AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0660690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660690 MtrunA17_Chr3g0130321 92.568 148 10 1 1 147 1 148 2.98e-97 279
Msa0660690 MtrunA17_Chr8g0384351 66.667 126 31 5 5 130 8 122 2.05e-46 149
Msa0660690 MtrunA17_Chr4g0050701 49.180 122 59 3 7 127 11 130 9.65e-39 130
Msa0660690 MtrunA17_Chr5g0417791 38.346 133 73 3 5 130 1 131 2.98e-25 97.4
Msa0660690 MtrunA17_Chr2g0318101 40.458 131 67 4 7 128 15 143 1.53e-24 97.1
Msa0660690 MtrunA17_Chr4g0042561 38.028 142 76 4 6 140 8 144 4.34e-24 94.4
Msa0660690 MtrunA17_Chr4g0047841 40.152 132 68 4 7 129 15 144 1.11e-23 94.7
Msa0660690 MtrunA17_Chr7g0263931 37.063 143 79 4 5 138 9 149 3.75e-23 92.8
Msa0660690 MtrunA17_Chr1g0147421 41.026 156 69 8 7 148 27 173 7.48e-23 92.4
Msa0660690 MtrunA17_Chr4g0060931 42.636 129 63 4 7 127 17 142 1.01e-22 92.0
Msa0660690 MtrunA17_Chr2g0309331 33.835 133 77 3 5 127 8 139 1.03e-22 92.0
Msa0660690 MtrunA17_Chr3g0091921 39.695 131 72 2 3 127 12 141 1.58e-22 90.9
Msa0660690 MtrunA17_Chr2g0326361 37.500 136 68 6 7 130 14 144 6.86e-22 89.4
Msa0660690 MtrunA17_Chr3g0139331 43.182 132 64 4 7 129 11 140 7.22e-22 89.7
Msa0660690 MtrunA17_Chr3g0109821 38.168 131 72 3 5 127 4 133 7.97e-22 90.9
Msa0660690 MtrunA17_Chr6g0481091 36.641 131 74 3 5 127 4 133 1.03e-21 87.4
Msa0660690 MtrunA17_Chr3g0131911 34.307 137 79 3 4 131 11 145 2.19e-21 86.7
Msa0660690 MtrunA17_Chr3g0124761 34.307 137 76 4 1 128 1 132 4.64e-21 86.7
Msa0660690 MtrunA17_Chr7g0214071 37.037 135 71 3 5 130 13 142 5.22e-21 85.9
Msa0660690 MtrunA17_Chr6g0484441 41.085 129 65 4 7 127 5 130 6.52e-21 87.0
Msa0660690 MtrunA17_Chr2g0318081 34.848 132 79 2 5 130 14 144 1.40e-20 86.3
Msa0660690 MtrunA17_Chr2g0316971 38.281 128 72 2 7 127 23 150 1.86e-20 86.3
Msa0660690 MtrunA17_Chr8g0384721 32.593 135 83 2 1 129 1 133 2.11e-20 85.1
Msa0660690 MtrunA17_Chr5g0433781 37.405 131 73 3 5 127 4 133 7.00e-20 85.1
Msa0660690 MtrunA17_Chr5g0398971 31.618 136 84 2 1 127 1 136 7.15e-20 84.3
Msa0660690 MtrunA17_Chr4g0017921 33.846 130 76 3 7 127 8 136 2.33e-19 82.8
Msa0660690 MtrunA17_Chr7g0252971 35.252 139 72 5 5 127 6 142 2.60e-19 82.8
Msa0660690 MtrunA17_Chr8g0345731 34.000 150 87 4 7 144 24 173 3.21e-19 79.7
Msa0660690 MtrunA17_Chr8g0346001 33.588 131 77 3 6 127 14 143 3.27e-19 83.2
Msa0660690 MtrunA17_Chr8g0359921 32.903 155 97 2 5 153 12 165 4.78e-19 82.0
Msa0660690 MtrunA17_Chr7g0253011 34.586 133 78 2 4 127 14 146 5.38e-19 82.0
Msa0660690 MtrunA17_Chr8g0384201 37.879 132 73 3 4 127 3 133 6.40e-19 82.4
Msa0660690 MtrunA17_Chr2g0312321 35.385 130 73 4 5 127 9 134 9.31e-19 80.9
Msa0660690 MtrunA17_Chr2g0309891 32.836 134 81 2 5 130 4 136 1.78e-18 80.5
Msa0660690 MtrunA17_Chr1g0183741 32.308 130 81 2 5 127 8 137 2.24e-18 79.3
Msa0660690 MtrunA17_Chr3g0130101 36.765 136 75 5 1 127 1 134 3.22e-18 79.7
Msa0660690 MtrunA17_Chr8g0385991 28.378 148 97 3 4 144 11 156 3.74e-18 77.8
Msa0660690 MtrunA17_Chr3g0144271 35.252 139 82 3 7 137 23 161 4.94e-18 79.7
Msa0660690 MtrunA17_Chr8g0364791 37.121 132 74 3 4 127 3 133 6.80e-18 79.3
Msa0660690 MtrunA17_Chr7g0261411 33.083 133 76 3 5 127 8 137 9.89e-18 77.8
Msa0660690 MtrunA17_Chr4g0056541 33.824 136 80 3 1 127 1 135 1.14e-17 78.6
Msa0660690 MtrunA17_Chr5g0400461 32.847 137 78 2 5 127 4 140 1.30e-17 78.2
Msa0660690 MtrunA17_Chr1g0197351 36.220 127 72 3 7 125 42 167 1.49e-17 78.6
Msa0660690 MtrunA17_Chr3g0130731 30.534 131 83 2 5 129 5 133 2.11e-17 77.0
Msa0660690 MtrunA17_Chr4g0018391 31.387 137 82 4 1 127 1 135 3.05e-17 77.0
Msa0660690 MtrunA17_Chr8g0361731 32.653 147 86 4 9 145 16 159 3.12e-17 77.4
Msa0660690 MtrunA17_Chr8g0372121 30.534 131 79 4 7 127 6 134 4.14e-17 76.3
Msa0660690 MtrunA17_Chr7g0217711 33.333 129 79 2 5 127 17 144 4.77e-17 73.9
Msa0660690 MtrunA17_Chr6g0461661 33.077 130 80 2 5 127 16 145 8.24e-17 76.3
Msa0660690 MtrunA17_Chr2g0321631 31.126 151 86 6 1 138 1 146 1.54e-16 73.9
Msa0660690 MtrunA17_Chr8g0345671 34.266 143 77 5 7 136 11 149 1.92e-16 75.1
Msa0660690 MtrunA17_Chr6g0453451 34.615 130 74 3 6 127 19 145 1.92e-16 74.7
Msa0660690 MtrunA17_Chr5g0405211 29.771 131 80 4 7 127 8 136 1.96e-16 74.7
Msa0660690 MtrunA17_Chr3g0128151 36.220 127 72 2 7 125 22 147 2.14e-16 75.1
Msa0660690 MtrunA17_Chr5g0428991 35.156 128 74 3 6 125 24 150 2.22e-16 75.1
Msa0660690 MtrunA17_Chr4g0054791 28.750 160 103 3 5 154 4 162 2.32e-16 74.3
Msa0660690 MtrunA17_Chr6g0453131 31.496 127 81 1 7 127 15 141 2.47e-16 74.7
