | None:intergenic | 20.0% |
| !! | CTAATTATTGTTCTAACTTA+TGG | + | chr3_1:74951684-74951703 | Msa0375280:CDS | 20.0% |
| !! | ATATTCTTCTTCAATTAGAT+GGG | + | chr3_1:74951794-74951813 | Msa0375280:CDS | 20.0% |
| !!! | AATGAAGTTCTAATTCATTA+TGG | - | chr3_1:74951602-74951621 | None:intergenic | 20.0% |
| !! | CTAATTATTGTTCTAACTTA+TGG | + | chr3_1:74951684-74951703 | Msa0375280:CDS | 20.0% |
| !! | ATATTCTTCTTCAATTAGAT+GGG | + | chr3_1:74951794-74951813 | Msa0375280:CDS | 20.0% |
| ! | TAAATATGATGTGGATGAAA+AGG | + | chr3_1:74951337-74951356 | Msa0375280:CDS | 25.0% |
| ! | CATATTCTTCTTCAATTAGA+TGG | + | chr3_1:74951793-74951812 | Msa0375280:CDS | 25.0% |
| ! | TATTCTTCTTCAATTAGATG+GGG | + | chr3_1:74951795-74951814 | Msa0375280:CDS | 25.0% |
| !! | GAACAAATTTTCAAAGGTTA+TGG | + | chr3_1:74951870-74951889 | Msa0375280:CDS | 25.0% |
| ! | GGACAAAATAATTCAATGTT+TGG | + | chr3_1:74951927-74951946 | Msa0375280:CDS | 25.0% |
| ! | AAACATCTATCATTCAAACA+TGG | - | chr3_1:74952059-74952078 | None:intergenic | 25.0% |
| ! | TAAATATGATGTGGATGAAA+AGG | + | chr3_1:74951337-74951356 | Msa0375280:CDS | 25.0% |
| ! | CATATTCTTCTTCAATTAGA+TGG | + | chr3_1:74951793-74951812 | Msa0375280:CDS | 25.0% |
| ! | TATTCTTCTTCAATTAGATG+GGG | + | chr3_1:74951795-74951814 | Msa0375280:CDS | 25.0% |
| !! | GAACAAATTTTCAAAGGTTA+TGG | + | chr3_1:74951870-74951889 | Msa0375280:CDS | 25.0% |
| ! | GGACAAAATAATTCAATGTT+TGG | + | chr3_1:74951927-74951946 | Msa0375280:CDS | 25.0% |
| ! | AAACATCTATCATTCAAACA+TGG | - | chr3_1:74952059-74952078 | None:intergenic | 25.0% |
| AGGAATCACTAAATATGATG+TGG | + | chr3_1:74951328-74951347 | Msa0375280:CDS | 30.0% | |
| ACTTCTGTAAAAGAGAGTTT+AGG | + | chr3_1:74951502-74951521 | Msa0375280:CDS | 30.0% | |
| GAAGAATATGAAGACATGTT+TGG | - | chr3_1:74951783-74951802 | None:intergenic | 30.0% | |
| ATTCTTCTTCAATTAGATGG+GGG | + | chr3_1:74951796-74951815 | Msa0375280:CDS | 30.0% | |
| TGTTGAAACAAGTTTGTCTA+TGG | + | chr3_1:74951905-74951924 | Msa0375280:CDS | 30.0% | |
| GTTGAAACAAGTTTGTCTAT+GGG | + | chr3_1:74951906-74951925 | Msa0375280:CDS | 30.0% | |
| ! | CATCATCAGTTTGCAATTTT+TGG | - | chr3_1:74951953-74951972 | None:intergenic | 30.0% |
| AGGAATCACTAAATATGATG+TGG | + | chr3_1:74951328-74951347 | Msa0375280:CDS | 30.0% | |
| ACTTCTGTAAAAGAGAGTTT+AGG | + | chr3_1:74951502-74951521 | Msa0375280:CDS | 30.0% | |
| GAAGAATATGAAGACATGTT+TGG | - | chr3_1:74951783-74951802 | None:intergenic | 30.0% | |
| ATTCTTCTTCAATTAGATGG+GGG | + | chr3_1:74951796-74951815 | Msa0375280:CDS | 30.0% | |
