Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376210 | ACJ83958.1 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 2.39e-82 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376210 | sp|Q9FGM1|PYL8_ARATH | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 6.49e-60 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376210 | B7FGS9 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 1.14e-82 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375980 | Msa0376210 | 0.916468 | 1.718463e-85 | -8.615850e-47 |
| Msa0376210 | Msa0424620 | 0.821692 | 3.526490e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376210 | MtrunA17_Chr3g0126471 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 2.95e-86 | 249 |
| Msa0376210 | MtrunA17_Chr1g0158871 | 88.034 | 117 | 13 | 1 | 4 | 119 | 1 | 117 | 4.82e-72 | 213 |
| Msa0376210 | MtrunA17_Chr8g0347191 | 71.429 | 119 | 34 | 0 | 2 | 120 | 54 | 172 | 8.96e-59 | 181 |
| Msa0376210 | MtrunA17_Chr7g0243271 | 58.491 | 106 | 43 | 1 | 15 | 119 | 7 | 112 | 1.15e-38 | 128 |
| Msa0376210 | MtrunA17_Chr1g0151661 | 49.550 | 111 | 50 | 1 | 16 | 120 | 28 | 138 | 1.48e-36 | 123 |
| Msa0376210 | MtrunA17_Chr3g0114121 | 50.926 | 108 | 51 | 2 | 15 | 120 | 60 | 167 | 4.45e-34 | 117 |
| Msa0376210 | MtrunA17_Chr4g0005501 | 46.154 | 117 | 58 | 2 | 8 | 119 | 32 | 148 | 1.11e-31 | 111 |
| Msa0376210 | MtrunA17_Chr5g0437611 | 50.476 | 105 | 49 | 2 | 19 | 120 | 44 | 148 | 3.14e-31 | 109 |
| Msa0376210 | MtrunA17_Chr5g0411391 | 49.515 | 103 | 50 | 1 | 20 | 120 | 43 | 145 | 1.95e-30 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376210 | AT5G53160.1 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 3.42e-61 | 184 |
| Msa0376210 | AT5G53160.2 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 6.60e-61 | 185 |
| Msa0376210 | AT4G27920.1 | 68.644 | 118 | 32 | 2 | 4 | 120 | 1 | 114 | 3.70e-56 | 172 |
| Msa0376210 | AT1G01360.1 | 71.552 | 116 | 31 | 1 | 5 | 120 | 7 | 120 | 1.36e-55 | 171 |
| Msa0376210 | AT4G01026.1 | 65.323 | 124 | 37 | 2 | 1 | 120 | 1 | 122 | 1.22e-49 | 157 |
| Msa0376210 | AT2G26040.1 | 50.495 | 101 | 49 | 1 | 21 | 120 | 22 | 122 | 8.05e-35 | 119 |
| Msa0376210 | AT2G38310.1 | 54.545 | 99 | 43 | 1 | 23 | 119 | 41 | 139 | 1.50e-34 | 119 |
| Msa0376210 | AT5G05440.1 | 51.923 | 104 | 48 | 2 | 19 | 120 | 43 | 146 | 1.90e-33 | 115 |
| Msa0376210 | AT2G40330.1 | 48.544 | 103 | 51 | 1 | 19 | 119 | 46 | 148 | 5.15e-31 | 110 |
| Msa0376210 | AT5G45860.1 | 52.427 | 103 | 41 | 2 | 18 | 119 | 1 | 96 | 1.15e-29 | 105 |
| Msa0376210 | AT5G45870.1 | 55.556 | 90 | 39 | 1 | 31 | 119 | 7 | 96 | 4.48e-29 | 103 |
| Msa0376210 | AT4G17870.1 | 51.485 | 101 | 47 | 1 | 21 | 119 | 17 | 117 | 6.81e-29 | 103 |
| Msa0376210 | AT1G73000.1 | 45.714 | 105 | 51 | 1 | 21 | 119 | 37 | 141 | 7.27e-28 | 101 |
| Msa0376210 | AT4G18620.1 | 47.000 | 100 | 46 | 1 | 27 | 119 | 2 | 101 | 3.23e-27 | 99.0 |
| Msa0376210 | AT5G46790.2 | 50.000 | 102 | 49 | 1 | 21 | 120 | 44 | 145 | 1.60e-22 | 88.2 |
| Msa0376210 | AT5G46790.1 | 50.000 | 102 | 49 | 1 | 21 | 120 | 44 | 145 | 1.60e-22 | 88.2 |
Find 33 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3_1:+76255282 | Msa0376210:intron |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3_1:+76255466 | Msa0376210:CDS |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3_1:+76255479 | Msa0376210:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3_1:+76255388 | Msa0376210:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3_1:-76254618 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3_1:+76255485 | Msa0376210:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3_1:+76255358 | Msa0376210:CDS |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3_1:+76255458 | Msa0376210:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3_1:+76255420 | Msa0376210:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3_1:+76255329 | Msa0376210:CDS |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3_1:+76255486 | Msa0376210:CDS |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3_1:-76255415 | None:intergenic |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3_1:+76255290 | Msa0376210:intron |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3_1:-76255369 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3_1:+76255359 | Msa0376210:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3_1:+76255342 | Msa0376210:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3_1:-76255447 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3_1:-76254570 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3_1:+76255287 | Msa0376210:intron |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3_1:+76254518 | Msa0376210:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3_1:-76255322 | None:intergenic |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3_1:+76255423 | Msa0376210:CDS |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3_1:+76254552 | Msa0376210:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3_1:+76255469 | Msa0376210:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3_1:-76255337 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3_1:+76255389 | Msa0376210:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3_1:+76255341 | Msa0376210:CDS |
| TCGGCGATGGAGAAAATGAA+CGG | 0.670990 | 3_1:+76254480 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3_1:+76255336 | Msa0376210:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3_1:+76254512 | Msa0376210:CDS |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3_1:+76255343 | Msa0376210:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3_1:+76254495 | Msa0376210:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3_1:-76254529 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | + | chr3_1:76254696-76254715 | Msa0376210:intron | 10.0% |
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | + | chr3_1:76254696-76254715 | Msa0376210:intron | 10.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | - | chr3_1:76254942-76254961 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | + | chr3_1:76255050-76255069 | Msa0376210:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | - | chr3_1:76254942-76254961 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | + | chr3_1:76255050-76255069 | Msa0376210:intron | 15.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | - | chr3_1:76254627-76254646 | None:intergenic | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | - | chr3_1:76254669-76254688 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | + | chr3_1:76255270-76255289 | Msa0376210:intron | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | - | chr3_1:76254627-76254646 | None:intergenic | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | - | chr3_1:76254669-76254688 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | + | chr3_1:76255270-76255289 | Msa0376210:intron | 25.0% |
| TGATATTACGATGTAGAGTT+TGG | + | chr3_1:76255156-76255175 | Msa0376210:intron | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | + | chr3_1:76255230-76255249 | Msa0376210:intron | 30.0% | |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | + | chr3_1:76255275-76255294 | Msa0376210:intron | 30.0% |
| ! | ACGAATGGTTTATATTTCTG+CGG | - | chr3_1:76255325-76255344 | None:intergenic | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | + | chr3_1:76255420-76255439 | Msa0376210:CDS | 30.0% |
| ATTCTAAGCATCAGGATTAT+TGG | + | chr3_1:76255466-76255485 | Msa0376210:CDS | 30.0% | |
| TGATATTACGATGTAGAGTT+TGG | + | chr3_1:76255156-76255175 | Msa0376210:intron | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | + | chr3_1:76255230-76255249 | Msa0376210:intron | 30.0% | |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | + | chr3_1:76255275-76255294 | Msa0376210:intron | 30.0% |
| ! | ACGAATGGTTTATATTTCTG+CGG | - | chr3_1:76255325-76255344 | None:intergenic | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | + | chr3_1:76255420-76255439 | Msa0376210:CDS | 30.0% |
| ATTCTAAGCATCAGGATTAT+TGG | + | chr3_1:76255466-76255485 | Msa0376210:CDS | 30.0% | |
