Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375980 | XP_003602205.1 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 3.43e-144 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375980 | sp|Q9FGM1|PYL8_ARATH | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.68e-104 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375980 | G7J6S4 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 1.64e-144 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0375980 | 0.812472 | 4.167280e-51 | -8.615850e-47 |
| Msa0038870 | Msa0375980 | 0.820172 | 7.892059e-53 | -8.615850e-47 |
| Msa0074750 | Msa0375980 | 0.813764 | 2.169787e-51 | -8.615850e-47 |
| Msa0092170 | Msa0375980 | 0.803762 | 2.986531e-49 | -8.615850e-47 |
| Msa0093420 | Msa0375980 | 0.807735 | 4.371370e-50 | -8.615850e-47 |
| Msa0118540 | Msa0375980 | 0.820763 | 5.776236e-53 | -8.615850e-47 |
| Msa0137820 | Msa0375980 | 0.809401 | 1.926753e-50 | -8.615850e-47 |
| Msa0140110 | Msa0375980 | 0.827559 | 1.463344e-54 | -8.615850e-47 |
| Msa0159420 | Msa0375980 | 0.802807 | 4.708603e-49 | -8.615850e-47 |
| Msa0183870 | Msa0375980 | 0.820759 | 5.787801e-53 | -8.615850e-47 |
| Msa0194480 | Msa0375980 | 0.809910 | 1.497890e-50 | -8.615850e-47 |
| Msa0236630 | Msa0375980 | 0.805302 | 1.425552e-49 | -8.615850e-47 |
| Msa0375980 | Msa0376210 | 0.916468 | 1.718463e-85 | -8.615850e-47 |
| Msa0375980 | Msa0415430 | 0.826308 | 2.912783e-54 | -8.615850e-47 |
| Msa0375980 | Msa0424620 | 0.914465 | 1.856559e-84 | -8.615850e-47 |
| Msa0375980 | Msa0455590 | 0.812778 | 3.572438e-51 | -8.615850e-47 |
| Msa0375980 | Msa0485850 | 0.825506 | 4.516807e-54 | -8.615850e-47 |
| Msa0375980 | Msa0489610 | 0.820600 | 6.294726e-53 | -8.615850e-47 |
| Msa0375980 | Msa0524600 | 0.834136 | 3.568753e-56 | -8.615850e-47 |
| Msa0375980 | Msa0527740 | 0.801974 | 6.988505e-49 | -8.615850e-47 |
| Msa0375980 | Msa0534410 | 0.821710 | 3.493940e-53 | -8.615850e-47 |
| Msa0375980 | Msa0542560 | 0.814158 | 1.776204e-51 | -8.615850e-47 |
| Msa0375980 | Msa0577200 | -0.811755 | 5.972865e-51 | -8.615850e-47 |
| Msa0375980 | Msa0588240 | 0.806466 | 8.113842e-50 | -8.615850e-47 |
| Msa0375980 | Msa0590650 | 0.810776 | 9.740183e-51 | -8.615850e-47 |
| Msa0375980 | Msa0591710 | 0.811524 | 6.707715e-51 | -8.615850e-47 |
| Msa0375980 | Msa0600450 | 0.821973 | 3.036281e-53 | -8.615850e-47 |
| Msa0375980 | Msa0604290 | 0.805530 | 1.277018e-49 | -8.615850e-47 |
| Msa0375980 | Msa0630950 | 0.807737 | 4.366243e-50 | -8.615850e-47 |
| Msa0375980 | Msa0640940 | 0.813920 | 2.004497e-51 | -8.615850e-47 |
| Msa0375980 | Msa0670660 | 0.802117 | 6.533188e-49 | -8.615850e-47 |
| Msa0375980 | Msa0679360 | 0.814944 | 1.190092e-51 | -8.615850e-47 |
| Msa0375980 | Msa0693790 | 0.801571 | 8.454987e-49 | -8.615850e-47 |
| Msa0375980 | Msa0721230 | 0.813166 | 2.937224e-51 | -8.615850e-47 |
| Msa0375980 | Msa0750330 | -0.817430 | 3.310641e-52 | -8.615850e-47 |
| Msa0375980 | Msa0805420 | 0.800301 | 1.536816e-48 | -8.615850e-47 |
| Msa0375980 | Msa0820530 | -0.808995 | 2.355116e-50 | -8.615850e-47 |
| Msa0375980 | Msa0822170 | 0.801862 | 7.369064e-49 | -8.615850e-47 |
| Msa0375980 | Msa0830210 | 0.819934 | 8.946899e-53 | -8.615850e-47 |
| Msa0375980 | Msa0832700 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0375980 | Msa0835280 | 0.805691 | 1.181313e-49 | -8.615850e-47 |
| Msa0375980 | Msa0879860 | 0.811216 | 7.821523e-51 | -8.615850e-47 |
| Msa0375980 | Msa0898660 | 0.806687 | 7.287670e-50 | -8.615850e-47 |
| Msa0375980 | Msa0924150 | -0.817514 | 3.170934e-52 | -8.615850e-47 |
| Msa0375980 | Msa0947800 | 0.805095 | 1.574805e-49 | -8.615850e-47 |
| Msa0375980 | Msa0963090 | -0.822786 | 1.966479e-53 | -8.615850e-47 |
| Msa0375980 | Msa0998590 | 0.816312 | 5.900942e-52 | -8.615850e-47 |
| Msa0375980 | Msa1023180 | 0.830640 | 2.621438e-55 | -8.615850e-47 |
| Msa0375980 | Msa1043050 | 0.833580 | 4.914021e-56 | -8.615850e-47 |
| Msa0375980 | Msa1081790 | -0.801594 | 8.364973e-49 | -8.615850e-47 |
| Msa0375980 | Msa1096550 | 0.810827 | 9.497422e-51 | -8.615850e-47 |
| Msa0375980 | Msa1122780 | 0.807036 | 6.149480e-50 | -8.615850e-47 |
| Msa0375980 | Msa1150710 | 0.830305 | 3.165786e-55 | -8.615850e-47 |
| Msa0375980 | Msa1200320 | 0.811725 | 6.064005e-51 | -8.615850e-47 |
| Msa0375980 | Msa1205480 | 0.805939 | 1.047692e-49 | -8.615850e-47 |
| Msa0375980 | Msa1205590 | 0.810943 | 8.964433e-51 | -8.615850e-47 |
| Msa0375980 | Msa1206100 | 0.824152 | 9.422321e-54 | -8.615850e-47 |
| Msa0375980 | Msa1225800 | 0.800925 | 1.146412e-48 | -8.615850e-47 |
| Msa0375980 | Msa1303580 | 0.802411 | 5.681453e-49 | -8.615850e-47 |
| Msa0375980 | Msa1329550 | 0.826922 | 2.079637e-54 | -8.615850e-47 |
| Msa0375980 | Msa1339190 | 0.815238 | 1.023950e-51 | -8.615850e-47 |
| Msa0375980 | Msa1340020 | 0.804381 | 2.219907e-49 | -8.615850e-47 |
