Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0377350 | XP_003602486.1 | 99.185 | 368 | 2 | 1 | 1 | 367 | 1 | 368 | 0.0 | 744 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0377350 | sp|Q9SVA6|DRG3_ARATH | 90.515 | 369 | 33 | 2 | 1 | 367 | 1 | 369 | 0.0 | 676 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0377350 | G7JAA5 | 99.185 | 368 | 2 | 1 | 1 | 367 | 1 | 368 | 0.0 | 744 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0124960 | Msa0377350 | 0.802188 | 6.314763e-49 | -8.615850e-47 |
Msa0154730 | Msa0377350 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0377350 | MtrunA17_Chr3g0129261 | 99.185 | 368 | 2 | 1 | 1 | 367 | 1 | 368 | 0.0 | 744 |
Msa0377350 | MtrunA17_Chr8g0343701 | 65.169 | 178 | 61 | 1 | 4 | 181 | 3 | 179 | 3.67e-71 | 220 |
Msa0377350 | MtrunA17_Chr8g0343721 | 49.419 | 172 | 84 | 2 | 198 | 366 | 4 | 175 | 8.79e-54 | 176 |
Msa0377350 | MtrunA17_Chr2g0286181 | 35.652 | 115 | 71 | 2 | 65 | 176 | 319 | 433 | 7.17e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0377350 | AT4G39520.1 | 90.515 | 369 | 33 | 2 | 1 | 367 | 1 | 369 | 0.0 | 676 |
Msa0377350 | AT1G17470.1 | 56.284 | 366 | 156 | 3 | 4 | 366 | 3 | 367 | 4.12e-149 | 427 |
Msa0377350 | AT1G17470.2 | 56.284 | 366 | 156 | 3 | 4 | 366 | 3 | 367 | 4.12e-149 | 427 |
Msa0377350 | AT1G72660.2 | 55.464 | 366 | 159 | 3 | 4 | 366 | 3 | 367 | 4.92e-147 | 422 |
Msa0377350 | AT1G72660.3 | 55.464 | 366 | 159 | 3 | 4 | 366 | 3 | 367 | 4.92e-147 | 422 |
Msa0377350 | AT1G72660.1 | 55.464 | 366 | 159 | 3 | 4 | 366 | 3 | 367 | 4.92e-147 | 422 |
Msa0377350 | AT1G72660.4 | 52.797 | 286 | 132 | 2 | 84 | 366 | 2 | 287 | 1.96e-108 | 320 |
Msa0377350 | AT5G18570.1 | 27.513 | 189 | 114 | 4 | 65 | 230 | 379 | 567 | 2.41e-13 | 71.6 |
Find 144 sgRNAs with CRISPR-Local
Find 508 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAATGCAGATATTACTTTA+AGG | 0.195713 | 3_1:-77776675 | Msa0377350:CDS |
CATGTCTCTAACAGAGTAAT+TGG | 0.209705 | 3_1:-77774863 | Msa0377350:three_prime_UTR |
ATAAGACGCTTATGAGTTAT+TGG | 0.217930 | 3_1:+77778164 | None:intergenic |
AAGACTTTCCCCAGGGTTAT+TGG | 0.227823 | 3_1:-77775026 | Msa0377350:three_prime_UTR |
TCCTCTTCCCTTTCCATCCT+TGG | 0.232626 | 3_1:+77778978 | None:intergenic |
CTGAATAAGAAACAAGTAAT+TGG | 0.255290 | 3_1:+77774995 | None:intergenic |
AGCCACCAAACCTGACTTTC+AGG | 0.267365 | 3_1:-77776795 | Msa0377350:CDS |
TTCTTAGATGACAATATTAC+AGG | 0.277031 | 3_1:+77775984 | None:intergenic |
AATGATGCAGTGCTCTGGTC+TGG | 0.288648 | 3_1:-77775361 | Msa0377350:intron |
ATGGGCTTCTGGATAAAGTT+TGG | 0.291273 | 3_1:-77776070 | Msa0377350:CDS |
GTGGAACCTTGATGGGCTTC+TGG | 0.293542 | 3_1:-77776081 | Msa0377350:CDS |
AAGGCTACTGCTCATCATTT+GGG | 0.300257 | 3_1:-77781859 | Msa0377350:CDS |
GTTCGTTCTAGTTGGATATT+CGG | 0.303262 | 3_1:-77774785 | Msa0377350:three_prime_UTR |
CAAGGCTACTGCTCATCATT+TGG | 0.308308 | 3_1:-77781860 | Msa0377350:CDS |
AAATAGATTAGGTTTACTTC+TGG | 0.311514 | 3_1:+77782386 | None:intergenic |
TTCGTTCTAGTTGGATATTC+GGG | 0.320406 | 3_1:-77774784 | Msa0377350:three_prime_UTR |
TAGTCAGGATTCATACCTTT+AGG | 0.323820 | 3_1:+77776014 | None:intergenic |
ACTACACTAACTTGCATTCC+AGG | 0.339401 | 3_1:-77779979 | Msa0377350:CDS |
AACATTTCACCACCGCTCTT+AGG | 0.349084 | 3_1:-77782439 | Msa0377350:five_prime_UTR |
GTGAAATATACAAAATTTGA+TGG | 0.349683 | 3_1:-77774961 | Msa0377350:three_prime_UTR |
TTGTAAAGATTACAATTTGC+TGG | 0.351463 | 3_1:-77774830 | Msa0377350:three_prime_UTR |
TGCTTAACCGTCTTAATCTC+TGG | 0.371104 | 3_1:-77774693 | Msa0377350:three_prime_UTR |
TTCCTCCTGAAAGTCAGGTT+TGG | 0.374686 | 3_1:+77776790 | None:intergenic |
TTTCTTTCCTCCTGAAAGTC+AGG | 0.381939 | 3_1:+77776785 | None:intergenic |
CTCCTGAAAGTCAGGTTTGG+TGG | 0.386899 | 3_1:+77776793 | None:intergenic |
ATGATGCAGTGCTCTGGTCT+GGG | 0.389872 | 3_1:-77775360 | Msa0377350:intron |
TGGAAAGGGAAGAGGAAGGC+AGG | 0.392906 | 3_1:-77778971 | Msa0377350:intron |
AATGAAATTACGCATCAGTT+TGG | 0.395899 | 3_1:-77774739 | Msa0377350:three_prime_UTR |
ATTACAGGGTCTTCGTAGTC+AGG | 0.396058 | 3_1:+77775999 | None:intergenic |
TGGGCTTCTGGATAAAGTTT+GGG | 0.396911 | 3_1:-77776069 | Msa0377350:CDS |
TACTTGTTTCTTATTCAGAT+AGG | 0.399264 | 3_1:-77774990 | Msa0377350:three_prime_UTR |
TCAGATCACACTTGAGGAAC+TGG | 0.403962 | 3_1:-77776566 | Msa0377350:CDS |
TTGGCACCCTCAATAATTCC+AGG | 0.407131 | 3_1:+77778997 | None:intergenic |
ATGTCTCTAACAGAGTAATT+GGG | 0.408223 | 3_1:-77774862 | Msa0377350:three_prime_UTR |
GGAGAGAAGCGAAGTAAGAT+TGG | 0.409396 | 3_1:+77782407 | None:intergenic |
TCACGGTATCAAGATCTAGA+TGG | 0.410734 | 3_1:+77776725 | None:intergenic |
ACTCCTTACACCTACAACTA+AGG | 0.413818 | 3_1:-77781192 | Msa0377350:CDS |
CCGCCACCTCCCTTAGTTGT+AGG | 0.416550 | 3_1:+77781182 | None:intergenic |
CACCTGGAGTGGAACCTTGA+TGG | 0.417281 | 3_1:-77776089 | Msa0377350:CDS |
GAAGGAAAGGAAAATAGATT+AGG | 0.417558 | 3_1:+77782375 | None:intergenic |
ACTTGAGGAACTGGAGATCT+TGG | 0.417927 | 3_1:-77776557 | Msa0377350:CDS |
ACCTGGAGTGGAACCTTGAT+GGG | 0.417928 | 3_1:-77776088 | Msa0377350:CDS |
TGCCCTCAATGACATCTATA+AGG | 0.420928 | 3_1:+77776632 | None:intergenic |
CTAGAACAAATATGCAGAAA+TGG | 0.426139 | 3_1:+77782519 | None:intergenic |
AGCTAGAAGGATTTGGCATA+AGG | 0.430372 | 3_1:-77778133 | Msa0377350:intron |
TTCTTATTCAGATAGGGATT+AGG | 0.432512 | 3_1:-77774983 | Msa0377350:three_prime_UTR |
CTCGCTACATATAGCCTTCA+CGG | 0.438245 | 3_1:+77776708 | None:intergenic |
TTCCTCATTACTGCCCTGTC+AGG | 0.441209 | 3_1:-77776528 | Msa0377350:intron |
CTCCCTTAGTTGTAGGTGTA+AGG | 0.443291 | 3_1:+77781189 | None:intergenic |
TTCCAAATGATGCAGTGCTC+TGG | 0.443660 | 3_1:-77775366 | Msa0377350:intron |
CTGTGATTGTTCGTTCTAGT+TGG | 0.444785 | 3_1:-77774793 | Msa0377350:three_prime_UTR |
AGAGCGGTGGTGAAATGTTA+CGG | 0.454944 | 3_1:+77782443 | None:intergenic |
GCCCATCAAGGTTCCACTCC+AGG | 0.455391 | 3_1:+77776087 | None:intergenic |
GACTTTCAGGAGGAAAGAAA+AGG | 0.462402 | 3_1:-77776782 | Msa0377350:CDS |
GAGCGGTGGTGAAATGTTAC+GGG | 0.465043 | 3_1:+77782444 | None:intergenic |
ACTAAGGGAGGTGGCGGTGC+TGG | 0.471973 | 3_1:-77781176 | Msa0377350:CDS |
GATCTCCCTGGAATTATTGA+GGG | 0.477457 | 3_1:-77779003 | Msa0377350:CDS |
CAGCACCACTCAACAACAAA+TGG | 0.479475 | 3_1:+77774929 | None:intergenic |
TGTCAGTTGCTGGATCTCCC+TGG | 0.485451 | 3_1:-77779015 | Msa0377350:intron |
CTTGTTCACAACATAGATGC+AGG | 0.490496 | 3_1:+77776594 | None:intergenic |
AGCTTCTCGTTCTTCAACAA+TGG | 0.492679 | 3_1:-77782350 | Msa0377350:exon |
ACTTGTTTCTTATTCAGATA+GGG | 0.493076 | 3_1:-77774989 | Msa0377350:three_prime_UTR |
CGTATTTATACTAAACCTAA+AGG | 0.494629 | 3_1:-77776029 | Msa0377350:CDS |
GGAGGTGGCGGTGCTGGTGA+AGG | 0.497652 | 3_1:-77781170 | Msa0377350:CDS |
GGATCTCCCTGGAATTATTG+AGG | 0.497825 | 3_1:-77779004 | Msa0377350:CDS |
ACTCTGCTGAATAAATTGAC+TGG | 0.498625 | 3_1:-77781080 | Msa0377350:CDS |
CTCGTGGGCTTCCCGTCAGT+TGG | 0.504184 | 3_1:-77781110 | Msa0377350:CDS |
CTCTTAGTAAGACTTTCCCC+AGG | 0.506029 | 3_1:-77775034 | Msa0377350:three_prime_UTR |
AACGAGAAGCTCGGAAGGAA+AGG | 0.506257 | 3_1:+77782362 | None:intergenic |
CTCTGCTGAATAAATTGACT+GGG | 0.511261 | 3_1:-77781079 | Msa0377350:CDS |
AGTTAGTGTAGTGAACTCAT+AGG | 0.513041 | 3_1:+77779990 | None:intergenic |
TTGGAAATGATGCGTCTTGT+GGG | 0.515428 | 3_1:-77774892 | Msa0377350:three_prime_UTR |
CATCCTCTAGTATCTCATGC+AGG | 0.523981 | 3_1:+77775076 | None:intergenic |
ATTATTGAGGGTGCCAAGGA+TGG | 0.524161 | 3_1:-77778991 | Msa0377350:CDS |
GCCAAGGATGGAAAGGGAAG+AGG | 0.527508 | 3_1:-77778979 | Msa0377350:CDS |
CCACGATATGTGATCACACC+TGG | 0.532149 | 3_1:+77779961 | None:intergenic |
