AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378130 MtrunA17_Chr3g0130321 94.845 194 8 2 1 192 1 194 1.40e-132 370
Msa0378130 MtrunA17_Chr8g0384351 59.474 190 50 8 5 192 8 172 1.49e-61 189
Msa0378130 MtrunA17_Chr4g0050701 43.316 187 88 5 7 192 11 180 4.41e-44 145
Msa0378130 MtrunA17_Chr5g0417791 34.211 190 101 7 5 178 1 182 5.60e-29 108
Msa0378130 MtrunA17_Chr4g0042561 37.888 161 84 6 6 158 8 160 4.31e-27 103
Msa0378130 MtrunA17_Chr2g0318101 36.810 163 90 5 7 158 15 175 7.93e-27 104
Msa0378130 MtrunA17_Chr7g0263931 36.810 163 87 6 5 158 9 164 1.35e-25 100
Msa0378130 MtrunA17_Chr4g0060931 40.373 161 76 7 7 158 17 166 3.88e-25 100
Msa0378130 MtrunA17_Chr4g0047841 34.286 175 90 5 7 158 15 187 6.05e-25 99.8
Msa0378130 MtrunA17_Chr3g0091921 37.654 162 87 4 3 158 12 165 1.15e-24 98.2
Msa0378130 MtrunA17_Chr3g0139331 40.373 161 74 6 7 158 11 158 4.06e-24 97.4
Msa0378130 MtrunA17_Chr1g0147421 40.000 165 70 7 7 158 27 175 1.09e-23 96.3
Msa0378130 MtrunA17_Chr2g0318081 33.125 160 91 3 5 158 14 163 1.12e-23 96.3
Msa0378130 MtrunA17_Chr2g0326361 36.420 162 81 7 7 156 14 165 1.18e-23 95.9
Msa0378130 MtrunA17_Chr3g0131911 32.515 163 96 4 4 157 11 168 1.30e-23 94.0
Msa0378130 MtrunA17_Chr3g0109821 30.841 214 120 6 5 199 4 208 1.95e-23 97.1
Msa0378130 MtrunA17_Chr3g0124761 32.515 163 96 4 1 157 1 155 2.25e-23 94.4
Msa0378130 MtrunA17_Chr2g0309331 32.317 164 89 5 5 158 8 159 2.50e-23 95.1
Msa0378130 MtrunA17_Chr8g0384721 32.121 165 95 4 1 157 1 156 5.28e-23 93.2
Msa0378130 MtrunA17_Chr7g0214071 35.185 162 80 5 5 157 13 158 8.13e-23 92.4
Msa0378130 MtrunA17_Chr6g0484441 37.500 160 78 6 7 158 5 150 3.54e-22 91.7
Msa0378130 MtrunA17_Chr8g0359921 32.022 178 105 4 5 176 12 179 4.85e-22 91.7
Msa0378130 MtrunA17_Chr8g0385991 30.625 160 98 4 4 156 11 164 9.91e-22 89.0
Msa0378130 MtrunA17_Chr7g0252971 32.370 173 94 7 5 161 6 171 2.81e-21 89.7
Msa0378130 MtrunA17_Chr4g0017921 32.222 180 97 7 7 175 8 173 3.89e-21 89.4
Msa0378130 MtrunA17_Chr2g0312321 34.161 161 85 6 5 157 9 156 6.90e-21 88.2
Msa0378130 MtrunA17_Chr3g0130731 31.447 159 95 4 5 157 5 155 7.02e-21 87.8
Msa0378130 MtrunA17_Chr2g0316971 35.220 159 89 4 7 158 23 174 7.14e-21 89.0
Msa0378130 MtrunA17_Chr6g0481091 36.641 131 74 3 5 127 4 133 9.76e-21 86.3
Msa0378130 MtrunA17_Chr8g0346001 30.247 162 103 3 6 158 14 174 1.07e-20 89.0
Msa0378130 MtrunA17_Chr5g0433781 32.787 183 105 5 5 179 4 176 2.30e-20 88.2
Msa0378130 MtrunA17_Chr8g0361731 31.214 173 105 5 9 171 16 184 3.44e-20 87.0
Msa0378130 MtrunA17_Chr5g0398971 29.341 167 99 4 1 158 1 157 3.48e-20 86.7
Msa0378130 MtrunA17_Chr1g0183741 29.714 175 98 4 5 167 8 169 1.05e-19 84.3
Msa0378130 MtrunA17_Chr4g0056541 31.319 182 102 6 1 173 1 168 4.87e-19 83.6
Msa0378130 MtrunA17_Chr8g0384201 34.146 164 88 5 4 158 3 155 5.99e-19 84.0
Msa0378130 MtrunA17_Chr7g0253011 32.500 160 92 3 7 157 17 169 6.42e-19 83.6
Msa0378130 MtrunA17_Chr3g0130101 30.846 201 115 8 1 189 1 189 6.67e-19 83.2
Msa0378130 MtrunA17_Chr7g0261411 30.675 163 87 4 5 157 8 154 1.04e-18 82.0
Msa0378130 MtrunA17_Chr8g0345731 34.000 150 87 4 7 144 24 173 2.09e-18 78.6
Msa0378130 MtrunA17_Chr6g0453131 29.114 158 106 1 7 158 15 172 2.09e-18 82.0
Msa0378130 MtrunA17_Chr2g0309891 29.630 162 97 3 5 158 4 156 3.34e-18 81.3
Msa0378130 MtrunA17_Chr4g0018391 30.178 169 93 6 1 158 1 155 4.78e-18 80.9
Msa0378130 MtrunA17_Chr5g0417001 31.214 173 104 6 9 171 16 183 5.38e-18 80.9
Msa0378130 MtrunA17_Chr6g0453451 32.704 159 93 4 6 158 19 169 5.74e-18 80.1
Msa0378130 MtrunA17_Chr1g0197351 32.353 170 102 5 7 168 42 206 8.07e-18 80.9
Msa0378130 MtrunA17_Chr2g0321631 31.395 172 95 7 1 159 1 162 1.07e-17 78.6
Msa0378130 MtrunA17_Chr2g0311651 29.878 164 99 5 9 158 24 185 1.12e-17 79.3
Msa0378130 MtrunA17_Chr1g0200561 29.630 162 91 6 7 158 19 167 1.26e-17 79.7
Msa0378130 MtrunA17_Chr5g0400461 27.835 194 114 3 5 184 4 185 1.57e-17 79.3
Msa0378130 MtrunA17_Chr8g0364791 33.742 163 90 5 4 158 3 155 2.57e-17 79.3
Msa0378130 MtrunA17_Chr4g0026141 30.000 170 100 5 1 159 1 162 2.67e-17 77.8
Msa0378130 MtrunA17_Chr2g0311661 29.193 161 100 4 9 156 23 182 3.64e-17 77.8
Msa0378130 MtrunA17_Chr5g0442771 27.673 159 105 4 9 158 20 177 4.09e-17 77.8
Msa0378130 MtrunA17_Chr7g0217721 30.814 172 94 4 5 158 17 181 4.10e-17 78.2
Msa0378130 MtrunA17_Chr3g0128151 33.750 160 88 4 7 158 22 171 4.71e-17 78.6
Msa0378130 MtrunA17_Chr5g0428991 32.919 161 90 5 6 158 24 174 5.91e-17 78.6