Msa0660690 MtrunA17_Chr1g0200561 30.597 134 81 4 7 130 19 150 2.56e-16 74.7
Msa0660690 MtrunA17_Chr2g0311651 31.469 143 84 4 9 139 24 164 5.31e-16 73.2
Msa0660690 MtrunA17_Chr2g0311661 30.282 142 87 3 9 139 23 163 7.27e-16 72.8
Msa0660690 MtrunA17_Chr5g0417001 33.588 131 74 4 9 129 16 143 7.50e-16 73.6
Msa0660690 MtrunA17_Chr4g0026141 32.117 137 80 4 1 126 1 135 1.55e-15 71.6
Msa0660690 MtrunA17_Chr4g0076731 32.000 125 79 1 9 127 56 180 2.60e-15 72.0
Msa0660690 MtrunA17_Chr3g0128111 33.600 125 74 2 10 126 45 168 2.70e-15 70.5
Msa0660690 MtrunA17_Chr7g0217721 32.558 129 80 2 5 127 17 144 2.94e-15 71.6
Msa0660690 MtrunA17_Chr5g0442771 27.481 131 87 2 9 131 20 150 4.99e-15 70.5
Msa0660690 MtrunA17_Chr1g0197361 30.935 139 84 5 9 137 10 146 6.29e-15 70.9
Msa0660690 MtrunA17_Chr3g0092671 32.308 130 74 5 9 127 7 133 1.32e-14 70.1
Msa0660690 MtrunA17_Chr8g0345691 32.168 143 80 5 7 136 12 150 1.43e-14 69.7
Msa0660690 MtrunA17_Chr1g0201021 30.709 127 79 2 9 127 21 146 7.35e-14 67.8
Msa0660690 MtrunA17_Chr8g0345711 30.714 140 85 5 7 136 12 149 1.26e-13 64.7
Msa0660690 MtrunA17_Chr8g0345741 31.250 112 65 4 37 139 22 130 2.54e-11 58.5
Msa0660690 MtrunA17_Chr7g0266701 27.612 134 79 4 7 125 4 134 8.20e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660690 AT5G64530.2 50.806 124 54 3 5 127 1 118 3.03e-36 123
Msa0660690 AT5G64530.1 50.806 124 54 3 5 127 1 118 7.01e-36 123
Msa0660690 AT1G61110.1 39.535 129 70 2 7 128 16 143 1.29e-25 99.8
Msa0660690 AT2G24430.2 43.182 132 64 4 7 129 16 145 8.33e-24 94.7
Msa0660690 AT2G24430.1 43.182 132 64 4 7 129 16 145 8.33e-24 94.7
Msa0660690 AT5G22290.1 36.029 136 79 3 9 137 23 157 1.07e-23 95.1
Msa0660690 AT1G01720.1 37.500 136 73 4 1 128 1 132 4.26e-23 92.4
Msa0660690 AT5G07680.2 41.860 129 64 4 7 127 3 128 1.78e-22 91.3
Msa0660690 AT5G07680.1 41.860 129 64 4 7 127 17 142 2.04e-22 91.3
Msa0660690 AT3G04060.1 39.098 133 71 3 3 127 16 146 2.70e-22 91.3
Msa0660690 AT5G46590.1 33.333 150 92 2 7 148 6 155 3.07e-22 90.5
Msa0660690 AT1G52890.1 37.209 129 74 2 5 127 12 139 4.74e-22 90.1
Msa0660690 AT3G44290.2 34.848 132 78 3 9 133 16 146 8.45e-22 87.8
Msa0660690 AT5G18270.2 38.346 133 72 3 3 127 17 147 8.50e-22 89.7
Msa0660690 AT5G39610.1 38.760 129 72 2 5 127 18 145 1.09e-21 88.6
Msa0660690 AT5G46590.2 34.783 138 82 2 7 136 6 143 1.45e-21 88.2
Msa0660690 AT5G18270.1 37.594 133 73 3 3 127 17 147 1.59e-21 89.0
Msa0660690 AT5G53950.1 40.000 135 70 4 2 127 12 144 1.61e-21 89.4
Msa0660690 AT3G18400.1 40.458 131 67 4 7 129 5 132 1.88e-21 88.6
Msa0660690 AT3G04070.2 37.500 136 71 4 7 130 10 143 2.55e-21 88.6
Msa0660690 AT3G44290.1 34.848 132 78 3 9 133 16 146 2.97e-21 88.2
Msa0660690 AT3G04070.1 37.500 136 71 4 7 130 10 143 3.07e-21 88.6
Msa0660690 AT1G77450.1 35.338 133 78 2 2 128 5 135 3.09e-21 87.0
Msa0660690 AT3G17730.1 35.878 131 75 3 5 127 4 133 3.20e-21 86.7
Msa0660690 AT5G61430.1 41.085 129 65 4 7 127 16 141 4.33e-21 87.8
Msa0660690 AT1G69490.1 35.878 131 75 3 7 130 9 137 5.02e-21 86.7
Msa0660690 AT4G27410.2 34.884 129 77 2 5 127 12 139 5.71e-21 87.0
Msa0660690 AT3G15500.1 35.659 129 76 2 5 127 12 139 1.20e-20 86.3
Msa0660690 AT3G10500.1 34.868 152 88 4 2 145 4 152 1.80e-20 87.4
Msa0660690 AT3G29035.1 40.458 131 67 4 5 127 22 149 1.93e-20 85.9
Msa0660690 AT5G17260.1 35.821 134 77 2 5 130 4 136 2.50e-20 86.7
Msa0660690 AT1G79580.3 33.094 139 82 3 2 130 12 149 2.64e-20 86.3
Msa0660690 AT1G79580.5 33.094 139 82 3 2 130 12 149 2.64e-20 86.3
Msa0660690 AT1G79580.4 33.094 139 82 3 2 130 12 149 2.64e-20 86.3
Msa0660690 AT1G79580.2 33.094 139 82 3 2 130 12 149 2.64e-20 86.3
Msa0660690 AT1G79580.1 33.094 139 82 3 2 130 12 149 2.64e-20 86.3
Msa0660690 AT3G61910.1 31.410 156 97 3 6 152 10 164 3.70e-20 85.5
Msa0660690 AT1G32510.1 29.091 165 103 2 7 157 6 170 6.42e-20 84.0
Msa0660690 AT1G76420.1 40.602 133 62 6 7 127 22 149 1.24e-19 84.0
Msa0660690 AT5G13180.1 35.821 134 70 5 4 127 11 138 1.32e-19 82.8
Msa0660690 AT5G04410.1 34.722 144 85 3 2 137 4 146 1.90e-19 84.3
Msa0660690 AT1G65910.1 35.115 131 76 2 5 127 4 133 2.15e-19 84.3
Msa0660690 AT1G33280.1 33.846 130 76 3 7 127 8 136 2.37e-19 82.8
Msa0660690 AT3G15510.1 37.302 126 68 4 11 127 21 144 2.86e-19 83.2
Msa0660690 AT3G03200.1 34.351 131 77 2 5 127 4 133 3.80e-19 83.6
Msa0660690 AT5G08790.1 32.593 135 83 2 1 129 1 133 5.35e-19 81.6
Msa0660690 AT3G15170.1 36.719 128 74 2 7 127 20 147 8.38e-19 81.3