| TGTTGAAACAAGTTTGTCTA+TGG | + | chr3_1:74951905-74951924 | Msa0375280:CDS | 30.0% | |
| GTTGAAACAAGTTTGTCTAT+GGG | + | chr3_1:74951906-74951925 | Msa0375280:CDS | 30.0% | |
| ! | CATCATCAGTTTGCAATTTT+TGG | - | chr3_1:74951953-74951972 | None:intergenic | 30.0% |
| !! | TTGTTGATGGTTCCAAATGA+TGG | - | chr3_1:74951396-74951415 | None:intergenic | 35.0% |
| AACCATCAACAACAAGTCTT+GGG | + | chr3_1:74951404-74951423 | Msa0375280:CDS | 35.0% | |
| AAGTGACATGAGTAAGATCT+TGG | - | chr3_1:74951486-74951505 | None:intergenic | 35.0% | |
| AGTCTCTTGATTCTGAACAA+GGG | + | chr3_1:74951832-74951851 | Msa0375280:CDS | 35.0% | |
| ! | GCAAGGGAACAAATTTTCAA+AGG | + | chr3_1:74951864-74951883 | Msa0375280:CDS | 35.0% |
| ! | CAAACTGATGATGATTCATG+TGG | + | chr3_1:74951960-74951979 | Msa0375280:CDS | 35.0% |
| !! | TTGTTGATGGTTCCAAATGA+TGG | - | chr3_1:74951396-74951415 | None:intergenic | 35.0% |
| AACCATCAACAACAAGTCTT+GGG | + | chr3_1:74951404-74951423 | Msa0375280:CDS | 35.0% | |
| AAGTGACATGAGTAAGATCT+TGG | - | chr3_1:74951486-74951505 | None:intergenic | 35.0% | |
| AGTCTCTTGATTCTGAACAA+GGG | + | chr3_1:74951832-74951851 | Msa0375280:CDS | 35.0% | |
| ! | GCAAGGGAACAAATTTTCAA+AGG | + | chr3_1:74951864-74951883 | Msa0375280:CDS | 35.0% |
| ! | CAAACTGATGATGATTCATG+TGG | + | chr3_1:74951960-74951979 | Msa0375280:CDS | 35.0% |
| ATCTTGCACTCACACAATGA+AGG | + | chr3_1:74951366-74951385 | Msa0375280:CDS | 40.0% | |
| !! | AATGAAGGAGTGCCATCATT+TGG | + | chr3_1:74951381-74951400 | Msa0375280:CDS | 40.0% |
| GAACCATCAACAACAAGTCT+TGG | + | chr3_1:74951403-74951422 | Msa0375280:CDS | 40.0% | |
| !! | TTCCCAAGACTTGTTGTTGA+TGG | - | chr3_1:74951409-74951428 | None:intergenic | 40.0% |
| ! | GGATACTTGGTGGATGTATA+TGG | + | chr3_1:74951457-74951476 | Msa0375280:CDS | 40.0% |
| TGACATGAGTAAGATCTTGG+TGG | - | chr3_1:74951483-74951502 | None:intergenic | 40.0% | |
| TTTAGGTCTGCTCAAGCTTT+AGG | + | chr3_1:74951519-74951538 | Msa0375280:CDS | 40.0% | |
| GCAGAGATAACTCTTCTACT+TGG | + | chr3_1:74951721-74951740 | Msa0375280:CDS | 40.0% | |
| TCTTGTGTAGATGCAGTTGA+TGG | - | chr3_1:74951747-74951766 | None:intergenic | 40.0% | |
| GAGTCTCTTGATTCTGAACA+AGG | + | chr3_1:74951831-74951850 | Msa0375280:CDS | 40.0% | |
| ! | ACTGATGATGATTCATGTGG+TGG | + | chr3_1:74951963-74951982 | Msa0375280:CDS | 40.0% |
| ! | CTGATGATGATTCATGTGGT+GGG | + | chr3_1:74951964-74951983 | Msa0375280:CDS | 40.0% |
| ! | TGATGATGATTCATGTGGTG+GGG | + | chr3_1:74951965-74951984 | Msa0375280:CDS | 40.0% |