Msa0378130 MtrunA17_Chr3g0144271 35.252 139 82 3 7 137 23 161 1.16e-16 77.4
Msa0378130 MtrunA17_Chr8g0345671 32.515 163 79 7 7 156 11 155 1.20e-16 77.0
Msa0378130 MtrunA17_Chr5g0405211 28.221 163 92 6 7 158 8 156 1.24e-16 77.0
Msa0378130 MtrunA17_Chr7g0217711 33.333 129 79 2 5 127 17 144 4.71e-16 72.8
Msa0378130 MtrunA17_Chr8g0372121 30.534 131 79 4 7 127 6 134 4.75e-16 74.7
Msa0378130 MtrunA17_Chr1g0197361 30.000 160 90 6 9 158 10 157 6.68e-16 75.5
Msa0378130 MtrunA17_Chr4g0054791 30.357 168 96 5 5 162 4 160 8.19e-16 74.3
Msa0378130 MtrunA17_Chr6g0461661 33.077 130 80 2 5 127 16 145 9.08e-16 74.7
Msa0378130 MtrunA17_Chr4g0076731 30.128 156 92 3 9 158 56 200 2.22e-15 73.6
Msa0378130 MtrunA17_Chr3g0092671 30.435 161 88 7 9 158 7 154 2.52e-15 73.6
Msa0378130 MtrunA17_Chr3g0128111 31.210 157 90 4 10 158 45 191 4.84e-15 71.2
Msa0378130 MtrunA17_Chr3g0113031 37.500 96 54 2 76 171 15 104 7.41e-13 65.5
Msa0378130 MtrunA17_Chr8g0345711 30.714 140 85 5 7 136 12 149 1.01e-12 63.5
Msa0378130 MtrunA17_Chr1g0201021 30.709 127 79 2 9 127 21 146 1.08e-12 65.9
Msa0378130 MtrunA17_Chr7g0266701 27.059 170 102 6 7 161 4 166 1.78e-12 64.3
Msa0378130 MtrunA17_Chr3g0113001 34.711 121 62 5 60 172 17 128 5.73e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378130 AT5G64530.1 43.814 194 86 5 5 192 1 177 9.23e-42 139
Msa0378130 AT5G64530.2 50.806 124 54 3 5 127 1 118 9.76e-35 120
Msa0378130 AT1G61110.1 37.209 172 91 5 7 165 16 183 5.18e-29 110
Msa0378130 AT2G24430.2 40.000 160 77 5 7 158 16 164 4.60e-26 102
Msa0378130 AT2G24430.1 40.000 160 77 5 7 158 16 164 4.60e-26 102
Msa0378130 AT1G01720.1 36.364 165 88 6 1 157 1 156 1.09e-25 100
Msa0378130 AT5G07680.2 39.623 159 78 6 7 157 3 151 2.26e-25 100
Msa0378130 AT5G07680.1 39.623 159 78 6 7 157 17 165 2.77e-25 100
Msa0378130 AT3G04070.2 35.976 164 89 5 7 158 10 169 1.58e-24 99.0
Msa0378130 AT3G04060.1 37.805 164 83 6 3 157 16 169 1.87e-24 98.6
Msa0378130 AT1G69490.1 34.591 159 90 5 7 158 9 160 3.90e-24 96.3
Msa0378130 AT1G52890.1 33.750 160 90 3 5 158 12 161 4.28e-24 97.1
Msa0378130 AT3G18400.1 38.750 160 77 5 7 158 5 151 6.14e-24 96.7
Msa0378130 AT3G04070.1 34.270 178 89 6 7 158 10 185 1.10e-23 96.7
Msa0378130 AT1G77450.1 33.951 162 93 4 2 157 5 158 1.13e-23 94.7
Msa0378130 AT5G39610.1 35.366 164 84 4 5 158 18 169 1.60e-23 95.1
Msa0378130 AT4G27410.2 33.125 160 91 4 5 158 12 161 2.36e-23 94.7
Msa0378130 AT5G61430.1 39.130 161 78 7 7 158 16 165 3.57e-23 95.1
Msa0378130 AT5G18270.2 36.196 163 87 5 3 157 17 170 4.33e-23 94.7
Msa0378130 AT5G18270.1 35.583 163 88 5 3 157 17 170 8.00e-23 94.0
Msa0378130 AT3G15500.1 32.500 160 92 3 5 158 12 161 8.69e-23 93.6
Msa0378130 AT5G46590.1 34.177 158 88 3 7 156 6 155 1.38e-22 92.8
Msa0378130 AT5G22290.1 36.029 136 79 3 9 137 23 157 1.91e-22 93.2
Msa0378130 AT5G53950.1 37.349 166 86 6 2 158 12 168 4.75e-22 92.4
Msa0378130 AT3G15510.1 33.962 159 92 5 11 158 21 177 7.93e-22 91.7
Msa0378130 AT5G08790.1 31.361 169 104 4 1 163 1 163 9.04e-22 90.5
Msa0378130 AT4G10350.1 31.000 200 112 7 7 191 9 197 1.08e-21 91.3
Msa0378130 AT3G61910.1 32.571 175 99 6 6 163 10 182 1.27e-21 90.9
Msa0378130 AT5G63790.1 32.749 171 99 5 1 163 44 206 3.05e-21 89.4
Msa0378130 AT3G10500.1 33.333 165 92 4 2 158 4 158 3.50e-21 90.9
Msa0378130 AT5G63790.2 32.749 171 99 5 1 163 54 216 3.98e-21 89.4
Msa0378130 AT1G76420.1 37.423 163 75 7 7 157 22 169 5.73e-21 89.0
Msa0378130 AT3G44290.2 34.848 132 78 3 9 133 16 146 9.49e-21 86.7
Msa0378130 AT1G79580.3 31.138 167 92 5 2 158 12 165 1.11e-20 88.6
Msa0378130 AT1G79580.5 31.138 167 92 5 2 158 12 165 1.11e-20 88.6
Msa0378130 AT1G79580.4 31.138 167 92 5 2 158 12 165 1.11e-20 88.6
Msa0378130 AT1G79580.2 31.138 167 92 5 2 158 12 165 1.11e-20 88.6
Msa0378130 AT1G79580.1 31.138 167 92 5 2 158 12 165 1.11e-20 88.6
Msa0378130 AT2G33480.1 34.783 161 84 6 4 157 12 158 1.14e-20 87.0
Msa0378130 AT5G46590.2 36.154 130 75 2 7 128 6 135 1.53e-20 87.0
Msa0378130 AT3G12977.1 31.098 164 98 4 5 162 16 170 1.83e-20 86.7
Msa0378130 AT3G17730.1 32.099 162 92 4 5 158 4 155 2.08e-20 85.9
Msa0378130 AT2G46770.1 30.814 172 104 6 6 164 15 184 2.50e-20 87.8
Msa0378130 AT4G27410.3 32.203 177 87 6 5 158 12 178 3.17e-20 86.7
Msa0378130 AT5G17260.1 32.716 162 92 3 5 158 4 156 3.62e-20 87.8
Msa0378130 AT5G04410.1 32.727 165 93 4 2 158 4 158 3.74e-20 88.2
Msa0378130 AT3G44290.1 34.848 132 78 3 9 133 16 146 4.40e-20 86.7