CTTTATCCAGAAGCCCATCA+AGG | 0.533921 | 3_1:+77776075 | None:intergenic |
TCTGTTATTCAGTGCACACC+TGG | 0.544525 | 3_1:-77776105 | Msa0377350:intron |
TGGAATTATTGAGGGTGCCA+AGG | 0.547326 | 3_1:-77778995 | Msa0377350:CDS |
TGAGGGTGCCAAGGATGGAA+AGG | 0.549980 | 3_1:-77778986 | Msa0377350:CDS |
CACGGTATCAAGATCTAGAT+GGG | 0.550347 | 3_1:+77776726 | None:intergenic |
GATGCAAGAGTCGGTCTCGT+GGG | 0.558118 | 3_1:-77781125 | Msa0377350:CDS |
CTCCTTACACCTACAACTAA+GGG | 0.561218 | 3_1:-77781191 | Msa0377350:CDS |
GGATGCAAGAGTCGGTCTCG+TGG | 0.561453 | 3_1:-77781126 | Msa0377350:CDS |
GAGCGTGATCCAATAACCCT+GGG | 0.562797 | 3_1:+77775017 | None:intergenic |
GAGGGTGCCAAGGATGGAAA+GGG | 0.568429 | 3_1:-77778985 | Msa0377350:CDS |
GAGTAGACTTGCCAACTGAC+GGG | 0.569689 | 3_1:+77781099 | None:intergenic |
GACCTTATAGATGTCATTGA+GGG | 0.569803 | 3_1:-77776634 | Msa0377350:CDS |
TCATCATTTGGGGTTACTGA+AGG | 0.570485 | 3_1:-77781848 | Msa0377350:intron |
AGAGTAGACTTGCCAACTGA+CGG | 0.570529 | 3_1:+77781098 | None:intergenic |
TTTGGAAATGATGCGTCTTG+TGG | 0.570637 | 3_1:-77774893 | Msa0377350:three_prime_UTR |
TGAAATATACAAAATTTGAT+GGG | 0.571498 | 3_1:-77774960 | Msa0377350:three_prime_UTR |
TGATGCAGTGCTCTGGTCTG+GGG | 0.575620 | 3_1:-77775359 | Msa0377350:intron |
ATATTCGGGTATGCATATGC+TGG | 0.577435 | 3_1:-77774770 | Msa0377350:three_prime_UTR |
TGAAGAACGAGAAGCTCGGA+AGG | 0.582779 | 3_1:+77782357 | None:intergenic |
GGAGCGTGATCCAATAACCC+TGG | 0.583757 | 3_1:+77775016 | None:intergenic |
CTAAACTTGCAAAACTGAGG+AGG | 0.585745 | 3_1:-77781217 | Msa0377350:CDS |
GGTTACAAGAATTACCTGAC+AGG | 0.586053 | 3_1:+77776514 | None:intergenic |
TTAAACCATTTGTTGTTGAG+TGG | 0.588013 | 3_1:-77774934 | Msa0377350:three_prime_UTR |
ATCCTCTAGTATCTCATGCA+GGG | 0.588051 | 3_1:+77775077 | None:intergenic |
TACCTGACAGGGCAGTAATG+AGG | 0.589669 | 3_1:+77776526 | None:intergenic |
ACTTTCAGGAGGAAAGAAAA+GGG | 0.590692 | 3_1:-77776781 | Msa0377350:CDS |
TCAGGAGGAAAGAAAAGGGT+GGG | 0.592993 | 3_1:-77776777 | Msa0377350:CDS |
TGACCTTATAGATGTCATTG+AGG | 0.593679 | 3_1:-77776635 | Msa0377350:CDS |
AATCAAAGACATCGAAGATG+AGG | 0.596340 | 3_1:-77782311 | Msa0377350:intron |
ATCTATAAGGTCATCTGCAG+TGG | 0.597376 | 3_1:+77776645 | None:intergenic |
TATTCAGTGCACACCTGGAG+TGG | 0.599235 | 3_1:-77776100 | Msa0377350:intron |
AGTATCTCATGCAGGGAATG+TGG | 0.603443 | 3_1:+77775084 | None:intergenic |
TTTCTGCGATCGCATTCACA+AGG | 0.607440 | 3_1:-77775946 | Msa0377350:CDS |
TAAACTTGCAAAACTGAGGA+GGG | 0.608244 | 3_1:-77781216 | Msa0377350:CDS |
AGGCTACTGCTCATCATTTG+GGG | 0.608492 | 3_1:-77781858 | Msa0377350:CDS |
TCGTTCTTCAACAATGGCGA+CGG | 0.609637 | 3_1:-77782344 | Msa0377350:exon |
TGTCTCTAACAGAGTAATTG+GGG | 0.610546 | 3_1:-77774861 | Msa0377350:three_prime_UTR |
TCTTAGTAAGACTTTCCCCA+GGG | 0.611564 | 3_1:-77775033 | Msa0377350:three_prime_UTR |
GAAAACGAGAACGAGGACGA+AGG | 0.614494 | 3_1:+77782494 | None:intergenic |
TCTTAGATGACAATATTACA+GGG | 0.622650 | 3_1:+77775985 | None:intergenic |
ACACCTACAACTAAGGGAGG+TGG | 0.623374 | 3_1:-77781185 | Msa0377350:CDS |
CAAGCCTCAGAGAGTCGGCA+AGG | 0.623563 | 3_1:-77775321 | Msa0377350:intron |
AAACACAAGCCTCAGAGAGT+CGG | 0.626180 | 3_1:-77775326 | Msa0377350:CDS |
AATGTTACGGGTTCAGAGCG+TGG | 0.629311 | 3_1:+77782456 | None:intergenic |
TCTCATGCAGGGAATGTGGT+CGG | 0.637938 | 3_1:+77775088 | None:intergenic |
GATTGATCAGATCACACTTG+AGG | 0.641269 | 3_1:-77776572 | Msa0377350:CDS |
CCAGGTGTGATCACATATCG+TGG | 0.641756 | 3_1:-77779961 | Msa0377350:CDS |
TGGCACCCTCAATAATTCCA+GGG | 0.644735 | 3_1:+77778998 | None:intergenic |
AAAAGTGGGGATGCAAGAGT+CGG | 0.647820 | 3_1:-77781134 | Msa0377350:CDS |
CACAGGTTATTAGTACTGCA+AGG | 0.648199 | 3_1:-77778226 | Msa0377350:intron |
TTGTTGAAGAACGAGAAGCT+CGG | 0.650052 | 3_1:+77782353 | None:intergenic |
TCTAGATCTTGATACCGTGA+AGG | 0.652544 | 3_1:-77776722 | Msa0377350:CDS |
TTCAGGAGGAAAGAAAAGGG+TGG | 0.654637 | 3_1:-77776778 | Msa0377350:CDS |
TCTACCTTGCCGACTCTCTG+AGG | 0.654923 | 3_1:+77775317 | None:intergenic |
CCTACAACTAAGGGAGGTGG+CGG | 0.656986 | 3_1:-77781182 | Msa0377350:CDS |
AGGCTAAACTTGCAAAACTG+AGG | 0.657417 | 3_1:-77781220 | Msa0377350:CDS |
TTGTTCACAACATAGATGCA+GGG | 0.658113 | 3_1:+77776595 | None:intergenic |
TTCCCTGCATGAGATACTAG+AGG | 0.664860 | 3_1:-77775079 | Msa0377350:three_prime_UTR |
GGCGAAAACTCAAAAGAACA+AGG | 0.674392 | 3_1:-77781878 | Msa0377350:CDS |
CACCAAACCTGACTTTCAGG+AGG | 0.677415 | 3_1:-77776792 | Msa0377350:CDS |
AGTTTGAAACCTAAGAGCGG+TGG | 0.678667 | 3_1:+77782430 | None:intergenic |
TTATGATCCAGAGATTAAGA+CGG | 0.681609 | 3_1:+77774686 | None:intergenic |
TGTAGAAGAAAACGAGAACG+AGG | 0.692233 | 3_1:+77782487 | None:intergenic |
AGGATGGAAAGGGAAGAGGA+AGG | 0.692562 | 3_1:-77778975 | Msa0377350:CDS |
GTTACAAGAATTACCTGACA+GGG | 0.705478 | 3_1:+77776515 | None:intergenic |
CTTACACCTACAACTAAGGG+AGG | 0.707070 | 3_1:-77781188 | Msa0377350:CDS |
TGGAGTTTGAAACCTAAGAG+CGG | 0.715356 | 3_1:+77782427 | None:intergenic |
AGCGTGATCCAATAACCCTG+GGG | 0.773624 | 3_1:+77775018 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTTATTTTATTTTTT+TGG | - | chr3_1:77780359-77780378 | Msa0377350:intron | 0.0% |
!!! | GTATATTTTAATAAAATTGA+TGG | - | chr3_1:77775059-77775078 | Msa0377350:three_prime_UTR | 10.0% |
!!! | ATTTAAGTTATATTCAAATT+TGG | - | chr3_1:77778146-77778165 | Msa0377350:CDS | 10.0% |
!!! | TTTAAGTTATATTCAAATTT+GGG | - | chr3_1:77778147-77778166 | Msa0377350:CDS | 10.0% |
!! | AAAGAATACATTAATTTAAA+AGG | + | chr3_1:77780980-77780999 | None:intergenic | 10.0% |
!!! | TATATTGGTTTTTTTAATAT+TGG | + | chr3_1:77781722-77781741 | None:intergenic | 10.0% |
!!! | GATATTTTTATTTTTTTGAA+TGG | + | chr3_1:77781766-77781785 | None:intergenic | 10.0% |
!!! | TATTATTTTGTGTATAATTG+CGG | - | chr3_1:77775287-77775306 | Msa0377350:intron | 15.0% |
!!! | ATGTTAGTTTGATTATTAAA+TGG | - | chr3_1:77775386-77775405 | Msa0377350:intron | 15.0% |
!! | ATTAATGTGATTGTATATAT+TGG | - | chr3_1:77775563-77775582 | Msa0377350:intron | 15.0% |
!! | ATTCTAATATACAATATTGA+AGG | - | chr3_1:77775892-77775911 | Msa0377350:intron | 15.0% |
!! | AAAATCTTAATTATATCTTC+AGG | + | chr3_1:77776701-77776720 | None:intergenic | 15.0% |
!!! | AATATATTTGAAACCTATTT+GGG | - | chr3_1:77777625-77777644 | Msa0377350:intron | 15.0% |
!! | AATATAATTTATGCATTGAA+CGG | - | chr3_1:77777949-77777968 | Msa0377350:intron | 15.0% |
!! | TATTATGTTTAGAGAAAATA+TGG | - | chr3_1:77778727-77778746 | Msa0377350:intron | 15.0% |
!! | ATTATGTTTAGAGAAAATAT+GGG | - | chr3_1:77778728-77778747 | Msa0377350:intron | 15.0% |
!! | TGAAATATACAAAATTTGAT+GGG | - | chr3_1:77782246-77782265 | Msa0377350:intron | 15.0% |
!! | TTCTATTATGATTGAATCAT+AGG | - | chr3_1:77774959-77774978 | Msa0377350:three_prime_UTR | 20.0% |
!! | TCTATTATGATTGAATCATA+GGG | - | chr3_1:77774960-77774979 | Msa0377350:three_prime_UTR | 20.0% |
!!! | ATTGTATATATTGGTTAGAT+TGG | - | chr3_1:77775572-77775591 | Msa0377350:intron | 20.0% |
!! | ATACCTAAACTTTAAACATA+GGG | + | chr3_1:77775751-77775770 | None:intergenic | 20.0% |
!! | TATACCTAAACTTTAAACAT+AGG | + | chr3_1:77775752-77775771 | None:intergenic | 20.0% |
!! | TAAAGAATATAAGATTCCAT+AGG | + | chr3_1:77775807-77775826 | None:intergenic | 20.0% |
!!! | TTGTTTGTTTGTTTTACTTT+TGG | - | chr3_1:77776231-77776250 | Msa0377350:intron | 20.0% |
!! | TCAAATTAATACAATTCTAC+TGG | + | chr3_1:77776509-77776528 | None:intergenic | 20.0% |
!! | ATTTGATGTAAATGATATGT+CGG | - | chr3_1:77776523-77776542 | Msa0377350:intron | 20.0% |
!! | GAAATAAATCTCAATATGTA+AGG | - | chr3_1:77776625-77776644 | Msa0377350:CDS | 20.0% |
!! | ACAAATAAGTAAAATGATAG+TGG | + | chr3_1:77776822-77776841 | None:intergenic | 20.0% |