| Msa0375980 | Msa1372290 | 0.813958 | 1.966415e-51 | -8.615850e-47 |
| Msa0375980 | Msa1423910 | 0.808801 | 2.591239e-50 | -8.615850e-47 |
| Msa0375980 | Msa1447890 | 0.815176 | 1.057159e-51 | -8.615850e-47 |
| Msa0375980 | Msa1448630 | 0.843073 | 1.753318e-58 | -8.615850e-47 |
| Msa0375980 | Msa1458030 | 0.810880 | 9.250325e-51 | -8.615850e-47 |
| Msa0266360 | Msa0375980 | 0.801438 | 9.004816e-49 | -8.615850e-47 |
| Msa0296920 | Msa0375980 | 0.815153 | 1.069488e-51 | -8.615850e-47 |
| Msa0310430 | Msa0375980 | 0.815347 | 9.684406e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375980 | MtrunA17_Chr3g0126471 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 3.16e-148 | 409 |
| Msa0375980 | MtrunA17_Chr1g0158871 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.46e-122 | 344 |
| Msa0375980 | MtrunA17_Chr8g0347191 | 74.074 | 189 | 49 | 0 | 2 | 190 | 54 | 242 | 5.95e-104 | 299 |
| Msa0375980 | MtrunA17_Chr3g0114121 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 6.46e-59 | 184 |
| Msa0375980 | MtrunA17_Chr5g0437611 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 7.45e-57 | 178 |
| Msa0375980 | MtrunA17_Chr7g0243271 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.18e-55 | 174 |
| Msa0375980 | MtrunA17_Chr4g0005501 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 5.28e-53 | 169 |
| Msa0375980 | MtrunA17_Chr1g0151661 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.30e-52 | 167 |
| Msa0375980 | MtrunA17_Chr5g0411391 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 9.34e-50 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375980 | AT5G53160.2 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.73e-105 | 301 |
| Msa0375980 | AT1G01360.1 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.79e-98 | 283 |
| Msa0375980 | AT4G27920.1 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.86e-92 | 268 |
| Msa0375980 | AT4G01026.1 | 67.876 | 193 | 56 | 2 | 1 | 189 | 1 | 191 | 3.68e-90 | 263 |
| Msa0375980 | AT5G53160.1 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.56e-60 | 185 |
| Msa0375980 | AT5G05440.1 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.91e-53 | 169 |
| Msa0375980 | AT2G40330.1 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.92e-53 | 169 |
| Msa0375980 | AT2G38310.1 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.46e-53 | 169 |
| Msa0375980 | AT2G26040.1 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.72e-51 | 163 |
| Msa0375980 | AT4G17870.1 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 3.54e-48 | 156 |
| Msa0375980 | AT1G73000.1 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.30e-43 | 145 |
| Msa0375980 | AT5G45870.1 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 1.11e-39 | 133 |
| Msa0375980 | AT5G46790.2 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.24e-39 | 135 |
| Msa0375980 | AT5G46790.1 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.24e-39 | 135 |
| Msa0375980 | AT5G45860.1 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.27e-38 | 130 |
| Msa0375980 | AT4G18620.1 | 45.161 | 155 | 78 | 1 | 31 | 178 | 6 | 160 | 1.79e-35 | 122 |
Find 95 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3_1:+75963913 | None:intergenic |
| ACTTGTAGCATTTGCTTATT+TGG | 0.168243 | 3_1:-75963601 | Msa0375980:three_prime_UTR |
| TATATGCTGGTTTCTCTCTT+TGG | 0.244441 | 3_1:-75963554 | Msa0375980:three_prime_UTR |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3_1:-75965952 | Msa0375980:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3_1:+75963810 | None:intergenic |
| CGGTGGCGTTTCGCGTTTAT+CGG | 0.267009 | 3_1:-75966772 | Msa0375980:five_prime_UTR |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3_1:-75965768 | Msa0375980:CDS |
| TCTGAATCCAGTACAGTAAA+AGG | 0.316826 | 3_1:-75963498 | Msa0375980:three_prime_UTR |
| TTCTGCCACGGATGAAGCTT+CGG | 0.318939 | 3_1:-75963695 | Msa0375980:three_prime_UTR |
| TCTGCCACGGATGAAGCTTC+GGG | 0.319763 | 3_1:-75963694 | Msa0375980:three_prime_UTR |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3_1:+75963914 | None:intergenic |
| GATTCAATTACCAGGGTTCC+TGG | 0.344614 | 3_1:+75963892 | None:intergenic |
| ATGAGAGAGAGAAGAGTTGT+TGG | 0.373877 | 3_1:-75966935 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3_1:-75965755 | Msa0375980:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3_1:-75963773 | Msa0375980:CDS |
| GTCATGTTCTTTCTGTATAT+AGG | 0.398250 | 3_1:-75963440 | Msa0375980:three_prime_UTR |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3_1:-75965846 | Msa0375980:CDS |
| AATTTCTCTGTTATATATGC+TGG | 0.404315 | 3_1:-75963567 | Msa0375980:three_prime_UTR |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3_1:-75963919 | Msa0375980:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3_1:+75966615 | None:intergenic |
