Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415890 | XP_013460707.1 | 85.915 | 284 | 15 | 2 | 1 | 283 | 1 | 260 | 2.27e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415890 | sp|O80942|ZFP10_ARATH | 75.439 | 57 | 11 | 1 | 33 | 89 | 18 | 71 | 8.00e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415890 | A0A072UZ72 | 85.915 | 284 | 15 | 2 | 1 | 283 | 1 | 260 | 1.08e-177 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375280 | Msa0415890 | 0.860820 | 1.582545e-63 | -8.615850e-47 |
| Msa0415890 | Msa0480110 | 0.856604 | 2.875544e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415890 | MtrunA17_Chr3g0112181 | 85.915 | 284 | 15 | 2 | 1 | 283 | 1 | 260 | 0.0 | 499 |
| Msa0415890 | MtrunA17_Chr5g0435711 | 65.882 | 85 | 16 | 3 | 8 | 91 | 11 | 83 | 8.67e-30 | 112 |
| Msa0415890 | MtrunA17_Chr5g0435711 | 52.294 | 109 | 40 | 6 | 178 | 283 | 133 | 232 | 3.02e-16 | 76.3 |
| Msa0415890 | MtrunA17_Chr4g0009461 | 65.060 | 83 | 16 | 2 | 33 | 102 | 36 | 118 | 4.32e-29 | 112 |
| Msa0415890 | MtrunA17_Chr5g0400571 | 71.930 | 57 | 15 | 1 | 33 | 89 | 59 | 114 | 4.33e-23 | 95.1 |
| Msa0415890 | MtrunA17_Chr2g0315591 | 49.398 | 83 | 39 | 1 | 10 | 89 | 2 | 84 | 2.82e-19 | 84.3 |
| Msa0415890 | MtrunA17_Chr1g0184381 | 80.952 | 42 | 8 | 0 | 49 | 90 | 29 | 70 | 9.70e-18 | 79.3 |
| Msa0415890 | MtrunA17_Chr7g0239441 | 70.000 | 50 | 15 | 0 | 55 | 104 | 37 | 86 | 9.43e-16 | 72.8 |
| Msa0415890 | MtrunA17_Chr4g0032111 | 62.500 | 48 | 18 | 0 | 54 | 101 | 20 | 67 | 1.34e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415890 | AT2G37740.1 | 75.439 | 57 | 11 | 1 | 33 | 89 | 18 | 71 | 8.13e-24 | 98.6 |
| Msa0415890 | AT4G17810.2 | 69.091 | 55 | 17 | 0 | 30 | 84 | 19 | 73 | 1.29e-22 | 92.4 |
| Msa0415890 | AT4G17810.1 | 69.091 | 55 | 17 | 0 | 30 | 84 | 19 | 73 | 1.46e-22 | 92.8 |
| Msa0415890 | AT5G06070.1 | 74.545 | 55 | 13 | 1 | 35 | 88 | 32 | 86 | 2.58e-21 | 90.1 |
| Msa0415890 | AT3G23130.1 | 82.927 | 41 | 7 | 0 | 47 | 87 | 37 | 77 | 8.12e-18 | 80.1 |
| Msa0415890 | AT2G42410.2 | 78.049 | 41 | 9 | 0 | 48 | 88 | 40 | 80 | 3.79e-17 | 78.6 |
| Msa0415890 | AT2G42410.1 | 78.049 | 41 | 9 | 0 | 48 | 88 | 40 | 80 | 3.79e-17 | 78.6 |
| Msa0415890 | AT2G42410.3 | 78.049 | 41 | 9 | 0 | 48 | 88 | 66 | 106 | 4.27e-17 | 79.0 |
| Msa0415890 | AT3G09290.1 | 63.636 | 44 | 16 | 0 | 55 | 98 | 33 | 76 | 1.70e-12 | 64.7 |
| Msa0415890 | AT3G53820.1 | 68.571 | 35 | 11 | 0 | 55 | 89 | 19 | 53 | 5.09e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTCTTCTTCAATTAGA+TGG | 0.176609 | 3_2:-62421484 | Msa0415890:CDS |
| TGTTGAAACAAGTTTGTCTA+TGG | 0.217128 | 3_2:-62421372 | Msa0415890:CDS |
| CTAATTATTGTTCTAACTTA+TGG | 0.218217 | 3_2:-62421593 | Msa0415890:CDS |