!!! | TTTTTTCCTTCTTTTTGAAA+TGG | - | chr3_1:77777025-77777044 | Msa0377350:intron | 20.0% |
!!! | TTTTTCCTTCTTTTTGAAAT+GGG | - | chr3_1:77777026-77777045 | Msa0377350:intron | 20.0% |
!!! | TCTGAAAAGTTTACTTATTT+TGG | - | chr3_1:77777179-77777198 | Msa0377350:intron | 20.0% |
!!! | TTATTTTTGTTTTTGGTTTG+AGG | - | chr3_1:77777330-77777349 | Msa0377350:intron | 20.0% |
!!! | GAATATATTTGAAACCTATT+TGG | - | chr3_1:77777624-77777643 | Msa0377350:intron | 20.0% |
!! | ACAACAATTATAGTAATAAG+TGG | + | chr3_1:77779657-77779676 | None:intergenic | 20.0% |
!!! | TGGTTGATATAGAAATAAAA+CGG | + | chr3_1:77779986-77780005 | None:intergenic | 20.0% |
!! | ATAATGCAGATATTACTTTA+AGG | - | chr3_1:77780531-77780550 | Msa0377350:intron | 20.0% |
!! | TTTATACATCCTTATGTAAA+AGG | - | chr3_1:77780771-77780790 | Msa0377350:intron | 20.0% |
!! | TTATACATCCTTATGTAAAA+GGG | - | chr3_1:77780772-77780791 | Msa0377350:intron | 20.0% |
!!! | TTTTGTTTATCTTAGTTTTG+AGG | - | chr3_1:77780807-77780826 | Msa0377350:intron | 20.0% |
!!! | TTTGTTTATCTTAGTTTTGA+GGG | - | chr3_1:77780808-77780827 | Msa0377350:intron | 20.0% |
!!! | TTGTTGAGAGAATTTTTTTT+GGG | - | chr3_1:77781050-77781069 | Msa0377350:intron | 20.0% |
!!! | ATCATAAGATATTTAGTTCT+GGG | + | chr3_1:77781321-77781340 | None:intergenic | 20.0% |
!!! | AATCATAAGATATTTAGTTC+TGG | + | chr3_1:77781322-77781341 | None:intergenic | 20.0% |
!! | TAAACTTTATATACTTAGAG+TGG | - | chr3_1:77781522-77781541 | Msa0377350:intron | 20.0% |
!! | TTAGTGGTTAATTGTTATAT+TGG | + | chr3_1:77781737-77781756 | None:intergenic | 20.0% |
!!! | TACGCAATTATCTTTATTTT+CGG | - | chr3_1:77781923-77781942 | Msa0377350:intron | 20.0% |
!! | GTGAAATATACAAAATTTGA+TGG | - | chr3_1:77782245-77782264 | Msa0377350:intron | 20.0% |
! | AAATAGATTAGGTTTACTTC+TGG | + | chr3_1:77774823-77774842 | None:intergenic | 25.0% |
! | AATCATATTTGCATGTGTAT+AGG | - | chr3_1:77775128-77775147 | Msa0377350:exon | 25.0% |
!!! | ATCAGTTATTTTCTGTGTTT+CGG | - | chr3_1:77775173-77775192 | Msa0377350:intron | 25.0% |
! | TGATTATTAAATGGCATACA+AGG | - | chr3_1:77775395-77775414 | Msa0377350:intron | 25.0% |
!!! | TTAGATTGGATAGTTGTTTT+AGG | - | chr3_1:77775586-77775605 | Msa0377350:intron | 25.0% |
!!! | TAGATTGGATAGTTGTTTTA+GGG | - | chr3_1:77775587-77775606 | Msa0377350:intron | 25.0% |
! | AATAAGAATCCCTGAATATA+TGG | + | chr3_1:77775697-77775716 | None:intergenic | 25.0% |
! | AATATAAGATTCCATAGGTT+CGG | + | chr3_1:77775802-77775821 | None:intergenic | 25.0% |
!!! | TTATCTTTTTTTTCACCTTC+TGG | - | chr3_1:77775824-77775843 | Msa0377350:intron | 25.0% |
! | AAATCAGTACTGTAATAGAA+AGG | + | chr3_1:77775870-77775889 | None:intergenic | 25.0% |
!!! | GTTTTGATGTTACTAAAAGT+GGG | - | chr3_1:77776058-77776077 | Msa0377350:CDS | 25.0% |
!! | TTTTGATGTTACTAAAAGTG+GGG | - | chr3_1:77776059-77776078 | Msa0377350:CDS | 25.0% |
! | TCTTCCTTCAATTATACTAT+AGG | - | chr3_1:77776196-77776215 | Msa0377350:intron | 25.0% |
! | CAAACAAACAAATTCAAGAT+CGG | + | chr3_1:77776222-77776241 | None:intergenic | 25.0% |
!!! | TTTTCTTGTTTCTTGTTGAA+AGG | + | chr3_1:77776293-77776312 | None:intergenic | 25.0% |
! | TGGATTCTAATTCATTTCAA+AGG | - | chr3_1:77776363-77776382 | Msa0377350:intron | 25.0% |
! | AGTGTTTAATGTATAGAACA+AGG | - | chr3_1:77776469-77776488 | Msa0377350:intron | 25.0% |
! | GTGTTTAATGTATAGAACAA+GGG | - | chr3_1:77776470-77776489 | Msa0377350:intron | 25.0% |
! | TTTGATGTAAATGATATGTC+GGG | - | chr3_1:77776524-77776543 | Msa0377350:intron | 25.0% |
!! | AATAATTTAAAACATCCCTC+AGG | + | chr3_1:77776669-77776688 | None:intergenic | 25.0% |
! | TCTTAATTATATCTTCAGGT+TGG | + | chr3_1:77776697-77776716 | None:intergenic | 25.0% |
! | TATGAACAGGATAGAATAAA+AGG | + | chr3_1:77776889-77776908 | None:intergenic | 25.0% |
! | AAAAAATAGTGCATTTGAGA+TGG | + | chr3_1:77777010-77777029 | None:intergenic | 25.0% |
!! | ATTTTCCCATTTCAAAAAGA+AGG | + | chr3_1:77777034-77777053 | None:intergenic | 25.0% |
!!! | TCAGACAAATTTTTTAACAC+AGG | + | chr3_1:77777164-77777183 | None:intergenic | 25.0% |
!!! | GTTTACTTATTTTGGTTTGT+AGG | - | chr3_1:77777187-77777206 | Msa0377350:intron | 25.0% |
! | GTACAACTAAATTTAGTTGT+AGG | + | chr3_1:77777367-77777386 | None:intergenic | 25.0% |
!!! | TGAAGTTTTATTTGATTGCA+CGG | - | chr3_1:77777772-77777791 | Msa0377350:intron | 25.0% |
! | AATAGAAACAAGTCTAGATT+GGG | + | chr3_1:77777853-77777872 | None:intergenic | 25.0% |
!!! | CTTGTTTCTATTGTCAAATT+AGG | - | chr3_1:77777861-77777880 | Msa0377350:intron | 25.0% |
! | AACTTCAAATAGGCAAAATA+TGG | + | chr3_1:77777889-77777908 | None:intergenic | 25.0% |
! | TATTATCAAATGGACAAACT+TGG | + | chr3_1:77778324-77778343 | None:intergenic | 25.0% |
! | ACATAATATTAATCTCACCT+CGG | + | chr3_1:77778715-77778734 | None:intergenic | 25.0% |
! | AGTAAACATTAAACACATGA+TGG | + | chr3_1:77778804-77778823 | None:intergenic | 25.0% |
! | AAAGTTGTCATTACAAATCA+AGG | + | chr3_1:77778838-77778857 | None:intergenic | 25.0% |
! | CTGCAAATAAAATATTCTGT+AGG | + | chr3_1:77778870-77778889 | None:intergenic | 25.0% |
! | AAAAACATTAGAGAGATAGT+TGG | - | chr3_1:77779310-77779329 | Msa0377350:intron | 25.0% |
! | AAAACATTAGAGAGATAGTT+GGG | - | chr3_1:77779311-77779330 | Msa0377350:intron | 25.0% |
!! | GTTTCTCTTATAGTTTTTCT+TGG | + | chr3_1:77779473-77779492 | None:intergenic | 25.0% |
! | AAATCTAGAGATTAATCAGT+TGG | - | chr3_1:77779502-77779521 | Msa0377350:intron | 25.0% |
! | TAACCTATAGTTAAATGAGT+TGG | - | chr3_1:77779690-77779709 | Msa0377350:intron | 25.0% |
! | ATGATGAATGAAGTTTGTAT+CGG | - | chr3_1:77779755-77779774 | Msa0377350:intron | 25.0% |
! | ATAAACCTGTATAATAAGCA+AGG | - | chr3_1:77780120-77780139 | Msa0377350:intron | 25.0% |
!!! | TTGGATTTATTTTCTACTTC+AGG | - | chr3_1:77780378-77780397 | Msa0377350:intron | 25.0% |
! | GTTAAATTAAAGGAACCAAA+TGG | + | chr3_1:77780862-77780881 | None:intergenic | 25.0% |
! | AGCAACTACAGTTAAATTAA+AGG | + | chr3_1:77780872-77780891 | None:intergenic | 25.0% |
! | TTAATTTAACTGTAGTTGCT+TGG | - | chr3_1:77780872-77780891 | Msa0377350:intron | 25.0% |
!! | TTAAAAGGCAATTAGTTTCT+GGG | + | chr3_1:77780965-77780984 | None:intergenic | 25.0% |
!! | TTTAAAAGGCAATTAGTTTC+TGG | + | chr3_1:77780966-77780985 | None:intergenic | 25.0% |
!!! | CTTGTTGAGAGAATTTTTTT+TGG | - | chr3_1:77781049-77781068 | Msa0377350:intron | 25.0% |
! | CGTATTTATACTAAACCTAA+AGG | - | chr3_1:77781177-77781196 | Msa0377350:CDS | 25.0% |
! | TCTTAGATGACAATATTACA+GGG | + | chr3_1:77781224-77781243 | None:intergenic | 25.0% |
! | TTCTTAGATGACAATATTAC+AGG | + | chr3_1:77781225-77781244 | None:intergenic | 25.0% |
! | GACAACAGCATATTAATAAA+AGG | + | chr3_1:77781463-77781482 | None:intergenic | 25.0% |
! | ATTAATATGCTGTTGTCATT+AGG | - | chr3_1:77781466-77781485 | Msa0377350:intron | 25.0% |
! | AATTAATATATCCTCTCCTT+GGG | - | chr3_1:77781616-77781635 | Msa0377350:intron | 25.0% |
! | CTGAATAAGAAACAAGTAAT+TGG | + | chr3_1:77782214-77782233 | None:intergenic | 25.0% |
!! | TACTTGTTTCTTATTCAGAT+AGG | - | chr3_1:77782216-77782235 | Msa0377350:intron | 25.0% |
!! | ACTTGTTTCTTATTCAGATA+GGG | - | chr3_1:77782217-77782236 | Msa0377350:intron | 25.0% |
! | TTGTAAAGATTACAATTTGC+TGG | - | chr3_1:77782376-77782395 | Msa0377350:five_prime_UTR | 25.0% |
CTAGAACAAATATGCAGAAA+TGG | + | chr3_1:77774690-77774709 | None:intergenic | 30.0% | |
GAAGGAAAGGAAAATAGATT+AGG | + | chr3_1:77774834-77774853 | None:intergenic | 30.0% | |
!! | TCAGTTATTTTCTGTGTTTC+GGG | - | chr3_1:77775174-77775193 | Msa0377350:intron | 30.0% |
CATATCATCAATTGCTTTGA+CGG | + | chr3_1:77775217-77775236 | None:intergenic | 30.0% | |