| CTTTCCGATCATGGAGGCTT+AGG | 0.425609 | 3_1:-75963669 | Msa0375980:three_prime_UTR |
| GAGAGAAGAGTTGTTGGTGG+TGG | 0.426685 | 3_1:-75966929 | Msa0375980:five_prime_UTR |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3_1:-75965749 | Msa0375980:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3_1:-75965876 | Msa0375980:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3_1:+75963853 | None:intergenic |
| TTCTTTCTGTATATAGGTGC+TGG | 0.454716 | 3_1:-75963434 | Msa0375980:three_prime_UTR |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3_1:-75965776 | Msa0375980:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3_1:-75965814 | Msa0375980:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3_1:-75965905 | Msa0375980:CDS |
| CGGAGATCGAATTTCCGTTC+CGG | 0.468419 | 3_1:+75966840 | None:intergenic |
| CCACAAAAGATTCAATTACC+AGG | 0.481100 | 3_1:+75963884 | None:intergenic |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3_1:+75963920 | None:intergenic |
| CTGCCACGGATGAAGCTTCG+GGG | 0.493315 | 3_1:-75963693 | Msa0375980:three_prime_UTR |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3_1:-75965748 | Msa0375980:intron |
| AGTACAGTAAAAGGTGAAGA+AGG | 0.503831 | 3_1:-75963489 | Msa0375980:three_prime_UTR |
| AAGTATCCTCAGCTAAATGA+TGG | 0.505902 | 3_1:+75963366 | None:intergenic |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3_1:+75963921 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3_1:+75965819 | None:intergenic |
| CGGCGAGTTTCAGCGATGGA+AGG | 0.512456 | 3_1:+75966860 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3_1:-75963791 | Msa0375980:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3_1:-75965944 | Msa0375980:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3_1:-75963750 | Msa0375980:CDS |
| TAAGGCTTCAACGAAGTAGC+AGG | 0.523056 | 3_1:+75963828 | None:intergenic |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3_1:+75965865 | None:intergenic |
| CGATAAACGCGAAACGCCAC+CGG | 0.526157 | 3_1:+75966773 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3_1:-75965875 | Msa0375980:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3_1:-75965892 | Msa0375980:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3_1:+75965787 | None:intergenic |
| CGTTTCGCGTTTATCGGCGA+TGG | 0.529187 | 3_1:-75966766 | Msa0375980:exon |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3_1:+75966663 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3_1:-75965947 | Msa0375980:intron |
| GAAGTAGCAGGTCTCATCCT+TGG | 0.540678 | 3_1:+75963840 | None:intergenic |
| GTCTCCTAAGCCTCCATGAT+CGG | 0.542393 | 3_1:+75963665 | None:intergenic |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3_1:-75966715 | Msa0375980:CDS |
| AGAGAGAGAAGAGTTGTTGG+TGG | 0.546359 | 3_1:-75966932 | Msa0375980:five_prime_UTR |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3_1:+75965912 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3_1:-75963910 | Msa0375980:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3_1:-75965811 | Msa0375980:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3_1:+75963739 | None:intergenic |
| ATCGCTGAAACTCGCCGGAA+CGG | 0.567042 | 3_1:-75966854 | Msa0375980:five_prime_UTR |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3_1:-75966681 | Msa0375980:CDS |
| TCGTTCTAAGATTCGATCGC+CGG | 0.571352 | 3_1:-75966792 | Msa0375980:five_prime_UTR |
| TGCCACGGATGAAGCTTCGG+GGG | 0.571357 | 3_1:-75963692 | Msa0375980:three_prime_UTR |
| TTCTAAGATTCGATCGCCGG+TGG | 0.572116 | 3_1:-75966789 | Msa0375980:five_prime_UTR |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3_1:-75965765 | Msa0375980:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3_1:-75963787 | Msa0375980:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3_1:+75965897 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3_1:-75965845 | Msa0375980:CDS |
| ATATAGGTGCTGGTGAAAGT+TGG | 0.586962 | 3_1:-75963424 | Msa0375980:three_prime_UTR |
| CTTCCATCGCTGAAACTCGC+CGG | 0.592161 | 3_1:-75966859 | Msa0375980:five_prime_UTR |
| TGGAGGCTTAGGAGACGGAC+TGG | 0.592862 | 3_1:-75963658 | Msa0375980:three_prime_UTR |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3_1:-75963727 | Msa0375980:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3_1:-75965893 | Msa0375980:CDS |
| CACAAAAGATTCAATTACCA+GGG | 0.601688 | 3_1:+75963885 | None:intergenic |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3_1:-75963786 | Msa0375980:CDS |
| TGATGGAAGACCAGGAACCC+TGG | 0.609392 | 3_1:-75963902 | Msa0375980:CDS |
| TGGCTGAGAACTTTCTGCCA+CGG | 0.611360 | 3_1:-75963707 | Msa0375980:exon |
| TAACTATTGATTCCGACGAT+CGG | 0.617217 | 3_1:+75966820 | None:intergenic |
| TTAGGAGACGGACTGGCAAG+TGG | 0.619547 | 3_1:-75963651 | Msa0375980:three_prime_UTR |
| AAAATTCCATCATTTAGCTG+AGG | 0.621012 | 3_1:-75963372 | Msa0375980:three_prime_UTR |
