AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377350 MtrunA17_Chr3g0129261 99.185 368 2 1 1 367 1 368 0.0 744
Msa0377350 MtrunA17_Chr8g0343701 65.169 178 61 1 4 181 3 179 3.67e-71 220
Msa0377350 MtrunA17_Chr8g0343721 49.419 172 84 2 198 366 4 175 8.79e-54 176
Msa0377350 MtrunA17_Chr2g0286181 35.652 115 71 2 65 176 319 433 7.17e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377350 AT4G39520.1 90.515 369 33 2 1 367 1 369 0.0 676
Msa0377350 AT1G17470.1 56.284 366 156 3 4 366 3 367 4.12e-149 427
Msa0377350 AT1G17470.2 56.284 366 156 3 4 366 3 367 4.12e-149 427
Msa0377350 AT1G72660.2 55.464 366 159 3 4 366 3 367 4.92e-147 422
Msa0377350 AT1G72660.3 55.464 366 159 3 4 366 3 367 4.92e-147 422
Msa0377350 AT1G72660.1 55.464 366 159 3 4 366 3 367 4.92e-147 422
Msa0377350 AT1G72660.4 52.797 286 132 2 84 366 2 287 1.96e-108 320
Msa0377350 AT5G18570.1 27.513 189 114 4 65 230 379 567 2.41e-13 71.6

Find 144 sgRNAs with CRISPR-Local

Find 508 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATGCAGATATTACTTTA+AGG 0.195713 3_1:-77776675 Msa0377350:CDS
CATGTCTCTAACAGAGTAAT+TGG 0.209705 3_1:-77774863 Msa0377350:three_prime_UTR
ATAAGACGCTTATGAGTTAT+TGG 0.217930 3_1:+77778164 None:intergenic
AAGACTTTCCCCAGGGTTAT+TGG 0.227823 3_1:-77775026 Msa0377350:three_prime_UTR
TCCTCTTCCCTTTCCATCCT+TGG 0.232626 3_1:+77778978 None:intergenic
CTGAATAAGAAACAAGTAAT+TGG 0.255290 3_1:+77774995 None:intergenic
AGCCACCAAACCTGACTTTC+AGG 0.267365 3_1:-77776795 Msa0377350:CDS
TTCTTAGATGACAATATTAC+AGG 0.277031 3_1:+77775984 None:intergenic
AATGATGCAGTGCTCTGGTC+TGG 0.288648 3_1:-77775361 Msa0377350:intron
ATGGGCTTCTGGATAAAGTT+TGG 0.291273 3_1:-77776070 Msa0377350:CDS
GTGGAACCTTGATGGGCTTC+TGG 0.293542 3_1:-77776081 Msa0377350:CDS
AAGGCTACTGCTCATCATTT+GGG 0.300257 3_1:-77781859 Msa0377350:CDS
GTTCGTTCTAGTTGGATATT+CGG 0.303262 3_1:-77774785 Msa0377350:three_prime_UTR
CAAGGCTACTGCTCATCATT+TGG 0.308308 3_1:-77781860 Msa0377350:CDS
AAATAGATTAGGTTTACTTC+TGG 0.311514 3_1:+77782386 None:intergenic
TTCGTTCTAGTTGGATATTC+GGG 0.320406 3_1:-77774784 Msa0377350:three_prime_UTR
TAGTCAGGATTCATACCTTT+AGG 0.323820 3_1:+77776014 None:intergenic
ACTACACTAACTTGCATTCC+AGG 0.339401 3_1:-77779979 Msa0377350:CDS
AACATTTCACCACCGCTCTT+AGG 0.349084 3_1:-77782439 Msa0377350:five_prime_UTR
GTGAAATATACAAAATTTGA+TGG 0.349683 3_1:-77774961 Msa0377350:three_prime_UTR
TTGTAAAGATTACAATTTGC+TGG 0.351463 3_1:-77774830 Msa0377350:three_prime_UTR
TGCTTAACCGTCTTAATCTC+TGG 0.371104 3_1:-77774693 Msa0377350:three_prime_UTR
TTCCTCCTGAAAGTCAGGTT+TGG 0.374686 3_1:+77776790 None:intergenic
TTTCTTTCCTCCTGAAAGTC+AGG 0.381939 3_1:+77776785 None:intergenic
CTCCTGAAAGTCAGGTTTGG+TGG 0.386899 3_1:+77776793 None:intergenic
ATGATGCAGTGCTCTGGTCT+GGG 0.389872 3_1:-77775360 Msa0377350:intron
TGGAAAGGGAAGAGGAAGGC+AGG 0.392906 3_1:-77778971 Msa0377350:intron
AATGAAATTACGCATCAGTT+TGG 0.395899 3_1:-77774739 Msa0377350:three_prime_UTR
ATTACAGGGTCTTCGTAGTC+AGG 0.396058 3_1:+77775999 None:intergenic
TGGGCTTCTGGATAAAGTTT+GGG 0.396911 3_1:-77776069 Msa0377350:CDS
TACTTGTTTCTTATTCAGAT+AGG 0.399264 3_1:-77774990 Msa0377350:three_prime_UTR
TCAGATCACACTTGAGGAAC+TGG 0.403962 3_1:-77776566 Msa0377350:CDS
TTGGCACCCTCAATAATTCC+AGG 0.407131 3_1:+77778997 None:intergenic
ATGTCTCTAACAGAGTAATT+GGG 0.408223 3_1:-77774862 Msa0377350:three_prime_UTR
GGAGAGAAGCGAAGTAAGAT+TGG 0.409396 3_1:+77782407 None:intergenic
TCACGGTATCAAGATCTAGA+TGG 0.410734 3_1:+77776725 None:intergenic
ACTCCTTACACCTACAACTA+AGG 0.413818 3_1:-77781192 Msa0377350:CDS
CCGCCACCTCCCTTAGTTGT+AGG 0.416550 3_1:+77781182 None:intergenic
CACCTGGAGTGGAACCTTGA+TGG 0.417281 3_1:-77776089 Msa0377350:CDS
GAAGGAAAGGAAAATAGATT+AGG 0.417558 3_1:+77782375 None:intergenic
ACTTGAGGAACTGGAGATCT+TGG 0.417927 3_1:-77776557 Msa0377350:CDS
ACCTGGAGTGGAACCTTGAT+GGG 0.417928 3_1:-77776088 Msa0377350:CDS
TGCCCTCAATGACATCTATA+AGG 0.420928 3_1:+77776632 None:intergenic
CTAGAACAAATATGCAGAAA+TGG 0.426139 3_1:+77782519 None:intergenic
AGCTAGAAGGATTTGGCATA+AGG 0.430372 3_1:-77778133 Msa0377350:intron
TTCTTATTCAGATAGGGATT+AGG 0.432512 3_1:-77774983 Msa0377350:three_prime_UTR
CTCGCTACATATAGCCTTCA+CGG 0.438245 3_1:+77776708 None:intergenic
TTCCTCATTACTGCCCTGTC+AGG 0.441209 3_1:-77776528 Msa0377350:intron
CTCCCTTAGTTGTAGGTGTA+AGG 0.443291 3_1:+77781189 None:intergenic
TTCCAAATGATGCAGTGCTC+TGG 0.443660 3_1:-77775366 Msa0377350:intron
CTGTGATTGTTCGTTCTAGT+TGG 0.444785 3_1:-77774793 Msa0377350:three_prime_UTR
AGAGCGGTGGTGAAATGTTA+CGG 0.454944 3_1:+77782443 None:intergenic
GCCCATCAAGGTTCCACTCC+AGG 0.455391 3_1:+77776087 None:intergenic
GACTTTCAGGAGGAAAGAAA+AGG 0.462402 3_1:-77776782 Msa0377350:CDS
GAGCGGTGGTGAAATGTTAC+GGG 0.465043 3_1:+77782444 None:intergenic
ACTAAGGGAGGTGGCGGTGC+TGG 0.471973 3_1:-77781176 Msa0377350:CDS
GATCTCCCTGGAATTATTGA+GGG 0.477457 3_1:-77779003 Msa0377350:CDS
CAGCACCACTCAACAACAAA+TGG 0.479475 3_1:+77774929 None:intergenic
TGTCAGTTGCTGGATCTCCC+TGG 0.485451 3_1:-77779015 Msa0377350:intron
CTTGTTCACAACATAGATGC+AGG 0.490496 3_1:+77776594 None:intergenic
AGCTTCTCGTTCTTCAACAA+TGG 0.492679 3_1:-77782350 Msa0377350:exon
ACTTGTTTCTTATTCAGATA+GGG 0.493076 3_1:-77774989 Msa0377350:three_prime_UTR
CGTATTTATACTAAACCTAA+AGG 0.494629 3_1:-77776029 Msa0377350:CDS
GGAGGTGGCGGTGCTGGTGA+AGG 0.497652 3_1:-77781170 Msa0377350:CDS
GGATCTCCCTGGAATTATTG+AGG 0.497825 3_1:-77779004 Msa0377350:CDS
ACTCTGCTGAATAAATTGAC+TGG 0.498625 3_1:-77781080 Msa0377350:CDS
CTCGTGGGCTTCCCGTCAGT+TGG 0.504184 3_1:-77781110 Msa0377350:CDS
CTCTTAGTAAGACTTTCCCC+AGG 0.506029 3_1:-77775034 Msa0377350:three_prime_UTR
AACGAGAAGCTCGGAAGGAA+AGG 0.506257 3_1:+77782362 None:intergenic
CTCTGCTGAATAAATTGACT+GGG 0.511261 3_1:-77781079 Msa0377350:CDS
AGTTAGTGTAGTGAACTCAT+AGG 0.513041 3_1:+77779990 None:intergenic
TTGGAAATGATGCGTCTTGT+GGG 0.515428 3_1:-77774892 Msa0377350:three_prime_UTR
CATCCTCTAGTATCTCATGC+AGG 0.523981 3_1:+77775076 None:intergenic
ATTATTGAGGGTGCCAAGGA+TGG 0.524161 3_1:-77778991 Msa0377350:CDS
GCCAAGGATGGAAAGGGAAG+AGG 0.527508 3_1:-77778979 Msa0377350:CDS
CCACGATATGTGATCACACC+TGG 0.532149 3_1:+77779961 None:intergenic
CTTTATCCAGAAGCCCATCA+AGG 0.533921 3_1:+77776075 None:intergenic
TCTGTTATTCAGTGCACACC+TGG 0.544525 3_1:-77776105 Msa0377350:intron
TGGAATTATTGAGGGTGCCA+AGG 0.547326 3_1:-77778995 Msa0377350:CDS
TGAGGGTGCCAAGGATGGAA+AGG 0.549980 3_1:-77778986 Msa0377350:CDS
CACGGTATCAAGATCTAGAT+GGG 0.550347 3_1:+77776726 None:intergenic
GATGCAAGAGTCGGTCTCGT+GGG 0.558118 3_1:-77781125 Msa0377350:CDS
CTCCTTACACCTACAACTAA+GGG 0.561218 3_1:-77781191 Msa0377350:CDS
GGATGCAAGAGTCGGTCTCG+TGG 0.561453 3_1:-77781126 Msa0377350:CDS
GAGCGTGATCCAATAACCCT+GGG 0.562797 3_1:+77775017 None:intergenic
GAGGGTGCCAAGGATGGAAA+GGG 0.568429 3_1:-77778985 Msa0377350:CDS