!!! | CGGTTATTGTTTTTTACAGA+TGG | - | chr3_1:77775307-77775326 | Msa0377350:intron | 30.0% |
! | CATATATATGACCAGTGTTT+TGG | - | chr3_1:77775435-77775454 | Msa0377350:intron | 30.0% |
!!! | GAAGTTTTATTTGTAAGCAC+AGG | - | chr3_1:77775638-77775657 | Msa0377350:intron | 30.0% |
AAACTTTAAACATAGGGAGA+GGG | + | chr3_1:77775745-77775764 | None:intergenic | 30.0% | |
TAAACTTTAAACATAGGGAG+AGG | + | chr3_1:77775746-77775765 | None:intergenic | 30.0% | |
! | TCTCCCTATGTTTAAAGTTT+AGG | - | chr3_1:77775745-77775764 | Msa0377350:intron | 30.0% |
!! | GGTTTTGATGTTACTAAAAG+TGG | - | chr3_1:77776057-77776076 | Msa0377350:CDS | 30.0% |
TTGGAGTGATTATTATCCAA+TGG | - | chr3_1:77776250-77776269 | Msa0377350:intron | 30.0% | |
TATTTGAAAATAGCAGTGCA+AGG | + | chr3_1:77776327-77776346 | None:intergenic | 30.0% | |
AAATAAAGTGATTGTGTACG+AGG | - | chr3_1:77776420-77776439 | Msa0377350:intron | 30.0% | |
!! | GGTTTTTCAACAAAAAGACA+AGG | - | chr3_1:77776545-77776564 | Msa0377350:CDS | 30.0% |
! | GTCTAGAATTAGCTTCAAAA+AGG | + | chr3_1:77776584-77776603 | None:intergenic | 30.0% |
TGTTTGACTGATCATACAAT+GGG | - | chr3_1:77776859-77776878 | Msa0377350:intron | 30.0% | |
ACATGAGGAATAATATGAAC+AGG | + | chr3_1:77776902-77776921 | None:intergenic | 30.0% | |
ACTCAAATAATGCATCAGAT+AGG | + | chr3_1:77776928-77776947 | None:intergenic | 30.0% | |
GATTGCTTTCTCTTTGTATT+GGG | - | chr3_1:77777099-77777118 | Msa0377350:intron | 30.0% | |
TTTCTCTTTGTATTGGGTTT+GGG | - | chr3_1:77777105-77777124 | Msa0377350:intron | 30.0% | |
! | TTTTAACACAGGCTAAAACT+TGG | + | chr3_1:77777153-77777172 | None:intergenic | 30.0% |
TTGAATTTCATGTCGTTGTA+AGG | + | chr3_1:77777305-77777324 | None:intergenic | 30.0% | |
GTCAAAAGCTATTTGTATAG+AGG | + | chr3_1:77777438-77777457 | None:intergenic | 30.0% | |
!!! | GTTTCCAAGGATCTTTTTTT+TGG | - | chr3_1:77777479-77777498 | Msa0377350:intron | 30.0% |
ATGTCCAAAAAAAAGATCCT+TGG | + | chr3_1:77777486-77777505 | None:intergenic | 30.0% | |
!!! | AGGATCTTTTTTTTGGACAT+TGG | - | chr3_1:77777486-77777505 | Msa0377350:intron | 30.0% |
! | TATTTGAAACCTATTTGGGT+TGG | - | chr3_1:77777629-77777648 | Msa0377350:intron | 30.0% |
!!! | GAAGTTTTATTTGATTGCAC+GGG | - | chr3_1:77777773-77777792 | Msa0377350:intron | 30.0% |
CAATAGAAACAAGTCTAGAT+TGG | + | chr3_1:77777854-77777873 | None:intergenic | 30.0% | |
ATATCTCATGATAGACAAGA+CGG | - | chr3_1:77777997-77778016 | Msa0377350:intron | 30.0% | |
! | CTCTTGTTATCAATTGCATT+TGG | - | chr3_1:77778271-77778290 | Msa0377350:intron | 30.0% |
! | TTGTTAGATAGTGGTTATAG+TGG | + | chr3_1:77778471-77778490 | None:intergenic | 30.0% |
TGCAAAATGTTGTTAGATAG+TGG | + | chr3_1:77778480-77778499 | None:intergenic | 30.0% | |
TAGAAAATGTTGTCAGATAG+CGG | + | chr3_1:77778548-77778567 | None:intergenic | 30.0% | |
!!! | CAGTTTTGAAAGAACAAACT+TGG | + | chr3_1:77778669-77778688 | None:intergenic | 30.0% |
AGTGTTTGTCTGTATAAATG+AGG | + | chr3_1:77778928-77778947 | None:intergenic | 30.0% | |
ATAAGACGCTTATGAGTTAT+TGG | + | chr3_1:77779045-77779064 | None:intergenic | 30.0% | |
CTTATTGAAAAAGAGCTAGA+AGG | - | chr3_1:77779060-77779079 | Msa0377350:intron | 30.0% | |
!! | CGATTATTTTATTCTCGTGT+TGG | + | chr3_1:77779232-77779251 | None:intergenic | 30.0% |
!! | CTAGTCTTACTAGAAATTCA+AGG | + | chr3_1:77779275-77779294 | None:intergenic | 30.0% |
AAACATTAGAGAGATAGTTG+GGG | - | chr3_1:77779312-77779331 | Msa0377350:intron | 30.0% | |
AATAATGAGAGTAGATCAGA+TGG | - | chr3_1:77779415-77779434 | Msa0377350:intron | 30.0% | |
TGACCAACTCATTTAACTAT+AGG | + | chr3_1:77779696-77779715 | None:intergenic | 30.0% | |
!! | ACTCTGAAAGAAAGCATTTA+CGG | - | chr3_1:77779789-77779808 | Msa0377350:intron | 30.0% |
!! | AAGAAAGCATTTACGGTTAT+TGG | - | chr3_1:77779796-77779815 | Msa0377350:intron | 30.0% |
! | TGCATACTCTGATTTGATTT+AGG | - | chr3_1:77779833-77779852 | Msa0377350:intron | 30.0% |
! | ACTCTGATTTGATTTAGGTT+TGG | - | chr3_1:77779838-77779857 | Msa0377350:intron | 30.0% |
CACAAGATTCAATAATCTCT+CGG | + | chr3_1:77779895-77779914 | None:intergenic | 30.0% | |
TTGATCAAGGTTATTCACAA+GGG | + | chr3_1:77779947-77779966 | None:intergenic | 30.0% | |
! | TAAGTGCTGTACATTAACTT+TGG | - | chr3_1:77780061-77780080 | Msa0377350:intron | 30.0% |
CATTAACTTTGGTCCATATA+AGG | - | chr3_1:77780072-77780091 | Msa0377350:intron | 30.0% | |
GAAGGATGGTATAGTAATAT+GGG | - | chr3_1:77780094-77780113 | Msa0377350:intron | 30.0% | |
TCTTTCCTTGCTTATTATAC+AGG | + | chr3_1:77780128-77780147 | None:intergenic | 30.0% | |
GAGGAATTTGGTTAAATGAA+AGG | - | chr3_1:77780205-77780224 | Msa0377350:intron | 30.0% | |
! | TCAAAATTTGCGTGTGATTT+TGG | + | chr3_1:77780303-77780322 | None:intergenic | 30.0% |
!!! | AATGATTTTTTTCCCGAAAG+GGG | + | chr3_1:77780743-77780762 | None:intergenic | 30.0% |
!!! | CAATGATTTTTTTCCCGAAA+GGG | + | chr3_1:77780744-77780763 | None:intergenic | 30.0% |
!!! | ACAATGATTTTTTTCCCGAA+AGG | + | chr3_1:77780745-77780764 | None:intergenic | 30.0% |
! | ATATTTTATCGCCTTCCATT+TGG | - | chr3_1:77780844-77780863 | Msa0377350:intron | 30.0% |
AATTAAAGGAACCAAATGGA+AGG | + | chr3_1:77780858-77780877 | None:intergenic | 30.0% | |
TGAACATGCATAATAAAGGA+AGG | + | chr3_1:77780926-77780945 | None:intergenic | 30.0% | |
GGATTGAACATGCATAATAA+AGG | + | chr3_1:77780930-77780949 | None:intergenic | 30.0% | |
CAACAAGCATTCTTTACAAA+AGG | + | chr3_1:77781036-77781055 | None:intergenic | 30.0% | |
! | AATTAGTCAAACTTCTAGGA+AGG | + | chr3_1:77781076-77781095 | None:intergenic | 30.0% |
AGACAATTAGTCAAACTTCT+AGG | + | chr3_1:77781080-77781099 | None:intergenic | 30.0% | |
GAATTGTCATCAATCTTGTT+AGG | - | chr3_1:77781434-77781453 | Msa0377350:intron | 30.0% | |
! | TTTGGTGAATTAGCTTAGTT+TGG | - | chr3_1:77781553-77781572 | Msa0377350:intron | 30.0% |
! | TTGGTGAATTAGCTTAGTTT+GGG | - | chr3_1:77781554-77781573 | Msa0377350:intron | 30.0% |
TAGCATATTGTTCAATGAAG+AGG | - | chr3_1:77781583-77781602 | Msa0377350:intron | 30.0% | |
GAATTAATATATCCTCTCCT+TGG | - | chr3_1:77781615-77781634 | Msa0377350:intron | 30.0% | |
ATTAATATATCCTCTCCTTG+GGG | - | chr3_1:77781617-77781636 | Msa0377350:intron | 30.0% | |
! | TTTTGAATGGCAAATGTTAG+TGG | + | chr3_1:77781753-77781772 | None:intergenic | 30.0% |
AAAAATTTGTCAAGTGCAGT+AGG | + | chr3_1:77781793-77781812 | None:intergenic | 30.0% | |
!! | AAAATGTAAGCATTGGATGA+AGG | + | chr3_1:77781822-77781841 | None:intergenic | 30.0% |
CATTTGGAAAATGTAAGCAT+TGG | + | chr3_1:77781829-77781848 | None:intergenic | 30.0% | |
CATGTTCCTGAAACATAATA+AGG | + | chr3_1:77782033-77782052 | None:intergenic | 30.0% | |
TTCTTATTCAGATAGGGATT+AGG | - | chr3_1:77782223-77782242 | Msa0377350:intron | 30.0% | |
!! | TTAAACCATTTGTTGTTGAG+TGG | - | chr3_1:77782272-77782291 | Msa0377350:intron | 30.0% |
!!! | TGCTGTTTTTCTGTTAGTTT+TGG | - | chr3_1:77782295-77782314 | Msa0377350:intron | 30.0% |
ATGTCTCTAACAGAGTAATT+GGG | - | chr3_1:77782344-77782363 | Msa0377350:exon | 30.0% | |
AATGAAATTACGCATCAGTT+TGG | - | chr3_1:77782467-77782486 | Msa0377350:five_prime_UTR | 30.0% | |
TTATGATCCAGAGATTAAGA+CGG | + | chr3_1:77782523-77782542 | None:intergenic | 30.0% | |
AATCAAAGACATCGAAGATG+AGG | - | chr3_1:77774895-77774914 | Msa0377350:three_prime_UTR | 35.0% | |
ATTTGCATGTGTATAGGTTG+AGG | - | chr3_1:77775134-77775153 | Msa0377350:CDS | 35.0% | |
!!! | TTGGTTGTTGGTTTCTGTTT+TGG | - | chr3_1:77775454-77775473 | Msa0377350:intron | 35.0% |
CACTTGTCACCATATATTCA+GGG | - | chr3_1:77775685-77775704 | Msa0377350:intron | 35.0% | |
TAAACTTGCAAAACTGAGGA+GGG | - | chr3_1:77775990-77776009 | Msa0377350:CDS | 35.0% | |
ACTCTGCTGAATAAATTGAC+TGG | - | chr3_1:77776126-77776145 | Msa0377350:intron | 35.0% | |