| GAGTTGTTGGTGGTGGATGA+CGG | 0.624155 | 3_1:-75966922 | Msa0375980:five_prime_UTR |
| GATCATGGAGGCTTAGGAGA+CGG | 0.630309 | 3_1:-75963663 | Msa0375980:three_prime_UTR |
| GAAATTCGATCTCCGATCGT+CGG | 0.633777 | 3_1:-75966832 | Msa0375980:five_prime_UTR |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3_1:-75963868 | Msa0375980:CDS |
| GTTCCGGCGAGTTTCAGCGA+TGG | 0.662380 | 3_1:+75966856 | None:intergenic |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3_1:+75963917 | None:intergenic |
| TCGGCGATGGAGAAAATGAA+CGG | 0.670990 | 3_1:-75966753 | Msa0375980:exon |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3_1:-75965898 | Msa0375980:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3_1:-75966721 | Msa0375980:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3_1:+75963749 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3_1:-75965891 | Msa0375980:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3_1:-75966738 | Msa0375980:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3_1:-75963857 | Msa0375980:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3_1:+75966704 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3_1:-75963867 | Msa0375980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3_1:75963672-75963691 | Msa0375980:three_prime_UTR | 10.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3_1:75963918-75963937 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAAATTTACTTG+TGG | - | chr3_1:75964026-75964045 | Msa0375980:intron | 15.0% |
| !!! | GTTATATGCTTTTTTTTTAA+TGG | - | chr3_1:75965390-75965409 | Msa0375980:intron | 15.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3_1:75966088-75966107 | Msa0375980:intron | 15.0% |
| !! | ACTATGTTAATTGAATTGAA+TGG | - | chr3_1:75964185-75964204 | Msa0375980:intron | 20.0% |
| !! | AGAATATAATTAATCTCTGT+CGG | - | chr3_1:75964669-75964688 | Msa0375980:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3_1:75964776-75964795 | Msa0375980:intron | 20.0% |
| !! | TACACGTAATTTAGTATATT+TGG | - | chr3_1:75964925-75964944 | Msa0375980:intron | 20.0% |
| !! | ACACGTAATTTAGTATATTT+GGG | - | chr3_1:75964926-75964945 | Msa0375980:intron | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3_1:75965042-75965061 | None:intergenic | 20.0% |
| !!! | AAAAAAAGCATATAACTAGA+GGG | + | chr3_1:75965386-75965405 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGCATATAACTAG+AGG | + | chr3_1:75965387-75965406 | None:intergenic | 20.0% |
| !! | AAAGGAAAAATATAAAGTGT+CGG | - | chr3_1:75965519-75965538 | Msa0375980:intron | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3_1:75965884-75965903 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3_1:75966237-75966256 | None:intergenic | 20.0% |
| ! | GAAGTTTGACAAAAAAAGAA+AGG | + | chr3_1:75963330-75963349 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3_1:75963609-75963628 | None:intergenic | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | + | chr3_1:75963651-75963670 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | - | chr3_1:75964251-75964270 | Msa0375980:intron | 25.0% |
| ! | AGAGTAATGAAGGTAAATTA+CGG | + | chr3_1:75964509-75964528 | None:intergenic | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3_1:75964519-75964538 | None:intergenic | 25.0% |
| !!! | TAATTATATTCTGTTTCTGC+CGG | + | chr3_1:75964661-75964680 | None:intergenic | 25.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3_1:75964699-75964718 | Msa0375980:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3_1:75964700-75964719 | Msa0375980:intron | 25.0% |
| ! | TACGTGTATAATAATACAAC+TGG | + | chr3_1:75964913-75964932 | None:intergenic | 25.0% |
| ! | CACGTAATTTAGTATATTTG+GGG | - | chr3_1:75964927-75964946 | Msa0375980:intron | 25.0% |
| !! | GATATTAGTTTATAGGTACA+TGG | - | chr3_1:75965178-75965197 | Msa0375980:intron | 25.0% |
| !!! | CTTTTAAATTTCTGGGAATT+AGG | + | chr3_1:75965306-75965325 | None:intergenic | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3_1:75965457-75965476 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3_1:75965632-75965651 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3_1:75965633-75965652 | Msa0375980:intron | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3_1:75965686-75965705 | Msa0375980:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3_1:75965712-75965731 | None:intergenic | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3_1:75965756-75965775 | None:intergenic | 25.0% |
| ! | TTTGTATTAAACCATTCTTG+TGG | + | chr3_1:75965810-75965829 | None:intergenic | 25.0% |
| ! | TCTTCCCAAAATATTAAATG+CGG | + | chr3_1:75965964-75965983 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3_1:75966078-75966097 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3_1:75966092-75966111 | Msa0375980:intron | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3_1:75966093-75966112 | Msa0375980:intron | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3_1:75966408-75966427 | None:intergenic | 25.0% |