| GAAGAAATGGAAGCTGTCTT+TGG | - | chr3_1:74952014-74952033 | None:intergenic | 40.0% | |
| ! | TTTTCAGTCTGCAGAGTTTG+TGG | + | chr3_1:74952082-74952101 | Msa0375280:CDS | 40.0% |
| TAAGCCTGGAATAGAAGACT+TGG | + | chr3_1:74952112-74952131 | Msa0375280:CDS | 40.0% | |
| AGATCCAAGTCTTCTATTCC+AGG | - | chr3_1:74952119-74952138 | None:intergenic | 40.0% | |
| AAGACTTGGATCTTGAACTC+AGG | + | chr3_1:74952126-74952145 | Msa0375280:CDS | 40.0% | |
| ATCTTGCACTCACACAATGA+AGG | + | chr3_1:74951366-74951385 | Msa0375280:CDS | 40.0% | |
| !! | AATGAAGGAGTGCCATCATT+TGG | + | chr3_1:74951381-74951400 | Msa0375280:CDS | 40.0% |
| GAACCATCAACAACAAGTCT+TGG | + | chr3_1:74951403-74951422 | Msa0375280:CDS | 40.0% | |
| !! | TTCCCAAGACTTGTTGTTGA+TGG | - | chr3_1:74951409-74951428 | None:intergenic | 40.0% |
| ! | GGATACTTGGTGGATGTATA+TGG | + | chr3_1:74951457-74951476 | Msa0375280:CDS | 40.0% |
| TGACATGAGTAAGATCTTGG+TGG | - | chr3_1:74951483-74951502 | None:intergenic | 40.0% | |
| TTTAGGTCTGCTCAAGCTTT+AGG | + | chr3_1:74951519-74951538 | Msa0375280:CDS | 40.0% | |
| GCAGAGATAACTCTTCTACT+TGG | + | chr3_1:74951721-74951740 | Msa0375280:CDS | 40.0% | |
| TCTTGTGTAGATGCAGTTGA+TGG | - | chr3_1:74951747-74951766 | None:intergenic | 40.0% | |
| GAGTCTCTTGATTCTGAACA+AGG | + | chr3_1:74951831-74951850 | Msa0375280:CDS | 40.0% | |
| ! | ACTGATGATGATTCATGTGG+TGG | + | chr3_1:74951963-74951982 | Msa0375280:CDS | 40.0% |
| ! | CTGATGATGATTCATGTGGT+GGG | + | chr3_1:74951964-74951983 | Msa0375280:CDS | 40.0% |
| ! | TGATGATGATTCATGTGGTG+GGG | + | chr3_1:74951965-74951984 | Msa0375280:CDS | 40.0% |
| GAAGAAATGGAAGCTGTCTT+TGG | - | chr3_1:74952014-74952033 | None:intergenic | 40.0% | |
| ! | TTTTCAGTCTGCAGAGTTTG+TGG | + | chr3_1:74952082-74952101 | Msa0375280:CDS | 40.0% |
| TAAGCCTGGAATAGAAGACT+TGG | + | chr3_1:74952112-74952131 | Msa0375280:CDS | 40.0% | |
| AGATCCAAGTCTTCTATTCC+AGG | - | chr3_1:74952119-74952138 | None:intergenic | 40.0% | |
| AAGACTTGGATCTTGAACTC+AGG | + | chr3_1:74952126-74952145 | Msa0375280:CDS | 40.0% | |
| ! | CTTTTGCAGAAGATGCAGCT+AGG | + | chr3_1:74951436-74951455 | Msa0375280:CDS | 45.0% |
| GAAGATGCAGCTAGGATACT+TGG | + | chr3_1:74951444-74951463 | Msa0375280:CDS | 45.0% | |
| TAGATGGGGGAATAACCACA+TGG | + | chr3_1:74951809-74951828 | Msa0375280:CDS | 45.0% | |
| CAGAATCAAGAGACTCCATG+TGG | - | chr3_1:74951827-74951846 | None:intergenic | 45.0% | |
| !! | AACAAGGGCTAGCTAATGCA+AGG | + | chr3_1:74951847-74951866 | Msa0375280:CDS | 45.0% |
| !! | ACAAGGGCTAGCTAATGCAA+GGG | + | chr3_1:74951848-74951867 | Msa0375280:CDS | 45.0% |