Msa0378130 AT5G13180.1 32.927 164 84 6 4 157 11 158 8.03e-20 84.7
Msa0378130 AT3G15170.1 35.669 157 87 4 7 156 20 169 9.56e-20 85.5
Msa0378130 AT1G33280.1 31.138 167 92 5 7 164 8 160 1.50e-19 84.7
Msa0378130 AT2G33480.2 34.161 161 83 6 4 157 12 156 1.72e-19 84.0
Msa0378130 AT4G35580.1 31.633 196 100 6 7 183 9 189 2.45e-19 85.5
Msa0378130 AT3G29035.1 40.458 131 67 4 5 127 22 149 2.49e-19 84.3
Msa0378130 AT4G35580.2 31.633 196 100 6 7 183 9 189 3.57e-19 85.1
Msa0378130 AT4G35580.3 31.633 196 100 6 7 183 9 189 3.70e-19 85.1
Msa0378130 AT1G32510.1 30.488 164 92 3 7 156 6 161 6.90e-19 82.8
Msa0378130 AT1G56010.2 31.677 161 94 5 5 157 17 169 7.43e-19 83.2
Msa0378130 AT1G65910.1 32.716 162 91 4 5 158 4 155 9.29e-19 84.0
Msa0378130 AT1G32770.1 30.120 166 99 5 6 158 15 176 1.18e-18 82.8
Msa0378130 AT3G03200.1 30.864 162 95 3 5 158 4 156 1.45e-18 83.2
Msa0378130 AT2G02450.1 28.421 190 115 3 9 188 53 231 2.07e-18 82.4
Msa0378130 AT1G12260.2 29.762 168 95 5 1 158 1 155 2.52e-18 82.0
Msa0378130 AT5G62380.2 29.825 171 91 7 1 158 1 155 2.57e-18 82.0
Msa0378130 AT5G62380.1 29.825 171 91 7 1 158 1 155 2.57e-18 82.0
Msa0378130 AT2G02450.2 32.051 156 89 2 9 158 53 197 2.95e-18 82.0
Msa0378130 AT2G43000.1 28.205 156 97 3 9 158 20 166 3.53e-18 80.5
Msa0378130 AT4G17980.2 32.704 159 91 4 7 156 6 157 3.87e-18 80.9
Msa0378130 AT4G17980.1 32.727 165 93 5 7 162 6 161 4.67e-18 80.1
Msa0378130 AT1G12260.1 29.762 168 95 5 1 158 1 155 4.73e-18 81.6
Msa0378130 AT1G52880.1 31.138 167 85 6 11 158 21 176 6.75e-18 80.5
Msa0378130 AT5G24590.2 30.061 163 97 4 4 158 10 163 8.63e-18 80.9
Msa0378130 AT1G33060.2 32.704 159 89 4 7 157 24 172 1.93e-17 80.1
Msa0378130 AT1G33060.1 32.704 159 89 4 7 157 24 172 2.12e-17 80.1
Msa0378130 AT2G18060.3 29.012 162 92 6 7 158 9 157 2.70e-17 79.3
Msa0378130 AT2G18060.1 29.012 162 92 6 7 158 9 157 2.70e-17 79.3
Msa0378130 AT2G27300.1 33.588 131 79 3 4 127 11 140 2.83e-17 79.0
Msa0378130 AT5G22380.1 31.361 169 95 5 1 157 1 160 4.50e-17 77.0
Msa0378130 AT4G36160.1 28.395 162 93 5 7 158 10 158 4.69e-17 78.6
Msa0378130 AT4G36160.3 28.395 162 93 5 7 158 10 158 4.69e-17 78.6
Msa0378130 AT4G36160.2 28.395 162 93 5 7 158 14 162 5.23e-17 78.6
Msa0378130 AT4G28530.1 28.571 175 89 4 6 157 9 170 9.09e-17 77.8
Msa0378130 AT1G62700.1 30.769 169 92 7 1 158 1 155 1.12e-16 77.8
Msa0378130 AT1G62700.2 30.769 169 92 7 1 158 1 155 1.12e-16 77.8
Msa0378130 AT1G26870.1 30.247 162 100 4 7 158 16 174 1.39e-16 77.4
Msa0378130 AT1G71930.2 27.647 170 98 7 1 158 1 157 3.97e-16 75.5
Msa0378130 AT1G71930.1 27.647 170 98 7 1 158 1 157 3.97e-16 75.5
Msa0378130 AT1G54330.1 29.143 175 97 4 5 168 4 162 4.48e-16 75.1
Msa0378130 AT5G39820.1 28.177 181 109 6 9 169 22 201 4.59e-16 75.5
Msa0378130 AT3G10480.2 32.759 174 97 6 7 172 27 188 7.49e-16 75.5
Msa0378130 AT3G12910.1 26.036 169 110 6 3 158 18 184 8.75e-16 74.3
Msa0378130 AT5G66300.1 27.778 162 95 6 7 158 12 161 1.96e-15 73.2
Msa0378130 AT5G04395.1 33.103 145 76 4 7 130 28 172 2.59e-15 71.2
Msa0378130 AT1G32870.1 36.220 127 74 2 7 127 10 135 2.62e-15 73.9
Msa0378130 AT1G32870.2 36.220 127 74 2 7 127 10 135 2.68e-15 73.9
Msa0378130 AT1G32870.3 36.220 127 74 2 7 127 46 171 3.59e-15 73.6
Msa0378130 AT3G49530.2 28.571 161 96 5 7 158 13 163 7.45e-15 72.4
Msa0378130 AT3G49530.1 28.834 163 93 5 7 158 13 163 1.01e-14 72.4
Msa0378130 AT3G10480.1 32.571 175 97 7 7 172 27 189 1.25e-14 72.0
Msa0378130 AT5G14000.1 32.934 167 79 7 5 158 13 159 1.77e-14 69.3
Msa0378130 AT3G10490.1 32.000 175 98 7 7 172 27 189 1.82e-14 70.1
Msa0378130 AT1G02230.1 32.090 134 76 4 8 129 4 134 2.43e-14 70.9
Msa0378130 AT1G34190.1 32.283 127 77 2 9 127 18 143 2.43e-14 71.2
Msa0378130 AT5G64060.1 28.235 170 103 4 7 168 6 164 9.89e-14 68.9
Msa0378130 AT3G10490.2 32.000 175 98 7 7 172 27 189 2.66e-13 68.2
Msa0378130 AT5G14000.2 33.099 142 80 5 5 137 13 148 3.38e-13 65.1
Msa0378130 AT2G17040.1 32.143 140 83 4 1 129 1 139 6.01e-13 66.2
Msa0378130 AT3G44350.2 28.395 162 91 6 10 157 8 158 6.96e-13 65.5
Msa0378130 AT1G34180.3 31.496 127 78 2 9 127 18 143 1.47e-12 65.9
Msa0378130 AT1G34180.1 31.496 127 78 2 9 127 18 143 1.50e-12 65.9
Msa0378130 AT3G44350.1 29.412 136 79 4 10 131 8 140 8.10e-12 61.2
Msa0378130 AT5G09330.5 27.879 165 99 5 5 160 4 157 9.35e-12 63.5
Msa0378130 AT5G09330.2 27.879 165 99 5 5 160 4 157 9.35e-12 63.5
Msa0378130 AT5G09330.4 27.879 165 99 5 5 160 4 157 9.35e-12 63.5