| ! | AATTTCTCTGTTATATATGC+TGG | - | chr3_1:75966648-75966667 | Msa0375980:CDS | 25.0% |
| !!! | AAGAACAGAATATTTTAGAC+AGG | - | chr3_1:75966692-75966711 | Msa0375980:CDS | 25.0% |
| TGATATTACGATGTAGAGTT+TGG | - | chr3_1:75964132-75964151 | Msa0375980:intron | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | - | chr3_1:75964211-75964230 | Msa0375980:intron | 30.0% | |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3_1:75964256-75964275 | Msa0375980:intron | 30.0% |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3_1:75964306-75964325 | None:intergenic | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3_1:75964401-75964420 | Msa0375980:intron | 30.0% |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3_1:75964447-75964466 | Msa0375980:intron | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3_1:75964561-75964580 | None:intergenic | 30.0% | |
| GTAATTTAGTATATTTGGGG+TGG | - | chr3_1:75964930-75964949 | Msa0375980:intron | 30.0% | |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3_1:75964965-75964984 | Msa0375980:intron | 30.0% |
| ! | GAGCTCTGATATTAGTTTAT+AGG | - | chr3_1:75965171-75965190 | Msa0375980:intron | 30.0% |
| TATAGGTACATGGTCAAAAT+AGG | - | chr3_1:75965188-75965207 | Msa0375980:intron | 30.0% | |
| ! | GACTAGGCTTTTAAATTTCT+GGG | + | chr3_1:75965313-75965332 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3_1:75965314-75965333 | None:intergenic | 30.0% |
| CCATTCTTAGCAATATATGA+TGG | + | chr3_1:75965458-75965477 | None:intergenic | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3_1:75965455-75965474 | Msa0375980:intron | 30.0% | |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3_1:75965678-75965697 | None:intergenic | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3_1:75965851-75965870 | Msa0375980:CDS | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3_1:75965922-75965941 | None:intergenic | 30.0% | |
| GGTAAATTTGAAAACATGTC+TGG | - | chr3_1:75965937-75965956 | Msa0375980:CDS | 30.0% | |
| ! | TGGTCCGCATTTAATATTTT+GGG | - | chr3_1:75965957-75965976 | Msa0375980:intron | 30.0% |
| TTATATTCCATAATCAGAGG+TGG | + | chr3_1:75966075-75966094 | None:intergenic | 30.0% | |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3_1:75966234-75966253 | None:intergenic | 30.0% |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3_1:75966304-75966323 | None:intergenic | 30.0% | |
| CACAAAAGATTCAATTACCA+GGG | + | chr3_1:75966333-75966352 | None:intergenic | 30.0% | |
| ACTTGTAGCATTTGCTTATT+TGG | - | chr3_1:75966614-75966633 | Msa0375980:intron | 30.0% | |
| GTCATGTTCTTTCTGTATAT+AGG | - | chr3_1:75966775-75966794 | Msa0375980:five_prime_UTR | 30.0% | |
| AAAATTCCATCATTTAGCTG+AGG | - | chr3_1:75966843-75966862 | Msa0375980:five_prime_UTR | 30.0% | |
| !! | TAACTATTGATTCCGACGAT+CGG | + | chr3_1:75963398-75963417 | None:intergenic | 35.0% |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3_1:75963477-75963496 | Msa0375980:three_prime_UTR | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3_1:75963603-75963622 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3_1:75963874-75963893 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3_1:75964310-75964329 | Msa0375980:intron | 35.0% | |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3_1:75964369-75964388 | Msa0375980:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3_1:75964370-75964389 | Msa0375980:intron | 35.0% |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3_1:75964404-75964423 | Msa0375980:intron | 35.0% |
| GAATATGCTCATTGTCATCA+AGG | + | chr3_1:75964431-75964450 | None:intergenic | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3_1:75964439-75964458 | Msa0375980:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3_1:75964555-75964574 | None:intergenic | 35.0% | |
| ATGAGATTGCATGCAATATG+TGG | + | chr3_1:75964583-75964602 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3_1:75964744-75964763 | Msa0375980:intron | 35.0% | |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3_1:75964934-75964953 | Msa0375980:intron | 35.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3_1:75965009-75965028 | None:intergenic | 35.0% | |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3_1:75965329-75965348 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3_1:75965340-75965359 | None:intergenic | 35.0% |
| TCCGTTACCATATAACTAGT+GGG | + | chr3_1:75965417-75965436 | None:intergenic | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3_1:75965418-75965437 | None:intergenic | 35.0% | |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3_1:75965444-75965463 | None:intergenic | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3_1:75965501-75965520 | Msa0375980:intron | 35.0% |