GAGTAGACTTGCCAACTGAC+GGG 0.569689 3_1:+77781099 None:intergenic
GACCTTATAGATGTCATTGA+GGG 0.569803 3_1:-77776634 Msa0377350:CDS
TCATCATTTGGGGTTACTGA+AGG 0.570485 3_1:-77781848 Msa0377350:intron
AGAGTAGACTTGCCAACTGA+CGG 0.570529 3_1:+77781098 None:intergenic
TTTGGAAATGATGCGTCTTG+TGG 0.570637 3_1:-77774893 Msa0377350:three_prime_UTR
TGAAATATACAAAATTTGAT+GGG 0.571498 3_1:-77774960 Msa0377350:three_prime_UTR
TGATGCAGTGCTCTGGTCTG+GGG 0.575620 3_1:-77775359 Msa0377350:intron
ATATTCGGGTATGCATATGC+TGG 0.577435 3_1:-77774770 Msa0377350:three_prime_UTR
TGAAGAACGAGAAGCTCGGA+AGG 0.582779 3_1:+77782357 None:intergenic
GGAGCGTGATCCAATAACCC+TGG 0.583757 3_1:+77775016 None:intergenic
CTAAACTTGCAAAACTGAGG+AGG 0.585745 3_1:-77781217 Msa0377350:CDS
GGTTACAAGAATTACCTGAC+AGG 0.586053 3_1:+77776514 None:intergenic
TTAAACCATTTGTTGTTGAG+TGG 0.588013 3_1:-77774934 Msa0377350:three_prime_UTR
ATCCTCTAGTATCTCATGCA+GGG 0.588051 3_1:+77775077 None:intergenic
TACCTGACAGGGCAGTAATG+AGG 0.589669 3_1:+77776526 None:intergenic
ACTTTCAGGAGGAAAGAAAA+GGG 0.590692 3_1:-77776781 Msa0377350:CDS
TCAGGAGGAAAGAAAAGGGT+GGG 0.592993 3_1:-77776777 Msa0377350:CDS
TGACCTTATAGATGTCATTG+AGG 0.593679 3_1:-77776635 Msa0377350:CDS
AATCAAAGACATCGAAGATG+AGG 0.596340 3_1:-77782311 Msa0377350:intron
ATCTATAAGGTCATCTGCAG+TGG 0.597376 3_1:+77776645 None:intergenic
TATTCAGTGCACACCTGGAG+TGG 0.599235 3_1:-77776100 Msa0377350:intron
AGTATCTCATGCAGGGAATG+TGG 0.603443 3_1:+77775084 None:intergenic
TTTCTGCGATCGCATTCACA+AGG 0.607440 3_1:-77775946 Msa0377350:CDS
TAAACTTGCAAAACTGAGGA+GGG 0.608244 3_1:-77781216 Msa0377350:CDS
AGGCTACTGCTCATCATTTG+GGG 0.608492 3_1:-77781858 Msa0377350:CDS
TCGTTCTTCAACAATGGCGA+CGG 0.609637 3_1:-77782344 Msa0377350:exon
TGTCTCTAACAGAGTAATTG+GGG 0.610546 3_1:-77774861 Msa0377350:three_prime_UTR
TCTTAGTAAGACTTTCCCCA+GGG 0.611564 3_1:-77775033 Msa0377350:three_prime_UTR
GAAAACGAGAACGAGGACGA+AGG 0.614494 3_1:+77782494 None:intergenic
TCTTAGATGACAATATTACA+GGG 0.622650 3_1:+77775985 None:intergenic
ACACCTACAACTAAGGGAGG+TGG 0.623374 3_1:-77781185 Msa0377350:CDS
CAAGCCTCAGAGAGTCGGCA+AGG 0.623563 3_1:-77775321 Msa0377350:intron
AAACACAAGCCTCAGAGAGT+CGG 0.626180 3_1:-77775326 Msa0377350:CDS
AATGTTACGGGTTCAGAGCG+TGG 0.629311 3_1:+77782456 None:intergenic
TCTCATGCAGGGAATGTGGT+CGG 0.637938 3_1:+77775088 None:intergenic
GATTGATCAGATCACACTTG+AGG 0.641269 3_1:-77776572 Msa0377350:CDS
CCAGGTGTGATCACATATCG+TGG 0.641756 3_1:-77779961 Msa0377350:CDS
TGGCACCCTCAATAATTCCA+GGG 0.644735 3_1:+77778998 None:intergenic
AAAAGTGGGGATGCAAGAGT+CGG 0.647820 3_1:-77781134 Msa0377350:CDS
CACAGGTTATTAGTACTGCA+AGG 0.648199 3_1:-77778226 Msa0377350:intron
TTGTTGAAGAACGAGAAGCT+CGG 0.650052 3_1:+77782353 None:intergenic
TCTAGATCTTGATACCGTGA+AGG 0.652544 3_1:-77776722 Msa0377350:CDS
TTCAGGAGGAAAGAAAAGGG+TGG 0.654637 3_1:-77776778 Msa0377350:CDS
TCTACCTTGCCGACTCTCTG+AGG 0.654923 3_1:+77775317 None:intergenic
CCTACAACTAAGGGAGGTGG+CGG 0.656986 3_1:-77781182 Msa0377350:CDS
AGGCTAAACTTGCAAAACTG+AGG 0.657417 3_1:-77781220 Msa0377350:CDS
TTGTTCACAACATAGATGCA+GGG 0.658113 3_1:+77776595 None:intergenic
TTCCCTGCATGAGATACTAG+AGG 0.664860 3_1:-77775079 Msa0377350:three_prime_UTR
GGCGAAAACTCAAAAGAACA+AGG 0.674392 3_1:-77781878 Msa0377350:CDS
CACCAAACCTGACTTTCAGG+AGG 0.677415 3_1:-77776792 Msa0377350:CDS
AGTTTGAAACCTAAGAGCGG+TGG 0.678667 3_1:+77782430 None:intergenic
TTATGATCCAGAGATTAAGA+CGG 0.681609 3_1:+77774686 None:intergenic
TGTAGAAGAAAACGAGAACG+AGG 0.692233 3_1:+77782487 None:intergenic
AGGATGGAAAGGGAAGAGGA+AGG 0.692562 3_1:-77778975 Msa0377350:CDS
GTTACAAGAATTACCTGACA+GGG 0.705478 3_1:+77776515 None:intergenic
CTTACACCTACAACTAAGGG+AGG 0.707070 3_1:-77781188 Msa0377350:CDS
TGGAGTTTGAAACCTAAGAG+CGG 0.715356 3_1:+77782427 None:intergenic
AGCGTGATCCAATAACCCTG+GGG 0.773624 3_1:+77775018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATTTTATTTTTT+TGG - chr3_1:77780359-77780378 Msa0377350:intron 0.0%
!!! GTATATTTTAATAAAATTGA+TGG - chr3_1:77775059-77775078 Msa0377350:three_prime_UTR 10.0%
!!! ATTTAAGTTATATTCAAATT+TGG - chr3_1:77778146-77778165 Msa0377350:CDS 10.0%
!!! TTTAAGTTATATTCAAATTT+GGG - chr3_1:77778147-77778166 Msa0377350:CDS 10.0%
!! AAAGAATACATTAATTTAAA+AGG + chr3_1:77780980-77780999 None:intergenic 10.0%
!!! TATATTGGTTTTTTTAATAT+TGG + chr3_1:77781722-77781741 None:intergenic 10.0%
!!! GATATTTTTATTTTTTTGAA+TGG + chr3_1:77781766-77781785 None:intergenic 10.0%
!!! TATTATTTTGTGTATAATTG+CGG - chr3_1:77775287-77775306 Msa0377350:intron 15.0%
!!! ATGTTAGTTTGATTATTAAA+TGG - chr3_1:77775386-77775405 Msa0377350:intron 15.0%
!! ATTAATGTGATTGTATATAT+TGG - chr3_1:77775563-77775582 Msa0377350:intron 15.0%
!! ATTCTAATATACAATATTGA+AGG - chr3_1:77775892-77775911 Msa0377350:intron 15.0%
!! AAAATCTTAATTATATCTTC+AGG + chr3_1:77776701-77776720 None:intergenic 15.0%
!!! AATATATTTGAAACCTATTT+GGG - chr3_1:77777625-77777644 Msa0377350:intron 15.0%
!! AATATAATTTATGCATTGAA+CGG - chr3_1:77777949-77777968 Msa0377350:intron 15.0%
!! TATTATGTTTAGAGAAAATA+TGG - chr3_1:77778727-77778746 Msa0377350:intron 15.0%
!! ATTATGTTTAGAGAAAATAT+GGG - chr3_1:77778728-77778747 Msa0377350:intron 15.0%
!! TGAAATATACAAAATTTGAT+GGG - chr3_1:77782246-77782265 Msa0377350:intron 15.0%
!! TTCTATTATGATTGAATCAT+AGG - chr3_1:77774959-77774978 Msa0377350:three_prime_UTR 20.0%
!! TCTATTATGATTGAATCATA+GGG - chr3_1:77774960-77774979 Msa0377350:three_prime_UTR 20.0%
!!! ATTGTATATATTGGTTAGAT+TGG - chr3_1:77775572-77775591 Msa0377350:intron 20.0%
!! ATACCTAAACTTTAAACATA+GGG + chr3_1:77775751-77775770 None:intergenic 20.0%
!! TATACCTAAACTTTAAACAT+AGG + chr3_1:77775752-77775771 None:intergenic 20.0%
!! TAAAGAATATAAGATTCCAT+AGG + chr3_1:77775807-77775826 None:intergenic 20.0%
!!! TTGTTTGTTTGTTTTACTTT+TGG - chr3_1:77776231-77776250 Msa0377350:intron 20.0%
!! TCAAATTAATACAATTCTAC+TGG + chr3_1:77776509-77776528 None:intergenic 20.0%
!! ATTTGATGTAAATGATATGT+CGG - chr3_1:77776523-77776542 Msa0377350:intron 20.0%
!! GAAATAAATCTCAATATGTA+AGG - chr3_1:77776625-77776644 Msa0377350:CDS 20.0%
!! ACAAATAAGTAAAATGATAG+TGG + chr3_1:77776822-77776841 None:intergenic 20.0%
!!! TTTTTTCCTTCTTTTTGAAA+TGG - chr3_1:77777025-77777044 Msa0377350:intron 20.0%
!!! TTTTTCCTTCTTTTTGAAAT+GGG - chr3_1:77777026-77777045 Msa0377350:intron 20.0%
!!! TCTGAAAAGTTTACTTATTT+TGG - chr3_1:77777179-77777198 Msa0377350:intron 20.0%
!!! TTATTTTTGTTTTTGGTTTG+AGG - chr3_1:77777330-77777349 Msa0377350:intron 20.0%
!!! GAATATATTTGAAACCTATT+TGG - chr3_1:77777624-77777643 Msa0377350:intron 20.0%
!! ACAACAATTATAGTAATAAG+TGG + chr3_1:77779657-77779676 None:intergenic 20.0%
!!! TGGTTGATATAGAAATAAAA+CGG + chr3_1:77779986-77780005 None:intergenic 20.0%