| ATGAACGGAACTGAAAACAA+CGG | + | chr3_1:76254495-76254514 | Msa0376210:CDS | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | - | chr3_1:76254621-76254640 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | - | chr3_1:76254898-76254917 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | + | chr3_1:76255329-76255348 | Msa0376210:CDS | 35.0% | |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | + | chr3_1:76255388-76255407 | Msa0376210:CDS | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | + | chr3_1:76255389-76255408 | Msa0376210:CDS | 35.0% |
| ! | AACTAGTACTGAAAGATTGG+AGG | + | chr3_1:76255423-76255442 | Msa0376210:CDS | 35.0% |
| GAATATGCTCATTGTCATCA+AGG | - | chr3_1:76255450-76255469 | None:intergenic | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | + | chr3_1:76255458-76255477 | Msa0376210:CDS | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | + | chr3_1:76254495-76254514 | Msa0376210:CDS | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | - | chr3_1:76254621-76254640 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | - | chr3_1:76254898-76254917 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | + | chr3_1:76255329-76255348 | Msa0376210:CDS | 35.0% | |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | + | chr3_1:76255388-76255407 | Msa0376210:CDS | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | + | chr3_1:76255389-76255408 | Msa0376210:CDS | 35.0% |
| ! | AACTAGTACTGAAAGATTGG+AGG | + | chr3_1:76255423-76255442 | Msa0376210:CDS | 35.0% |
| GAATATGCTCATTGTCATCA+AGG | - | chr3_1:76255450-76255469 | None:intergenic | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | + | chr3_1:76255458-76255477 | Msa0376210:CDS | 35.0% | |
| !!! | TCCAGCACTGACACTTTTAA+TGG | + | chr3_1:76254743-76254762 | Msa0376210:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | - | chr3_1:76254747-76254766 | None:intergenic | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | + | chr3_1:76254747-76254766 | Msa0376210:intron | 40.0% |
| GATTCTGCCATGTTTCTCAT+TGG | + | chr3_1:76254888-76254907 | Msa0376210:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | - | chr3_1:76254965-76254984 | None:intergenic | 40.0% |
| ATGTAATTCGCATGTGTCAG+TGG | - | chr3_1:76255017-76255036 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | - | chr3_1:76255284-76255303 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | + | chr3_1:76255282-76255301 | Msa0376210:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | - | chr3_1:76255372-76255391 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | - | chr3_1:76255418-76255437 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | + | chr3_1:76255469-76255488 | Msa0376210:CDS | 40.0% | |
| !! | GGATTATTGGTGGTGATCAT+AGG | + | chr3_1:76255479-76255498 | Msa0376210:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | + | chr3_1:76254743-76254762 | Msa0376210:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | - | chr3_1:76254747-76254766 | None:intergenic | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | + | chr3_1:76254747-76254766 | Msa0376210:intron | 40.0% |
| GATTCTGCCATGTTTCTCAT+TGG | + | chr3_1:76254888-76254907 | Msa0376210:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | - | chr3_1:76254965-76254984 | None:intergenic | 40.0% |
| ATGTAATTCGCATGTGTCAG+TGG | - | chr3_1:76255017-76255036 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | - | chr3_1:76255284-76255303 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | + | chr3_1:76255282-76255301 | Msa0376210:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | - | chr3_1:76255372-76255391 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | - | chr3_1:76255418-76255437 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | + | chr3_1:76255469-76255488 | Msa0376210:CDS | 40.0% | |
| !! | GGATTATTGGTGGTGATCAT+AGG | + | chr3_1:76255479-76255498 | Msa0376210:CDS | 40.0% |
| ! | CAACGGAGTGTTTAACACCA+CGG | + | chr3_1:76254512-76254531 | Msa0376210:CDS | 45.0% |
| AGTGTTTAACACCACGGAGA+TGG | + | chr3_1:76254518-76254537 | Msa0376210:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | + | chr3_1:76254552-76254571 | Msa0376210:CDS | 45.0% | |
| !! | GAAGAACACTGATTCTGTCC+AGG | - | chr3_1:76254573-76254592 | None:intergenic | 45.0% |