| TTCAACCAATTGTCAAACCA+AGG | - | chr3_1:75965658-75965677 | Msa0375980:intron | 35.0% | |
| ! | AATGTCCTTGGTTTGACAAT+TGG | + | chr3_1:75965666-75965685 | None:intergenic | 35.0% |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3_1:75965697-75965716 | None:intergenic | 35.0% | |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3_1:75965838-75965857 | None:intergenic | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3_1:75965846-75965865 | None:intergenic | 35.0% |
| ! | CTGGTCCGCATTTAATATTT+TGG | - | chr3_1:75965956-75965975 | Msa0375980:intron | 35.0% |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3_1:75965996-75966015 | Msa0375980:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3_1:75966042-75966061 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3_1:75966065-75966084 | Msa0375980:intron | 35.0% | |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3_1:75966126-75966145 | None:intergenic | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3_1:75966138-75966157 | Msa0375980:intron | 35.0% |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3_1:75966142-75966161 | None:intergenic | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3_1:75966154-75966173 | Msa0375980:intron | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3_1:75966231-75966250 | None:intergenic | 35.0% | |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3_1:75966297-75966316 | None:intergenic | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3_1:75966301-75966320 | None:intergenic | 35.0% |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3_1:75966305-75966324 | None:intergenic | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3_1:75966305-75966324 | Msa0375980:intron | 35.0% | |
| CCACAAAAGATTCAATTACC+AGG | + | chr3_1:75966334-75966353 | None:intergenic | 35.0% | |
| ! | CCTGGTAATTGAATCTTTTG+TGG | - | chr3_1:75966331-75966350 | Msa0375980:intron | 35.0% |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3_1:75966424-75966443 | Msa0375980:intron | 35.0% | |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3_1:75966488-75966507 | Msa0375980:intron | 35.0% |
| !! | TATATGCTGGTTTCTCTCTT+TGG | - | chr3_1:75966661-75966680 | Msa0375980:CDS | 35.0% |
| TCTGAATCCAGTACAGTAAA+AGG | - | chr3_1:75966717-75966736 | Msa0375980:CDS | 35.0% | |
| ! | TTCTTCACCTTTTACTGTAC+TGG | + | chr3_1:75966727-75966746 | None:intergenic | 35.0% |
| AGTACAGTAAAAGGTGAAGA+AGG | - | chr3_1:75966726-75966745 | Msa0375980:CDS | 35.0% | |
| TTCTTTCTGTATATAGGTGC+TGG | - | chr3_1:75966781-75966800 | Msa0375980:five_prime_UTR | 35.0% | |
| AAGTATCCTCAGCTAAATGA+TGG | + | chr3_1:75966852-75966871 | None:intergenic | 35.0% | |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3_1:75963719-75963738 | Msa0375980:exon | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3_1:75963723-75963742 | None:intergenic | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3_1:75963723-75963742 | Msa0375980:CDS | 40.0% |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3_1:75963864-75963883 | Msa0375980:CDS | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3_1:75963941-75963960 | None:intergenic | 40.0% |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3_1:75963993-75964012 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3_1:75964265-75964284 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3_1:75964263-75964282 | Msa0375980:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3_1:75964353-75964372 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3_1:75964399-75964418 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3_1:75964450-75964469 | Msa0375980:intron | 40.0% | |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3_1:75964460-75964479 | Msa0375980:intron | 40.0% |
| GTGTAAGATACACATTGCAC+CGG | - | chr3_1:75964639-75964658 | Msa0375980:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3_1:75964743-75964762 | Msa0375980:intron | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3_1:75964972-75964991 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3_1:75965104-75965123 | None:intergenic | 40.0% | |
| GGTACATGGTCAAAATAGGA+AGG | - | chr3_1:75965192-75965211 | Msa0375980:intron | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3_1:75965407-75965426 | Msa0375980:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3_1:75965416-75965435 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3_1:75965413-75965432 | Msa0375980:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3_1:75965580-75965599 | Msa0375980:intron | 40.0% | |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3_1:75965589-75965608 | Msa0375980:intron | 40.0% |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3_1:75965593-75965612 | None:intergenic | 40.0% | |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3_1:75965788-75965807 | None:intergenic | 40.0% |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3_1:75965796-75965815 | None:intergenic | 40.0% | |