| TTCCCAAGACTTGTTGTTGA+TGG | 0.233876 | 3_2:+62421871 | None:intergenic |
| TTTAGGTCTGCTCAAGCTTT+AGG | 0.265540 | 3_2:-62421758 | Msa0415890:CDS |
| AATGAAGTTCTAATTCATTA+TGG | 0.326510 | 3_2:+62421678 | None:intergenic |
| GGACAAAATAATTCAATGTT+TGG | 0.329063 | 3_2:-62421350 | Msa0415890:CDS |
| AGATCCAAGTCTTCTATTCC+AGG | 0.334055 | 3_2:+62421161 | None:intergenic |
| GAAGAAATGGAAGCTGTCTT+TGG | 0.357856 | 3_2:+62421266 | None:intergenic |
| GGATACTTGGTGGATGTATA+TGG | 0.358230 | 3_2:-62421820 | Msa0415890:CDS |
| CAGTCTGCAGAGTTTGTGGT+TGG | 0.405826 | 3_2:-62421191 | Msa0415890:CDS |
| TAAATATGATGTGGATGAAA+AGG | 0.412314 | 3_2:-62421940 | Msa0415890:CDS |
| GACAGGCAGTGAAGAAGAAA+TGG | 0.412947 | 3_2:+62421253 | None:intergenic |
| TCTTGTGTAGATGCAGTTGA+TGG | 0.423703 | 3_2:+62421533 | None:intergenic |
| AATGAAGGAGTGCCATCATT+TGG | 0.429411 | 3_2:-62421896 | Msa0415890:CDS |
| GAAGAATATGAAGACATGTT+TGG | 0.429891 | 3_2:+62421497 | None:intergenic |
| ATATTCTTCTTCAATTAGAT+GGG | 0.438910 | 3_2:-62421483 | Msa0415890:CDS |
| GAAGATGCAGCTAGGATACT+TGG | 0.443307 | 3_2:-62421833 | Msa0415890:CDS |
| GAACCATCAACAACAAGTCT+TGG | 0.447185 | 3_2:-62421874 | Msa0415890:CDS |
| ACTTCTGTAAAAGAGAGTTT+AGG | 0.451370 | 3_2:-62421775 | Msa0415890:CDS |
| TTGGATCTTGAACTCAGGCT+TGG | 0.454061 | 3_2:-62421146 | Msa0415890:CDS |
| TGGATCTTGAACTCAGGCTT+GGG | 0.459255 | 3_2:-62421145 | Msa0415890:CDS |
| AAACATGGCTTCAGCAAGAC+AGG | 0.470524 | 3_2:+62421236 | None:intergenic |
| TTTGTGGTTGGAGTTAAGCC+TGG | 0.483977 | 3_2:-62421179 | Msa0415890:CDS |
| TTGTTGATGGTTCCAAATGA+TGG | 0.490417 | 3_2:+62421884 | None:intergenic |
| AACCATCAACAACAAGTCTT+GGG | 0.510991 | 3_2:-62421873 | Msa0415890:CDS |
| GTTGAAACAAGTTTGTCTAT+GGG | 0.512192 | 3_2:-62421371 | Msa0415890:CDS |
| AAGTGACATGAGTAAGATCT+TGG | 0.519917 | 3_2:+62421794 | None:intergenic |
| AAGACTTGGATCTTGAACTC+AGG | 0.538252 | 3_2:-62421151 | Msa0415890:CDS |
| GAGTCTCTTGATTCTGAACA+AGG | 0.543085 | 3_2:-62421446 | Msa0415890:CDS |
| AGGTCTGCTCAAGCTTTAGG+TGG | 0.544624 | 3_2:-62421755 | Msa0415890:CDS |
| AACAAGGGCTAGCTAATGCA+AGG | 0.555187 | 3_2:-62421430 | Msa0415890:CDS |
| TAAGCCTGGAATAGAAGACT+TGG | 0.563435 | 3_2:-62421165 | Msa0415890:CDS |
| ATCTTGCACTCACACAATGA+AGG | 0.564898 | 3_2:-62421911 | Msa0415890:CDS |
| GCAGAGATAACTCTTCTACT+TGG | 0.579663 | 3_2:-62421556 | Msa0415890:CDS |
| TATTCTTCTTCAATTAGATG+GGG | 0.582180 | 3_2:-62421482 | Msa0415890:CDS |
| GATGCAGCTAGGATACTTGG+TGG | 0.596955 | 3_2:-62421830 | Msa0415890:CDS |
| TGACATGAGTAAGATCTTGG+TGG | 0.606437 | 3_2:+62421797 | None:intergenic |
| ACTGATGATGATTCATGTGG+TGG | 0.616045 | 3_2:-62421314 | Msa0415890:CDS |