| CTTCTGATGAAATGCGTGTC+TGG | + | chr3_1:76254968-76254987 | Msa0376210:intron | 45.0% | |
| ATGAAGCACAGCACATACAC+TGG | - | chr3_1:76255096-76255115 | None:intergenic | 45.0% | |
| TACGATGTAGAGTTTGGCTG+TGG | + | chr3_1:76255162-76255181 | Msa0376210:intron | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | + | chr3_1:76255287-76255306 | Msa0376210:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | + | chr3_1:76255359-76255378 | Msa0376210:CDS | 45.0% | |
| !! | TTGGTGGTGATCATAGGCTT+AGG | + | chr3_1:76255485-76255504 | Msa0376210:CDS | 45.0% |
| ! | CAACGGAGTGTTTAACACCA+CGG | + | chr3_1:76254512-76254531 | Msa0376210:CDS | 45.0% |
| AGTGTTTAACACCACGGAGA+TGG | + | chr3_1:76254518-76254537 | Msa0376210:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | + | chr3_1:76254552-76254571 | Msa0376210:CDS | 45.0% | |
| !! | GAAGAACACTGATTCTGTCC+AGG | - | chr3_1:76254573-76254592 | None:intergenic | 45.0% |
| CTTCTGATGAAATGCGTGTC+TGG | + | chr3_1:76254968-76254987 | Msa0376210:intron | 45.0% | |
| ATGAAGCACAGCACATACAC+TGG | - | chr3_1:76255096-76255115 | None:intergenic | 45.0% | |
| TACGATGTAGAGTTTGGCTG+TGG | + | chr3_1:76255162-76255181 | Msa0376210:intron | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | + | chr3_1:76255287-76255306 | Msa0376210:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | + | chr3_1:76255359-76255378 | Msa0376210:CDS | 45.0% | |
| TCTGATGTACTCCATCTCCG+TGG | - | chr3_1:76254532-76254551 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | - | chr3_1:76254997-76255016 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | + | chr3_1:76255290-76255309 | Msa0376210:intron | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | + | chr3_1:76255358-76255377 | Msa0376210:CDS | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | - | chr3_1:76254532-76254551 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | - | chr3_1:76254997-76255016 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | + | chr3_1:76255290-76255309 | Msa0376210:intron | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | + | chr3_1:76255358-76255377 | Msa0376210:CDS | 50.0% | |
| GTCTGGTATCCGACACGTGT+TGG | + | chr3_1:76254985-76255004 | Msa0376210:intron | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | + | chr3_1:76255336-76255355 | Msa0376210:CDS | 55.0% | |
| ACCACACACCTGCTCACGAA+TGG | - | chr3_1:76255340-76255359 | None:intergenic | 55.0% | |
| GTCTGGTATCCGACACGTGT+TGG | + | chr3_1:76254985-76255004 | Msa0376210:intron | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | + | chr3_1:76255336-76255355 | Msa0376210:CDS | 55.0% | |
| ACCACACACCTGCTCACGAA+TGG | - | chr3_1:76255340-76255359 | None:intergenic | 55.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | + | chr3_1:76255341-76255360 | Msa0376210:CDS | 60.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | + | chr3_1:76255342-76255361 | Msa0376210:CDS | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | + | chr3_1:76255343-76255362 | Msa0376210:CDS | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | + | chr3_1:76255341-76255360 | Msa0376210:CDS | 60.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | + | chr3_1:76255342-76255361 | Msa0376210:CDS | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | + | chr3_1:76255343-76255362 | Msa0376210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 76254486 | 76255507 | 76254486 | ID=Msa0376210;Name=Msa0376210 |
| chr3_1 | mRNA | 76254486 | 76255507 | 76254486 | ID=Msa0376210-mRNA-1;Parent=Msa0376210;Name=Msa0376210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|120 |
| chr3_1 | exon | 76254486 | 76254629 | 76254486 | ID=Msa0376210-mRNA-1:exon:17999;Parent=Msa0376210-mRNA-1 |
| chr3_1 | exon | 76255292 | 76255507 | 76255292 | ID=Msa0376210-mRNA-1:exon:18000;Parent=Msa0376210-mRNA-1 |
| chr3_1 | CDS | 76254486 | 76254629 | 76254486 | ID=Msa0376210-mRNA-1:cds;Parent=Msa0376210-mRNA-1 |
| chr3_1 | CDS | 76255292 | 76255507 | 76255292 | ID=Msa0376210-mRNA-1:cds;Parent=Msa0376210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