Msa0378130 AT5G09330.3 27.879 165 99 5 5 160 4 157 9.35e-12 63.5
Msa0378130 AT5G09330.1 27.879 165 99 5 5 160 4 157 9.35e-12 63.5
Msa0378130 AT5G61430.2 36.111 108 50 6 60 158 5 102 8.54e-11 60.1

Find 73 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCTTCATTCCCACTTTC+TGG 0.138453 3_1:-78832484 None:intergenic
AGGATTTAATTTAATAATTA+TGG 0.149116 3_1:-78833232 None:intergenic
AATAAATCCAGTACCGAAAA+TGG 0.244913 3_1:+78832413 Msa0378130:CDS
CGGAGGAAAGGAAAATTTAA+AGG 0.270673 3_1:-78833252 None:intergenic
ATTTAATAATTATGGTATAT+AGG 0.287293 3_1:-78833224 None:intergenic
ATTCGCCAATGTGGAATAAT+AGG 0.293651 3_1:-78832508 None:intergenic
CTTGTTCCTTGGGAATTAAA+TGG 0.298684 3_1:+78831969 Msa0378130:CDS
CCAGTACCGAAAATGGATAT+TGG 0.313420 3_1:+78832420 Msa0378130:CDS
ATCTGTCTCTACTTGTTCCT+TGG 0.327451 3_1:+78831958 Msa0378130:CDS
AGTAGTTATATGTATGCATT+AGG 0.340471 3_1:+78832952 Msa0378130:three_prime_UTR
AATGGATATTGGGAGGAAAT+TGG 0.352799 3_1:+78832431 Msa0378130:CDS
TCTGTCTCTACTTGTTCCTT+GGG 0.353376 3_1:+78831959 Msa0378130:CDS
TGGTCAGTGCCTGAAAATAT+TGG 0.355149 3_1:-78832464 None:intergenic
GAATATCATATTTGCTCCTC+TGG 0.364606 3_1:+78832566 Msa0378130:CDS
TCTAGATCAGGGATGAAGTT+TGG 0.373168 3_1:-78831936 None:intergenic
AATTCAAATATATCCTTGAA+TGG 0.375129 3_1:+78831812 Msa0378130:exon
TGGCATGACAGGGTGAAAAT+TGG 0.385812 3_1:+78832758 Msa0378130:intron
GGGAGGGTGAACTTGCAATA+TGG 0.391228 3_1:+78833065 Msa0378130:three_prime_UTR
GATATTGTCAAGCTTCCTCC+TGG 0.398901 3_1:+78831837 Msa0378130:CDS
TACCTATTGTTTCAAAAGCC+AGG 0.411047 3_1:+78833044 Msa0378130:three_prime_UTR
CAGTACCGAAAATGGATATT+GGG 0.414415 3_1:+78832421 Msa0378130:CDS
CAAAGTACTGTTTCATATCA+TGG 0.427460 3_1:+78832596 Msa0378130:CDS
CACAAAGTTCTGAAACAAGT+TGG 0.433370 3_1:+78832534 Msa0378130:CDS
CTTTAATTTGCATGTGATGA+TGG 0.444684 3_1:+78833002 Msa0378130:three_prime_UTR
TATTGCAAGTTCACCCTCCC+TGG 0.448564 3_1:-78833062 None:intergenic
TGTTAGTTGTAATTATACTT+TGG 0.451744 3_1:-78831784 None:intergenic
AGTAGAGACAGATCTAGATC+AGG 0.454456 3_1:-78831948 None:intergenic
AGGATAAGTTCTTCATCTGT+TGG 0.457202 3_1:-78831873 None:intergenic
ACAGTGGAACTGATCTTTCA+TGG 0.461699 3_1:+78832869 Msa0378130:CDS
ATTCAAATATATCCTTGAAT+GGG 0.462883 3_1:+78831813 Msa0378130:exon
ATAATTATGGTATATAGGAC+TGG 0.470174 3_1:-78833219 None:intergenic
TTGACAATATCTCCCATTCA+AGG 0.473122 3_1:-78831825 None:intergenic
CAGCTTCTATGAGTGATATC+CGG 0.477564 3_1:-78833272 None:intergenic
TAATTATGGTATATAGGACT+GGG 0.497115 3_1:-78833218 None:intergenic
AGGGTGAAAATTGGAGCGAA+TGG 0.500867 3_1:+78832767 Msa0378130:intron
GGGTGAAAATTGGAGCGAAT+GGG 0.512033 3_1:+78832768 Msa0378130:intron
ACAAAGTTCTGAAACAAGTT+GGG 0.512054 3_1:+78832535 Msa0378130:CDS
TCTAAATTAGATGAAATGCT+TGG 0.519517 3_1:-78833194 None:intergenic
AGATGAAATGCTTGGAAGGT+GGG 0.524433 3_1:-78833186 None:intergenic
TTCATATCATGGTGATAAAG+TGG 0.528044 3_1:+78832607 Msa0378130:CDS
TTCAGGCACTGACCAGAAAG+TGG 0.528880 3_1:+78832472 Msa0378130:CDS
ACCTATTGTTTCAAAAGCCA+GGG 0.536433 3_1:+78833045 Msa0378130:three_prime_UTR
ATATTGTCAAGCTTCCTCCT+GGG 0.550955 3_1:+78831838 Msa0378130:CDS
AATTAGATGAAATGCTTGGA+AGG 0.552950 3_1:-78833190 None:intergenic
GGAGTACCATTTAATTCCCA+AGG 0.563304 3_1:-78831975 None:intergenic
TAGATGAAATGCTTGGAAGG+TGG 0.568160 3_1:-78833187 None:intergenic
CCTTAGAATAGAGAAAATGA+AGG 0.569373 3_1:-78831893 None:intergenic
CTATTTCTTCGCCAAAGTGA+AGG 0.570044 3_1:+78832388 Msa0378130:CDS
TAGTGATTTACACCTTCTTG+AGG 0.571144 3_1:-78832829 None:intergenic
GTAGAGACAGATCTAGATCA+GGG 0.575051 3_1:-78831947 None:intergenic
ATGAGTGATATCCGGAGGAA+AGG 0.576273 3_1:-78833264 None:intergenic
AAGAACATGTATCCTCAAGA+AGG 0.582925 3_1:+78832817 Msa0378130:CDS
CTTGGAGTTGGATGATGACA+TGG 0.591409 3_1:+78832911 Msa0378130:CDS
TCAGGCACTGACCAGAAAGT+GGG 0.598459 3_1:+78832473 Msa0378130:CDS
ACATTGTCTCAAAGACATGA+AGG 0.601677 3_1:+78833118 Msa0378130:three_prime_UTR
TACATATAACTACTGAGGCA+TGG 0.622199 3_1:-78832943 None:intergenic
TACCGAAAATGGATATTGGG+AGG 0.624892 3_1:+78832424 Msa0378130:CDS
ATTGTTTCAAAAGCCAGGGA+GGG 0.633726 3_1:+78833049 Msa0378130:three_prime_UTR
TTTGTGCTAATTCGCCAATG+TGG 0.638216 3_1:-78832517 None:intergenic
ACAGATAAGGCATTGTGCGG+TGG 0.648627 3_1:+78832353 Msa0378130:intron
TATTGTTTCAAAAGCCAGGG+AGG 0.656497 3_1:+78833048 Msa0378130:three_prime_UTR
ATGCATACATATAACTACTG+AGG 0.671624 3_1:-78832948 None:intergenic