| CTGATGATGATTCATGTGGT+GGG | 0.621213 | 3_2:-62421313 | Msa0415890:CDS |
| ATTCTTCTTCAATTAGATGG+GGG | 0.625385 | 3_2:-62421481 | Msa0415890:CDS |
| AGGAATCACTAAATATGATG+TGG | 0.652487 | 3_2:-62421949 | Msa0415890:CDS |
| AAACATCTATCATTCAAACA+TGG | 0.662081 | 3_2:+62421221 | None:intergenic |
| TGATGATGATTCATGTGGTG+GGG | 0.671193 | 3_2:-62421312 | Msa0415890:CDS |
| AGTCTCTTGATTCTGAACAA+GGG | 0.707551 | 3_2:-62421445 | Msa0415890:CDS |
| ACAAGGGCTAGCTAATGCAA+GGG | 0.711358 | 3_2:-62421429 | Msa0415890:CDS |
| CAAACTGATGATGATTCATG+TGG | 0.716039 | 3_2:-62421317 | Msa0415890:CDS |
| CAGAATCAAGAGACTCCATG+TGG | 0.748859 | 3_2:+62421453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAAGTTCTAATTCATTA+TGG | + | chr3_2:62421402-62421421 | None:intergenic | 20.0% |
| !! | CTAATTATTGTTCTAACTTA+TGG | - | chr3_2:62421484-62421503 | Msa0415890:CDS | 20.0% |
| !! | ATATTCTTCTTCAATTAGAT+GGG | - | chr3_2:62421594-62421613 | Msa0415890:CDS | 20.0% |
| !!! | AATGAAGTTCTAATTCATTA+TGG | + | chr3_2:62421402-62421421 | None:intergenic | 20.0% |
| !! | CTAATTATTGTTCTAACTTA+TGG | - | chr3_2:62421484-62421503 | Msa0415890:CDS | 20.0% |
| !! | ATATTCTTCTTCAATTAGAT+GGG | - | chr3_2:62421594-62421613 | Msa0415890:CDS | 20.0% |
| ! | TAAATATGATGTGGATGAAA+AGG | - | chr3_2:62421137-62421156 | Msa0415890:CDS | 25.0% |
| ! | CATATTCTTCTTCAATTAGA+TGG | - | chr3_2:62421593-62421612 | Msa0415890:CDS | 25.0% |
| ! | TATTCTTCTTCAATTAGATG+GGG | - | chr3_2:62421595-62421614 | Msa0415890:CDS | 25.0% |
| !! | GAACAAATTTTCAAAGGTTA+TGG | - | chr3_2:62421670-62421689 | Msa0415890:CDS | 25.0% |
| ! | GGACAAAATAATTCAATGTT+TGG | - | chr3_2:62421727-62421746 | Msa0415890:CDS | 25.0% |
| ! | AAACATCTATCATTCAAACA+TGG | + | chr3_2:62421859-62421878 | None:intergenic | 25.0% |
| ! | TAAATATGATGTGGATGAAA+AGG | - | chr3_2:62421137-62421156 | Msa0415890:CDS | 25.0% |
| ! | CATATTCTTCTTCAATTAGA+TGG | - | chr3_2:62421593-62421612 | Msa0415890:CDS | 25.0% |
| ! | TATTCTTCTTCAATTAGATG+GGG | - | chr3_2:62421595-62421614 | Msa0415890:CDS | 25.0% |
| !! | GAACAAATTTTCAAAGGTTA+TGG | - | chr3_2:62421670-62421689 | Msa0415890:CDS | 25.0% |
| ! | GGACAAAATAATTCAATGTT+TGG | - | chr3_2:62421727-62421746 | Msa0415890:CDS | 25.0% |
| ! | AAACATCTATCATTCAAACA+TGG | + | chr3_2:62421859-62421878 | None:intergenic | 25.0% |
| AGGAATCACTAAATATGATG+TGG | - | chr3_2:62421128-62421147 | Msa0415890:CDS | 30.0% | |
| ACTTCTGTAAAAGAGAGTTT+AGG | - | chr3_2:62421302-62421321 | Msa0415890:CDS | 30.0% | |
| GAAGAATATGAAGACATGTT+TGG | + | chr3_2:62421583-62421602 | None:intergenic | 30.0% | |
| ATTCTTCTTCAATTAGATGG+GGG | - | chr3_2:62421596-62421615 | Msa0415890:CDS | 30.0% | |
| TGTTGAAACAAGTTTGTCTA+TGG | - | chr3_2:62421705-62421724 | Msa0415890:CDS | 30.0% | |