!! ATAATGCAGATATTACTTTA+AGG - chr3_1:77780531-77780550 Msa0377350:intron 20.0%
!! TTTATACATCCTTATGTAAA+AGG - chr3_1:77780771-77780790 Msa0377350:intron 20.0%
!! TTATACATCCTTATGTAAAA+GGG - chr3_1:77780772-77780791 Msa0377350:intron 20.0%
!!! TTTTGTTTATCTTAGTTTTG+AGG - chr3_1:77780807-77780826 Msa0377350:intron 20.0%
!!! TTTGTTTATCTTAGTTTTGA+GGG - chr3_1:77780808-77780827 Msa0377350:intron 20.0%
!!! TTGTTGAGAGAATTTTTTTT+GGG - chr3_1:77781050-77781069 Msa0377350:intron 20.0%
!!! ATCATAAGATATTTAGTTCT+GGG + chr3_1:77781321-77781340 None:intergenic 20.0%
!!! AATCATAAGATATTTAGTTC+TGG + chr3_1:77781322-77781341 None:intergenic 20.0%
!! TAAACTTTATATACTTAGAG+TGG - chr3_1:77781522-77781541 Msa0377350:intron 20.0%
!! TTAGTGGTTAATTGTTATAT+TGG + chr3_1:77781737-77781756 None:intergenic 20.0%
!!! TACGCAATTATCTTTATTTT+CGG - chr3_1:77781923-77781942 Msa0377350:intron 20.0%
!! GTGAAATATACAAAATTTGA+TGG - chr3_1:77782245-77782264 Msa0377350:intron 20.0%
! AAATAGATTAGGTTTACTTC+TGG + chr3_1:77774823-77774842 None:intergenic 25.0%
! AATCATATTTGCATGTGTAT+AGG - chr3_1:77775128-77775147 Msa0377350:exon 25.0%
!!! ATCAGTTATTTTCTGTGTTT+CGG - chr3_1:77775173-77775192 Msa0377350:intron 25.0%
! TGATTATTAAATGGCATACA+AGG - chr3_1:77775395-77775414 Msa0377350:intron 25.0%
!!! TTAGATTGGATAGTTGTTTT+AGG - chr3_1:77775586-77775605 Msa0377350:intron 25.0%
!!! TAGATTGGATAGTTGTTTTA+GGG - chr3_1:77775587-77775606 Msa0377350:intron 25.0%
! AATAAGAATCCCTGAATATA+TGG + chr3_1:77775697-77775716 None:intergenic 25.0%
! AATATAAGATTCCATAGGTT+CGG + chr3_1:77775802-77775821 None:intergenic 25.0%
!!! TTATCTTTTTTTTCACCTTC+TGG - chr3_1:77775824-77775843 Msa0377350:intron 25.0%
! AAATCAGTACTGTAATAGAA+AGG + chr3_1:77775870-77775889 None:intergenic 25.0%
!!! GTTTTGATGTTACTAAAAGT+GGG - chr3_1:77776058-77776077 Msa0377350:CDS 25.0%
!! TTTTGATGTTACTAAAAGTG+GGG - chr3_1:77776059-77776078 Msa0377350:CDS 25.0%
! TCTTCCTTCAATTATACTAT+AGG - chr3_1:77776196-77776215 Msa0377350:intron 25.0%
! CAAACAAACAAATTCAAGAT+CGG + chr3_1:77776222-77776241 None:intergenic 25.0%
!!! TTTTCTTGTTTCTTGTTGAA+AGG + chr3_1:77776293-77776312 None:intergenic 25.0%
! TGGATTCTAATTCATTTCAA+AGG - chr3_1:77776363-77776382 Msa0377350:intron 25.0%
! AGTGTTTAATGTATAGAACA+AGG - chr3_1:77776469-77776488 Msa0377350:intron 25.0%
! GTGTTTAATGTATAGAACAA+GGG - chr3_1:77776470-77776489 Msa0377350:intron 25.0%
! TTTGATGTAAATGATATGTC+GGG - chr3_1:77776524-77776543 Msa0377350:intron 25.0%
!! AATAATTTAAAACATCCCTC+AGG + chr3_1:77776669-77776688 None:intergenic 25.0%
! TCTTAATTATATCTTCAGGT+TGG + chr3_1:77776697-77776716 None:intergenic 25.0%
! TATGAACAGGATAGAATAAA+AGG + chr3_1:77776889-77776908 None:intergenic 25.0%
! AAAAAATAGTGCATTTGAGA+TGG + chr3_1:77777010-77777029 None:intergenic 25.0%
!! ATTTTCCCATTTCAAAAAGA+AGG + chr3_1:77777034-77777053 None:intergenic 25.0%
!!! TCAGACAAATTTTTTAACAC+AGG + chr3_1:77777164-77777183 None:intergenic 25.0%
!!! GTTTACTTATTTTGGTTTGT+AGG - chr3_1:77777187-77777206 Msa0377350:intron 25.0%
! GTACAACTAAATTTAGTTGT+AGG + chr3_1:77777367-77777386 None:intergenic 25.0%
!!! TGAAGTTTTATTTGATTGCA+CGG - chr3_1:77777772-77777791 Msa0377350:intron 25.0%
! AATAGAAACAAGTCTAGATT+GGG + chr3_1:77777853-77777872 None:intergenic 25.0%
!!! CTTGTTTCTATTGTCAAATT+AGG - chr3_1:77777861-77777880 Msa0377350:intron 25.0%
! AACTTCAAATAGGCAAAATA+TGG + chr3_1:77777889-77777908 None:intergenic 25.0%
! TATTATCAAATGGACAAACT+TGG + chr3_1:77778324-77778343 None:intergenic 25.0%
! ACATAATATTAATCTCACCT+CGG + chr3_1:77778715-77778734 None:intergenic 25.0%
! AGTAAACATTAAACACATGA+TGG + chr3_1:77778804-77778823 None:intergenic 25.0%
! AAAGTTGTCATTACAAATCA+AGG + chr3_1:77778838-77778857 None:intergenic 25.0%
! CTGCAAATAAAATATTCTGT+AGG + chr3_1:77778870-77778889 None:intergenic 25.0%
! AAAAACATTAGAGAGATAGT+TGG - chr3_1:77779310-77779329 Msa0377350:intron 25.0%
! AAAACATTAGAGAGATAGTT+GGG - chr3_1:77779311-77779330 Msa0377350:intron 25.0%
!! GTTTCTCTTATAGTTTTTCT+TGG + chr3_1:77779473-77779492 None:intergenic 25.0%
! AAATCTAGAGATTAATCAGT+TGG - chr3_1:77779502-77779521 Msa0377350:intron 25.0%
! TAACCTATAGTTAAATGAGT+TGG - chr3_1:77779690-77779709 Msa0377350:intron 25.0%
! ATGATGAATGAAGTTTGTAT+CGG - chr3_1:77779755-77779774 Msa0377350:intron 25.0%
! ATAAACCTGTATAATAAGCA+AGG - chr3_1:77780120-77780139 Msa0377350:intron 25.0%
!!! TTGGATTTATTTTCTACTTC+AGG - chr3_1:77780378-77780397 Msa0377350:intron 25.0%
! GTTAAATTAAAGGAACCAAA+TGG + chr3_1:77780862-77780881 None:intergenic 25.0%
! AGCAACTACAGTTAAATTAA+AGG + chr3_1:77780872-77780891 None:intergenic 25.0%
! TTAATTTAACTGTAGTTGCT+TGG - chr3_1:77780872-77780891 Msa0377350:intron 25.0%
!! TTAAAAGGCAATTAGTTTCT+GGG + chr3_1:77780965-77780984 None:intergenic 25.0%
!! TTTAAAAGGCAATTAGTTTC+TGG + chr3_1:77780966-77780985 None:intergenic 25.0%
!!! CTTGTTGAGAGAATTTTTTT+TGG - chr3_1:77781049-77781068 Msa0377350:intron 25.0%
! CGTATTTATACTAAACCTAA+AGG - chr3_1:77781177-77781196 Msa0377350:CDS 25.0%
! TCTTAGATGACAATATTACA+GGG + chr3_1:77781224-77781243 None:intergenic 25.0%
! TTCTTAGATGACAATATTAC+AGG + chr3_1:77781225-77781244 None:intergenic 25.0%
! GACAACAGCATATTAATAAA+AGG + chr3_1:77781463-77781482 None:intergenic 25.0%
! ATTAATATGCTGTTGTCATT+AGG - chr3_1:77781466-77781485 Msa0377350:intron 25.0%
! AATTAATATATCCTCTCCTT+GGG - chr3_1:77781616-77781635 Msa0377350:intron 25.0%
! CTGAATAAGAAACAAGTAAT+TGG + chr3_1:77782214-77782233 None:intergenic 25.0%
!! TACTTGTTTCTTATTCAGAT+AGG - chr3_1:77782216-77782235 Msa0377350:intron 25.0%
!! ACTTGTTTCTTATTCAGATA+GGG - chr3_1:77782217-77782236 Msa0377350:intron 25.0%
! TTGTAAAGATTACAATTTGC+TGG - chr3_1:77782376-77782395 Msa0377350:five_prime_UTR 25.0%
CTAGAACAAATATGCAGAAA+TGG + chr3_1:77774690-77774709 None:intergenic 30.0%
GAAGGAAAGGAAAATAGATT+AGG + chr3_1:77774834-77774853 None:intergenic 30.0%
!! TCAGTTATTTTCTGTGTTTC+GGG - chr3_1:77775174-77775193 Msa0377350:intron 30.0%
CATATCATCAATTGCTTTGA+CGG + chr3_1:77775217-77775236 None:intergenic 30.0%
!!! CGGTTATTGTTTTTTACAGA+TGG - chr3_1:77775307-77775326 Msa0377350:intron 30.0%
! CATATATATGACCAGTGTTT+TGG - chr3_1:77775435-77775454 Msa0377350:intron 30.0%
!!! GAAGTTTTATTTGTAAGCAC+AGG - chr3_1:77775638-77775657 Msa0377350:intron 30.0%
AAACTTTAAACATAGGGAGA+GGG + chr3_1:77775745-77775764 None:intergenic 30.0%
TAAACTTTAAACATAGGGAG+AGG + chr3_1:77775746-77775765 None:intergenic 30.0%
! TCTCCCTATGTTTAAAGTTT+AGG - chr3_1:77775745-77775764 Msa0377350:intron 30.0%
!! GGTTTTGATGTTACTAAAAG+TGG - chr3_1:77776057-77776076 Msa0377350:CDS 30.0%
TTGGAGTGATTATTATCCAA+TGG - chr3_1:77776250-77776269 Msa0377350:intron 30.0%
TATTTGAAAATAGCAGTGCA+AGG + chr3_1:77776327-77776346 None:intergenic 30.0%
AAATAAAGTGATTGTGTACG+AGG - chr3_1:77776420-77776439 Msa0377350:intron 30.0%