| AAGTGCTTAAGCCACAAGAA+TGG | - | chr3_1:75965796-75965815 | Msa0375980:CDS | 40.0% | |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3_1:75965868-75965887 | Msa0375980:CDS | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3_1:75965916-75965935 | Msa0375980:CDS | 40.0% |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3_1:75966228-75966247 | None:intergenic | 40.0% | |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3_1:75966298-75966317 | None:intergenic | 40.0% |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3_1:75966296-75966315 | Msa0375980:intron | 40.0% | |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3_1:75966346-75966365 | Msa0375980:intron | 40.0% |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3_1:75966347-75966366 | Msa0375980:intron | 40.0% | |
| !! | ATATAGGTGCTGGTGAAAGT+TGG | - | chr3_1:75966791-75966810 | Msa0375980:five_prime_UTR | 40.0% |
| GAAATTCGATCTCCGATCGT+CGG | - | chr3_1:75963383-75963402 | Msa0375980:three_prime_UTR | 45.0% | |
| !! | TCGTTCTAAGATTCGATCGC+CGG | - | chr3_1:75963423-75963442 | Msa0375980:three_prime_UTR | 45.0% |
| TCGGCGATGGAGAAAATGAA+CGG | - | chr3_1:75963462-75963481 | Msa0375980:three_prime_UTR | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3_1:75963494-75963513 | Msa0375980:three_prime_UTR | 45.0% |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3_1:75963500-75963519 | Msa0375980:three_prime_UTR | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3_1:75963534-75963553 | Msa0375980:three_prime_UTR | 45.0% | |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3_1:75963555-75963574 | None:intergenic | 45.0% |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3_1:75963944-75963963 | Msa0375980:intron | 45.0% | |
| TGGAAGACACCAACATGTGT+CGG | + | chr3_1:75963973-75963992 | None:intergenic | 45.0% | |
| ATGAAGCACGACACATACAC+TGG | + | chr3_1:75964072-75964091 | None:intergenic | 45.0% | |
| TACGATGTAGAGTTTGGCTG+TGG | - | chr3_1:75964138-75964157 | Msa0375980:intron | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3_1:75964268-75964287 | Msa0375980:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3_1:75964340-75964359 | Msa0375980:intron | 45.0% | |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3_1:75964466-75964485 | Msa0375980:intron | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3_1:75964467-75964486 | Msa0375980:intron | 45.0% |
| !! | CAGTATCGACATCCCAGATA+TGG | + | chr3_1:75964715-75964734 | None:intergenic | 45.0% |
| ! | TCTGGGATGTCGATACTGTT+AGG | - | chr3_1:75964717-75964736 | Msa0375980:intron | 45.0% |
| GGATGTCGATACTGTTAGGA+AGG | - | chr3_1:75964721-75964740 | Msa0375980:intron | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3_1:75964995-75965014 | None:intergenic | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3_1:75964995-75965014 | Msa0375980:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3_1:75965064-75965083 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3_1:75965157-75965176 | None:intergenic | 45.0% | |
| !! | TAAAGTGTCGGTTCTTCTGC+TGG | - | chr3_1:75965531-75965550 | Msa0375980:intron | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3_1:75965789-75965808 | None:intergenic | 45.0% |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3_1:75965900-75965919 | Msa0375980:CDS | 45.0% | |
| GATTCAATTACCAGGGTTCC+TGG | + | chr3_1:75966326-75966345 | None:intergenic | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3_1:75966348-75966367 | Msa0375980:intron | 45.0% | |
| TAAGGCTTCAACGAAGTAGC+AGG | + | chr3_1:75966390-75966409 | None:intergenic | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3_1:75966428-75966447 | Msa0375980:intron | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3_1:75966429-75966448 | Msa0375980:intron | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3_1:75966465-75966484 | Msa0375980:intron | 45.0% | |
| AACTCATGCATCCGATCAAG+TGG | + | chr3_1:75966479-75966498 | None:intergenic | 45.0% | |
| ! | GAGAGAAGAGTTGTTGGTGG+TGG | - | chr3_1:75963286-75963305 | Msa0375980:three_prime_UTR | 50.0% |
| !! | GAGTTGTTGGTGGTGGATGA+CGG | - | chr3_1:75963293-75963312 | Msa0375980:three_prime_UTR | 50.0% |
| CGGAGATCGAATTTCCGTTC+CGG | + | chr3_1:75963378-75963397 | None:intergenic | 50.0% | |
| !! | TTCTAAGATTCGATCGCCGG+TGG | - | chr3_1:75963426-75963445 | Msa0375980:three_prime_UTR | 50.0% |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3_1:75963514-75963533 | None:intergenic | 50.0% | |