Msa0660690 AT2G46770.1 32.237 152 91 4 6 148 15 163 9.91e-19 81.6
Msa0660690 AT2G33480.1 35.036 137 77 4 4 133 12 143 1.04e-18 80.5
Msa0660690 AT2G33480.2 35.036 137 77 4 4 133 12 143 1.11e-18 80.5
Msa0660690 AT4G10350.1 31.944 144 88 3 7 141 9 151 1.52e-18 80.9
Msa0660690 AT2G27300.1 34.351 131 78 3 4 127 11 140 2.08e-18 80.5
Msa0660690 AT5G63790.1 33.333 144 84 4 1 136 44 183 3.53e-18 79.7
Msa0660690 AT5G63790.2 33.333 144 84 4 1 136 54 193 3.88e-18 79.7
Msa0660690 AT4G27410.3 33.562 146 73 4 5 127 12 156 4.28e-18 79.3
Msa0660690 AT5G62380.2 31.655 139 79 5 1 127 1 135 4.90e-18 79.7
Msa0660690 AT5G62380.1 31.655 139 79 5 1 127 1 135 4.90e-18 79.7
Msa0660690 AT2G02450.1 34.400 125 76 1 9 127 53 177 5.65e-18 79.7
Msa0660690 AT4G17980.1 35.115 131 76 3 7 128 6 136 5.94e-18 78.6
Msa0660690 AT4G17980.2 35.115 131 76 3 7 128 6 136 7.78e-18 78.6
Msa0660690 AT2G02450.2 34.400 125 76 1 9 127 53 177 8.23e-18 79.3
Msa0660690 AT2G18060.3 31.579 133 79 4 7 129 9 139 1.27e-17 78.6
Msa0660690 AT2G18060.1 31.579 133 79 4 7 129 9 139 1.27e-17 78.6
Msa0660690 AT1G56010.2 33.588 131 77 4 5 127 17 145 1.32e-17 78.2
Msa0660690 AT4G36160.1 31.579 133 79 4 7 129 10 140 1.49e-17 78.6
Msa0660690 AT4G36160.3 31.579 133 79 4 7 129 10 140 1.49e-17 78.6
Msa0660690 AT4G36160.2 31.579 133 79 4 7 129 14 144 1.62e-17 78.6
Msa0660690 AT3G12977.1 31.008 129 82 2 5 127 16 143 1.91e-17 77.4
Msa0660690 AT4G35580.1 35.433 127 73 2 7 125 9 134 1.92e-17 78.6
Msa0660690 AT4G35580.3 35.433 127 73 2 7 125 9 134 2.06e-17 78.6
Msa0660690 AT4G35580.2 35.433 127 73 2 7 125 9 134 2.06e-17 78.6
Msa0660690 AT5G24590.2 31.159 138 87 2 4 133 10 147 2.34e-17 78.2
Msa0660690 AT1G12260.2 30.657 137 83 4 1 127 1 135 3.04e-17 77.4
Msa0660690 AT1G12260.1 30.657 137 83 4 1 127 1 135 5.90e-17 77.0
Msa0660690 AT1G32770.1 31.298 131 80 3 6 127 15 144 1.10e-16 75.9
Msa0660690 AT2G43000.1 30.469 128 82 2 9 130 20 146 1.16e-16 75.1
Msa0660690 AT5G04395.1 33.103 145 76 4 7 130 28 172 1.28e-16 73.6
Msa0660690 AT4G28530.1 30.345 145 78 3 6 127 9 153 2.53e-16 75.1
Msa0660690 AT1G33060.2 33.333 135 81 2 7 133 24 157 3.09e-16 75.1
Msa0660690 AT1G32870.2 36.220 127 74 2 7 127 10 135 3.24e-16 75.1
Msa0660690 AT1G54330.1 32.394 142 84 3 5 135 4 144 3.33e-16 74.3
Msa0660690 AT1G33060.1 33.333 135 81 2 7 133 24 157 3.37e-16 75.1
Msa0660690 AT1G32870.1 36.220 127 74 2 7 127 10 135 3.42e-16 75.1
Msa0660690 AT1G32870.3 36.220 127 74 2 7 127 46 171 3.61e-16 75.1
Msa0660690 AT5G39820.1 33.333 129 77 4 9 129 22 149 4.51e-16 74.3
Msa0660690 AT5G22380.1 31.544 149 88 4 1 137 1 147 5.06e-16 72.8
Msa0660690 AT1G26870.1 33.824 136 75 5 1 126 12 142 5.95e-16 74.3
Msa0660690 AT3G49530.1 31.783 129 78 3 7 126 13 140 6.69e-16 74.3
Msa0660690 AT1G71930.2 28.873 142 87 5 1 130 1 140 6.69e-16 73.6
Msa0660690 AT1G71930.1 28.873 142 87 5 1 130 1 140 6.69e-16 73.6
Msa0660690 AT3G49530.2 31.783 129 78 3 7 126 13 140 9.03e-16 73.6
Msa0660690 AT1G62700.1 31.690 142 81 6 1 130 1 138 1.28e-15 73.2
Msa0660690 AT1G62700.2 31.690 142 81 6 1 130 1 138 1.28e-15 73.2
Msa0660690 AT1G02230.1 32.090 134 76 4 8 129 4 134 1.33e-15 72.8
Msa0660690 AT5G66300.1 29.104 134 83 4 7 130 12 143 2.54e-15 71.6
Msa0660690 AT1G52880.1 31.507 146 79 5 11 137 21 164 4.10e-15 71.2
Msa0660690 AT3G12910.1 28.058 139 88 5 3 131 18 154 4.86e-15 70.9
Msa0660690 AT1G34190.1 32.800 125 75 2 9 125 18 141 9.82e-15 70.9
Msa0660690 AT5G64060.1 30.496 141 89 2 5 137 4 143 1.80e-14 69.7
Msa0660690 AT5G14000.1 34.014 147 74 6 5 138 13 149 5.75e-14 66.6
Msa0660690 AT2G17040.1 32.143 140 83 4 1 129 1 139 7.81e-14 67.4
Msa0660690 AT5G14000.2 33.562 146 74 6 5 137 13 148 8.96e-14 65.1
Msa0660690 AT3G10480.2 33.846 130 77 3 7 128 27 155 9.87e-14 67.8
Msa0660690 AT3G10480.1 33.846 130 77 3 7 128 27 155 1.01e-13 67.8
Msa0660690 AT1G34180.3 31.496 127 78 2 9 127 18 143 3.49e-13 66.2
Msa0660690 AT3G10490.1 32.308 130 79 3 7 128 27 155 4.30e-13 65.1
Msa0660690 AT1G02250.1 31.915 141 77 5 8 134 4 139 9.55e-13 65.1
Msa0660690 AT3G44350.1 29.630 135 78 4 10 130 8 139 1.27e-12 62.4
Msa0660690 AT1G34180.1 32.000 125 76 2 9 125 18 141 1.65e-12 64.3
Msa0660690 AT5G09330.5 31.298 131 79 4 6 127 5 133 3.13e-12 63.5
Msa0660690 AT5G09330.2 31.298 131 79 4 6 127 5 133 3.13e-12 63.5
Msa0660690 AT5G09330.4 31.298 131 79 4 6 127 5 133 3.13e-12 63.5
Msa0660690 AT5G09330.3 31.298 131 79 4 6 127 5 133 3.13e-12 63.5
Msa0660690 AT5G09330.1 31.298 131 79 4 6 127 5 133 3.13e-12 63.5