!! GGTTTTTCAACAAAAAGACA+AGG - chr3_1:77776545-77776564 Msa0377350:CDS 30.0%
! GTCTAGAATTAGCTTCAAAA+AGG + chr3_1:77776584-77776603 None:intergenic 30.0%
TGTTTGACTGATCATACAAT+GGG - chr3_1:77776859-77776878 Msa0377350:intron 30.0%
ACATGAGGAATAATATGAAC+AGG + chr3_1:77776902-77776921 None:intergenic 30.0%
ACTCAAATAATGCATCAGAT+AGG + chr3_1:77776928-77776947 None:intergenic 30.0%
GATTGCTTTCTCTTTGTATT+GGG - chr3_1:77777099-77777118 Msa0377350:intron 30.0%
TTTCTCTTTGTATTGGGTTT+GGG - chr3_1:77777105-77777124 Msa0377350:intron 30.0%
! TTTTAACACAGGCTAAAACT+TGG + chr3_1:77777153-77777172 None:intergenic 30.0%
TTGAATTTCATGTCGTTGTA+AGG + chr3_1:77777305-77777324 None:intergenic 30.0%
GTCAAAAGCTATTTGTATAG+AGG + chr3_1:77777438-77777457 None:intergenic 30.0%
!!! GTTTCCAAGGATCTTTTTTT+TGG - chr3_1:77777479-77777498 Msa0377350:intron 30.0%
ATGTCCAAAAAAAAGATCCT+TGG + chr3_1:77777486-77777505 None:intergenic 30.0%
!!! AGGATCTTTTTTTTGGACAT+TGG - chr3_1:77777486-77777505 Msa0377350:intron 30.0%
! TATTTGAAACCTATTTGGGT+TGG - chr3_1:77777629-77777648 Msa0377350:intron 30.0%
!!! GAAGTTTTATTTGATTGCAC+GGG - chr3_1:77777773-77777792 Msa0377350:intron 30.0%
CAATAGAAACAAGTCTAGAT+TGG + chr3_1:77777854-77777873 None:intergenic 30.0%
ATATCTCATGATAGACAAGA+CGG - chr3_1:77777997-77778016 Msa0377350:intron 30.0%
! CTCTTGTTATCAATTGCATT+TGG - chr3_1:77778271-77778290 Msa0377350:intron 30.0%
! TTGTTAGATAGTGGTTATAG+TGG + chr3_1:77778471-77778490 None:intergenic 30.0%
TGCAAAATGTTGTTAGATAG+TGG + chr3_1:77778480-77778499 None:intergenic 30.0%
TAGAAAATGTTGTCAGATAG+CGG + chr3_1:77778548-77778567 None:intergenic 30.0%
!!! CAGTTTTGAAAGAACAAACT+TGG + chr3_1:77778669-77778688 None:intergenic 30.0%
AGTGTTTGTCTGTATAAATG+AGG + chr3_1:77778928-77778947 None:intergenic 30.0%
ATAAGACGCTTATGAGTTAT+TGG + chr3_1:77779045-77779064 None:intergenic 30.0%
CTTATTGAAAAAGAGCTAGA+AGG - chr3_1:77779060-77779079 Msa0377350:intron 30.0%
!! CGATTATTTTATTCTCGTGT+TGG + chr3_1:77779232-77779251 None:intergenic 30.0%
!! CTAGTCTTACTAGAAATTCA+AGG + chr3_1:77779275-77779294 None:intergenic 30.0%
AAACATTAGAGAGATAGTTG+GGG - chr3_1:77779312-77779331 Msa0377350:intron 30.0%
AATAATGAGAGTAGATCAGA+TGG - chr3_1:77779415-77779434 Msa0377350:intron 30.0%
TGACCAACTCATTTAACTAT+AGG + chr3_1:77779696-77779715 None:intergenic 30.0%
!! ACTCTGAAAGAAAGCATTTA+CGG - chr3_1:77779789-77779808 Msa0377350:intron 30.0%
!! AAGAAAGCATTTACGGTTAT+TGG - chr3_1:77779796-77779815 Msa0377350:intron 30.0%
! TGCATACTCTGATTTGATTT+AGG - chr3_1:77779833-77779852 Msa0377350:intron 30.0%
! ACTCTGATTTGATTTAGGTT+TGG - chr3_1:77779838-77779857 Msa0377350:intron 30.0%
CACAAGATTCAATAATCTCT+CGG + chr3_1:77779895-77779914 None:intergenic 30.0%
TTGATCAAGGTTATTCACAA+GGG + chr3_1:77779947-77779966 None:intergenic 30.0%
! TAAGTGCTGTACATTAACTT+TGG - chr3_1:77780061-77780080 Msa0377350:intron 30.0%
CATTAACTTTGGTCCATATA+AGG - chr3_1:77780072-77780091 Msa0377350:intron 30.0%
GAAGGATGGTATAGTAATAT+GGG - chr3_1:77780094-77780113 Msa0377350:intron 30.0%
TCTTTCCTTGCTTATTATAC+AGG + chr3_1:77780128-77780147 None:intergenic 30.0%
GAGGAATTTGGTTAAATGAA+AGG - chr3_1:77780205-77780224 Msa0377350:intron 30.0%
! TCAAAATTTGCGTGTGATTT+TGG + chr3_1:77780303-77780322 None:intergenic 30.0%
!!! AATGATTTTTTTCCCGAAAG+GGG + chr3_1:77780743-77780762 None:intergenic 30.0%
!!! CAATGATTTTTTTCCCGAAA+GGG + chr3_1:77780744-77780763 None:intergenic 30.0%
!!! ACAATGATTTTTTTCCCGAA+AGG + chr3_1:77780745-77780764 None:intergenic 30.0%
! ATATTTTATCGCCTTCCATT+TGG - chr3_1:77780844-77780863 Msa0377350:intron 30.0%
AATTAAAGGAACCAAATGGA+AGG + chr3_1:77780858-77780877 None:intergenic 30.0%
TGAACATGCATAATAAAGGA+AGG + chr3_1:77780926-77780945 None:intergenic 30.0%
GGATTGAACATGCATAATAA+AGG + chr3_1:77780930-77780949 None:intergenic 30.0%
CAACAAGCATTCTTTACAAA+AGG + chr3_1:77781036-77781055 None:intergenic 30.0%
! AATTAGTCAAACTTCTAGGA+AGG + chr3_1:77781076-77781095 None:intergenic 30.0%
AGACAATTAGTCAAACTTCT+AGG + chr3_1:77781080-77781099 None:intergenic 30.0%
GAATTGTCATCAATCTTGTT+AGG - chr3_1:77781434-77781453 Msa0377350:intron 30.0%
! TTTGGTGAATTAGCTTAGTT+TGG - chr3_1:77781553-77781572 Msa0377350:intron 30.0%
! TTGGTGAATTAGCTTAGTTT+GGG - chr3_1:77781554-77781573 Msa0377350:intron 30.0%
TAGCATATTGTTCAATGAAG+AGG - chr3_1:77781583-77781602 Msa0377350:intron 30.0%
GAATTAATATATCCTCTCCT+TGG - chr3_1:77781615-77781634 Msa0377350:intron 30.0%
ATTAATATATCCTCTCCTTG+GGG - chr3_1:77781617-77781636 Msa0377350:intron 30.0%
! TTTTGAATGGCAAATGTTAG+TGG + chr3_1:77781753-77781772 None:intergenic 30.0%
AAAAATTTGTCAAGTGCAGT+AGG + chr3_1:77781793-77781812 None:intergenic 30.0%
!! AAAATGTAAGCATTGGATGA+AGG + chr3_1:77781822-77781841 None:intergenic 30.0%
CATTTGGAAAATGTAAGCAT+TGG + chr3_1:77781829-77781848 None:intergenic 30.0%
CATGTTCCTGAAACATAATA+AGG + chr3_1:77782033-77782052 None:intergenic 30.0%
TTCTTATTCAGATAGGGATT+AGG - chr3_1:77782223-77782242 Msa0377350:intron 30.0%
!! TTAAACCATTTGTTGTTGAG+TGG - chr3_1:77782272-77782291 Msa0377350:intron 30.0%
!!! TGCTGTTTTTCTGTTAGTTT+TGG - chr3_1:77782295-77782314 Msa0377350:intron 30.0%
ATGTCTCTAACAGAGTAATT+GGG - chr3_1:77782344-77782363 Msa0377350:exon 30.0%
AATGAAATTACGCATCAGTT+TGG - chr3_1:77782467-77782486 Msa0377350:five_prime_UTR 30.0%
TTATGATCCAGAGATTAAGA+CGG + chr3_1:77782523-77782542 None:intergenic 30.0%
AATCAAAGACATCGAAGATG+AGG - chr3_1:77774895-77774914 Msa0377350:three_prime_UTR 35.0%
ATTTGCATGTGTATAGGTTG+AGG - chr3_1:77775134-77775153 Msa0377350:CDS 35.0%
!!! TTGGTTGTTGGTTTCTGTTT+TGG - chr3_1:77775454-77775473 Msa0377350:intron 35.0%
CACTTGTCACCATATATTCA+GGG - chr3_1:77775685-77775704 Msa0377350:intron 35.0%
TAAACTTGCAAAACTGAGGA+GGG - chr3_1:77775990-77776009 Msa0377350:CDS 35.0%
ACTCTGCTGAATAAATTGAC+TGG - chr3_1:77776126-77776145 Msa0377350:intron 35.0%
CTCTGCTGAATAAATTGACT+GGG - chr3_1:77776127-77776146 Msa0377350:intron 35.0%
TCGGCCTATAGTATAATTGA+AGG + chr3_1:77776203-77776222 None:intergenic 35.0%
TTATTATCCAATGGTTCCCA+AGG - chr3_1:77776259-77776278 Msa0377350:intron 35.0%
ATACATGAAAACCAATCCTG+AGG - chr3_1:77776650-77776669 Msa0377350:CDS 35.0%
TACATGAAAACCAATCCTGA+GGG - chr3_1:77776651-77776670 Msa0377350:CDS 35.0%
! TTTAAAACATCCCTCAGGAT+TGG + chr3_1:77776664-77776683 None:intergenic 35.0%
GTGTTTGACTGATCATACAA+TGG - chr3_1:77776858-77776877 Msa0377350:intron 35.0%
! AAATAGTGCATTTGAGATGG+AGG + chr3_1:77777007-77777026 None:intergenic 35.0%
TAAGAAGTCACATGTGCATA+TGG - chr3_1:77777076-77777095 Msa0377350:intron 35.0%
AAGAAGTCACATGTGCATAT+GGG - chr3_1:77777077-77777096 Msa0377350:intron 35.0%
GGATTGCTTTCTCTTTGTAT+TGG - chr3_1:77777098-77777117 Msa0377350:intron 35.0%
CTTTCTCTTTGTATTGGGTT+TGG - chr3_1:77777104-77777123 Msa0377350:intron 35.0%