CTCTGCTGAATAAATTGACT+GGG | - | chr3_1:77776127-77776146 | Msa0377350:intron | 35.0% | |
TCGGCCTATAGTATAATTGA+AGG | + | chr3_1:77776203-77776222 | None:intergenic | 35.0% | |
TTATTATCCAATGGTTCCCA+AGG | - | chr3_1:77776259-77776278 | Msa0377350:intron | 35.0% | |
ATACATGAAAACCAATCCTG+AGG | - | chr3_1:77776650-77776669 | Msa0377350:CDS | 35.0% | |
TACATGAAAACCAATCCTGA+GGG | - | chr3_1:77776651-77776670 | Msa0377350:CDS | 35.0% | |
! | TTTAAAACATCCCTCAGGAT+TGG | + | chr3_1:77776664-77776683 | None:intergenic | 35.0% |
GTGTTTGACTGATCATACAA+TGG | - | chr3_1:77776858-77776877 | Msa0377350:intron | 35.0% | |
! | AAATAGTGCATTTGAGATGG+AGG | + | chr3_1:77777007-77777026 | None:intergenic | 35.0% |
TAAGAAGTCACATGTGCATA+TGG | - | chr3_1:77777076-77777095 | Msa0377350:intron | 35.0% | |
AAGAAGTCACATGTGCATAT+GGG | - | chr3_1:77777077-77777096 | Msa0377350:intron | 35.0% | |
GGATTGCTTTCTCTTTGTAT+TGG | - | chr3_1:77777098-77777117 | Msa0377350:intron | 35.0% | |
CTTTCTCTTTGTATTGGGTT+TGG | - | chr3_1:77777104-77777123 | Msa0377350:intron | 35.0% | |
AGTTAGTGTAGTGAACTCAT+AGG | + | chr3_1:77777219-77777238 | None:intergenic | 35.0% | |
ATATCGTGGAGCAAAAATTC+AGG | - | chr3_1:77777259-77777278 | Msa0377350:intron | 35.0% | |
!!! | GTTTTTGGTTTGAGGAATTC+AGG | - | chr3_1:77777338-77777357 | Msa0377350:intron | 35.0% |
!!! | TTTTTTTGGACATTGGTGCA+TGG | - | chr3_1:77777493-77777512 | Msa0377350:intron | 35.0% |
!!! | TTTTTTGGACATTGGTGCAT+GGG | - | chr3_1:77777494-77777513 | Msa0377350:intron | 35.0% |
AAGTGGCAGAAACTTCAAAT+AGG | + | chr3_1:77777899-77777918 | None:intergenic | 35.0% | |
TTTCATCCCTGAAAACTTTC+AGG | - | chr3_1:77778053-77778072 | Msa0377350:intron | 35.0% | |
! | TCAAGTCCTGAAAGTTTTCA+GGG | + | chr3_1:77778062-77778081 | None:intergenic | 35.0% |
! | ATCAAGTCCTGAAAGTTTTC+AGG | + | chr3_1:77778063-77778082 | None:intergenic | 35.0% |
! | TAATTTTGTGTGTCAGTTGC+TGG | - | chr3_1:77778181-77778200 | Msa0377350:CDS | 35.0% |
AAATGGACAAACTTGGCTAA+TGG | + | chr3_1:77778317-77778336 | None:intergenic | 35.0% | |
AACAAGCGCGTATTATCAAA+TGG | + | chr3_1:77778334-77778353 | None:intergenic | 35.0% | |
TAAATTCCGCTACACTATAG+CGG | - | chr3_1:77778601-77778620 | Msa0377350:intron | 35.0% | |
GAAAGAACAAACTTGGCTAA+TGG | + | chr3_1:77778662-77778681 | None:intergenic | 35.0% | |
! | TTACATTTTTCTCAATGCCG+AGG | - | chr3_1:77778695-77778714 | Msa0377350:intron | 35.0% |
AACACATGATGGTAACTTCA+TGG | + | chr3_1:77778793-77778812 | None:intergenic | 35.0% | |
! | CAGCAATTATCGACTATGTT+TGG | - | chr3_1:77778887-77778906 | Msa0377350:intron | 35.0% |
GAAAAAGAGCTAGAAGGATT+TGG | - | chr3_1:77779066-77779085 | Msa0377350:intron | 35.0% | |
GTATCGTACAACTTAAAGAC+TGG | - | chr3_1:77779169-77779188 | Msa0377350:intron | 35.0% | |
CTAGTAAGACTAGACATGAT+AGG | - | chr3_1:77779282-77779301 | Msa0377350:intron | 35.0% | |
AGCTAGTGTAGAAAACATAG+TGG | - | chr3_1:77779339-77779358 | Msa0377350:intron | 35.0% | |
!! | GAATGAAGTTTGTATCGGTT+AGG | - | chr3_1:77779760-77779779 | Msa0377350:intron | 35.0% |
AAGCATTTACGGTTATTGGT+TGG | - | chr3_1:77779800-77779819 | Msa0377350:intron | 35.0% | |
CGAGAGATTATTGAATCTTG+TGG | - | chr3_1:77779893-77779912 | Msa0377350:intron | 35.0% | |
GAGATTATTGAATCTTGTGG+AGG | - | chr3_1:77779896-77779915 | Msa0377350:intron | 35.0% | |
TGATCAAGGTTATTCACAAG+GGG | + | chr3_1:77779946-77779965 | None:intergenic | 35.0% | |
CTTGATCAAGGTTATTCACA+AGG | + | chr3_1:77779948-77779967 | None:intergenic | 35.0% | |
ACGTCATCAAAACTTGATCA+AGG | + | chr3_1:77779960-77779979 | None:intergenic | 35.0% | |
!!! | TGATCAAGTTTTGATGACGT+TGG | - | chr3_1:77779960-77779979 | Msa0377350:CDS | 35.0% |
! | TGGCTGTAACTGTAAGTTTT+TGG | + | chr3_1:77780006-77780025 | None:intergenic | 35.0% |
ACTACTAACAAGTTCAACAG+TGG | + | chr3_1:77780026-77780045 | None:intergenic | 35.0% | |
AACTTTGGTCCATATAAGGA+AGG | - | chr3_1:77780076-77780095 | Msa0377350:intron | 35.0% | |
CTATACCATCCTTCCTTATA+TGG | + | chr3_1:77780088-77780107 | None:intergenic | 35.0% | |
GGAAGGATGGTATAGTAATA+TGG | - | chr3_1:77780093-77780112 | Msa0377350:intron | 35.0% | |
TGGATTTCTCATCATCTGAA+TGG | + | chr3_1:77780283-77780302 | None:intergenic | 35.0% | |
ACTTTCAGGAGGAAAGAAAA+GGG | - | chr3_1:77780425-77780444 | Msa0377350:intron | 35.0% | |
TGACCTTATAGATGTCATTG+AGG | - | chr3_1:77780571-77780590 | Msa0377350:intron | 35.0% | |
GACCTTATAGATGTCATTGA+GGG | - | chr3_1:77780572-77780591 | Msa0377350:intron | 35.0% | |
TTGTTCACAACATAGATGCA+GGG | + | chr3_1:77780614-77780633 | None:intergenic | 35.0% | |
GTTACAAGAATTACCTGACA+GGG | + | chr3_1:77780694-77780713 | None:intergenic | 35.0% | |
TGACTGAGGTAACAATAACA+TGG | + | chr3_1:77780716-77780735 | None:intergenic | 35.0% | |
! | AATCCAAGCCCTTTTACATA+AGG | + | chr3_1:77780783-77780802 | None:intergenic | 35.0% |
CATAATAAAGGAAGGTAGAC+AGG | + | chr3_1:77780918-77780937 | None:intergenic | 35.0% | |
TAGTCAGGATTCATACCTTT+AGG | + | chr3_1:77781195-77781214 | None:intergenic | 35.0% | |
!! | AGATATTTAGTTCTGGGAGA+AGG | + | chr3_1:77781315-77781334 | None:intergenic | 35.0% |
ACAATTCAGATCTACTTGCT+CGG | + | chr3_1:77781421-77781440 | None:intergenic | 35.0% | |
CTTAGAGTGGATCTTTAGTT+TGG | - | chr3_1:77781535-77781554 | Msa0377350:intron | 35.0% | |
! | TGGTGAATTAGCTTAGTTTG+GGG | - | chr3_1:77781555-77781574 | Msa0377350:intron | 35.0% |
TTAATATATCCTCTCCTTGG+GGG | - | chr3_1:77781618-77781637 | Msa0377350:intron | 35.0% | |
!!! | TGGTTTTTTTAATCCTTGCC+AGG | + | chr3_1:77781702-77781721 | None:intergenic | 35.0% |
GTGAAGATGCATGTTATAAG+TGG | - | chr3_1:77782003-77782022 | Msa0377350:intron | 35.0% | |
! | GGAATGCCTTATTATGTTTC+AGG | - | chr3_1:77782024-77782043 | Msa0377350:intron | 35.0% |
CATGTCTCTAACAGAGTAAT+TGG | - | chr3_1:77782343-77782362 | Msa0377350:exon | 35.0% | |
TGTCTCTAACAGAGTAATTG+GGG | - | chr3_1:77782345-77782364 | Msa0377350:exon | 35.0% | |
! | GTTCGTTCTAGTTGGATATT+CGG | - | chr3_1:77782421-77782440 | Msa0377350:five_prime_UTR | 35.0% |
! | TTCGTTCTAGTTGGATATTC+GGG | - | chr3_1:77782422-77782441 | Msa0377350:five_prime_UTR | 35.0% |
TGTAGAAGAAAACGAGAACG+AGG | + | chr3_1:77774722-77774741 | None:intergenic | 40.0% | |
! | TGGAGTTTGAAACCTAAGAG+CGG | + | chr3_1:77774782-77774801 | None:intergenic | 40.0% |
TTGTTGAAGAACGAGAAGCT+CGG | + | chr3_1:77774856-77774875 | None:intergenic | 40.0% | |
AGCTTCTCGTTCTTCAACAA+TGG | - | chr3_1:77774856-77774875 | Msa0377350:three_prime_UTR | 40.0% | |
GGCGAAAACTCAAAAGAACA+AGG | - | chr3_1:77775328-77775347 | Msa0377350:CDS | 40.0% | |
AAGGCTACTGCTCATCATTT+GGG | - | chr3_1:77775347-77775366 | Msa0377350:CDS | 40.0% | |
! | TCATCATTTGGGGTTACTGA+AGG | - | chr3_1:77775358-77775377 | Msa0377350:intron | 40.0% |
!!! | ATGACCAGTGTTTTGGTTGT+TGG | - | chr3_1:77775442-77775461 | Msa0377350:intron | 40.0% |
GAAACCAACAACCAAAACAC+TGG | + | chr3_1:77775449-77775468 | None:intergenic | 40.0% | |
!!! | GTTGGTTTCTGTTTTGGCTT+TGG | - | chr3_1:77775460-77775479 | Msa0377350:intron | 40.0% |
!!! | GTTGTTTTAGGGATTGCGTT+TGG | - | chr3_1:77775598-77775617 | Msa0377350:intron | 40.0% |
TGCATAACACATTCTGCTCA+TGG | - | chr3_1:77775662-77775681 | Msa0377350:intron | 40.0% | |
GCACTTGTCACCATATATTC+AGG | - | chr3_1:77775684-77775703 | Msa0377350:intron | 40.0% | |
TTAAACATAGGGAGAGGGAT+AGG | + | chr3_1:77775740-77775759 | None:intergenic | 40.0% | |
! | TGTCTAAAACTCCGAACCTA+TGG | - | chr3_1:77775788-77775807 | Msa0377350:intron | 40.0% |
! | TGTCGACTATAGAAACCAGA+AGG | + | chr3_1:77775842-77775861 | None:intergenic | 40.0% |
! | TTTTAACGCTTGTCCACCAT+TGG | - | chr3_1:77775959-77775978 | Msa0377350:CDS | 40.0% |