Msa0660690 AT3G44350.2 29.412 136 79 4 10 131 8 140 5.36e-12 62.0
Msa0660690 AT3G10490.2 32.308 130 79 3 7 128 27 155 6.12e-12 62.8

Find 79 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCTTCATTCCCACTTTC+TGG 0.138453 4_3:+71675636 None:intergenic
AGGATTTAATTTAATAATTA+TGG 0.149116 4_3:+71674887 None:intergenic
AATAAATCCAGTACCGAAAA+TGG 0.244913 4_3:-71675707 Msa0660690:CDS
CGGAGGAAAGGAAAATTTAA+AGG 0.270673 4_3:+71674867 None:intergenic
ATTTAATAATTATGGTATAT+AGG 0.287293 4_3:+71674895 None:intergenic
ATTCGCCAATGTGGAATAAT+AGG 0.293651 4_3:+71675612 None:intergenic
CTTGTTCCTTGGGAATTAAA+TGG 0.298684 4_3:-71676151 Msa0660690:intron
CCAGTACCGAAAATGGATAT+TGG 0.313420 4_3:-71675700 Msa0660690:CDS
ATCTGTCTCTACTTGTTCCT+TGG 0.327451 4_3:-71676162 Msa0660690:CDS
AGTAGTTATATGTATGCATT+AGG 0.340471 4_3:-71675167 Msa0660690:three_prime_UTR
AATGGATATTGGGAGGAAAT+TGG 0.352799 4_3:-71675689 Msa0660690:CDS
TCTGTCTCTACTTGTTCCTT+GGG 0.353376 4_3:-71676161 Msa0660690:CDS
TGGTCAGTGCCTGAAAATAT+TGG 0.355149 4_3:+71675656 None:intergenic
CTATAGATATATAGCTAACT+AGG 0.361810 4_3:+71675413 None:intergenic
GAATATCATATTTGCTCCTC+TGG 0.364606 4_3:-71675554 Msa0660690:CDS
TCTAGATCAGGGATGAAGTT+TGG 0.373168 4_3:+71676184 None:intergenic
AATTCAAATATATCCTTGAA+TGG 0.375129 4_3:-71676308 Msa0660690:exon
TGGCATGACAGGGTGAAAAT+TGG 0.385812 4_3:-71675362 Msa0660690:three_prime_UTR
GGGAGGGTGAACTTGCAATA+TGG 0.391228 4_3:-71675054 Msa0660690:three_prime_UTR
CTATAGTTTAATTAATTGAA+TGG 0.396911 4_3:-71675396 Msa0660690:three_prime_UTR
GATATTGTCAAGCTTCCTCC+TGG 0.398901 4_3:-71676283 Msa0660690:CDS
TACCTATTGTTTCAAAAGCC+AGG 0.411047 4_3:-71675075 Msa0660690:three_prime_UTR
CAGTACCGAAAATGGATATT+GGG 0.414415 4_3:-71675699 Msa0660690:CDS
CAAAGTACTGTTTCATATCA+TGG 0.427460 4_3:-71675524 Msa0660690:CDS
CACAAAGTTCTGAAACAAGT+TGG 0.433370 4_3:-71675586 Msa0660690:CDS
CTTTAATTTGCATGTGATGA+TGG 0.444684 4_3:-71675117 Msa0660690:three_prime_UTR
TATTGCAAGTTCACCCTCCC+TGG 0.448564 4_3:+71675057 None:intergenic
TGTTAGTTGTAATTATACTT+TGG 0.451744 4_3:+71676336 None:intergenic
AGTAGAGACAGATCTAGATC+AGG 0.454456 4_3:+71676172 None:intergenic
AGGATAAGTTCTTCATCTGT+TGG 0.457202 4_3:+71676247 None:intergenic
ACAGTGGAACTGATCTTTCA+TGG 0.461699 4_3:-71675251 Msa0660690:three_prime_UTR
TGCATCATGCATGGCATGAC+AGG 0.462299 4_3:-71675373 Msa0660690:three_prime_UTR
ATTCAAATATATCCTTGAAT+GGG 0.462883 4_3:-71676307 Msa0660690:exon
ATAATTATGGTATATAGGAC+TGG 0.470174 4_3:+71674900 None:intergenic
TTGACAATATCTCCCATTCA+AGG 0.473122 4_3:+71676295 None:intergenic
CAGCTTCTATGAGTGATATC+CGG 0.477564 4_3:+71674847 None:intergenic
TAATTATGGTATATAGGACT+GGG 0.497115 4_3:+71674901 None:intergenic
AGGGTGAAAATTGGAGCGAA+TGG 0.500867 4_3:-71675353 Msa0660690:three_prime_UTR
GGGTGAAAATTGGAGCGAAT+GGG 0.512033 4_3:-71675352 Msa0660690:three_prime_UTR
ACAAAGTTCTGAAACAAGTT+GGG 0.512054 4_3:-71675585 Msa0660690:CDS
TCTAAATTAGATGAAATGCT+TGG 0.519517 4_3:+71674925 None:intergenic
AGATGAAATGCTTGGAAGGT+GGG 0.524433 4_3:+71674933 None:intergenic
TTCATATCATGGTGATAAAG+TGG 0.528044 4_3:-71675513 Msa0660690:CDS
TTCAGGCACTGACCAGAAAG+TGG 0.528880 4_3:-71675648 Msa0660690:CDS
ACCTATTGTTTCAAAAGCCA+GGG 0.536433 4_3:-71675074 Msa0660690:three_prime_UTR
TATAGATATATAGCTAACTA+GGG 0.548844 4_3:+71675414 None:intergenic
ATATTGTCAAGCTTCCTCCT+GGG 0.550955 4_3:-71676282 Msa0660690:CDS
AATTAGATGAAATGCTTGGA+AGG 0.552950 4_3:+71674929 None:intergenic
GGAGTACCATTTAATTCCCA+AGG 0.563304 4_3:+71676145 None:intergenic
TAGATGAAATGCTTGGAAGG+TGG 0.568160 4_3:+71674932 None:intergenic
CCTTAGAATAGAGAAAATGA+AGG 0.569373 4_3:+71676227 None:intergenic
CTATTTCTTCGCCAAAGTGA+AGG 0.570044 4_3:-71675732 Msa0660690:CDS
TAGTGATTTACACCTTCTTG+AGG 0.571144 4_3:+71675291 None:intergenic
GTAGAGACAGATCTAGATCA+GGG 0.575051 4_3:+71676173 None:intergenic
ATGAGTGATATCCGGAGGAA+AGG 0.576273 4_3:+71674855 None:intergenic
AAGAACATGTATCCTCAAGA+AGG 0.582925 4_3:-71675303 Msa0660690:three_prime_UTR
TCAGGCACTGACCAGAAAGT+GGG 0.598459 4_3:-71675647 Msa0660690:CDS
ACATTGTCTCAAAGACATGA+AGG 0.601677 4_3:-71675001 Msa0660690:three_prime_UTR
TACATATAACTACTGAGGCA+TGG 0.622199 4_3:+71675176 None:intergenic
TACCGAAAATGGATATTGGG+AGG 0.624892 4_3:-71675696 Msa0660690:CDS
ATTGTTTCAAAAGCCAGGGA+GGG 0.633726 4_3:-71675070 Msa0660690:three_prime_UTR
TTTGTGCTAATTCGCCAATG+TGG 0.638216 4_3:+71675603 None:intergenic
ATTGAATGGTGCATCATGCA+TGG 0.642847 4_3:-71675382 Msa0660690:three_prime_UTR
ACAGATAAGGCATTGTGCGG+TGG 0.648627 4_3:-71675767 Msa0660690:intron