AAGTACCTATTATTCCACAT+TGG 0.679443 3_1:+78832503 Msa0378130:CDS
GTTGGAGAGAAGACAAACCC+AGG 0.681756 3_1:-78831855 None:intergenic
CTTCTATGAGTGATATCCGG+AGG 0.684625 3_1:-78833269 None:intergenic
TTGGAAGGTGGGACATAGTG+TGG 0.689174 3_1:-78833175 None:intergenic
TGTACAGATAAGGCATTGTG+CGG 0.708392 3_1:+78832350 Msa0378130:intron
GGAGAGAAGACAAACCCAGG+AGG 0.709023 3_1:-78831852 None:intergenic
AGTACTTTGATCAAATCCAG+AGG 0.713491 3_1:-78832582 None:intergenic
GGAGTTGGATGATGACATGG+AGG 0.715484 3_1:+78832914 Msa0378130:CDS
AATTATGGTATATAGGACTG+GGG 0.719616 3_1:-78833217 None:intergenic
AACAGCGATGATGATGACAG+TGG 0.723595 3_1:+78832853 Msa0378130:CDS
GAGTTGGATGATGACATGGA+GGG 0.737812 3_1:+78832915 Msa0378130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAATATTGAAGAAA+TGG - chr3_1:78831999-78832018 None:intergenic 10.0%
!! ATTTAATAATTATGGTATAT+AGG - chr3_1:78833227-78833246 None:intergenic 10.0%
!!! AGGATTTAATTTAATAATTA+TGG - chr3_1:78833235-78833254 None:intergenic 10.0%
!! AATTAAAAATATTGAAGAAA+TGG - chr3_1:78831999-78832018 None:intergenic 10.0%
!! ATTTAATAATTATGGTATAT+AGG - chr3_1:78833227-78833246 None:intergenic 10.0%
!!! AGGATTTAATTTAATAATTA+TGG - chr3_1:78833235-78833254 None:intergenic 10.0%
!! CTATAGTTTAATTAATTGAA+TGG + chr3_1:78832724-78832743 Msa0378130:intron 15.0%
!! CTATAGTTTAATTAATTGAA+TGG + chr3_1:78832724-78832743 Msa0378130:intron 15.0%
!! TGTTAGTTGTAATTATACTT+TGG - chr3_1:78831787-78831806 None:intergenic 20.0%
!! AATTCAAATATATCCTTGAA+TGG + chr3_1:78831812-78831831 Msa0378130:exon 20.0%
!! ATTCAAATATATCCTTGAAT+GGG + chr3_1:78831813-78831832 Msa0378130:exon 20.0%
!! TTATTTAACATGTACAGATA+AGG + chr3_1:78832340-78832359 Msa0378130:intron 20.0%
!! TATAGATATATAGCTAACTA+GGG - chr3_1:78832709-78832728 None:intergenic 20.0%
!!! AGACAATGTTTCTTTTTATA+TGG - chr3_1:78833107-78833126 None:intergenic 20.0%
!! TGTTAGTTGTAATTATACTT+TGG - chr3_1:78831787-78831806 None:intergenic 20.0%
!! AATTCAAATATATCCTTGAA+TGG + chr3_1:78831812-78831831 Msa0378130:exon 20.0%
!! ATTCAAATATATCCTTGAAT+GGG + chr3_1:78831813-78831832 Msa0378130:exon 20.0%
!! TTATTTAACATGTACAGATA+AGG + chr3_1:78832340-78832359 Msa0378130:intron 20.0%
!! TATAGATATATAGCTAACTA+GGG - chr3_1:78832709-78832728 None:intergenic 20.0%
!!! AGACAATGTTTCTTTTTATA+TGG - chr3_1:78833107-78833126 None:intergenic 20.0%
! TCATCGAAAGTAGTAAAATT+TGG - chr3_1:78832047-78832066 None:intergenic 25.0%
! AGAAAGAAAAAAAAAAGACC+AGG + chr3_1:78832115-78832134 Msa0378130:intron 25.0%
! GATACATAACATAAGAGATA+TGG - chr3_1:78832195-78832214 None:intergenic 25.0%
! CTATAGATATATAGCTAACT+AGG - chr3_1:78832710-78832729 None:intergenic 25.0%
! AGTAGTTATATGTATGCATT+AGG + chr3_1:78832952-78832971 Msa0378130:three_prime_UTR 25.0%
! TCTAAATTAGATGAAATGCT+TGG - chr3_1:78833197-78833216 None:intergenic 25.0%
! TAATTATGGTATATAGGACT+GGG - chr3_1:78833221-78833240 None:intergenic 25.0%
! ATAATTATGGTATATAGGAC+TGG - chr3_1:78833222-78833241 None:intergenic 25.0%
! TCATCGAAAGTAGTAAAATT+TGG - chr3_1:78832047-78832066 None:intergenic 25.0%
! AGAAAGAAAAAAAAAAGACC+AGG + chr3_1:78832115-78832134 Msa0378130:intron 25.0%
! GATACATAACATAAGAGATA+TGG - chr3_1:78832195-78832214 None:intergenic 25.0%
! CTATAGATATATAGCTAACT+AGG - chr3_1:78832710-78832729 None:intergenic 25.0%
! AGTAGTTATATGTATGCATT+AGG + chr3_1:78832952-78832971 Msa0378130:three_prime_UTR 25.0%
! TCTAAATTAGATGAAATGCT+TGG - chr3_1:78833197-78833216 None:intergenic 25.0%
! TAATTATGGTATATAGGACT+GGG - chr3_1:78833221-78833240 None:intergenic 25.0%
! ATAATTATGGTATATAGGAC+TGG - chr3_1:78833222-78833241 None:intergenic 25.0%
CCTTAGAATAGAGAAAATGA+AGG - chr3_1:78831896-78831915 None:intergenic 30.0%
! CCTTCATTTTCTCTATTCTA+AGG + chr3_1:78831893-78831912 Msa0378130:CDS 30.0%
! TGTAGTATAAGTTCTAATCC+TGG - chr3_1:78832136-78832155 None:intergenic 30.0%
TTCATCGAATATTCATGCAT+TGG - chr3_1:78832300-78832319 None:intergenic 30.0%
!! GGATTTATTTTCCTTCACTT+TGG - chr3_1:78832402-78832421 None:intergenic 30.0%
! AATAAATCCAGTACCGAAAA+TGG + chr3_1:78832413-78832432 Msa0378130:CDS 30.0%
! GTTACAGTACCAATATTTTC+AGG + chr3_1:78832455-78832474 Msa0378130:CDS 30.0%
AAGTACCTATTATTCCACAT+TGG + chr3_1:78832503-78832522 Msa0378130:CDS 30.0%
!! ACAAAGTTCTGAAACAAGTT+GGG + chr3_1:78832535-78832554 Msa0378130:CDS 30.0%
!! CAAAGTACTGTTTCATATCA+TGG + chr3_1:78832596-78832615 Msa0378130:CDS 30.0%
TTCATATCATGGTGATAAAG+TGG + chr3_1:78832607-78832626 Msa0378130:CDS 30.0%