AGGCTAAACTTGCAAAACTG+AGG | - | chr3_1:77775986-77776005 | Msa0377350:CDS | 40.0% | |
CTAAACTTGCAAAACTGAGG+AGG | - | chr3_1:77775989-77776008 | Msa0377350:CDS | 40.0% | |
ACTCCTTACACCTACAACTA+AGG | - | chr3_1:77776014-77776033 | Msa0377350:CDS | 40.0% | |
CTCCTTACACCTACAACTAA+GGG | - | chr3_1:77776015-77776034 | Msa0377350:CDS | 40.0% | |
! | ATTGACTGGGACATTTTCAG+AGG | - | chr3_1:77776140-77776159 | Msa0377350:intron | 40.0% |
TTGAAAGGTTGCACTTCCTT+GGG | + | chr3_1:77776278-77776297 | None:intergenic | 40.0% | |
TGAAAATAGCAGTGCAAGGT+TGG | + | chr3_1:77776323-77776342 | None:intergenic | 40.0% | |
TTTGTATTGGGTTTGGGTGA+TGG | - | chr3_1:77777111-77777130 | Msa0377350:intron | 40.0% | |
TTGTATTGGGTTTGGGTGAT+GGG | - | chr3_1:77777112-77777131 | Msa0377350:intron | 40.0% | |
! | ACTACACTAACTTGCATTCC+AGG | - | chr3_1:77777227-77777246 | Msa0377350:intron | 40.0% |
ATTGAAACTGAGACCTTGAG+AGG | + | chr3_1:77777690-77777709 | None:intergenic | 40.0% | |
ATAGAGACGACTGTACTAAG+TGG | + | chr3_1:77777916-77777935 | None:intergenic | 40.0% | |
GATCTCCCTGGAATTATTGA+GGG | - | chr3_1:77778203-77778222 | Msa0377350:CDS | 40.0% | |
! | TGATTGACAACACTGGCTAA+CGG | + | chr3_1:77778392-77778411 | None:intergenic | 40.0% |
CTATCTGTGATTGACAACAC+TGG | + | chr3_1:77778399-77778418 | None:intergenic | 40.0% | |
GTGTTGTCAATCACAGATAG+CGG | - | chr3_1:77778399-77778418 | Msa0377350:intron | 40.0% | |
! | TTGTCAGATAGCGGTTATAG+TGG | + | chr3_1:77778539-77778558 | None:intergenic | 40.0% |
ACTATACCGCTATAGTGTAG+CGG | + | chr3_1:77778610-77778629 | None:intergenic | 40.0% | |
GTATACTGTTCTGCAAACAC+AGG | - | chr3_1:77778963-77778982 | Msa0377350:intron | 40.0% | |
CACAGGTTATTAGTACTGCA+AGG | - | chr3_1:77778980-77778999 | Msa0377350:CDS | 40.0% | |
AGCTAGAAGGATTTGGCATA+AGG | - | chr3_1:77779073-77779092 | Msa0377350:intron | 40.0% | |
TAAAGACTGGAGATGTTGTG+TGG | - | chr3_1:77779182-77779201 | Msa0377350:intron | 40.0% | |
AAAGACTGGAGATGTTGTGT+GGG | - | chr3_1:77779183-77779202 | Msa0377350:intron | 40.0% | |
! | CATAGTGGAAATGCAAGCTT+AGG | - | chr3_1:77779354-77779373 | Msa0377350:intron | 40.0% |
AAATGCAAGCTTAGGTGAGA+TGG | - | chr3_1:77779362-77779381 | Msa0377350:intron | 40.0% | |
TCTACATGTCTTCTCTCTAC+AGG | + | chr3_1:77779389-77779408 | None:intergenic | 40.0% | |
AATGAGAGTAGATCAGATGG+AGG | - | chr3_1:77779418-77779437 | Msa0377350:intron | 40.0% | |
ATGAGAGTAGATCAGATGGA+GGG | - | chr3_1:77779419-77779438 | Msa0377350:intron | 40.0% | |
! | AGTCAAATCTCTAGAGACGA+AGG | - | chr3_1:77779443-77779462 | Msa0377350:intron | 40.0% |
TTGCTGTGTCACCAATTATG+TGG | - | chr3_1:77779614-77779633 | Msa0377350:intron | 40.0% | |
TAGTAATAAGTGGAGTCCCA+TGG | + | chr3_1:77779647-77779666 | None:intergenic | 40.0% | |
TCTCTCGGAATCAAACTTCA+TGG | + | chr3_1:77779880-77779899 | None:intergenic | 40.0% | |
GGAGGATTACTTTGTGTATG+TGG | - | chr3_1:77779914-77779933 | Msa0377350:intron | 40.0% | |
TTGGTCCATATAAGGAAGGA+TGG | - | chr3_1:77780080-77780099 | Msa0377350:intron | 40.0% | |
ATTCCTCTCCCAGAAAATCT+GGG | + | chr3_1:77780192-77780211 | None:intergenic | 40.0% | |
AATTCCTCTCCCAGAAAATC+TGG | + | chr3_1:77780193-77780212 | None:intergenic | 40.0% | |
!! | GATTTTCTGGGAGAGGAATT+TGG | - | chr3_1:77780193-77780212 | Msa0377350:intron | 40.0% |
!! | ATTGTCCGTTACTGACTTTC+TGG | - | chr3_1:77780253-77780272 | Msa0377350:intron | 40.0% |
TTTCTTTCCTCCTGAAAGTC+AGG | + | chr3_1:77780424-77780443 | None:intergenic | 40.0% | |
GACTTTCAGGAGGAAAGAAA+AGG | - | chr3_1:77780424-77780443 | Msa0377350:intron | 40.0% | |
CACGGTATCAAGATCTAGAT+GGG | + | chr3_1:77780483-77780502 | None:intergenic | 40.0% | |
TCACGGTATCAAGATCTAGA+TGG | + | chr3_1:77780484-77780503 | None:intergenic | 40.0% | |
TCTAGATCTTGATACCGTGA+AGG | - | chr3_1:77780484-77780503 | Msa0377350:intron | 40.0% | |
ATCTATAAGGTCATCTGCAG+TGG | + | chr3_1:77780564-77780583 | None:intergenic | 40.0% | |
TGCCCTCAATGACATCTATA+AGG | + | chr3_1:77780577-77780596 | None:intergenic | 40.0% | |
CTTGTTCACAACATAGATGC+AGG | + | chr3_1:77780615-77780634 | None:intergenic | 40.0% | |
GATTGATCAGATCACACTTG+AGG | - | chr3_1:77780634-77780653 | Msa0377350:intron | 40.0% | |
GGTTACAAGAATTACCTGAC+AGG | + | chr3_1:77780695-77780714 | None:intergenic | 40.0% | |
CATCCTTATGTAAAAGGGCT+TGG | - | chr3_1:77780777-77780796 | Msa0377350:intron | 40.0% | |
GGTAGACAGGTATGAAATGA+GGG | + | chr3_1:77780905-77780924 | None:intergenic | 40.0% | |
AGGTAGACAGGTATGAAATG+AGG | + | chr3_1:77780906-77780925 | None:intergenic | 40.0% | |
ATGGGCTTCTGGATAAAGTT+TGG | - | chr3_1:77781136-77781155 | Msa0377350:CDS | 40.0% | |
TGGGCTTCTGGATAAAGTTT+GGG | - | chr3_1:77781137-77781156 | Msa0377350:CDS | 40.0% | |
TAATATATCCTCTCCTTGGG+GGG | - | chr3_1:77781619-77781638 | Msa0377350:intron | 40.0% | |
ATCCTCTAGTATCTCATGCA+GGG | + | chr3_1:77782132-77782151 | None:intergenic | 40.0% | |
TCTTAGTAAGACTTTCCCCA+GGG | - | chr3_1:77782173-77782192 | Msa0377350:intron | 40.0% | |
TTTGGAAATGATGCGTCTTG+TGG | - | chr3_1:77782313-77782332 | Msa0377350:CDS | 40.0% | |
TTGGAAATGATGCGTCTTGT+GGG | - | chr3_1:77782314-77782333 | Msa0377350:CDS | 40.0% | |
CTGTGATTGTTCGTTCTAGT+TGG | - | chr3_1:77782413-77782432 | Msa0377350:five_prime_UTR | 40.0% | |
ATATTCGGGTATGCATATGC+TGG | - | chr3_1:77782436-77782455 | Msa0377350:five_prime_UTR | 40.0% | |
TGCTTAACCGTCTTAATCTC+TGG | - | chr3_1:77782513-77782532 | Msa0377350:five_prime_UTR | 40.0% | |
AGAGCGGTGGTGAAATGTTA+CGG | + | chr3_1:77774766-77774785 | None:intergenic | 45.0% | |
AACATTTCACCACCGCTCTT+AGG | - | chr3_1:77774767-77774786 | Msa0377350:three_prime_UTR | 45.0% | |
! | AGTTTGAAACCTAAGAGCGG+TGG | + | chr3_1:77774779-77774798 | None:intergenic | 45.0% |
GGAGAGAAGCGAAGTAAGAT+TGG | + | chr3_1:77774802-77774821 | None:intergenic | 45.0% | |
TCGTTCTTCAACAATGGCGA+CGG | - | chr3_1:77774862-77774881 | Msa0377350:three_prime_UTR | 45.0% | |
CAAGGCTACTGCTCATCATT+TGG | - | chr3_1:77775346-77775365 | Msa0377350:CDS | 45.0% | |
AGGCTACTGCTCATCATTTG+GGG | - | chr3_1:77775348-77775367 | Msa0377350:CDS | 45.0% | |
!!! | GGTTTCTGTTTTGGCTTTGG+TGG | - | chr3_1:77775463-77775482 | Msa0377350:intron | 45.0% |
!!! | TTCTGTTTTGGCTTTGGTGG+AGG | - | chr3_1:77775466-77775485 | Msa0377350:intron | 45.0% |
CAAGTTTAGCCTAGCACCAA+TGG | + | chr3_1:77775978-77775997 | None:intergenic | 45.0% | |
CTCCCTTAGTTGTAGGTGTA+AGG | + | chr3_1:77776020-77776039 | None:intergenic | 45.0% | |
CTTACACCTACAACTAAGGG+AGG | - | chr3_1:77776018-77776037 | Msa0377350:CDS | 45.0% | |
AAAAGTGGGGATGCAAGAGT+CGG | - | chr3_1:77776072-77776091 | Msa0377350:CDS | 45.0% | |
AGAGTAGACTTGCCAACTGA+CGG | + | chr3_1:77776111-77776130 | None:intergenic | 45.0% | |
!! | TGGGACATTTTCAGAGGTAC+AGG | - | chr3_1:77776146-77776165 | Msa0377350:intron | 45.0% |
GTTGAAAGGTTGCACTTCCT+TGG | + | chr3_1:77776279-77776298 | None:intergenic | 45.0% | |
! | GCATCAGATAGGAGTACATG+AGG | + | chr3_1:77776917-77776936 | None:intergenic | 45.0% |
! | TAGTGCATTTGAGATGGAGG+AGG | + | chr3_1:77777004-77777023 | None:intergenic | 45.0% |
TCTCGACTAGCATCAGAAAG+AGG | + | chr3_1:77777389-77777408 | None:intergenic | 45.0% | |
GCACATGCACTTAGTTTCCA+AGG | - | chr3_1:77777466-77777485 | Msa0377350:intron | 45.0% | |
CATGGGTCGAAACATTGTGA+TGG | - | chr3_1:77777511-77777530 | Msa0377350:intron | 45.0% | |
GTCTCAGTTTCAATTCTCCC+CGG | - | chr3_1:77777696-77777715 | Msa0377350:intron | 45.0% | |
GGATCTCCCTGGAATTATTG+AGG | - | chr3_1:77778202-77778221 | Msa0377350:CDS | 45.0% | |
TGGCACCCTCAATAATTCCA+GGG | + | chr3_1:77778211-77778230 | None:intergenic | 45.0% | |
TTGGCACCCTCAATAATTCC+AGG | + | chr3_1:77778212-77778231 | None:intergenic | 45.0% | |