TATTGTTTCAAAAGCCAGGG+AGG 0.656497 4_3:-71675071 Msa0660690:three_prime_UTR
ATGCATACATATAACTACTG+AGG 0.671624 4_3:+71675171 None:intergenic
GAGTTGGATGATGACATGGA+GGG 0.677180 4_3:-71675204 Msa0660690:three_prime_UTR
TATGGAGTTGGATGATGACA+TGG 0.677404 4_3:-71675208 Msa0660690:three_prime_UTR
AAGTACCTATTATTCCACAT+TGG 0.679443 4_3:-71675617 Msa0660690:CDS
GTTGGAGAGAAGACAAACCC+AGG 0.681756 4_3:+71676265 None:intergenic
CTTCTATGAGTGATATCCGG+AGG 0.684625 4_3:+71674850 None:intergenic
GCATCATGCATGGCATGACA+GGG 0.687982 4_3:-71675372 Msa0660690:three_prime_UTR
TTGGAAGGTGGGACATAGTG+TGG 0.689174 4_3:+71674944 None:intergenic
TGTACAGATAAGGCATTGTG+CGG 0.708392 4_3:-71675770 Msa0660690:intron
GGAGAGAAGACAAACCCAGG+AGG 0.709023 4_3:+71676268 None:intergenic
AGTACTTTGATCAAATCCAG+AGG 0.713491 4_3:+71675538 None:intergenic
GGAGTTGGATGATGACATGG+AGG 0.714464 4_3:-71675205 Msa0660690:three_prime_UTR
AATTATGGTATATAGGACTG+GGG 0.719616 4_3:+71674902 None:intergenic
AACAGCGATGATGATGACAG+TGG 0.723595 4_3:-71675267 Msa0660690:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAATATTGAAGAAA+TGG + chr4_3:71675087-71675106 None:intergenic 10.0%
!! ATTTAATAATTATGGTATAT+AGG + chr4_3:71676316-71676335 None:intergenic 10.0%
!!! AGGATTTAATTTAATAATTA+TGG + chr4_3:71676324-71676343 None:intergenic 10.0%
!! AATTAAAAATATTGAAGAAA+TGG + chr4_3:71675087-71675106 None:intergenic 10.0%
!! ATTTAATAATTATGGTATAT+AGG + chr4_3:71676316-71676335 None:intergenic 10.0%
!!! AGGATTTAATTTAATAATTA+TGG + chr4_3:71676324-71676343 None:intergenic 10.0%
!! CTATAGTTTAATTAATTGAA+TGG - chr4_3:71675812-71675831 Msa0660690:intron 15.0%
!! CTATAGTTTAATTAATTGAA+TGG - chr4_3:71675812-71675831 Msa0660690:intron 15.0%
!! TGTTAGTTGTAATTATACTT+TGG + chr4_3:71674875-71674894 None:intergenic 20.0%
!! AATTCAAATATATCCTTGAA+TGG - chr4_3:71674900-71674919 Msa0660690:three_prime_UTR 20.0%
!! ATTCAAATATATCCTTGAAT+GGG - chr4_3:71674901-71674920 Msa0660690:three_prime_UTR 20.0%
!! TTATTTAACATGTACAGATA+AGG - chr4_3:71675428-71675447 Msa0660690:three_prime_UTR 20.0%
!! TATAGATATATAGCTAACTA+GGG + chr4_3:71675797-71675816 None:intergenic 20.0%
!!! AGACAATGTTTCTTTTTATA+TGG + chr4_3:71676196-71676215 None:intergenic 20.0%
!! TGTTAGTTGTAATTATACTT+TGG + chr4_3:71674875-71674894 None:intergenic 20.0%
!! AATTCAAATATATCCTTGAA+TGG - chr4_3:71674900-71674919 Msa0660690:three_prime_UTR 20.0%
!! ATTCAAATATATCCTTGAAT+GGG - chr4_3:71674901-71674920 Msa0660690:three_prime_UTR 20.0%
!! TTATTTAACATGTACAGATA+AGG - chr4_3:71675428-71675447 Msa0660690:three_prime_UTR 20.0%
!! TATAGATATATAGCTAACTA+GGG + chr4_3:71675797-71675816 None:intergenic 20.0%
!!! AGACAATGTTTCTTTTTATA+TGG + chr4_3:71676196-71676215 None:intergenic 20.0%
! TCATCGAAAGTAGTAAAATT+TGG + chr4_3:71675135-71675154 None:intergenic 25.0%
! AGAAAGAAAAAAAAAAGACC+AGG - chr4_3:71675203-71675222 Msa0660690:three_prime_UTR 25.0%
! GATACATAACATAAGAGATA+TGG + chr4_3:71675283-71675302 None:intergenic 25.0%
! CTATAGATATATAGCTAACT+AGG + chr4_3:71675798-71675817 None:intergenic 25.0%
! AGTAGTTATATGTATGCATT+AGG - chr4_3:71676041-71676060 Msa0660690:intron 25.0%
! TCTAAATTAGATGAAATGCT+TGG + chr4_3:71676286-71676305 None:intergenic 25.0%
! TAATTATGGTATATAGGACT+GGG + chr4_3:71676310-71676329 None:intergenic 25.0%
! ATAATTATGGTATATAGGAC+TGG + chr4_3:71676311-71676330 None:intergenic 25.0%
! TCATCGAAAGTAGTAAAATT+TGG + chr4_3:71675135-71675154 None:intergenic 25.0%
! AGAAAGAAAAAAAAAAGACC+AGG - chr4_3:71675203-71675222 Msa0660690:three_prime_UTR 25.0%
! GATACATAACATAAGAGATA+TGG + chr4_3:71675283-71675302 None:intergenic 25.0%
! CTATAGATATATAGCTAACT+AGG + chr4_3:71675798-71675817 None:intergenic 25.0%
! AGTAGTTATATGTATGCATT+AGG - chr4_3:71676041-71676060 Msa0660690:intron 25.0%
! TCTAAATTAGATGAAATGCT+TGG + chr4_3:71676286-71676305 None:intergenic 25.0%
! TAATTATGGTATATAGGACT+GGG + chr4_3:71676310-71676329 None:intergenic 25.0%
! ATAATTATGGTATATAGGAC+TGG + chr4_3:71676311-71676330 None:intergenic 25.0%
CCTTAGAATAGAGAAAATGA+AGG + chr4_3:71674984-71675003 None:intergenic 30.0%
! CCTTCATTTTCTCTATTCTA+AGG - chr4_3:71674981-71675000 Msa0660690:three_prime_UTR 30.0%
! TGTAGTATAAGTTCTAATCC+TGG + chr4_3:71675224-71675243 None:intergenic 30.0%
TTCATCGAATATTCATGCAT+TGG + chr4_3:71675388-71675407 None:intergenic 30.0%
!! GGATTTATTTTCCTTCACTT+TGG + chr4_3:71675490-71675509 None:intergenic 30.0%
! AATAAATCCAGTACCGAAAA+TGG - chr4_3:71675501-71675520 Msa0660690:CDS 30.0%