ATGCATACATATAACTACTG+AGG - chr3_1:78832951-78832970 None:intergenic 30.0%
!! CTTTAATTTGCATGTGATGA+TGG + chr3_1:78833002-78833021 Msa0378130:three_prime_UTR 30.0%
AATTAGATGAAATGCTTGGA+AGG - chr3_1:78833193-78833212 None:intergenic 30.0%
AATTATGGTATATAGGACTG+GGG - chr3_1:78833220-78833239 None:intergenic 30.0%
! CTTTAAATTTTCCTTTCCTC+CGG + chr3_1:78833253-78833272 Msa0378130:three_prime_UTR 30.0%
CCTTAGAATAGAGAAAATGA+AGG - chr3_1:78831896-78831915 None:intergenic 30.0%
! CCTTCATTTTCTCTATTCTA+AGG + chr3_1:78831893-78831912 Msa0378130:CDS 30.0%
! TGTAGTATAAGTTCTAATCC+TGG - chr3_1:78832136-78832155 None:intergenic 30.0%
TTCATCGAATATTCATGCAT+TGG - chr3_1:78832300-78832319 None:intergenic 30.0%
!! GGATTTATTTTCCTTCACTT+TGG - chr3_1:78832402-78832421 None:intergenic 30.0%
! AATAAATCCAGTACCGAAAA+TGG + chr3_1:78832413-78832432 Msa0378130:CDS 30.0%
! GTTACAGTACCAATATTTTC+AGG + chr3_1:78832455-78832474 Msa0378130:CDS 30.0%
AAGTACCTATTATTCCACAT+TGG + chr3_1:78832503-78832522 Msa0378130:CDS 30.0%
!! ACAAAGTTCTGAAACAAGTT+GGG + chr3_1:78832535-78832554 Msa0378130:CDS 30.0%
!! CAAAGTACTGTTTCATATCA+TGG + chr3_1:78832596-78832615 Msa0378130:CDS 30.0%
TTCATATCATGGTGATAAAG+TGG + chr3_1:78832607-78832626 Msa0378130:CDS 30.0%
ATGCATACATATAACTACTG+AGG - chr3_1:78832951-78832970 None:intergenic 30.0%
!! CTTTAATTTGCATGTGATGA+TGG + chr3_1:78833002-78833021 Msa0378130:three_prime_UTR 30.0%
AATTAGATGAAATGCTTGGA+AGG - chr3_1:78833193-78833212 None:intergenic 30.0%
AATTATGGTATATAGGACTG+GGG - chr3_1:78833220-78833239 None:intergenic 30.0%
! CTTTAAATTTTCCTTTCCTC+CGG + chr3_1:78833253-78833272 Msa0378130:three_prime_UTR 30.0%
TTGACAATATCTCCCATTCA+AGG - chr3_1:78831828-78831847 None:intergenic 35.0%
AGGATAAGTTCTTCATCTGT+TGG - chr3_1:78831876-78831895 None:intergenic 35.0%
CTTGTTCCTTGGGAATTAAA+TGG + chr3_1:78831969-78831988 Msa0378130:CDS 35.0%
! TAGCTGTGTGTATGTGATTT+TGG - chr3_1:78832237-78832256 None:intergenic 35.0%
! CAGTACCGAAAATGGATATT+GGG + chr3_1:78832421-78832440 Msa0378130:CDS 35.0%
! TTCCTCCCAATATCCATTTT+CGG - chr3_1:78832429-78832448 None:intergenic 35.0%
AATGGATATTGGGAGGAAAT+TGG + chr3_1:78832431-78832450 Msa0378130:CDS 35.0%
ATTCGCCAATGTGGAATAAT+AGG - chr3_1:78832511-78832530 None:intergenic 35.0%
!! CACAAAGTTCTGAAACAAGT+TGG + chr3_1:78832534-78832553 Msa0378130:CDS 35.0%
GAATATCATATTTGCTCCTC+TGG + chr3_1:78832566-78832585 Msa0378130:CDS 35.0%
AGTACTTTGATCAAATCCAG+AGG - chr3_1:78832585-78832604 None:intergenic 35.0%
AAGAACATGTATCCTCAAGA+AGG + chr3_1:78832817-78832836 Msa0378130:CDS 35.0%
TAGTGATTTACACCTTCTTG+AGG - chr3_1:78832832-78832851 None:intergenic 35.0%
! AAGACCAAGTTTTTCTGTCT+TGG + chr3_1:78832893-78832912 Msa0378130:CDS 35.0%
AACTCCAAGACAGAAAAACT+TGG - chr3_1:78832900-78832919 None:intergenic 35.0%
! AAGTTTTTCTGTCTTGGAGT+TGG + chr3_1:78832899-78832918 Msa0378130:CDS 35.0%
TACATATAACTACTGAGGCA+TGG - chr3_1:78832946-78832965 None:intergenic 35.0%
TACCTATTGTTTCAAAAGCC+AGG + chr3_1:78833044-78833063 Msa0378130:three_prime_UTR 35.0%
ACCTATTGTTTCAAAAGCCA+GGG + chr3_1:78833045-78833064 Msa0378130:three_prime_UTR 35.0%
ACATTGTCTCAAAGACATGA+AGG + chr3_1:78833118-78833137 Msa0378130:three_prime_UTR 35.0%
CGGAGGAAAGGAAAATTTAA+AGG - chr3_1:78833255-78833274 None:intergenic 35.0%
TTGACAATATCTCCCATTCA+AGG - chr3_1:78831828-78831847 None:intergenic 35.0%
AGGATAAGTTCTTCATCTGT+TGG - chr3_1:78831876-78831895 None:intergenic 35.0%
CTTGTTCCTTGGGAATTAAA+TGG + chr3_1:78831969-78831988 Msa0378130:CDS 35.0%
! TAGCTGTGTGTATGTGATTT+TGG - chr3_1:78832237-78832256 None:intergenic 35.0%
! CAGTACCGAAAATGGATATT+GGG + chr3_1:78832421-78832440 Msa0378130:CDS 35.0%
! TTCCTCCCAATATCCATTTT+CGG - chr3_1:78832429-78832448 None:intergenic 35.0%
AATGGATATTGGGAGGAAAT+TGG + chr3_1:78832431-78832450 Msa0378130:CDS 35.0%
ATTCGCCAATGTGGAATAAT+AGG - chr3_1:78832511-78832530 None:intergenic 35.0%
!! CACAAAGTTCTGAAACAAGT+TGG + chr3_1:78832534-78832553 Msa0378130:CDS 35.0%
GAATATCATATTTGCTCCTC+TGG + chr3_1:78832566-78832585 Msa0378130:CDS 35.0%
AGTACTTTGATCAAATCCAG+AGG - chr3_1:78832585-78832604 None:intergenic 35.0%
AAGAACATGTATCCTCAAGA+AGG + chr3_1:78832817-78832836 Msa0378130:CDS 35.0%
TAGTGATTTACACCTTCTTG+AGG - chr3_1:78832832-78832851 None:intergenic 35.0%
! AAGACCAAGTTTTTCTGTCT+TGG + chr3_1:78832893-78832912 Msa0378130:CDS 35.0%
AACTCCAAGACAGAAAAACT+TGG - chr3_1:78832900-78832919 None:intergenic 35.0%