| GACAGGCAGTGAAGAAGAAA+TGG | - | chr3_1:74952027-74952046 | None:intergenic | 45.0% | |
| AAACATGGCTTCAGCAAGAC+AGG | - | chr3_1:74952044-74952063 | None:intergenic | 45.0% | |
| TTTGTGGTTGGAGTTAAGCC+TGG | + | chr3_1:74952098-74952117 | Msa0375280:CDS | 45.0% | |
| TTGGATCTTGAACTCAGGCT+TGG | + | chr3_1:74952131-74952150 | Msa0375280:CDS | 45.0% | |
| TGGATCTTGAACTCAGGCTT+GGG | + | chr3_1:74952132-74952151 | Msa0375280:CDS | 45.0% | |
| ! | CTTTTGCAGAAGATGCAGCT+AGG | + | chr3_1:74951436-74951455 | Msa0375280:CDS | 45.0% |
| GAAGATGCAGCTAGGATACT+TGG | + | chr3_1:74951444-74951463 | Msa0375280:CDS | 45.0% | |
| TAGATGGGGGAATAACCACA+TGG | + | chr3_1:74951809-74951828 | Msa0375280:CDS | 45.0% | |
| CAGAATCAAGAGACTCCATG+TGG | - | chr3_1:74951827-74951846 | None:intergenic | 45.0% | |
| !! | AACAAGGGCTAGCTAATGCA+AGG | + | chr3_1:74951847-74951866 | Msa0375280:CDS | 45.0% |
| !! | ACAAGGGCTAGCTAATGCAA+GGG | + | chr3_1:74951848-74951867 | Msa0375280:CDS | 45.0% |
| GACAGGCAGTGAAGAAGAAA+TGG | - | chr3_1:74952027-74952046 | None:intergenic | 45.0% | |
| AAACATGGCTTCAGCAAGAC+AGG | - | chr3_1:74952044-74952063 | None:intergenic | 45.0% | |
| TTTGTGGTTGGAGTTAAGCC+TGG | + | chr3_1:74952098-74952117 | Msa0375280:CDS | 45.0% | |
| TTGGATCTTGAACTCAGGCT+TGG | + | chr3_1:74952131-74952150 | Msa0375280:CDS | 45.0% | |
| TGGATCTTGAACTCAGGCTT+GGG | + | chr3_1:74952132-74952151 | Msa0375280:CDS | 45.0% | |
| GATGCAGCTAGGATACTTGG+TGG | + | chr3_1:74951447-74951466 | Msa0375280:CDS | 50.0% | |
| !! | AGGTCTGCTCAAGCTTTAGG+TGG | + | chr3_1:74951522-74951541 | Msa0375280:CDS | 50.0% |
| CAGTCTGCAGAGTTTGTGGT+TGG | + | chr3_1:74952086-74952105 | Msa0375280:CDS | 50.0% | |
| GATGCAGCTAGGATACTTGG+TGG | + | chr3_1:74951447-74951466 | Msa0375280:CDS | 50.0% | |
| !! | AGGTCTGCTCAAGCTTTAGG+TGG | + | chr3_1:74951522-74951541 | Msa0375280:CDS | 50.0% |
| CAGTCTGCAGAGTTTGTGGT+TGG | + | chr3_1:74952086-74952105 | Msa0375280:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74951324 | 74952175 | 74951324 | ID=Msa0375280;Name=Msa0375280 |
| chr3_1 | mRNA | 74951324 | 74952175 | 74951324 | ID=Msa0375280-mRNA-1;Parent=Msa0375280;Name=Msa0375280-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|283 |
| chr3_1 | exon | 74951324 | 74952175 | 74951324 | ID=Msa0375280-mRNA-1:exon:17485;Parent=Msa0375280-mRNA-1 |
| chr3_1 | CDS | 74951324 | 74952175 | 74951324 | ID=Msa0375280-mRNA-1:cds;Parent=Msa0375280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