! GTTACAGTACCAATATTTTC+AGG - chr4_3:71675543-71675562 Msa0660690:CDS 30.0%
AAGTACCTATTATTCCACAT+TGG - chr4_3:71675591-71675610 Msa0660690:CDS 30.0%
!! ACAAAGTTCTGAAACAAGTT+GGG - chr4_3:71675623-71675642 Msa0660690:CDS 30.0%
!! CAAAGTACTGTTTCATATCA+TGG - chr4_3:71675684-71675703 Msa0660690:CDS 30.0%
TTCATATCATGGTGATAAAG+TGG - chr4_3:71675695-71675714 Msa0660690:CDS 30.0%
ATGCATACATATAACTACTG+AGG + chr4_3:71676040-71676059 None:intergenic 30.0%
!! CTTTAATTTGCATGTGATGA+TGG - chr4_3:71676091-71676110 Msa0660690:intron 30.0%
AATTAGATGAAATGCTTGGA+AGG + chr4_3:71676282-71676301 None:intergenic 30.0%
AATTATGGTATATAGGACTG+GGG + chr4_3:71676309-71676328 None:intergenic 30.0%
! CTTTAAATTTTCCTTTCCTC+CGG - chr4_3:71676342-71676361 Msa0660690:five_prime_UTR 30.0%
CCTTAGAATAGAGAAAATGA+AGG + chr4_3:71674984-71675003 None:intergenic 30.0%
! CCTTCATTTTCTCTATTCTA+AGG - chr4_3:71674981-71675000 Msa0660690:three_prime_UTR 30.0%
! TGTAGTATAAGTTCTAATCC+TGG + chr4_3:71675224-71675243 None:intergenic 30.0%
TTCATCGAATATTCATGCAT+TGG + chr4_3:71675388-71675407 None:intergenic 30.0%
!! GGATTTATTTTCCTTCACTT+TGG + chr4_3:71675490-71675509 None:intergenic 30.0%
! AATAAATCCAGTACCGAAAA+TGG - chr4_3:71675501-71675520 Msa0660690:CDS 30.0%
! GTTACAGTACCAATATTTTC+AGG - chr4_3:71675543-71675562 Msa0660690:CDS 30.0%
AAGTACCTATTATTCCACAT+TGG - chr4_3:71675591-71675610 Msa0660690:CDS 30.0%
!! ACAAAGTTCTGAAACAAGTT+GGG - chr4_3:71675623-71675642 Msa0660690:CDS 30.0%
!! CAAAGTACTGTTTCATATCA+TGG - chr4_3:71675684-71675703 Msa0660690:CDS 30.0%
TTCATATCATGGTGATAAAG+TGG - chr4_3:71675695-71675714 Msa0660690:CDS 30.0%
ATGCATACATATAACTACTG+AGG + chr4_3:71676040-71676059 None:intergenic 30.0%
!! CTTTAATTTGCATGTGATGA+TGG - chr4_3:71676091-71676110 Msa0660690:intron 30.0%
AATTAGATGAAATGCTTGGA+AGG + chr4_3:71676282-71676301 None:intergenic 30.0%
AATTATGGTATATAGGACTG+GGG + chr4_3:71676309-71676328 None:intergenic 30.0%
! CTTTAAATTTTCCTTTCCTC+CGG - chr4_3:71676342-71676361 Msa0660690:five_prime_UTR 30.0%
TTGACAATATCTCCCATTCA+AGG + chr4_3:71674916-71674935 None:intergenic 35.0%
AGGATAAGTTCTTCATCTGT+TGG + chr4_3:71674964-71674983 None:intergenic 35.0%
CTTGTTCCTTGGGAATTAAA+TGG - chr4_3:71675057-71675076 Msa0660690:three_prime_UTR 35.0%
! TAGCTGTGTGTATGTGATTT+TGG + chr4_3:71675325-71675344 None:intergenic 35.0%
! CAGTACCGAAAATGGATATT+GGG - chr4_3:71675509-71675528 Msa0660690:CDS 35.0%
! TTCCTCCCAATATCCATTTT+CGG + chr4_3:71675517-71675536 None:intergenic 35.0%
AATGGATATTGGGAGGAAAT+TGG - chr4_3:71675519-71675538 Msa0660690:CDS 35.0%
ATTCGCCAATGTGGAATAAT+AGG + chr4_3:71675599-71675618 None:intergenic 35.0%
!! CACAAAGTTCTGAAACAAGT+TGG - chr4_3:71675622-71675641 Msa0660690:CDS 35.0%
GAATATCATATTTGCTCCTC+TGG - chr4_3:71675654-71675673 Msa0660690:CDS 35.0%
AGTACTTTGATCAAATCCAG+AGG + chr4_3:71675673-71675692 None:intergenic 35.0%
AAGAACATGTATCCTCAAGA+AGG - chr4_3:71675905-71675924 Msa0660690:intron 35.0%
TAGTGATTTACACCTTCTTG+AGG + chr4_3:71675920-71675939 None:intergenic 35.0%
! AGACCAAGTTTTTCTGTCTA+TGG - chr4_3:71675982-71676001 Msa0660690:intron 35.0%
ACTCCATAGACAGAAAAACT+TGG + chr4_3:71675988-71676007 None:intergenic 35.0%
! AGTTTTTCTGTCTATGGAGT+TGG - chr4_3:71675988-71676007 Msa0660690:intron 35.0%
TACATATAACTACTGAGGCA+TGG + chr4_3:71676035-71676054 None:intergenic 35.0%
TACCTATTGTTTCAAAAGCC+AGG - chr4_3:71676133-71676152 Msa0660690:intron 35.0%
ACCTATTGTTTCAAAAGCCA+GGG - chr4_3:71676134-71676153 Msa0660690:intron 35.0%
ACATTGTCTCAAAGACATGA+AGG - chr4_3:71676207-71676226 Msa0660690:CDS 35.0%
CGGAGGAAAGGAAAATTTAA+AGG + chr4_3:71676344-71676363 None:intergenic 35.0%
TTGACAATATCTCCCATTCA+AGG + chr4_3:71674916-71674935 None:intergenic 35.0%
AGGATAAGTTCTTCATCTGT+TGG + chr4_3:71674964-71674983 None:intergenic 35.0%
CTTGTTCCTTGGGAATTAAA+TGG - chr4_3:71675057-71675076 Msa0660690:three_prime_UTR 35.0%
! TAGCTGTGTGTATGTGATTT+TGG + chr4_3:71675325-71675344 None:intergenic 35.0%
! CAGTACCGAAAATGGATATT+GGG - chr4_3:71675509-71675528 Msa0660690:CDS 35.0%
! TTCCTCCCAATATCCATTTT+CGG + chr4_3:71675517-71675536 None:intergenic 35.0%
AATGGATATTGGGAGGAAAT+TGG - chr4_3:71675519-71675538 Msa0660690:CDS 35.0%
ATTCGCCAATGTGGAATAAT+AGG + chr4_3:71675599-71675618 None:intergenic 35.0%
!! CACAAAGTTCTGAAACAAGT+TGG - chr4_3:71675622-71675641 Msa0660690:CDS 35.0%
GAATATCATATTTGCTCCTC+TGG - chr4_3:71675654-71675673 Msa0660690:CDS 35.0%
AGTACTTTGATCAAATCCAG+AGG + chr4_3:71675673-71675692 None:intergenic 35.0%