!! | TGGAATTATTGAGGGTGCCA+AGG | - | chr3_1:77778211-77778230 | Msa0377350:CDS | 45.0% |
!! | ATTATTGAGGGTGCCAAGGA+TGG | - | chr3_1:77778215-77778234 | Msa0377350:CDS | 45.0% |
AATTCTCGCTTCAGCTAGAG+CGG | + | chr3_1:77779149-77779168 | None:intergenic | 45.0% | |
TCAAGGCAACATCTTCGTCT+CGG | + | chr3_1:77779258-77779277 | None:intergenic | 45.0% | |
AAGTCTCATCCCACAAAGTG+GGG | + | chr3_1:77779583-77779602 | None:intergenic | 45.0% | |
CAAGTCTCATCCCACAAAGT+GGG | + | chr3_1:77779584-77779603 | None:intergenic | 45.0% | |
TAACCACCAACATATGTCGC+AGG | - | chr3_1:77780162-77780181 | Msa0377350:intron | 45.0% | |
GCATGCCAGAAAGTCAGTAA+CGG | + | chr3_1:77780261-77780280 | None:intergenic | 45.0% | |
TTCCTCCTGAAAGTCAGGTT+TGG | + | chr3_1:77780419-77780438 | None:intergenic | 45.0% | |
TTCAGGAGGAAAGAAAAGGG+TGG | - | chr3_1:77780428-77780447 | Msa0377350:intron | 45.0% | |
TCAGGAGGAAAGAAAAGGGT+GGG | - | chr3_1:77780429-77780448 | Msa0377350:intron | 45.0% | |
CTCGCTACATATAGCCTTCA+CGG | + | chr3_1:77780501-77780520 | None:intergenic | 45.0% | |
TCAGATCACACTTGAGGAAC+TGG | - | chr3_1:77780640-77780659 | Msa0377350:intron | 45.0% | |
ACTTGAGGAACTGGAGATCT+TGG | - | chr3_1:77780649-77780668 | Msa0377350:intron | 45.0% | |
!! | CCTCAGTCATTTTCCCCTTT+CGG | - | chr3_1:77780727-77780746 | Msa0377350:intron | 45.0% |
!! | CTCAGTCATTTTCCCCTTTC+GGG | - | chr3_1:77780728-77780747 | Msa0377350:intron | 45.0% |
! | GGCAATTAGTTTCTGGGCAT+GGG | + | chr3_1:77780959-77780978 | None:intergenic | 45.0% |
! | AGGCAATTAGTTTCTGGGCA+TGG | + | chr3_1:77780960-77780979 | None:intergenic | 45.0% |
TCTGTTATTCAGTGCACACC+TGG | - | chr3_1:77781101-77781120 | Msa0377350:CDS | 45.0% | |
CTTTATCCAGAAGCCCATCA+AGG | + | chr3_1:77781134-77781153 | None:intergenic | 45.0% | |
ATTACAGGGTCTTCGTAGTC+AGG | + | chr3_1:77781210-77781229 | None:intergenic | 45.0% | |
TTTCTGCGATCGCATTCACA+AGG | - | chr3_1:77781260-77781279 | Msa0377350:intron | 45.0% | |
TTGCACTGTCTGCATGAATG+AGG | - | chr3_1:77781367-77781386 | Msa0377350:intron | 45.0% | |
AATATATCCTCTCCTTGGGG+GGG | - | chr3_1:77781620-77781639 | Msa0377350:intron | 45.0% | |
!! | AGCTCAACTGGTTTGAGTTG+AGG | - | chr3_1:77781646-77781665 | Msa0377350:intron | 45.0% |
!! | GCTCAACTGGTTTGAGTTGA+GGG | - | chr3_1:77781647-77781666 | Msa0377350:intron | 45.0% |
!! | CTGGTTTGAGTTGAGGGTTA+AGG | - | chr3_1:77781653-77781672 | Msa0377350:intron | 45.0% |
! | TGAGTTGAGGGTTAAGGAGT+TGG | - | chr3_1:77781659-77781678 | Msa0377350:intron | 45.0% |
TTTGTCAAGTGCAGTAGGAG+AGG | + | chr3_1:77781788-77781807 | None:intergenic | 45.0% | |
TTCCAAATGATGCAGTGCTC+TGG | - | chr3_1:77781840-77781859 | Msa0377350:intron | 45.0% | |
AAACACAAGCCTCAGAGAGT+CGG | - | chr3_1:77781880-77781899 | Msa0377350:CDS | 45.0% | |
AGTATCTCATGCAGGGAATG+TGG | + | chr3_1:77782125-77782144 | None:intergenic | 45.0% | |
TTCCCTGCATGAGATACTAG+AGG | - | chr3_1:77782127-77782146 | Msa0377350:intron | 45.0% | |
CATCCTCTAGTATCTCATGC+AGG | + | chr3_1:77782133-77782152 | None:intergenic | 45.0% | |
CTCTTAGTAAGACTTTCCCC+AGG | - | chr3_1:77782172-77782191 | Msa0377350:intron | 45.0% | |
AAGACTTTCCCCAGGGTTAT+TGG | - | chr3_1:77782180-77782199 | Msa0377350:intron | 45.0% | |
CAGCACCACTCAACAACAAA+TGG | + | chr3_1:77782280-77782299 | None:intergenic | 45.0% | |
!!! | AATAGTATTATTTTTTTTTT+TGG | - | chr3_1:77776343-77776362 | Msa0377350:intron | 5.0% |
!!! | AATATTTTTATTTTTGTTTT+TGG | - | chr3_1:77777323-77777342 | Msa0377350:intron | 5.0% |
!! | AAATATATTCATTTATAATT+TGG | + | chr3_1:77777614-77777633 | None:intergenic | 5.0% |
!!! | TTTTAAATAAAAAATAATAG+TGG | + | chr3_1:77778025-77778044 | None:intergenic | 5.0% |
!!! | ATAATACATTATTTAATTTT+TGG | - | chr3_1:77778766-77778785 | Msa0377350:intron | 5.0% |
!! | ATAAATAAAAATAATTATCA+AGG | + | chr3_1:77780349-77780368 | None:intergenic | 5.0% |
GAAAACGAGAACGAGGACGA+AGG | + | chr3_1:77774715-77774734 | None:intergenic | 50.0% | |
AATGTTACGGGTTCAGAGCG+TGG | + | chr3_1:77774753-77774772 | None:intergenic | 50.0% | |
GAGCGGTGGTGAAATGTTAC+GGG | + | chr3_1:77774765-77774784 | None:intergenic | 50.0% | |
AACGAGAAGCTCGGAAGGAA+AGG | + | chr3_1:77774847-77774866 | None:intergenic | 50.0% | |
TGAAGAACGAGAAGCTCGGA+AGG | + | chr3_1:77774852-77774871 | None:intergenic | 50.0% | |
!!! | GTTTTGGCTTTGGTGGAGGT+TGG | - | chr3_1:77775470-77775489 | Msa0377350:intron | 50.0% |
GTTTAGCCTAGCACCAATGG+TGG | + | chr3_1:77775975-77775994 | None:intergenic | 50.0% | |
ACACCTACAACTAAGGGAGG+TGG | - | chr3_1:77776021-77776040 | Msa0377350:CDS | 50.0% | |
GAGTAGACTTGCCAACTGAC+GGG | + | chr3_1:77776110-77776129 | None:intergenic | 50.0% | |
TGCACTTCCTTGGGAACCAT+TGG | + | chr3_1:77776269-77776288 | None:intergenic | 50.0% | |
CCACGATATGTGATCACACC+TGG | + | chr3_1:77777248-77777267 | None:intergenic | 50.0% | |
CCAGGTGTGATCACATATCG+TGG | - | chr3_1:77777245-77777264 | Msa0377350:intron | 50.0% | |
!! | GAAACCTATTTGGGTTGGCC+TGG | - | chr3_1:77777634-77777653 | Msa0377350:intron | 50.0% |
! | ATTCTCCCCGGTGCCAATTT+CGG | - | chr3_1:77777708-77777727 | Msa0377350:intron | 50.0% |
CCAAACTAGCCCACCGAAAT+TGG | + | chr3_1:77777724-77777743 | None:intergenic | 50.0% | |
!! | CCAATTTCGGTGGGCTAGTT+TGG | - | chr3_1:77777721-77777740 | Msa0377350:intron | 50.0% |
TCCTCTTCCCTTTCCATCCT+TGG | + | chr3_1:77778231-77778250 | None:intergenic | 50.0% | |
AGGATGGAAAGGGAAGAGGA+AGG | - | chr3_1:77778231-77778250 | Msa0377350:intron | 50.0% | |
CTTCAGCTAGAGCGGTACAA+TGG | + | chr3_1:77779141-77779160 | None:intergenic | 50.0% | |
ACTGGAGATGTTGTGTGGGA+CGG | - | chr3_1:77779187-77779206 | Msa0377350:intron | 50.0% | |
CCAAGTCTCATCCCACAAAG+TGG | + | chr3_1:77779585-77779604 | None:intergenic | 50.0% | |
CCACTTTGTGGGATGAGACT+TGG | - | chr3_1:77779582-77779601 | Msa0377350:intron | 50.0% | |
GTCACCAATTATGTGGCTGC+TGG | - | chr3_1:77779621-77779640 | Msa0377350:intron | 50.0% | |
ATGGCCAGCAGCCACATAAT+TGG | + | chr3_1:77779628-77779647 | None:intergenic | 50.0% | |
AATTATGTGGCTGCTGGCCA+TGG | - | chr3_1:77779627-77779646 | Msa0377350:intron | 50.0% | |
ATTATGTGGCTGCTGGCCAT+GGG | - | chr3_1:77779628-77779647 | Msa0377350:intron | 50.0% | |
CACCAACATATGTCGCAGGT+GGG | - | chr3_1:77780166-77780185 | Msa0377350:intron | 50.0% | |
AGCCACCAAACCTGACTTTC+AGG | - | chr3_1:77780411-77780430 | Msa0377350:intron | 50.0% | |
CTCCTGAAAGTCAGGTTTGG+TGG | + | chr3_1:77780416-77780435 | None:intergenic | 50.0% | |
CACCAAACCTGACTTTCAGG+AGG | - | chr3_1:77780414-77780433 | Msa0377350:intron | 50.0% | |
TTCCTCATTACTGCCCTGTC+AGG | - | chr3_1:77780678-77780697 | Msa0377350:intron | 50.0% | |
TACCTGACAGGGCAGTAATG+AGG | + | chr3_1:77780683-77780702 | None:intergenic | 50.0% | |
CCGAAAGGGGAAAATGACTG+AGG | + | chr3_1:77780730-77780749 | None:intergenic | 50.0% | |
TATTCAGTGCACACCTGGAG+TGG | - | chr3_1:77781106-77781125 | Msa0377350:CDS | 50.0% | |
ACCTGGAGTGGAACCTTGAT+GGG | - | chr3_1:77781118-77781137 | Msa0377350:CDS | 50.0% | |
ATATATCCTCTCCTTGGGGG+GGG | - | chr3_1:77781621-77781640 | Msa0377350:intron | 50.0% | |
GTTGAGGGTTAAGGAGTTGG+AGG | - | chr3_1:77781662-77781681 | Msa0377350:intron | 50.0% | |
GTTAAGGAGTTGGAGGTCCA+GGG | - | chr3_1:77781669-77781688 | Msa0377350:intron | 50.0% | |
!! | GACCAGAGCACTGCATCATT+TGG | + | chr3_1:77781845-77781864 | None:intergenic | 50.0% |
AATGATGCAGTGCTCTGGTC+TGG | - | chr3_1:77781845-77781864 | Msa0377350:intron | 50.0% | |
ATGATGCAGTGCTCTGGTCT+GGG | - | chr3_1:77781846-77781865 | Msa0377350:intron | 50.0% | |
!! | CAGGGAATGTGGTCGGTTTT+TGG | + | chr3_1:77782114-77782133 | None:intergenic | 50.0% |