| GTTGAAACAAGTTTGTCTAT+GGG | - | chr3_2:62421706-62421725 | Msa0415890:CDS | 30.0% | |
| ! | CATCATCAGTTTGCAATTTT+TGG | + | chr3_2:62421753-62421772 | None:intergenic | 30.0% |
| AGGAATCACTAAATATGATG+TGG | - | chr3_2:62421128-62421147 | Msa0415890:CDS | 30.0% | |
| ACTTCTGTAAAAGAGAGTTT+AGG | - | chr3_2:62421302-62421321 | Msa0415890:CDS | 30.0% | |
| GAAGAATATGAAGACATGTT+TGG | + | chr3_2:62421583-62421602 | None:intergenic | 30.0% | |
| ATTCTTCTTCAATTAGATGG+GGG | - | chr3_2:62421596-62421615 | Msa0415890:CDS | 30.0% | |
| TGTTGAAACAAGTTTGTCTA+TGG | - | chr3_2:62421705-62421724 | Msa0415890:CDS | 30.0% | |
| GTTGAAACAAGTTTGTCTAT+GGG | - | chr3_2:62421706-62421725 | Msa0415890:CDS | 30.0% | |
| ! | CATCATCAGTTTGCAATTTT+TGG | + | chr3_2:62421753-62421772 | None:intergenic | 30.0% |
| !! | TTGTTGATGGTTCCAAATGA+TGG | + | chr3_2:62421196-62421215 | None:intergenic | 35.0% |
| AACCATCAACAACAAGTCTT+GGG | - | chr3_2:62421204-62421223 | Msa0415890:CDS | 35.0% | |
| AAGTGACATGAGTAAGATCT+TGG | + | chr3_2:62421286-62421305 | None:intergenic | 35.0% | |
| AGTCTCTTGATTCTGAACAA+GGG | - | chr3_2:62421632-62421651 | Msa0415890:CDS | 35.0% | |
| ! | GCAAGGGAACAAATTTTCAA+AGG | - | chr3_2:62421664-62421683 | Msa0415890:CDS | 35.0% |
| ! | CAAACTGATGATGATTCATG+TGG | - | chr3_2:62421760-62421779 | Msa0415890:CDS | 35.0% |
| !! | TTGTTGATGGTTCCAAATGA+TGG | + | chr3_2:62421196-62421215 | None:intergenic | 35.0% |
| AACCATCAACAACAAGTCTT+GGG | - | chr3_2:62421204-62421223 | Msa0415890:CDS | 35.0% | |
| AAGTGACATGAGTAAGATCT+TGG | + | chr3_2:62421286-62421305 | None:intergenic | 35.0% | |
| AGTCTCTTGATTCTGAACAA+GGG | - | chr3_2:62421632-62421651 | Msa0415890:CDS | 35.0% | |
| ! | GCAAGGGAACAAATTTTCAA+AGG | - | chr3_2:62421664-62421683 | Msa0415890:CDS | 35.0% |
| ! | CAAACTGATGATGATTCATG+TGG | - | chr3_2:62421760-62421779 | Msa0415890:CDS | 35.0% |
| ATCTTGCACTCACACAATGA+AGG | - | chr3_2:62421166-62421185 | Msa0415890:CDS | 40.0% | |
| !! | AATGAAGGAGTGCCATCATT+TGG | - | chr3_2:62421181-62421200 | Msa0415890:CDS | 40.0% |
| GAACCATCAACAACAAGTCT+TGG | - | chr3_2:62421203-62421222 | Msa0415890:CDS | 40.0% | |
| !! | TTCCCAAGACTTGTTGTTGA+TGG | + | chr3_2:62421209-62421228 | None:intergenic | 40.0% |
| ! | GGATACTTGGTGGATGTATA+TGG | - | chr3_2:62421257-62421276 | Msa0415890:CDS | 40.0% |
| TGACATGAGTAAGATCTTGG+TGG | + | chr3_2:62421283-62421302 | None:intergenic | 40.0% | |
| TTTAGGTCTGCTCAAGCTTT+AGG | - | chr3_2:62421319-62421338 | Msa0415890:CDS | 40.0% | |
| GCAGAGATAACTCTTCTACT+TGG | - | chr3_2:62421521-62421540 | Msa0415890:CDS | 40.0% | |
| TCTTGTGTAGATGCAGTTGA+TGG | + | chr3_2:62421547-62421566 | None:intergenic | 40.0% | |