AGTTAGTGTAGTGAACTCAT+AGG + chr3_1:77777219-77777238 None:intergenic 35.0%
ATATCGTGGAGCAAAAATTC+AGG - chr3_1:77777259-77777278 Msa0377350:intron 35.0%
!!! GTTTTTGGTTTGAGGAATTC+AGG - chr3_1:77777338-77777357 Msa0377350:intron 35.0%
!!! TTTTTTTGGACATTGGTGCA+TGG - chr3_1:77777493-77777512 Msa0377350:intron 35.0%
!!! TTTTTTGGACATTGGTGCAT+GGG - chr3_1:77777494-77777513 Msa0377350:intron 35.0%
AAGTGGCAGAAACTTCAAAT+AGG + chr3_1:77777899-77777918 None:intergenic 35.0%
TTTCATCCCTGAAAACTTTC+AGG - chr3_1:77778053-77778072 Msa0377350:intron 35.0%
! TCAAGTCCTGAAAGTTTTCA+GGG + chr3_1:77778062-77778081 None:intergenic 35.0%
! ATCAAGTCCTGAAAGTTTTC+AGG + chr3_1:77778063-77778082 None:intergenic 35.0%
! TAATTTTGTGTGTCAGTTGC+TGG - chr3_1:77778181-77778200 Msa0377350:CDS 35.0%
AAATGGACAAACTTGGCTAA+TGG + chr3_1:77778317-77778336 None:intergenic 35.0%
AACAAGCGCGTATTATCAAA+TGG + chr3_1:77778334-77778353 None:intergenic 35.0%
TAAATTCCGCTACACTATAG+CGG - chr3_1:77778601-77778620 Msa0377350:intron 35.0%
GAAAGAACAAACTTGGCTAA+TGG + chr3_1:77778662-77778681 None:intergenic 35.0%
! TTACATTTTTCTCAATGCCG+AGG - chr3_1:77778695-77778714 Msa0377350:intron 35.0%
AACACATGATGGTAACTTCA+TGG + chr3_1:77778793-77778812 None:intergenic 35.0%
! CAGCAATTATCGACTATGTT+TGG - chr3_1:77778887-77778906 Msa0377350:intron 35.0%
GAAAAAGAGCTAGAAGGATT+TGG - chr3_1:77779066-77779085 Msa0377350:intron 35.0%
GTATCGTACAACTTAAAGAC+TGG - chr3_1:77779169-77779188 Msa0377350:intron 35.0%
CTAGTAAGACTAGACATGAT+AGG - chr3_1:77779282-77779301 Msa0377350:intron 35.0%
AGCTAGTGTAGAAAACATAG+TGG - chr3_1:77779339-77779358 Msa0377350:intron 35.0%
!! GAATGAAGTTTGTATCGGTT+AGG - chr3_1:77779760-77779779 Msa0377350:intron 35.0%
AAGCATTTACGGTTATTGGT+TGG - chr3_1:77779800-77779819 Msa0377350:intron 35.0%
CGAGAGATTATTGAATCTTG+TGG - chr3_1:77779893-77779912 Msa0377350:intron 35.0%
GAGATTATTGAATCTTGTGG+AGG - chr3_1:77779896-77779915 Msa0377350:intron 35.0%
TGATCAAGGTTATTCACAAG+GGG + chr3_1:77779946-77779965 None:intergenic 35.0%
CTTGATCAAGGTTATTCACA+AGG + chr3_1:77779948-77779967 None:intergenic 35.0%
ACGTCATCAAAACTTGATCA+AGG + chr3_1:77779960-77779979 None:intergenic 35.0%
!!! TGATCAAGTTTTGATGACGT+TGG - chr3_1:77779960-77779979 Msa0377350:CDS 35.0%
! TGGCTGTAACTGTAAGTTTT+TGG + chr3_1:77780006-77780025 None:intergenic 35.0%
ACTACTAACAAGTTCAACAG+TGG + chr3_1:77780026-77780045 None:intergenic 35.0%
AACTTTGGTCCATATAAGGA+AGG - chr3_1:77780076-77780095 Msa0377350:intron 35.0%
CTATACCATCCTTCCTTATA+TGG + chr3_1:77780088-77780107 None:intergenic 35.0%
GGAAGGATGGTATAGTAATA+TGG - chr3_1:77780093-77780112 Msa0377350:intron 35.0%
TGGATTTCTCATCATCTGAA+TGG + chr3_1:77780283-77780302 None:intergenic 35.0%
ACTTTCAGGAGGAAAGAAAA+GGG - chr3_1:77780425-77780444 Msa0377350:intron 35.0%
TGACCTTATAGATGTCATTG+AGG - chr3_1:77780571-77780590 Msa0377350:intron 35.0%
GACCTTATAGATGTCATTGA+GGG - chr3_1:77780572-77780591 Msa0377350:intron 35.0%
TTGTTCACAACATAGATGCA+GGG + chr3_1:77780614-77780633 None:intergenic 35.0%
GTTACAAGAATTACCTGACA+GGG + chr3_1:77780694-77780713 None:intergenic 35.0%
TGACTGAGGTAACAATAACA+TGG + chr3_1:77780716-77780735 None:intergenic 35.0%
! AATCCAAGCCCTTTTACATA+AGG + chr3_1:77780783-77780802 None:intergenic 35.0%
CATAATAAAGGAAGGTAGAC+AGG + chr3_1:77780918-77780937 None:intergenic 35.0%
TAGTCAGGATTCATACCTTT+AGG + chr3_1:77781195-77781214 None:intergenic 35.0%
!! AGATATTTAGTTCTGGGAGA+AGG + chr3_1:77781315-77781334 None:intergenic 35.0%
ACAATTCAGATCTACTTGCT+CGG + chr3_1:77781421-77781440 None:intergenic 35.0%
CTTAGAGTGGATCTTTAGTT+TGG - chr3_1:77781535-77781554 Msa0377350:intron 35.0%
! TGGTGAATTAGCTTAGTTTG+GGG - chr3_1:77781555-77781574 Msa0377350:intron 35.0%
TTAATATATCCTCTCCTTGG+GGG - chr3_1:77781618-77781637 Msa0377350:intron 35.0%
!!! TGGTTTTTTTAATCCTTGCC+AGG + chr3_1:77781702-77781721 None:intergenic 35.0%
GTGAAGATGCATGTTATAAG+TGG - chr3_1:77782003-77782022 Msa0377350:intron 35.0%
! GGAATGCCTTATTATGTTTC+AGG - chr3_1:77782024-77782043 Msa0377350:intron 35.0%
CATGTCTCTAACAGAGTAAT+TGG - chr3_1:77782343-77782362 Msa0377350:exon 35.0%
TGTCTCTAACAGAGTAATTG+GGG - chr3_1:77782345-77782364 Msa0377350:exon 35.0%
! GTTCGTTCTAGTTGGATATT+CGG - chr3_1:77782421-77782440 Msa0377350:five_prime_UTR 35.0%
! TTCGTTCTAGTTGGATATTC+GGG - chr3_1:77782422-77782441 Msa0377350:five_prime_UTR 35.0%
TGTAGAAGAAAACGAGAACG+AGG + chr3_1:77774722-77774741 None:intergenic 40.0%
! TGGAGTTTGAAACCTAAGAG+CGG + chr3_1:77774782-77774801 None:intergenic 40.0%
TTGTTGAAGAACGAGAAGCT+CGG + chr3_1:77774856-77774875 None:intergenic 40.0%
AGCTTCTCGTTCTTCAACAA+TGG - chr3_1:77774856-77774875 Msa0377350:three_prime_UTR 40.0%
GGCGAAAACTCAAAAGAACA+AGG - chr3_1:77775328-77775347 Msa0377350:CDS 40.0%
AAGGCTACTGCTCATCATTT+GGG - chr3_1:77775347-77775366 Msa0377350:CDS 40.0%
! TCATCATTTGGGGTTACTGA+AGG - chr3_1:77775358-77775377 Msa0377350:intron 40.0%
!!! ATGACCAGTGTTTTGGTTGT+TGG - chr3_1:77775442-77775461 Msa0377350:intron 40.0%
GAAACCAACAACCAAAACAC+TGG + chr3_1:77775449-77775468 None:intergenic 40.0%
!!! GTTGGTTTCTGTTTTGGCTT+TGG - chr3_1:77775460-77775479 Msa0377350:intron 40.0%
!!! GTTGTTTTAGGGATTGCGTT+TGG - chr3_1:77775598-77775617 Msa0377350:intron 40.0%
TGCATAACACATTCTGCTCA+TGG - chr3_1:77775662-77775681 Msa0377350:intron 40.0%
GCACTTGTCACCATATATTC+AGG - chr3_1:77775684-77775703 Msa0377350:intron 40.0%
TTAAACATAGGGAGAGGGAT+AGG + chr3_1:77775740-77775759 None:intergenic 40.0%
! TGTCTAAAACTCCGAACCTA+TGG - chr3_1:77775788-77775807 Msa0377350:intron 40.0%
! TGTCGACTATAGAAACCAGA+AGG + chr3_1:77775842-77775861 None:intergenic 40.0%
! TTTTAACGCTTGTCCACCAT+TGG - chr3_1:77775959-77775978 Msa0377350:CDS 40.0%
AGGCTAAACTTGCAAAACTG+AGG - chr3_1:77775986-77776005 Msa0377350:CDS 40.0%
CTAAACTTGCAAAACTGAGG+AGG - chr3_1:77775989-77776008 Msa0377350:CDS 40.0%
ACTCCTTACACCTACAACTA+AGG - chr3_1:77776014-77776033 Msa0377350:CDS 40.0%
CTCCTTACACCTACAACTAA+GGG - chr3_1:77776015-77776034 Msa0377350:CDS 40.0%
! ATTGACTGGGACATTTTCAG+AGG - chr3_1:77776140-77776159 Msa0377350:intron 40.0%
TTGAAAGGTTGCACTTCCTT+GGG + chr3_1:77776278-77776297 None:intergenic 40.0%
TGAAAATAGCAGTGCAAGGT+TGG + chr3_1:77776323-77776342 None:intergenic 40.0%
TTTGTATTGGGTTTGGGTGA+TGG - chr3_1:77777111-77777130 Msa0377350:intron 40.0%
TTGTATTGGGTTTGGGTGAT+GGG - chr3_1:77777112-77777131 Msa0377350:intron 40.0%
! ACTACACTAACTTGCATTCC+AGG - chr3_1:77777227-77777246 Msa0377350:intron 40.0%
ATTGAAACTGAGACCTTGAG+AGG + chr3_1:77777690-77777709 None:intergenic 40.0%
ATAGAGACGACTGTACTAAG+TGG + chr3_1:77777916-77777935 None:intergenic 40.0%
GATCTCCCTGGAATTATTGA+GGG - chr3_1:77778203-77778222 Msa0377350:CDS 40.0%
! TGATTGACAACACTGGCTAA+CGG + chr3_1:77778392-77778411 None:intergenic 40.0%
CTATCTGTGATTGACAACAC+TGG + chr3_1:77778399-77778418 None:intergenic 40.0%