TCTCATGCAGGGAATGTGGT+CGG | + | chr3_1:77782121-77782140 | None:intergenic | 50.0% | |
AGCGTGATCCAATAACCCTG+GGG | + | chr3_1:77782191-77782210 | None:intergenic | 50.0% | |
GAGCGTGATCCAATAACCCT+GGG | + | chr3_1:77782192-77782211 | None:intergenic | 50.0% | |
! | GCTTGTCCACCATTGGTGCT+AGG | - | chr3_1:77775966-77775985 | Msa0377350:CDS | 55.0% |
CCTACAACTAAGGGAGGTGG+CGG | - | chr3_1:77776024-77776043 | Msa0377350:CDS | 55.0% | |
GATGCAAGAGTCGGTCTCGT+GGG | - | chr3_1:77776081-77776100 | Msa0377350:CDS | 55.0% | |
!! | ACCTATTTGGGTTGGCCTGG+TGG | - | chr3_1:77777637-77777656 | Msa0377350:intron | 55.0% |
ACCACCAGGCCAACCCAAAT+AGG | + | chr3_1:77777641-77777660 | None:intergenic | 55.0% | |
!! | GTGGTGTTGGCTTGAGACCT+TGG | - | chr3_1:77777656-77777675 | Msa0377350:intron | 55.0% |
! | CTTGAGAGGAGCACACTCCA+AGG | + | chr3_1:77777676-77777695 | None:intergenic | 55.0% |
CTTGGAGTGTGCTCCTCTCA+AGG | - | chr3_1:77777674-77777693 | Msa0377350:intron | 55.0% | |
TAGCCCACCGAAATTGGCAC+CGG | + | chr3_1:77777718-77777737 | None:intergenic | 55.0% | |
TGTCAGTTGCTGGATCTCCC+TGG | - | chr3_1:77778191-77778210 | Msa0377350:CDS | 55.0% | |
!! | TGAGGGTGCCAAGGATGGAA+AGG | - | chr3_1:77778220-77778239 | Msa0377350:CDS | 55.0% |
!! | GAGGGTGCCAAGGATGGAAA+GGG | - | chr3_1:77778221-77778240 | Msa0377350:CDS | 55.0% |
GCCAAGGATGGAAAGGGAAG+AGG | - | chr3_1:77778227-77778246 | Msa0377350:intron | 55.0% | |
TGGAAAGGGAAGAGGAAGGC+AGG | - | chr3_1:77778235-77778254 | Msa0377350:intron | 55.0% | |
TGTTGTGTGGGACGGAGTGT+TGG | - | chr3_1:77779195-77779214 | Msa0377350:intron | 55.0% | |
! | GTTGTGTGGGACGGAGTGTT+GGG | - | chr3_1:77779196-77779215 | Msa0377350:intron | 55.0% |
ACAAAGTGGGGTCGGCTACA+TGG | + | chr3_1:77779571-77779590 | None:intergenic | 55.0% | |
ATGTAGCCGACCCCACTTTG+TGG | - | chr3_1:77779570-77779589 | Msa0377350:intron | 55.0% | |
TGTAGCCGACCCCACTTTGT+GGG | - | chr3_1:77779571-77779590 | Msa0377350:intron | 55.0% | |
CTCATCCCACAAAGTGGGGT+CGG | + | chr3_1:77779579-77779598 | None:intergenic | 55.0% | |
CCACCTGCGACATATGTTGG+TGG | + | chr3_1:77780168-77780187 | None:intergenic | 55.0% | |
CCACCAACATATGTCGCAGG+TGG | - | chr3_1:77780165-77780184 | Msa0377350:intron | 55.0% | |
! | CAGGTGGGCCCAGATTTTCT+GGG | - | chr3_1:77780181-77780200 | Msa0377350:intron | 55.0% |
! | GTTTCTGGGCATGGGCATAG+AGG | + | chr3_1:77780951-77780970 | None:intergenic | 55.0% |
CACCTGGAGTGGAACCTTGA+TGG | - | chr3_1:77781117-77781136 | Msa0377350:CDS | 55.0% | |
!! | GTGGAACCTTGATGGGCTTC+TGG | - | chr3_1:77781125-77781144 | Msa0377350:CDS | 55.0% |
TATATCCTCTCCTTGGGGGG+GGG | - | chr3_1:77781622-77781641 | Msa0377350:intron | 55.0% | |
GGTTAAGGAGTTGGAGGTCC+AGG | - | chr3_1:77781668-77781687 | Msa0377350:intron | 55.0% | |
TGATGCAGTGCTCTGGTCTG+GGG | - | chr3_1:77781847-77781866 | Msa0377350:intron | 55.0% | |
!! | TCTACCTTGCCGACTCTCTG+AGG | + | chr3_1:77781892-77781911 | None:intergenic | 55.0% |
GGAGCGTGATCCAATAACCC+TGG | + | chr3_1:77782193-77782212 | None:intergenic | 55.0% | |
CCGCCACCTCCCTTAGTTGT+AGG | + | chr3_1:77776027-77776046 | None:intergenic | 60.0% | |
GGATGCAAGAGTCGGTCTCG+TGG | - | chr3_1:77776080-77776099 | Msa0377350:CDS | 60.0% | |
!! | TTGGGTTGGCCTGGTGGTGT+TGG | - | chr3_1:77777643-77777662 | Msa0377350:intron | 60.0% |
GGTCTCAAGCCAACACCACC+AGG | + | chr3_1:77777655-77777674 | None:intergenic | 60.0% | |
! | TCCCCGGTGCCAATTTCGGT+GGG | - | chr3_1:77777712-77777731 | Msa0377350:intron | 60.0% |
AGCCCACCGAAATTGGCACC+GGG | + | chr3_1:77777717-77777736 | None:intergenic | 60.0% | |
GGCCCACCTGCGACATATGT+TGG | + | chr3_1:77780171-77780190 | None:intergenic | 60.0% | |
! | GCAGGTGGGCCCAGATTTTC+TGG | - | chr3_1:77780180-77780199 | Msa0377350:intron | 60.0% |
!! | GGGCCCAGATTTTCTGGGAG+AGG | - | chr3_1:77780186-77780205 | Msa0377350:intron | 60.0% |
GCCCATCAAGGTTCCACTCC+AGG | + | chr3_1:77781122-77781141 | None:intergenic | 60.0% | |
GAGGTCCAGGGTTCAAGTCC+TGG | - | chr3_1:77781681-77781700 | Msa0377350:intron | 60.0% | |
CCTTGCCAGGACTTGAACCC+TGG | + | chr3_1:77781689-77781708 | None:intergenic | 60.0% | |
CCAGGGTTCAAGTCCTGGCA+AGG | - | chr3_1:77781686-77781705 | Msa0377350:intron | 60.0% | |
CAAGCCTCAGAGAGTCGGCA+AGG | - | chr3_1:77781885-77781904 | Msa0377350:intron | 60.0% | |
! | ACTAAGGGAGGTGGCGGTGC+TGG | - | chr3_1:77776030-77776049 | Msa0377350:CDS | 65.0% |
CTCGTGGGCTTCCCGTCAGT+TGG | - | chr3_1:77776096-77776115 | Msa0377350:CDS | 65.0% | |
! | CTCCCCGGTGCCAATTTCGG+TGG | - | chr3_1:77777711-77777730 | Msa0377350:intron | 65.0% |
GCCCACCGAAATTGGCACCG+GGG | + | chr3_1:77777716-77777735 | None:intergenic | 65.0% | |
AGTTGAGCTACCCCCCCCCA+AGG | + | chr3_1:77781635-77781654 | None:intergenic | 65.0% | |
TTGGGGGGGGGTAGCTCAAC+TGG | - | chr3_1:77781634-77781653 | Msa0377350:intron | 65.0% | |
!! | GGAGGTGGCGGTGCTGGTGA+AGG | - | chr3_1:77776036-77776055 | Msa0377350:CDS | 70.0% |
AGCTACCCCCCCCCAAGGAG+AGG | + | chr3_1:77781630-77781649 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 77774686 | 77782542 | 77774686 | ID=Msa0377350;Name=Msa0377350 |
chr3_1 | mRNA | 77774686 | 77782542 | 77774686 | ID=Msa0377350-mRNA-1;Parent=Msa0377350;Name=Msa0377350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=189|0.88|0.9|1|1|1|10|446|367 |
chr3_1 | exon | 77774686 | 77775182 | 77774686 | ID=Msa0377350-mRNA-1:exon:18620;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77775322 | 77775373 | 77775322 | ID=Msa0377350-mRNA-1:exon:18619;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77775927 | 77776115 | 77775927 | ID=Msa0377350-mRNA-1:exon:18618;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77776529 | 77776828 | 77776529 | ID=Msa0377350-mRNA-1:exon:18617;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77778134 | 77778243 | 77778134 | ID=Msa0377350-mRNA-1:exon:18616;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77778972 | 77779031 | 77778972 | ID=Msa0377350-mRNA-1:exon:18615;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77779948 | 77780019 | 77779948 | ID=Msa0377350-mRNA-1:exon:18614;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77781067 | 77781240 | 77781067 | ID=Msa0377350-mRNA-1:exon:18613;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77781849 | 77781902 | 77781849 | ID=Msa0377350-mRNA-1:exon:18612;Parent=Msa0377350-mRNA-1 |
chr3_1 | exon | 77782312 | 77782542 | 77782312 | ID=Msa0377350-mRNA-1:exon:18611;Parent=Msa0377350-mRNA-1 |
chr3_1 | five_prime_UTR | 77782354 | 77782542 | 77782354 | ID=Msa0377350-mRNA-1:five_prime_utr;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77782312 | 77782353 | 77782312 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77781849 | 77781902 | 77781849 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77781067 | 77781240 | 77781067 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77779948 | 77780019 | 77779948 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77778972 | 77779031 | 77778972 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77778134 | 77778243 | 77778134 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77776529 | 77776828 | 77776529 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77775927 | 77776115 | 77775927 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77775322 | 77775373 | 77775322 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | CDS | 77775132 | 77775182 | 77775132 | ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1 |
chr3_1 | three_prime_UTR | 77774686 | 77775131 | 77774686 | ID=Msa0377350-mRNA-1:three_prime_utr;Parent=Msa0377350-mRNA-1 |
Gene Sequence |
Protein sequence |