! AAGTTTTTCTGTCTTGGAGT+TGG + chr3_1:78832899-78832918 Msa0378130:CDS 35.0%
TACATATAACTACTGAGGCA+TGG - chr3_1:78832946-78832965 None:intergenic 35.0%
TACCTATTGTTTCAAAAGCC+AGG + chr3_1:78833044-78833063 Msa0378130:three_prime_UTR 35.0%
ACCTATTGTTTCAAAAGCCA+GGG + chr3_1:78833045-78833064 Msa0378130:three_prime_UTR 35.0%
ACATTGTCTCAAAGACATGA+AGG + chr3_1:78833118-78833137 Msa0378130:three_prime_UTR 35.0%
CGGAGGAAAGGAAAATTTAA+AGG - chr3_1:78833255-78833274 None:intergenic 35.0%
ATATTGTCAAGCTTCCTCCT+GGG + chr3_1:78831838-78831857 Msa0378130:CDS 40.0%
TCTAGATCAGGGATGAAGTT+TGG - chr3_1:78831939-78831958 None:intergenic 40.0%
GTAGAGACAGATCTAGATCA+GGG - chr3_1:78831950-78831969 None:intergenic 40.0%
AGTAGAGACAGATCTAGATC+AGG - chr3_1:78831951-78831970 None:intergenic 40.0%
ATCTGTCTCTACTTGTTCCT+TGG + chr3_1:78831958-78831977 Msa0378130:CDS 40.0%
TCTGTCTCTACTTGTTCCTT+GGG + chr3_1:78831959-78831978 Msa0378130:CDS 40.0%
! GGAGTACCATTTAATTCCCA+AGG - chr3_1:78831978-78831997 None:intergenic 40.0%
CATGCATTGGACATGTGTAT+TGG - chr3_1:78832287-78832306 None:intergenic 40.0%
!! TGTACAGATAAGGCATTGTG+CGG + chr3_1:78832350-78832369 Msa0378130:intron 40.0%
! CTATTTCTTCGCCAAAGTGA+AGG + chr3_1:78832388-78832407 Msa0378130:CDS 40.0%
! CCAATATCCATTTTCGGTAC+TGG - chr3_1:78832423-78832442 None:intergenic 40.0%
! CCAGTACCGAAAATGGATAT+TGG + chr3_1:78832420-78832439 Msa0378130:CDS 40.0%
TACCGAAAATGGATATTGGG+AGG + chr3_1:78832424-78832443 Msa0378130:CDS 40.0%
TGGTCAGTGCCTGAAAATAT+TGG - chr3_1:78832467-78832486 None:intergenic 40.0%
ACTTCTTCATTCCCACTTTC+TGG - chr3_1:78832487-78832506 None:intergenic 40.0%
TTTGTGCTAATTCGCCAATG+TGG - chr3_1:78832520-78832539 None:intergenic 40.0%
ATTGAATGGTGCATCATGCA+TGG + chr3_1:78832738-78832757 Msa0378130:intron 40.0%
ACAGTGGAACTGATCTTTCA+TGG + chr3_1:78832869-78832888 Msa0378130:CDS 40.0%
!!! TCCCTGGCTTTTGAAACAAT+AGG - chr3_1:78833049-78833068 None:intergenic 40.0%
TATTGTTTCAAAAGCCAGGG+AGG + chr3_1:78833048-78833067 Msa0378130:three_prime_UTR 40.0%
ATTGTTTCAAAAGCCAGGGA+GGG + chr3_1:78833049-78833068 Msa0378130:three_prime_UTR 40.0%
AGATGAAATGCTTGGAAGGT+GGG - chr3_1:78833189-78833208 None:intergenic 40.0%
TAGATGAAATGCTTGGAAGG+TGG - chr3_1:78833190-78833209 None:intergenic 40.0%
ATATTGTCAAGCTTCCTCCT+GGG + chr3_1:78831838-78831857 Msa0378130:CDS 40.0%
TCTAGATCAGGGATGAAGTT+TGG - chr3_1:78831939-78831958 None:intergenic 40.0%
GTAGAGACAGATCTAGATCA+GGG - chr3_1:78831950-78831969 None:intergenic 40.0%
AGTAGAGACAGATCTAGATC+AGG - chr3_1:78831951-78831970 None:intergenic 40.0%
ATCTGTCTCTACTTGTTCCT+TGG + chr3_1:78831958-78831977 Msa0378130:CDS 40.0%
TCTGTCTCTACTTGTTCCTT+GGG + chr3_1:78831959-78831978 Msa0378130:CDS 40.0%
! GGAGTACCATTTAATTCCCA+AGG - chr3_1:78831978-78831997 None:intergenic 40.0%
CATGCATTGGACATGTGTAT+TGG - chr3_1:78832287-78832306 None:intergenic 40.0%
!! TGTACAGATAAGGCATTGTG+CGG + chr3_1:78832350-78832369 Msa0378130:intron 40.0%
! CTATTTCTTCGCCAAAGTGA+AGG + chr3_1:78832388-78832407 Msa0378130:CDS 40.0%
! CCAATATCCATTTTCGGTAC+TGG - chr3_1:78832423-78832442 None:intergenic 40.0%
! CCAGTACCGAAAATGGATAT+TGG + chr3_1:78832420-78832439 Msa0378130:CDS 40.0%
TACCGAAAATGGATATTGGG+AGG + chr3_1:78832424-78832443 Msa0378130:CDS 40.0%
TGGTCAGTGCCTGAAAATAT+TGG - chr3_1:78832467-78832486 None:intergenic 40.0%
ACTTCTTCATTCCCACTTTC+TGG - chr3_1:78832487-78832506 None:intergenic 40.0%
TTTGTGCTAATTCGCCAATG+TGG - chr3_1:78832520-78832539 None:intergenic 40.0%
ATTGAATGGTGCATCATGCA+TGG + chr3_1:78832738-78832757 Msa0378130:intron 40.0%
ACAGTGGAACTGATCTTTCA+TGG + chr3_1:78832869-78832888 Msa0378130:CDS 40.0%
!!! TCCCTGGCTTTTGAAACAAT+AGG - chr3_1:78833049-78833068 None:intergenic 40.0%
TATTGTTTCAAAAGCCAGGG+AGG + chr3_1:78833048-78833067 Msa0378130:three_prime_UTR 40.0%
ATTGTTTCAAAAGCCAGGGA+GGG + chr3_1:78833049-78833068 Msa0378130:three_prime_UTR 40.0%
AGATGAAATGCTTGGAAGGT+GGG - chr3_1:78833189-78833208 None:intergenic 40.0%
TAGATGAAATGCTTGGAAGG+TGG - chr3_1:78833190-78833209 None:intergenic 40.0%
GATATTGTCAAGCTTCCTCC+TGG + chr3_1:78831837-78831856 Msa0378130:CDS 45.0%
TGGCATGACAGGGTGAAAAT+TGG + chr3_1:78832758-78832777 Msa0378130:intron 45.0%
AGGGTGAAAATTGGAGCGAA+TGG + chr3_1:78832767-78832786 Msa0378130:intron 45.0%
GGGTGAAAATTGGAGCGAAT+GGG + chr3_1:78832768-78832787 Msa0378130:intron 45.0%
! AACAGCGATGATGATGACAG+TGG + chr3_1:78832853-78832872 Msa0378130:CDS 45.0%
CTTGGAGTTGGATGATGACA+TGG + chr3_1:78832911-78832930 Msa0378130:CDS 45.0%