GTGTTGTCAATCACAGATAG+CGG - chr3_1:77778399-77778418 Msa0377350:intron 40.0%
! TTGTCAGATAGCGGTTATAG+TGG + chr3_1:77778539-77778558 None:intergenic 40.0%
ACTATACCGCTATAGTGTAG+CGG + chr3_1:77778610-77778629 None:intergenic 40.0%
GTATACTGTTCTGCAAACAC+AGG - chr3_1:77778963-77778982 Msa0377350:intron 40.0%
CACAGGTTATTAGTACTGCA+AGG - chr3_1:77778980-77778999 Msa0377350:CDS 40.0%
AGCTAGAAGGATTTGGCATA+AGG - chr3_1:77779073-77779092 Msa0377350:intron 40.0%
TAAAGACTGGAGATGTTGTG+TGG - chr3_1:77779182-77779201 Msa0377350:intron 40.0%
AAAGACTGGAGATGTTGTGT+GGG - chr3_1:77779183-77779202 Msa0377350:intron 40.0%
! CATAGTGGAAATGCAAGCTT+AGG - chr3_1:77779354-77779373 Msa0377350:intron 40.0%
AAATGCAAGCTTAGGTGAGA+TGG - chr3_1:77779362-77779381 Msa0377350:intron 40.0%
TCTACATGTCTTCTCTCTAC+AGG + chr3_1:77779389-77779408 None:intergenic 40.0%
AATGAGAGTAGATCAGATGG+AGG - chr3_1:77779418-77779437 Msa0377350:intron 40.0%
ATGAGAGTAGATCAGATGGA+GGG - chr3_1:77779419-77779438 Msa0377350:intron 40.0%
! AGTCAAATCTCTAGAGACGA+AGG - chr3_1:77779443-77779462 Msa0377350:intron 40.0%
TTGCTGTGTCACCAATTATG+TGG - chr3_1:77779614-77779633 Msa0377350:intron 40.0%
TAGTAATAAGTGGAGTCCCA+TGG + chr3_1:77779647-77779666 None:intergenic 40.0%
TCTCTCGGAATCAAACTTCA+TGG + chr3_1:77779880-77779899 None:intergenic 40.0%
GGAGGATTACTTTGTGTATG+TGG - chr3_1:77779914-77779933 Msa0377350:intron 40.0%
TTGGTCCATATAAGGAAGGA+TGG - chr3_1:77780080-77780099 Msa0377350:intron 40.0%
ATTCCTCTCCCAGAAAATCT+GGG + chr3_1:77780192-77780211 None:intergenic 40.0%
AATTCCTCTCCCAGAAAATC+TGG + chr3_1:77780193-77780212 None:intergenic 40.0%
!! GATTTTCTGGGAGAGGAATT+TGG - chr3_1:77780193-77780212 Msa0377350:intron 40.0%
!! ATTGTCCGTTACTGACTTTC+TGG - chr3_1:77780253-77780272 Msa0377350:intron 40.0%
TTTCTTTCCTCCTGAAAGTC+AGG + chr3_1:77780424-77780443 None:intergenic 40.0%
GACTTTCAGGAGGAAAGAAA+AGG - chr3_1:77780424-77780443 Msa0377350:intron 40.0%
CACGGTATCAAGATCTAGAT+GGG + chr3_1:77780483-77780502 None:intergenic 40.0%
TCACGGTATCAAGATCTAGA+TGG + chr3_1:77780484-77780503 None:intergenic 40.0%
TCTAGATCTTGATACCGTGA+AGG - chr3_1:77780484-77780503 Msa0377350:intron 40.0%
ATCTATAAGGTCATCTGCAG+TGG + chr3_1:77780564-77780583 None:intergenic 40.0%
TGCCCTCAATGACATCTATA+AGG + chr3_1:77780577-77780596 None:intergenic 40.0%
CTTGTTCACAACATAGATGC+AGG + chr3_1:77780615-77780634 None:intergenic 40.0%
GATTGATCAGATCACACTTG+AGG - chr3_1:77780634-77780653 Msa0377350:intron 40.0%
GGTTACAAGAATTACCTGAC+AGG + chr3_1:77780695-77780714 None:intergenic 40.0%
CATCCTTATGTAAAAGGGCT+TGG - chr3_1:77780777-77780796 Msa0377350:intron 40.0%
GGTAGACAGGTATGAAATGA+GGG + chr3_1:77780905-77780924 None:intergenic 40.0%
AGGTAGACAGGTATGAAATG+AGG + chr3_1:77780906-77780925 None:intergenic 40.0%
ATGGGCTTCTGGATAAAGTT+TGG - chr3_1:77781136-77781155 Msa0377350:CDS 40.0%
TGGGCTTCTGGATAAAGTTT+GGG - chr3_1:77781137-77781156 Msa0377350:CDS 40.0%
TAATATATCCTCTCCTTGGG+GGG - chr3_1:77781619-77781638 Msa0377350:intron 40.0%
ATCCTCTAGTATCTCATGCA+GGG + chr3_1:77782132-77782151 None:intergenic 40.0%
TCTTAGTAAGACTTTCCCCA+GGG - chr3_1:77782173-77782192 Msa0377350:intron 40.0%
TTTGGAAATGATGCGTCTTG+TGG - chr3_1:77782313-77782332 Msa0377350:CDS 40.0%
TTGGAAATGATGCGTCTTGT+GGG - chr3_1:77782314-77782333 Msa0377350:CDS 40.0%
CTGTGATTGTTCGTTCTAGT+TGG - chr3_1:77782413-77782432 Msa0377350:five_prime_UTR 40.0%
ATATTCGGGTATGCATATGC+TGG - chr3_1:77782436-77782455 Msa0377350:five_prime_UTR 40.0%
TGCTTAACCGTCTTAATCTC+TGG - chr3_1:77782513-77782532 Msa0377350:five_prime_UTR 40.0%
AGAGCGGTGGTGAAATGTTA+CGG + chr3_1:77774766-77774785 None:intergenic 45.0%
AACATTTCACCACCGCTCTT+AGG - chr3_1:77774767-77774786 Msa0377350:three_prime_UTR 45.0%
! AGTTTGAAACCTAAGAGCGG+TGG + chr3_1:77774779-77774798 None:intergenic 45.0%
GGAGAGAAGCGAAGTAAGAT+TGG + chr3_1:77774802-77774821 None:intergenic 45.0%
TCGTTCTTCAACAATGGCGA+CGG - chr3_1:77774862-77774881 Msa0377350:three_prime_UTR 45.0%
CAAGGCTACTGCTCATCATT+TGG - chr3_1:77775346-77775365 Msa0377350:CDS 45.0%
AGGCTACTGCTCATCATTTG+GGG - chr3_1:77775348-77775367 Msa0377350:CDS 45.0%
!!! GGTTTCTGTTTTGGCTTTGG+TGG - chr3_1:77775463-77775482 Msa0377350:intron 45.0%
!!! TTCTGTTTTGGCTTTGGTGG+AGG - chr3_1:77775466-77775485 Msa0377350:intron 45.0%
CAAGTTTAGCCTAGCACCAA+TGG + chr3_1:77775978-77775997 None:intergenic 45.0%
CTCCCTTAGTTGTAGGTGTA+AGG + chr3_1:77776020-77776039 None:intergenic 45.0%
CTTACACCTACAACTAAGGG+AGG - chr3_1:77776018-77776037 Msa0377350:CDS 45.0%
AAAAGTGGGGATGCAAGAGT+CGG - chr3_1:77776072-77776091 Msa0377350:CDS 45.0%
AGAGTAGACTTGCCAACTGA+CGG + chr3_1:77776111-77776130 None:intergenic 45.0%
!! TGGGACATTTTCAGAGGTAC+AGG - chr3_1:77776146-77776165 Msa0377350:intron 45.0%
GTTGAAAGGTTGCACTTCCT+TGG + chr3_1:77776279-77776298 None:intergenic 45.0%
! GCATCAGATAGGAGTACATG+AGG + chr3_1:77776917-77776936 None:intergenic 45.0%
! TAGTGCATTTGAGATGGAGG+AGG + chr3_1:77777004-77777023 None:intergenic 45.0%
TCTCGACTAGCATCAGAAAG+AGG + chr3_1:77777389-77777408 None:intergenic 45.0%
GCACATGCACTTAGTTTCCA+AGG - chr3_1:77777466-77777485 Msa0377350:intron 45.0%
CATGGGTCGAAACATTGTGA+TGG - chr3_1:77777511-77777530 Msa0377350:intron 45.0%
GTCTCAGTTTCAATTCTCCC+CGG - chr3_1:77777696-77777715 Msa0377350:intron 45.0%
GGATCTCCCTGGAATTATTG+AGG - chr3_1:77778202-77778221 Msa0377350:CDS 45.0%
TGGCACCCTCAATAATTCCA+GGG + chr3_1:77778211-77778230 None:intergenic 45.0%
TTGGCACCCTCAATAATTCC+AGG + chr3_1:77778212-77778231 None:intergenic 45.0%
!! TGGAATTATTGAGGGTGCCA+AGG - chr3_1:77778211-77778230 Msa0377350:CDS 45.0%
!! ATTATTGAGGGTGCCAAGGA+TGG - chr3_1:77778215-77778234 Msa0377350:CDS 45.0%
AATTCTCGCTTCAGCTAGAG+CGG + chr3_1:77779149-77779168 None:intergenic 45.0%
TCAAGGCAACATCTTCGTCT+CGG + chr3_1:77779258-77779277 None:intergenic 45.0%
AAGTCTCATCCCACAAAGTG+GGG + chr3_1:77779583-77779602 None:intergenic 45.0%
CAAGTCTCATCCCACAAAGT+GGG + chr3_1:77779584-77779603 None:intergenic 45.0%
TAACCACCAACATATGTCGC+AGG - chr3_1:77780162-77780181 Msa0377350:intron 45.0%
GCATGCCAGAAAGTCAGTAA+CGG + chr3_1:77780261-77780280 None:intergenic 45.0%
TTCCTCCTGAAAGTCAGGTT+TGG + chr3_1:77780419-77780438 None:intergenic 45.0%
TTCAGGAGGAAAGAAAAGGG+TGG - chr3_1:77780428-77780447 Msa0377350:intron 45.0%
TCAGGAGGAAAGAAAAGGGT+GGG - chr3_1:77780429-77780448 Msa0377350:intron 45.0%
CTCGCTACATATAGCCTTCA+CGG + chr3_1:77780501-77780520 None:intergenic 45.0%
TCAGATCACACTTGAGGAAC+TGG - chr3_1:77780640-77780659 Msa0377350:intron 45.0%
ACTTGAGGAACTGGAGATCT+TGG - chr3_1:77780649-77780668 Msa0377350:intron 45.0%
!! CCTCAGTCATTTTCCCCTTT+CGG - chr3_1:77780727-77780746 Msa0377350:intron 45.0%
!! CTCAGTCATTTTCCCCTTTC+GGG - chr3_1:77780728-77780747 Msa0377350:intron 45.0%
! GGCAATTAGTTTCTGGGCAT+GGG + chr3_1:77780959-77780978 None:intergenic 45.0%