AAGAACATGTATCCTCAAGA+AGG - chr4_3:71675905-71675924 Msa0660690:intron 35.0%
TAGTGATTTACACCTTCTTG+AGG + chr4_3:71675920-71675939 None:intergenic 35.0%
! AGACCAAGTTTTTCTGTCTA+TGG - chr4_3:71675982-71676001 Msa0660690:intron 35.0%
ACTCCATAGACAGAAAAACT+TGG + chr4_3:71675988-71676007 None:intergenic 35.0%
! AGTTTTTCTGTCTATGGAGT+TGG - chr4_3:71675988-71676007 Msa0660690:intron 35.0%
TACATATAACTACTGAGGCA+TGG + chr4_3:71676035-71676054 None:intergenic 35.0%
TACCTATTGTTTCAAAAGCC+AGG - chr4_3:71676133-71676152 Msa0660690:intron 35.0%
ACCTATTGTTTCAAAAGCCA+GGG - chr4_3:71676134-71676153 Msa0660690:intron 35.0%
ACATTGTCTCAAAGACATGA+AGG - chr4_3:71676207-71676226 Msa0660690:CDS 35.0%
CGGAGGAAAGGAAAATTTAA+AGG + chr4_3:71676344-71676363 None:intergenic 35.0%
ATATTGTCAAGCTTCCTCCT+GGG - chr4_3:71674926-71674945 Msa0660690:three_prime_UTR 40.0%
TCTAGATCAGGGATGAAGTT+TGG + chr4_3:71675027-71675046 None:intergenic 40.0%
GTAGAGACAGATCTAGATCA+GGG + chr4_3:71675038-71675057 None:intergenic 40.0%
AGTAGAGACAGATCTAGATC+AGG + chr4_3:71675039-71675058 None:intergenic 40.0%
ATCTGTCTCTACTTGTTCCT+TGG - chr4_3:71675046-71675065 Msa0660690:three_prime_UTR 40.0%
TCTGTCTCTACTTGTTCCTT+GGG - chr4_3:71675047-71675066 Msa0660690:three_prime_UTR 40.0%
! GGAGTACCATTTAATTCCCA+AGG + chr4_3:71675066-71675085 None:intergenic 40.0%
CATGCATTGGACATGTGTAT+TGG + chr4_3:71675375-71675394 None:intergenic 40.0%
!! TGTACAGATAAGGCATTGTG+CGG - chr4_3:71675438-71675457 Msa0660690:three_prime_UTR 40.0%
! CTATTTCTTCGCCAAAGTGA+AGG - chr4_3:71675476-71675495 Msa0660690:CDS 40.0%
! CCAATATCCATTTTCGGTAC+TGG + chr4_3:71675511-71675530 None:intergenic 40.0%
! CCAGTACCGAAAATGGATAT+TGG - chr4_3:71675508-71675527 Msa0660690:CDS 40.0%
TACCGAAAATGGATATTGGG+AGG - chr4_3:71675512-71675531 Msa0660690:CDS 40.0%
TGGTCAGTGCCTGAAAATAT+TGG + chr4_3:71675555-71675574 None:intergenic 40.0%
ACTTCTTCATTCCCACTTTC+TGG + chr4_3:71675575-71675594 None:intergenic 40.0%
TTTGTGCTAATTCGCCAATG+TGG + chr4_3:71675608-71675627 None:intergenic 40.0%
ATTGAATGGTGCATCATGCA+TGG - chr4_3:71675826-71675845 Msa0660690:intron 40.0%
ACAGTGGAACTGATCTTTCA+TGG - chr4_3:71675957-71675976 Msa0660690:intron 40.0%
TATGGAGTTGGATGATGACA+TGG - chr4_3:71676000-71676019 Msa0660690:intron 40.0%
!!! TCCCTGGCTTTTGAAACAAT+AGG + chr4_3:71676138-71676157 None:intergenic 40.0%
TATTGTTTCAAAAGCCAGGG+AGG - chr4_3:71676137-71676156 Msa0660690:intron 40.0%
ATTGTTTCAAAAGCCAGGGA+GGG - chr4_3:71676138-71676157 Msa0660690:intron 40.0%
AGATGAAATGCTTGGAAGGT+GGG + chr4_3:71676278-71676297 None:intergenic 40.0%
TAGATGAAATGCTTGGAAGG+TGG + chr4_3:71676279-71676298 None:intergenic 40.0%
ATATTGTCAAGCTTCCTCCT+GGG - chr4_3:71674926-71674945 Msa0660690:three_prime_UTR 40.0%
TCTAGATCAGGGATGAAGTT+TGG + chr4_3:71675027-71675046 None:intergenic 40.0%
GTAGAGACAGATCTAGATCA+GGG + chr4_3:71675038-71675057 None:intergenic 40.0%
AGTAGAGACAGATCTAGATC+AGG + chr4_3:71675039-71675058 None:intergenic 40.0%
ATCTGTCTCTACTTGTTCCT+TGG - chr4_3:71675046-71675065 Msa0660690:three_prime_UTR 40.0%
TCTGTCTCTACTTGTTCCTT+GGG - chr4_3:71675047-71675066 Msa0660690:three_prime_UTR 40.0%
! GGAGTACCATTTAATTCCCA+AGG + chr4_3:71675066-71675085 None:intergenic 40.0%
CATGCATTGGACATGTGTAT+TGG + chr4_3:71675375-71675394 None:intergenic 40.0%
!! TGTACAGATAAGGCATTGTG+CGG - chr4_3:71675438-71675457 Msa0660690:three_prime_UTR 40.0%
! CTATTTCTTCGCCAAAGTGA+AGG - chr4_3:71675476-71675495 Msa0660690:CDS 40.0%
! CCAATATCCATTTTCGGTAC+TGG + chr4_3:71675511-71675530 None:intergenic 40.0%
! CCAGTACCGAAAATGGATAT+TGG - chr4_3:71675508-71675527 Msa0660690:CDS 40.0%
TACCGAAAATGGATATTGGG+AGG - chr4_3:71675512-71675531 Msa0660690:CDS 40.0%
TGGTCAGTGCCTGAAAATAT+TGG + chr4_3:71675555-71675574 None:intergenic 40.0%
ACTTCTTCATTCCCACTTTC+TGG + chr4_3:71675575-71675594 None:intergenic 40.0%
TTTGTGCTAATTCGCCAATG+TGG + chr4_3:71675608-71675627 None:intergenic 40.0%
ATTGAATGGTGCATCATGCA+TGG - chr4_3:71675826-71675845 Msa0660690:intron 40.0%
ACAGTGGAACTGATCTTTCA+TGG - chr4_3:71675957-71675976 Msa0660690:intron 40.0%
TATGGAGTTGGATGATGACA+TGG - chr4_3:71676000-71676019 Msa0660690:intron 40.0%
!!! TCCCTGGCTTTTGAAACAAT+AGG + chr4_3:71676138-71676157 None:intergenic 40.0%
TATTGTTTCAAAAGCCAGGG+AGG - chr4_3:71676137-71676156 Msa0660690:intron 40.0%
ATTGTTTCAAAAGCCAGGGA+GGG - chr4_3:71676138-71676157 Msa0660690:intron 40.0%
AGATGAAATGCTTGGAAGGT+GGG + chr4_3:71676278-71676297 None:intergenic 40.0%
TAGATGAAATGCTTGGAAGG+TGG + chr4_3:71676279-71676298 None:intergenic 40.0%
GATATTGTCAAGCTTCCTCC+TGG - chr4_3:71674925-71674944 Msa0660690:three_prime_UTR 45.0%
TGGCATGACAGGGTGAAAAT+TGG - chr4_3:71675846-71675865 Msa0660690:intron 45.0%
AGGGTGAAAATTGGAGCGAA+TGG - chr4_3:71675855-71675874 Msa0660690:intron 45.0%
GGGTGAAAATTGGAGCGAAT+GGG - chr4_3:71675856-71675875 Msa0660690:intron 45.0%
! AACAGCGATGATGATGACAG+TGG - chr4_3:71675941-71675960 Msa0660690:intron 45.0%
GAGTTGGATGATGACATGGA+GGG - chr4_3:71676004-71676023 Msa0660690:intron 45.0%
GATATTGTCAAGCTTCCTCC+TGG - chr4_3:71674925-71674944 Msa0660690:three_prime_UTR 45.0%
TGGCATGACAGGGTGAAAAT+TGG - chr4_3:71675846-71675865 Msa0660690:intron 45.0%
AGGGTGAAAATTGGAGCGAA+TGG - chr4_3:71675855-71675874 Msa0660690:intron 45.0%
GGGTGAAAATTGGAGCGAAT+GGG - chr4_3:71675856-71675875 Msa0660690:intron 45.0%
! AACAGCGATGATGATGACAG+TGG - chr4_3:71675941-71675960 Msa0660690:intron 45.0%
GAGTTGGATGATGACATGGA+GGG - chr4_3:71676004-71676023 Msa0660690:intron 45.0%
!! AATTTAATATATTGAATATA+CGG - chr4_3:71675256-71675275 Msa0660690:three_prime_UTR 5.0%
!! AATTTAATATATTGAATATA+CGG - chr4_3:71675256-71675275 Msa0660690:three_prime_UTR 5.0%
GTTGGAGAGAAGACAAACCC+AGG + chr4_3:71674946-71674965 None:intergenic 50.0%
!! ACAGATAAGGCATTGTGCGG+TGG - chr4_3:71675441-71675460 Msa0660690:three_prime_UTR 50.0%
!! TTCAGGCACTGACCAGAAAG+TGG - chr4_3:71675560-71675579 Msa0660690:CDS 50.0%
!! TCAGGCACTGACCAGAAAGT+GGG - chr4_3:71675561-71675580 Msa0660690:CDS 50.0%
TGCATCATGCATGGCATGAC+AGG - chr4_3:71675835-71675854 Msa0660690:intron 50.0%
GCATCATGCATGGCATGACA+GGG - chr4_3:71675836-71675855 Msa0660690:intron 50.0%
GGAGTTGGATGATGACATGG+AGG - chr4_3:71676003-71676022 Msa0660690:intron 50.0%
TATTGCAAGTTCACCCTCCC+TGG + chr4_3:71676154-71676173 None:intergenic 50.0%
GGGAGGGTGAACTTGCAATA+TGG - chr4_3:71676154-71676173 Msa0660690:CDS 50.0%
TTGGAAGGTGGGACATAGTG+TGG + chr4_3:71676267-71676286 None:intergenic 50.0%
GTTGGAGAGAAGACAAACCC+AGG + chr4_3:71674946-71674965 None:intergenic 50.0%
!! ACAGATAAGGCATTGTGCGG+TGG - chr4_3:71675441-71675460 Msa0660690:three_prime_UTR 50.0%
!! TTCAGGCACTGACCAGAAAG+TGG - chr4_3:71675560-71675579 Msa0660690:CDS 50.0%
!! TCAGGCACTGACCAGAAAGT+GGG - chr4_3:71675561-71675580 Msa0660690:CDS 50.0%
TGCATCATGCATGGCATGAC+AGG - chr4_3:71675835-71675854 Msa0660690:intron 50.0%
GCATCATGCATGGCATGACA+GGG - chr4_3:71675836-71675855 Msa0660690:intron 50.0%
GGAGTTGGATGATGACATGG+AGG - chr4_3:71676003-71676022 Msa0660690:intron 50.0%
TATTGCAAGTTCACCCTCCC+TGG + chr4_3:71676154-71676173 None:intergenic 50.0%
GGGAGGGTGAACTTGCAATA+TGG - chr4_3:71676154-71676173 Msa0660690:CDS 50.0%
TTGGAAGGTGGGACATAGTG+TGG + chr4_3:71676267-71676286 None:intergenic 50.0%
GGAGAGAAGACAAACCCAGG+AGG + chr4_3:71674943-71674962 None:intergenic 55.0%
GGAGAGAAGACAAACCCAGG+AGG + chr4_3:71674943-71674962 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 71674859 71676371 71674859 ID=Msa0660690;Name=Msa0660690
chr4_3 mRNA 71674859 71676371 71674859 ID=Msa0660690-mRNA-1;Parent=Msa0660690;Name=Msa0660690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=60|1|1|1|1|1|2|613|157
chr4_3 exon 71674859 71675785 71674859 ID=Msa0660690-mRNA-1:exon:21434;Parent=Msa0660690-mRNA-1
chr4_3 exon 71676152 71676371 71676152 ID=Msa0660690-mRNA-1:exon:21433;Parent=Msa0660690-mRNA-1
chr4_3 five_prime_UTR 71676312 71676371 71676312 ID=Msa0660690-mRNA-1:five_prime_utr;Parent=Msa0660690-mRNA-1
chr4_3 CDS 71676152 71676311 71676152 ID=Msa0660690-mRNA-1:cds;Parent=Msa0660690-mRNA-1
chr4_3 CDS 71675472 71675785 71675472 ID=Msa0660690-mRNA-1:cds;Parent=Msa0660690-mRNA-1
chr4_3 three_prime_UTR 71674859 71675471 71674859 ID=Msa0660690-mRNA-1:three_prime_utr;Parent=Msa0660690-mRNA-1
Gene Sequence

>Msa0660690

ATGGGAGATATTGTCAAGCTTCCTCCTGGGTTTGTCTTCTCTCCAACAGATGAAGAACTTATCCTTCATTTTCTCTATTCTAAGGCTTCTCTTATTCAATCTCATCCAAACTTCATCCCTGATCTAGATCTGTCTCTACTTGTTCCTTGGGAATTAAATGATAAGGCATTGTGCGGTGGAAATGATGAATACTATTTCTTCGCCAAAGTGAAGGAAAATAAATCCAGTACCGAAAATGGATATTGGGAGGAAATTGGTGTTACAGTACCAATATTTTCAGGCACTGACCAGAAAGTGGGAATGAAGAAGTACCTATTATTCCACATTGGCGAATTAGCACAAAGTTCTGAAACAAGTTGGGTAATGCAAGAATATCATATTTGCTCCTCTGGATTTGATCAAAGTACTGTTTCATATCATGGTGATAAAGTGGTAAGTGACATTATTTATTTTGACAATAAGCTAATAAAATGA
Protein sequence

>Msa0660690

MGDIVKLPPGFVFSPTDEELILHFLYSKASLIQSHPNFIPDLDLSLLVPWELNDKALCGGNDEYYFFAKVKENKSSTENGYWEEIGVTVPIFSGTDQKVGMKKYLLFHIGELAQSSETSWVMQEYHICSSGFDQSTVSYHGDKVVSDIIYFDNKLIK*