| GTCTGGTATCCGACACATGT+TGG | - | chr3_1:75963961-75963980 | Msa0375980:intron | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3_1:75964271-75964290 | Msa0375980:intron | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3_1:75964339-75964358 | Msa0375980:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3_1:75964974-75964993 | Msa0375980:intron | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3_1:75965354-75965373 | Msa0375980:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3_1:75965358-75965377 | None:intergenic | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3_1:75965901-75965920 | Msa0375980:CDS | 50.0% | |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3_1:75965909-75965928 | None:intergenic | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3_1:75966225-75966244 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3_1:75966358-75966377 | Msa0375980:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3_1:75966365-75966384 | None:intergenic | 50.0% | |
| GAAGTAGCAGGTCTCATCCT+TGG | + | chr3_1:75966378-75966397 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3_1:75966469-75966488 | None:intergenic | 50.0% | |
| TGGCTGAGAACTTTCTGCCA+CGG | - | chr3_1:75966508-75966527 | Msa0375980:intron | 50.0% | |
| TTCTGCCACGGATGAAGCTT+CGG | - | chr3_1:75966520-75966539 | Msa0375980:intron | 50.0% | |
| CTTTCCGATCATGGAGGCTT+AGG | - | chr3_1:75966546-75966565 | Msa0375980:intron | 50.0% | |
| GTCTCCTAAGCCTCCATGAT+CGG | + | chr3_1:75966553-75966572 | None:intergenic | 50.0% | |
| GATCATGGAGGCTTAGGAGA+CGG | - | chr3_1:75966552-75966571 | Msa0375980:intron | 50.0% | |
| CTTCCATCGCTGAAACTCGC+CGG | - | chr3_1:75963356-75963375 | Msa0375980:three_prime_UTR | 55.0% | |
| ATCGCTGAAACTCGCCGGAA+CGG | - | chr3_1:75963361-75963380 | Msa0375980:three_prime_UTR | 55.0% | |
| CGATAAACGCGAAACGCCAC+CGG | + | chr3_1:75963445-75963464 | None:intergenic | 55.0% | |
| CGGTGGCGTTTCGCGTTTAT+CGG | - | chr3_1:75963443-75963462 | Msa0375980:three_prime_UTR | 55.0% | |
| CGTTTCGCGTTTATCGGCGA+TGG | - | chr3_1:75963449-75963468 | Msa0375980:three_prime_UTR | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3_1:75964317-75964336 | Msa0375980:intron | 55.0% | |
| ACCACACACCTGCTCACGAA+TGG | + | chr3_1:75964321-75964340 | None:intergenic | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3_1:75965908-75965927 | None:intergenic | 55.0% | |
| TGATGGAAGACCAGGAACCC+TGG | - | chr3_1:75966313-75966332 | Msa0375980:intron | 55.0% | |
| TCTGCCACGGATGAAGCTTC+GGG | - | chr3_1:75966521-75966540 | Msa0375980:intron | 55.0% | |
| !! | TTAGGAGACGGACTGGCAAG+TGG | - | chr3_1:75966564-75966583 | Msa0375980:intron | 55.0% |
| CGGCGAGTTTCAGCGATGGA+AGG | + | chr3_1:75963358-75963377 | None:intergenic | 60.0% | |
| GTTCCGGCGAGTTTCAGCGA+TGG | + | chr3_1:75963362-75963381 | None:intergenic | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3_1:75964322-75964341 | Msa0375980:intron | 60.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3_1:75964323-75964342 | Msa0375980:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3_1:75964324-75964343 | Msa0375980:intron | 60.0% | |
| CTGCCACGGATGAAGCTTCG+GGG | - | chr3_1:75966522-75966541 | Msa0375980:intron | 60.0% | |
| TGCCACGGATGAAGCTTCGG+GGG | - | chr3_1:75966523-75966542 | Msa0375980:intron | 60.0% | |
| CTTCGGGGGCTTTCCGATCA+TGG | - | chr3_1:75966537-75966556 | Msa0375980:intron | 60.0% | |
| TGGAGGCTTAGGAGACGGAC+TGG | - | chr3_1:75966557-75966576 | Msa0375980:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3_1:75966442-75966461 | Msa0375980:intron | 65.0% |
| AGCCCCCGAAGCTTCATCCG+TGG | + | chr3_1:75966528-75966547 | None:intergenic | 65.0% | |
| CGGGGGCTTTCCGATCATGG+AGG | - | chr3_1:75966540-75966559 | Msa0375980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75963284 | 75966953 | 75963284 | ID=Msa0375980;Name=Msa0375980 |
| chr3_1 | mRNA | 75963284 | 75966953 | 75963284 | ID=Msa0375980-mRNA-1;Parent=Msa0375980;Name=Msa0375980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=184|1|1|1|1|1|3|439|199 |
| chr3_1 | exon | 75963284 | 75963962 | 75963284 | ID=Msa0375980-mRNA-1:exon:17883;Parent=Msa0375980-mRNA-1 |
| chr3_1 | exon | 75965749 | 75965964 | 75965749 | ID=Msa0375980-mRNA-1:exon:17882;Parent=Msa0375980-mRNA-1 |
| chr3_1 | exon | 75966626 | 75966953 | 75966626 | ID=Msa0375980-mRNA-1:exon:17881;Parent=Msa0375980-mRNA-1 |
| chr3_1 | five_prime_UTR | 75966770 | 75966953 | 75966770 | ID=Msa0375980-mRNA-1:five_prime_utr;Parent=Msa0375980-mRNA-1 |
| chr3_1 | CDS | 75966626 | 75966769 | 75966626 | ID=Msa0375980-mRNA-1:cds;Parent=Msa0375980-mRNA-1 |
| chr3_1 | CDS | 75965749 | 75965964 | 75965749 | ID=Msa0375980-mRNA-1:cds;Parent=Msa0375980-mRNA-1 |
| chr3_1 | CDS | 75963723 | 75963962 | 75963723 | ID=Msa0375980-mRNA-1:cds;Parent=Msa0375980-mRNA-1 |
| chr3_1 | three_prime_UTR | 75963284 | 75963722 | 75963284 | ID=Msa0375980-mRNA-1:three_prime_utr;Parent=Msa0375980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