! AGGCAATTAGTTTCTGGGCA+TGG + chr3_1:77780960-77780979 None:intergenic 45.0%
TCTGTTATTCAGTGCACACC+TGG - chr3_1:77781101-77781120 Msa0377350:CDS 45.0%
CTTTATCCAGAAGCCCATCA+AGG + chr3_1:77781134-77781153 None:intergenic 45.0%
ATTACAGGGTCTTCGTAGTC+AGG + chr3_1:77781210-77781229 None:intergenic 45.0%
TTTCTGCGATCGCATTCACA+AGG - chr3_1:77781260-77781279 Msa0377350:intron 45.0%
TTGCACTGTCTGCATGAATG+AGG - chr3_1:77781367-77781386 Msa0377350:intron 45.0%
AATATATCCTCTCCTTGGGG+GGG - chr3_1:77781620-77781639 Msa0377350:intron 45.0%
!! AGCTCAACTGGTTTGAGTTG+AGG - chr3_1:77781646-77781665 Msa0377350:intron 45.0%
!! GCTCAACTGGTTTGAGTTGA+GGG - chr3_1:77781647-77781666 Msa0377350:intron 45.0%
!! CTGGTTTGAGTTGAGGGTTA+AGG - chr3_1:77781653-77781672 Msa0377350:intron 45.0%
! TGAGTTGAGGGTTAAGGAGT+TGG - chr3_1:77781659-77781678 Msa0377350:intron 45.0%
TTTGTCAAGTGCAGTAGGAG+AGG + chr3_1:77781788-77781807 None:intergenic 45.0%
TTCCAAATGATGCAGTGCTC+TGG - chr3_1:77781840-77781859 Msa0377350:intron 45.0%
AAACACAAGCCTCAGAGAGT+CGG - chr3_1:77781880-77781899 Msa0377350:CDS 45.0%
AGTATCTCATGCAGGGAATG+TGG + chr3_1:77782125-77782144 None:intergenic 45.0%
TTCCCTGCATGAGATACTAG+AGG - chr3_1:77782127-77782146 Msa0377350:intron 45.0%
CATCCTCTAGTATCTCATGC+AGG + chr3_1:77782133-77782152 None:intergenic 45.0%
CTCTTAGTAAGACTTTCCCC+AGG - chr3_1:77782172-77782191 Msa0377350:intron 45.0%
AAGACTTTCCCCAGGGTTAT+TGG - chr3_1:77782180-77782199 Msa0377350:intron 45.0%
CAGCACCACTCAACAACAAA+TGG + chr3_1:77782280-77782299 None:intergenic 45.0%
!!! AATAGTATTATTTTTTTTTT+TGG - chr3_1:77776343-77776362 Msa0377350:intron 5.0%
!!! AATATTTTTATTTTTGTTTT+TGG - chr3_1:77777323-77777342 Msa0377350:intron 5.0%
!! AAATATATTCATTTATAATT+TGG + chr3_1:77777614-77777633 None:intergenic 5.0%
!!! TTTTAAATAAAAAATAATAG+TGG + chr3_1:77778025-77778044 None:intergenic 5.0%
!!! ATAATACATTATTTAATTTT+TGG - chr3_1:77778766-77778785 Msa0377350:intron 5.0%
!! ATAAATAAAAATAATTATCA+AGG + chr3_1:77780349-77780368 None:intergenic 5.0%
GAAAACGAGAACGAGGACGA+AGG + chr3_1:77774715-77774734 None:intergenic 50.0%
AATGTTACGGGTTCAGAGCG+TGG + chr3_1:77774753-77774772 None:intergenic 50.0%
GAGCGGTGGTGAAATGTTAC+GGG + chr3_1:77774765-77774784 None:intergenic 50.0%
AACGAGAAGCTCGGAAGGAA+AGG + chr3_1:77774847-77774866 None:intergenic 50.0%
TGAAGAACGAGAAGCTCGGA+AGG + chr3_1:77774852-77774871 None:intergenic 50.0%
!!! GTTTTGGCTTTGGTGGAGGT+TGG - chr3_1:77775470-77775489 Msa0377350:intron 50.0%
GTTTAGCCTAGCACCAATGG+TGG + chr3_1:77775975-77775994 None:intergenic 50.0%
ACACCTACAACTAAGGGAGG+TGG - chr3_1:77776021-77776040 Msa0377350:CDS 50.0%
GAGTAGACTTGCCAACTGAC+GGG + chr3_1:77776110-77776129 None:intergenic 50.0%
TGCACTTCCTTGGGAACCAT+TGG + chr3_1:77776269-77776288 None:intergenic 50.0%
CCACGATATGTGATCACACC+TGG + chr3_1:77777248-77777267 None:intergenic 50.0%
CCAGGTGTGATCACATATCG+TGG - chr3_1:77777245-77777264 Msa0377350:intron 50.0%
!! GAAACCTATTTGGGTTGGCC+TGG - chr3_1:77777634-77777653 Msa0377350:intron 50.0%
! ATTCTCCCCGGTGCCAATTT+CGG - chr3_1:77777708-77777727 Msa0377350:intron 50.0%
CCAAACTAGCCCACCGAAAT+TGG + chr3_1:77777724-77777743 None:intergenic 50.0%
!! CCAATTTCGGTGGGCTAGTT+TGG - chr3_1:77777721-77777740 Msa0377350:intron 50.0%
TCCTCTTCCCTTTCCATCCT+TGG + chr3_1:77778231-77778250 None:intergenic 50.0%
AGGATGGAAAGGGAAGAGGA+AGG - chr3_1:77778231-77778250 Msa0377350:intron 50.0%
CTTCAGCTAGAGCGGTACAA+TGG + chr3_1:77779141-77779160 None:intergenic 50.0%
ACTGGAGATGTTGTGTGGGA+CGG - chr3_1:77779187-77779206 Msa0377350:intron 50.0%
CCAAGTCTCATCCCACAAAG+TGG + chr3_1:77779585-77779604 None:intergenic 50.0%
CCACTTTGTGGGATGAGACT+TGG - chr3_1:77779582-77779601 Msa0377350:intron 50.0%
GTCACCAATTATGTGGCTGC+TGG - chr3_1:77779621-77779640 Msa0377350:intron 50.0%
ATGGCCAGCAGCCACATAAT+TGG + chr3_1:77779628-77779647 None:intergenic 50.0%
AATTATGTGGCTGCTGGCCA+TGG - chr3_1:77779627-77779646 Msa0377350:intron 50.0%
ATTATGTGGCTGCTGGCCAT+GGG - chr3_1:77779628-77779647 Msa0377350:intron 50.0%
CACCAACATATGTCGCAGGT+GGG - chr3_1:77780166-77780185 Msa0377350:intron 50.0%
AGCCACCAAACCTGACTTTC+AGG - chr3_1:77780411-77780430 Msa0377350:intron 50.0%
CTCCTGAAAGTCAGGTTTGG+TGG + chr3_1:77780416-77780435 None:intergenic 50.0%
CACCAAACCTGACTTTCAGG+AGG - chr3_1:77780414-77780433 Msa0377350:intron 50.0%
TTCCTCATTACTGCCCTGTC+AGG - chr3_1:77780678-77780697 Msa0377350:intron 50.0%
TACCTGACAGGGCAGTAATG+AGG + chr3_1:77780683-77780702 None:intergenic 50.0%
CCGAAAGGGGAAAATGACTG+AGG + chr3_1:77780730-77780749 None:intergenic 50.0%
TATTCAGTGCACACCTGGAG+TGG - chr3_1:77781106-77781125 Msa0377350:CDS 50.0%
ACCTGGAGTGGAACCTTGAT+GGG - chr3_1:77781118-77781137 Msa0377350:CDS 50.0%
ATATATCCTCTCCTTGGGGG+GGG - chr3_1:77781621-77781640 Msa0377350:intron 50.0%
GTTGAGGGTTAAGGAGTTGG+AGG - chr3_1:77781662-77781681 Msa0377350:intron 50.0%
GTTAAGGAGTTGGAGGTCCA+GGG - chr3_1:77781669-77781688 Msa0377350:intron 50.0%
!! GACCAGAGCACTGCATCATT+TGG + chr3_1:77781845-77781864 None:intergenic 50.0%
AATGATGCAGTGCTCTGGTC+TGG - chr3_1:77781845-77781864 Msa0377350:intron 50.0%
ATGATGCAGTGCTCTGGTCT+GGG - chr3_1:77781846-77781865 Msa0377350:intron 50.0%
!! CAGGGAATGTGGTCGGTTTT+TGG + chr3_1:77782114-77782133 None:intergenic 50.0%
TCTCATGCAGGGAATGTGGT+CGG + chr3_1:77782121-77782140 None:intergenic 50.0%
AGCGTGATCCAATAACCCTG+GGG + chr3_1:77782191-77782210 None:intergenic 50.0%
GAGCGTGATCCAATAACCCT+GGG + chr3_1:77782192-77782211 None:intergenic 50.0%
! GCTTGTCCACCATTGGTGCT+AGG - chr3_1:77775966-77775985 Msa0377350:CDS 55.0%
CCTACAACTAAGGGAGGTGG+CGG - chr3_1:77776024-77776043 Msa0377350:CDS 55.0%
GATGCAAGAGTCGGTCTCGT+GGG - chr3_1:77776081-77776100 Msa0377350:CDS 55.0%
!! ACCTATTTGGGTTGGCCTGG+TGG - chr3_1:77777637-77777656 Msa0377350:intron 55.0%
ACCACCAGGCCAACCCAAAT+AGG + chr3_1:77777641-77777660 None:intergenic 55.0%
!! GTGGTGTTGGCTTGAGACCT+TGG - chr3_1:77777656-77777675 Msa0377350:intron 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr3_1:77777676-77777695 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr3_1:77777674-77777693 Msa0377350:intron 55.0%
TAGCCCACCGAAATTGGCAC+CGG + chr3_1:77777718-77777737 None:intergenic 55.0%
TGTCAGTTGCTGGATCTCCC+TGG - chr3_1:77778191-77778210 Msa0377350:CDS 55.0%
!! TGAGGGTGCCAAGGATGGAA+AGG - chr3_1:77778220-77778239 Msa0377350:CDS 55.0%
!! GAGGGTGCCAAGGATGGAAA+GGG - chr3_1:77778221-77778240 Msa0377350:CDS 55.0%
GCCAAGGATGGAAAGGGAAG+AGG - chr3_1:77778227-77778246 Msa0377350:intron 55.0%
TGGAAAGGGAAGAGGAAGGC+AGG - chr3_1:77778235-77778254 Msa0377350:intron 55.0%
TGTTGTGTGGGACGGAGTGT+TGG - chr3_1:77779195-77779214 Msa0377350:intron 55.0%
! GTTGTGTGGGACGGAGTGTT+GGG - chr3_1:77779196-77779215 Msa0377350:intron 55.0%