| GAGTCTCTTGATTCTGAACA+AGG | - | chr3_2:62421631-62421650 | Msa0415890:CDS | 40.0% | |
| ! | ACTGATGATGATTCATGTGG+TGG | - | chr3_2:62421763-62421782 | Msa0415890:CDS | 40.0% |
| ! | CTGATGATGATTCATGTGGT+GGG | - | chr3_2:62421764-62421783 | Msa0415890:CDS | 40.0% |
| ! | TGATGATGATTCATGTGGTG+GGG | - | chr3_2:62421765-62421784 | Msa0415890:CDS | 40.0% |
| GAAGAAATGGAAGCTGTCTT+TGG | + | chr3_2:62421814-62421833 | None:intergenic | 40.0% | |
| ! | TTTTCAGTCTGCAGAGTTTG+TGG | - | chr3_2:62421882-62421901 | Msa0415890:CDS | 40.0% |
| TAAGCCTGGAATAGAAGACT+TGG | - | chr3_2:62421912-62421931 | Msa0415890:CDS | 40.0% | |
| AGATCCAAGTCTTCTATTCC+AGG | + | chr3_2:62421919-62421938 | None:intergenic | 40.0% | |
| AAGACTTGGATCTTGAACTC+AGG | - | chr3_2:62421926-62421945 | Msa0415890:CDS | 40.0% | |
| ATCTTGCACTCACACAATGA+AGG | - | chr3_2:62421166-62421185 | Msa0415890:CDS | 40.0% | |
| !! | AATGAAGGAGTGCCATCATT+TGG | - | chr3_2:62421181-62421200 | Msa0415890:CDS | 40.0% |
| GAACCATCAACAACAAGTCT+TGG | - | chr3_2:62421203-62421222 | Msa0415890:CDS | 40.0% | |
| !! | TTCCCAAGACTTGTTGTTGA+TGG | + | chr3_2:62421209-62421228 | None:intergenic | 40.0% |
| ! | GGATACTTGGTGGATGTATA+TGG | - | chr3_2:62421257-62421276 | Msa0415890:CDS | 40.0% |
| TGACATGAGTAAGATCTTGG+TGG | + | chr3_2:62421283-62421302 | None:intergenic | 40.0% | |
| TTTAGGTCTGCTCAAGCTTT+AGG | - | chr3_2:62421319-62421338 | Msa0415890:CDS | 40.0% | |
| GCAGAGATAACTCTTCTACT+TGG | - | chr3_2:62421521-62421540 | Msa0415890:CDS | 40.0% | |
| TCTTGTGTAGATGCAGTTGA+TGG | + | chr3_2:62421547-62421566 | None:intergenic | 40.0% | |
| GAGTCTCTTGATTCTGAACA+AGG | - | chr3_2:62421631-62421650 | Msa0415890:CDS | 40.0% | |
| ! | ACTGATGATGATTCATGTGG+TGG | - | chr3_2:62421763-62421782 | Msa0415890:CDS | 40.0% |
| ! | CTGATGATGATTCATGTGGT+GGG | - | chr3_2:62421764-62421783 | Msa0415890:CDS | 40.0% |
| ! | TGATGATGATTCATGTGGTG+GGG | - | chr3_2:62421765-62421784 | Msa0415890:CDS | 40.0% |
| GAAGAAATGGAAGCTGTCTT+TGG | + | chr3_2:62421814-62421833 | None:intergenic | 40.0% | |
| ! | TTTTCAGTCTGCAGAGTTTG+TGG | - | chr3_2:62421882-62421901 | Msa0415890:CDS | 40.0% |
| TAAGCCTGGAATAGAAGACT+TGG | - | chr3_2:62421912-62421931 | Msa0415890:CDS | 40.0% | |
| AGATCCAAGTCTTCTATTCC+AGG | + | chr3_2:62421919-62421938 | None:intergenic | 40.0% | |
| AAGACTTGGATCTTGAACTC+AGG | - | chr3_2:62421926-62421945 | Msa0415890:CDS | 40.0% | |
| ! | CTTTTGCAGAAGATGCAGCT+AGG | - | chr3_2:62421236-62421255 | Msa0415890:CDS | 45.0% |
| GAAGATGCAGCTAGGATACT+TGG | - | chr3_2:62421244-62421263 | Msa0415890:CDS | 45.0% | |
| TAGATGGGGGAATAACCACA+TGG | - | chr3_2:62421609-62421628 | Msa0415890:CDS | 45.0% | |
| CAGAATCAAGAGACTCCATG+TGG | + | chr3_2:62421627-62421646 | None:intergenic | 45.0% | |
| !! | AACAAGGGCTAGCTAATGCA+AGG | - | chr3_2:62421647-62421666 | Msa0415890:CDS | 45.0% |
| !! | ACAAGGGCTAGCTAATGCAA+GGG | - | chr3_2:62421648-62421667 | Msa0415890:CDS | 45.0% |
| GACAGGCAGTGAAGAAGAAA+TGG | + | chr3_2:62421827-62421846 | None:intergenic | 45.0% | |
| AAACATGGCTTCAGCAAGAC+AGG | + | chr3_2:62421844-62421863 | None:intergenic | 45.0% | |
| TTTGTGGTTGGAGTTAAGCC+TGG | - | chr3_2:62421898-62421917 | Msa0415890:CDS | 45.0% | |
| TTGGATCTTGAACTCAGGCT+TGG | - | chr3_2:62421931-62421950 | Msa0415890:CDS | 45.0% | |
| TGGATCTTGAACTCAGGCTT+GGG | - | chr3_2:62421932-62421951 | Msa0415890:CDS | 45.0% | |
| ! | CTTTTGCAGAAGATGCAGCT+AGG | - | chr3_2:62421236-62421255 | Msa0415890:CDS | 45.0% |
| GAAGATGCAGCTAGGATACT+TGG | - | chr3_2:62421244-62421263 | Msa0415890:CDS | 45.0% | |
| TAGATGGGGGAATAACCACA+TGG | - | chr3_2:62421609-62421628 | Msa0415890:CDS | 45.0% | |
| CAGAATCAAGAGACTCCATG+TGG | + | chr3_2:62421627-62421646 | None:intergenic | 45.0% | |
| !! | AACAAGGGCTAGCTAATGCA+AGG | - | chr3_2:62421647-62421666 | Msa0415890:CDS | 45.0% |
| !! | ACAAGGGCTAGCTAATGCAA+GGG | - | chr3_2:62421648-62421667 | Msa0415890:CDS | 45.0% |
| GACAGGCAGTGAAGAAGAAA+TGG | + | chr3_2:62421827-62421846 | None:intergenic | 45.0% | |
| AAACATGGCTTCAGCAAGAC+AGG | + | chr3_2:62421844-62421863 | None:intergenic | 45.0% | |
| TTTGTGGTTGGAGTTAAGCC+TGG | - | chr3_2:62421898-62421917 | Msa0415890:CDS | 45.0% | |
| TTGGATCTTGAACTCAGGCT+TGG | - | chr3_2:62421931-62421950 | Msa0415890:CDS | 45.0% | |
| TGGATCTTGAACTCAGGCTT+GGG | - | chr3_2:62421932-62421951 | Msa0415890:CDS | 45.0% | |
| GATGCAGCTAGGATACTTGG+TGG | - | chr3_2:62421247-62421266 | Msa0415890:CDS | 50.0% | |
| !! | AGGTCTGCTCAAGCTTTAGG+TGG | - | chr3_2:62421322-62421341 | Msa0415890:CDS | 50.0% |
| CAGTCTGCAGAGTTTGTGGT+TGG | - | chr3_2:62421886-62421905 | Msa0415890:CDS | 50.0% | |
| GATGCAGCTAGGATACTTGG+TGG | - | chr3_2:62421247-62421266 | Msa0415890:CDS | 50.0% | |
| !! | AGGTCTGCTCAAGCTTTAGG+TGG | - | chr3_2:62421322-62421341 | Msa0415890:CDS | 50.0% |
| CAGTCTGCAGAGTTTGTGGT+TGG | - | chr3_2:62421886-62421905 | Msa0415890:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 62421124 | 62421975 | 62421124 | ID=Msa0415890;Name=Msa0415890 |
| chr3_2 | mRNA | 62421124 | 62421975 | 62421124 | ID=Msa0415890-mRNA-1;Parent=Msa0415890;Name=Msa0415890-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|283 |
| chr3_2 | exon | 62421124 | 62421975 | 62421124 | ID=Msa0415890-mRNA-1:exon:13459;Parent=Msa0415890-mRNA-1 |
| chr3_2 | CDS | 62421124 | 62421975 | 62421124 | ID=Msa0415890-mRNA-1:cds;Parent=Msa0415890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