GAGTTGGATGATGACATGGA+GGG + chr3_1:78832915-78832934 Msa0378130:CDS 45.0%
GATATTGTCAAGCTTCCTCC+TGG + chr3_1:78831837-78831856 Msa0378130:CDS 45.0%
TGGCATGACAGGGTGAAAAT+TGG + chr3_1:78832758-78832777 Msa0378130:intron 45.0%
AGGGTGAAAATTGGAGCGAA+TGG + chr3_1:78832767-78832786 Msa0378130:intron 45.0%
GGGTGAAAATTGGAGCGAAT+GGG + chr3_1:78832768-78832787 Msa0378130:intron 45.0%
! AACAGCGATGATGATGACAG+TGG + chr3_1:78832853-78832872 Msa0378130:CDS 45.0%
CTTGGAGTTGGATGATGACA+TGG + chr3_1:78832911-78832930 Msa0378130:CDS 45.0%
GAGTTGGATGATGACATGGA+GGG + chr3_1:78832915-78832934 Msa0378130:CDS 45.0%
!! AATTTAATATATTGAATATA+CGG + chr3_1:78832168-78832187 Msa0378130:intron 5.0%
!! AATTTAATATATTGAATATA+CGG + chr3_1:78832168-78832187 Msa0378130:intron 5.0%
GTTGGAGAGAAGACAAACCC+AGG - chr3_1:78831858-78831877 None:intergenic 50.0%
!! ACAGATAAGGCATTGTGCGG+TGG + chr3_1:78832353-78832372 Msa0378130:intron 50.0%
!! TTCAGGCACTGACCAGAAAG+TGG + chr3_1:78832472-78832491 Msa0378130:CDS 50.0%
!! TCAGGCACTGACCAGAAAGT+GGG + chr3_1:78832473-78832492 Msa0378130:CDS 50.0%
TGCATCATGCATGGCATGAC+AGG + chr3_1:78832747-78832766 Msa0378130:intron 50.0%
GCATCATGCATGGCATGACA+GGG + chr3_1:78832748-78832767 Msa0378130:intron 50.0%
GGAGTTGGATGATGACATGG+AGG + chr3_1:78832914-78832933 Msa0378130:CDS 50.0%
TATTGCAAGTTCACCCTCCC+TGG - chr3_1:78833065-78833084 None:intergenic 50.0%
GGGAGGGTGAACTTGCAATA+TGG + chr3_1:78833065-78833084 Msa0378130:three_prime_UTR 50.0%
TTGGAAGGTGGGACATAGTG+TGG - chr3_1:78833178-78833197 None:intergenic 50.0%
GTTGGAGAGAAGACAAACCC+AGG - chr3_1:78831858-78831877 None:intergenic 50.0%
!! ACAGATAAGGCATTGTGCGG+TGG + chr3_1:78832353-78832372 Msa0378130:intron 50.0%
!! TTCAGGCACTGACCAGAAAG+TGG + chr3_1:78832472-78832491 Msa0378130:CDS 50.0%
!! TCAGGCACTGACCAGAAAGT+GGG + chr3_1:78832473-78832492 Msa0378130:CDS 50.0%
TGCATCATGCATGGCATGAC+AGG + chr3_1:78832747-78832766 Msa0378130:intron 50.0%
GCATCATGCATGGCATGACA+GGG + chr3_1:78832748-78832767 Msa0378130:intron 50.0%
GGAGTTGGATGATGACATGG+AGG + chr3_1:78832914-78832933 Msa0378130:CDS 50.0%
TATTGCAAGTTCACCCTCCC+TGG - chr3_1:78833065-78833084 None:intergenic 50.0%
GGGAGGGTGAACTTGCAATA+TGG + chr3_1:78833065-78833084 Msa0378130:three_prime_UTR 50.0%
TTGGAAGGTGGGACATAGTG+TGG - chr3_1:78833178-78833197 None:intergenic 50.0%
GGAGAGAAGACAAACCCAGG+AGG - chr3_1:78831855-78831874 None:intergenic 55.0%
GGAGAGAAGACAAACCCAGG+AGG - chr3_1:78831855-78831874 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78831771 78833282 78831771 ID=Msa0378130;Name=Msa0378130
chr3_1 mRNA 78831771 78833282 78831771 ID=Msa0378130-mRNA-1;Parent=Msa0378130;Name=Msa0378130-mRNA-1;_AED=0.15;_eAED=0.15;_QI=60|1|1|1|1|1|3|340|201
chr3_1 exon 78831771 78831990 78831771 ID=Msa0378130-mRNA-1:exon:19122;Parent=Msa0378130-mRNA-1
chr3_1 exon 78832357 78832628 78832357 ID=Msa0378130-mRNA-1:exon:19123;Parent=Msa0378130-mRNA-1
chr3_1 exon 78832769 78833282 78832769 ID=Msa0378130-mRNA-1:exon:19124;Parent=Msa0378130-mRNA-1
chr3_1 five_prime_UTR 78831771 78831830 78831771 ID=Msa0378130-mRNA-1:five_prime_utr;Parent=Msa0378130-mRNA-1
chr3_1 CDS 78831831 78831990 78831831 ID=Msa0378130-mRNA-1:cds;Parent=Msa0378130-mRNA-1
chr3_1 CDS 78832357 78832628 78832357 ID=Msa0378130-mRNA-1:cds;Parent=Msa0378130-mRNA-1
chr3_1 CDS 78832769 78832942 78832769 ID=Msa0378130-mRNA-1:cds;Parent=Msa0378130-mRNA-1
chr3_1 three_prime_UTR 78832943 78833282 78832943 ID=Msa0378130-mRNA-1:three_prime_utr;Parent=Msa0378130-mRNA-1
Gene Sequence

>Msa0378130

ATGGGAGATATTGTCAAGCTTCCTCCTGGGTTTGTCTTCTCTCCAACAGATGAAGAACTTATCCTTCATTTTCTCTATTCTAAGGCTTCTCTTATTCAATCTCATCCAAACTTCATCCCTGATCTAGATCTGTCTCTACTTGTTCCTTGGGAATTAAATGATAAGGCATTGTGCGGTGGAAATGATGAATACTATTTCTTCGCCAAAGTGAAGGAAAATAAATCCAGTACCGAAAATGGATATTGGGAGGAAATTGGTGTTACAGTACCAATATTTTCAGGCACTGACCAGAAAGTGGGAATGAAGAAGTACCTATTATTCCACATTGGCGAATTAGCACAAAGTTCTGAAACAAGTTGGGTAATGCAAGAATATCATATTTGCTCCTCTGGATTTGATCAAAGTACTGTTTCATATCATGGTGATAAAGTGGGTGAAAATTGGAGCGAATGGGTTTTATGCAGAGTCTATGAGATTGATAAGAACATGTATCCTCAAGAAGGTGTAAATCACTACAACAGCGATGATGATGACAGTGGAACTGATCTTTCATGGCAAGACCAAGTTTTTCTGTCTTGGAGTTGGATGATGACATGGAGGGAATAA
Protein sequence

>Msa0378130

MGDIVKLPPGFVFSPTDEELILHFLYSKASLIQSHPNFIPDLDLSLLVPWELNDKALCGGNDEYYFFAKVKENKSSTENGYWEEIGVTVPIFSGTDQKVGMKKYLLFHIGELAQSSETSWVMQEYHICSSGFDQSTVSYHGDKVGENWSEWVLCRVYEIDKNMYPQEGVNHYNSDDDDSGTDLSWQDQVFLSWSWMMTWRE*