ACAAAGTGGGGTCGGCTACA+TGG + chr3_1:77779571-77779590 None:intergenic 55.0%
ATGTAGCCGACCCCACTTTG+TGG - chr3_1:77779570-77779589 Msa0377350:intron 55.0%
TGTAGCCGACCCCACTTTGT+GGG - chr3_1:77779571-77779590 Msa0377350:intron 55.0%
CTCATCCCACAAAGTGGGGT+CGG + chr3_1:77779579-77779598 None:intergenic 55.0%
CCACCTGCGACATATGTTGG+TGG + chr3_1:77780168-77780187 None:intergenic 55.0%
CCACCAACATATGTCGCAGG+TGG - chr3_1:77780165-77780184 Msa0377350:intron 55.0%
! CAGGTGGGCCCAGATTTTCT+GGG - chr3_1:77780181-77780200 Msa0377350:intron 55.0%
! GTTTCTGGGCATGGGCATAG+AGG + chr3_1:77780951-77780970 None:intergenic 55.0%
CACCTGGAGTGGAACCTTGA+TGG - chr3_1:77781117-77781136 Msa0377350:CDS 55.0%
!! GTGGAACCTTGATGGGCTTC+TGG - chr3_1:77781125-77781144 Msa0377350:CDS 55.0%
TATATCCTCTCCTTGGGGGG+GGG - chr3_1:77781622-77781641 Msa0377350:intron 55.0%
GGTTAAGGAGTTGGAGGTCC+AGG - chr3_1:77781668-77781687 Msa0377350:intron 55.0%
TGATGCAGTGCTCTGGTCTG+GGG - chr3_1:77781847-77781866 Msa0377350:intron 55.0%
!! TCTACCTTGCCGACTCTCTG+AGG + chr3_1:77781892-77781911 None:intergenic 55.0%
GGAGCGTGATCCAATAACCC+TGG + chr3_1:77782193-77782212 None:intergenic 55.0%
CCGCCACCTCCCTTAGTTGT+AGG + chr3_1:77776027-77776046 None:intergenic 60.0%
GGATGCAAGAGTCGGTCTCG+TGG - chr3_1:77776080-77776099 Msa0377350:CDS 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG - chr3_1:77777643-77777662 Msa0377350:intron 60.0%
GGTCTCAAGCCAACACCACC+AGG + chr3_1:77777655-77777674 None:intergenic 60.0%
! TCCCCGGTGCCAATTTCGGT+GGG - chr3_1:77777712-77777731 Msa0377350:intron 60.0%
AGCCCACCGAAATTGGCACC+GGG + chr3_1:77777717-77777736 None:intergenic 60.0%
GGCCCACCTGCGACATATGT+TGG + chr3_1:77780171-77780190 None:intergenic 60.0%
! GCAGGTGGGCCCAGATTTTC+TGG - chr3_1:77780180-77780199 Msa0377350:intron 60.0%
!! GGGCCCAGATTTTCTGGGAG+AGG - chr3_1:77780186-77780205 Msa0377350:intron 60.0%
GCCCATCAAGGTTCCACTCC+AGG + chr3_1:77781122-77781141 None:intergenic 60.0%
GAGGTCCAGGGTTCAAGTCC+TGG - chr3_1:77781681-77781700 Msa0377350:intron 60.0%
CCTTGCCAGGACTTGAACCC+TGG + chr3_1:77781689-77781708 None:intergenic 60.0%
CCAGGGTTCAAGTCCTGGCA+AGG - chr3_1:77781686-77781705 Msa0377350:intron 60.0%
CAAGCCTCAGAGAGTCGGCA+AGG - chr3_1:77781885-77781904 Msa0377350:intron 60.0%
! ACTAAGGGAGGTGGCGGTGC+TGG - chr3_1:77776030-77776049 Msa0377350:CDS 65.0%
CTCGTGGGCTTCCCGTCAGT+TGG - chr3_1:77776096-77776115 Msa0377350:CDS 65.0%
! CTCCCCGGTGCCAATTTCGG+TGG - chr3_1:77777711-77777730 Msa0377350:intron 65.0%
GCCCACCGAAATTGGCACCG+GGG + chr3_1:77777716-77777735 None:intergenic 65.0%
AGTTGAGCTACCCCCCCCCA+AGG + chr3_1:77781635-77781654 None:intergenic 65.0%
TTGGGGGGGGGTAGCTCAAC+TGG - chr3_1:77781634-77781653 Msa0377350:intron 65.0%
!! GGAGGTGGCGGTGCTGGTGA+AGG - chr3_1:77776036-77776055 Msa0377350:CDS 70.0%
AGCTACCCCCCCCCAAGGAG+AGG + chr3_1:77781630-77781649 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 77774686 77782542 77774686 ID=Msa0377350;Name=Msa0377350
chr3_1 mRNA 77774686 77782542 77774686 ID=Msa0377350-mRNA-1;Parent=Msa0377350;Name=Msa0377350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=189|0.88|0.9|1|1|1|10|446|367
chr3_1 exon 77774686 77775182 77774686 ID=Msa0377350-mRNA-1:exon:18620;Parent=Msa0377350-mRNA-1
chr3_1 exon 77775322 77775373 77775322 ID=Msa0377350-mRNA-1:exon:18619;Parent=Msa0377350-mRNA-1
chr3_1 exon 77775927 77776115 77775927 ID=Msa0377350-mRNA-1:exon:18618;Parent=Msa0377350-mRNA-1
chr3_1 exon 77776529 77776828 77776529 ID=Msa0377350-mRNA-1:exon:18617;Parent=Msa0377350-mRNA-1
chr3_1 exon 77778134 77778243 77778134 ID=Msa0377350-mRNA-1:exon:18616;Parent=Msa0377350-mRNA-1
chr3_1 exon 77778972 77779031 77778972 ID=Msa0377350-mRNA-1:exon:18615;Parent=Msa0377350-mRNA-1
chr3_1 exon 77779948 77780019 77779948 ID=Msa0377350-mRNA-1:exon:18614;Parent=Msa0377350-mRNA-1
chr3_1 exon 77781067 77781240 77781067 ID=Msa0377350-mRNA-1:exon:18613;Parent=Msa0377350-mRNA-1
chr3_1 exon 77781849 77781902 77781849 ID=Msa0377350-mRNA-1:exon:18612;Parent=Msa0377350-mRNA-1
chr3_1 exon 77782312 77782542 77782312 ID=Msa0377350-mRNA-1:exon:18611;Parent=Msa0377350-mRNA-1
chr3_1 five_prime_UTR 77782354 77782542 77782354 ID=Msa0377350-mRNA-1:five_prime_utr;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77782312 77782353 77782312 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77781849 77781902 77781849 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77781067 77781240 77781067 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77779948 77780019 77779948 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77778972 77779031 77778972 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77778134 77778243 77778134 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77776529 77776828 77776529 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77775927 77776115 77775927 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77775322 77775373 77775322 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 CDS 77775132 77775182 77775132 ID=Msa0377350-mRNA-1:cds;Parent=Msa0377350-mRNA-1
chr3_1 three_prime_UTR 77774686 77775131 77774686 ID=Msa0377350-mRNA-1:three_prime_utr;Parent=Msa0377350-mRNA-1
Gene Sequence

>Msa0377350

ATGGCGACGGTAATGCAGAAAATCAAAGACATCGAAGATGAGATGGCGAAAACTCAAAAGAACAAGGCTACTGCTCATCATTTGGGGTTACTGAAGGCTAAACTTGCAAAACTGAGGAGGGAACTCCTTACACCTACAACTAAGGGAGGTGGCGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATGCAAGAGTCGGTCTCGTGGGCTTCCCGTCAGTTGGCAAGTCTACTCTGCTGAATAAATTGACTGGGACATTTTCAGAGGTTGCTTCCTATGAGTTCACTACACTAACTTGCATTCCAGGTGTGATCACATATCGTGGAGCAAAAATTCAGTTGCTGGATCTCCCTGGAATTATTGAGGGTGCCAAGGATGGAAAGGGAAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTAATTGTTCTCGATGCAATAAAACCAATAACTCATAAGCGTCTTATTGAAAAAGAGCTAGAAGGATTTGGCATAAGGTTAAACAAAGAGCCACCAAACCTGACTTTCAGGAGGAAAGAAAAGGGTGGGATTAATTTCACTTCAACTGCTACAAACACCCATCTAGATCTTGATACCGTGAAGGCTATATGTAGCGAGTACAGAATTCATAATGCAGATATTACTTTAAGGTACGATGCCACTGCAGATGACCTTATAGATGTCATTGAGGGCAGCAGAGTATACACACCCTGCATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTTCCTCATTACTGCCCTGTCAGTGCACACCTGGAGTGGAACCTTGATGGGCTTCTGGATAAAGTTTGGGAGTATCTTAATTTAACTCGTATTTATACTAAACCTAAAGGTATGAATCCTGACTACGAAGACCCTGTAATATTGTCATCTAAGAAGAAGACAGTTGAAGATTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAATGCTCTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAGAGAGTCGGCAAGGAACATGAACTTGAAGACGAAGACGTTGTTCAGATCATCAAGAAAGTATGA

Protein sequence

>Msa0377350

MATVMQKIKDIEDEMAKTQKNKATAHHLGLLKAKLAKLRRELLTPTTKGGGGAGEGFDVTKSGDARVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRRKEKGGINFTSTATNTHLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRVYTPCIYVVNKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLDKVWEYLNLTRIYTKPKGMNPDYEDPVILSSKKKTVEDFCDRIHKDMLKQFNALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV*