AlfalfaGEDB | Msa0660690

M. sativa cultivar zhongmu-4 / Msa0660690

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660690	QDX01709.1	100.000	144	0	0	1	144	1	144	9.95e-101	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660690	sp\|Q8GWK6\|NC104_ARATH	50.806	124	54	3	5	127	1	118	6.90e-35	123

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660690	A0A6B7JGK5	100.000	144	0	0	1	144	1	144	4.75e-101	298

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TFs/TRs:

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Gene ID	Type	Classification
Msa0660690	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0378130	Msa0660690	0.903788	2.413769e-79	-8.615850e-47
Msa0378180	Msa0660690	0.891189	4.986563e-74	-8.615850e-47
Msa0390280	Msa0660690	0.890566	8.775228e-74	-8.615850e-47
Msa0475770	Msa0660690	0.878039	3.875463e-69	-8.615850e-47
Msa0518230	Msa0660690	0.950492	1.474304e-108	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660690	MtrunA17_Chr3g0130321	92.568	148	10	1	1	147	1	148	2.98e-97	279
Msa0660690	MtrunA17_Chr8g0384351	66.667	126	31	5	5	130	8	122	2.05e-46	149
Msa0660690	MtrunA17_Chr4g0050701	49.180	122	59	3	7	127	11	130	9.65e-39	130
Msa0660690	MtrunA17_Chr5g0417791	38.346	133	73	3	5	130	1	131	2.98e-25	97.4
Msa0660690	MtrunA17_Chr2g0318101	40.458	131	67	4	7	128	15	143	1.53e-24	97.1
Msa0660690	MtrunA17_Chr4g0042561	38.028	142	76	4	6	140	8	144	4.34e-24	94.4
Msa0660690	MtrunA17_Chr4g0047841	40.152	132	68	4	7	129	15	144	1.11e-23	94.7
Msa0660690	MtrunA17_Chr7g0263931	37.063	143	79	4	5	138	9	149	3.75e-23	92.8
Msa0660690	MtrunA17_Chr1g0147421	41.026	156	69	8	7	148	27	173	7.48e-23	92.4
Msa0660690	MtrunA17_Chr4g0060931	42.636	129	63	4	7	127	17	142	1.01e-22	92.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660690	AT5G64530.2	50.806	124	54	3	5	127	1	118	3.03e-36	123
Msa0660690	AT5G64530.1	50.806	124	54	3	5	127	1	118	7.01e-36	123
Msa0660690	AT1G61110.1	39.535	129	70	2	7	128	16	143	1.29e-25	99.8
Msa0660690	AT2G24430.2	43.182	132	64	4	7	129	16	145	8.33e-24	94.7
Msa0660690	AT2G24430.1	43.182	132	64	4	7	129	16	145	8.33e-24	94.7
Msa0660690	AT5G22290.1	36.029	136	79	3	9	137	23	157	1.07e-23	95.1
Msa0660690	AT1G01720.1	37.500	136	73	4	1	128	1	132	4.26e-23	92.4
Msa0660690	AT5G07680.2	41.860	129	64	4	7	127	3	128	1.78e-22	91.3
Msa0660690	AT5G07680.1	41.860	129	64	4	7	127	17	142	2.04e-22	91.3
Msa0660690	AT3G04060.1	39.098	133	71	3	3	127	16	146	2.70e-22	91.3

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Find 79 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCGATGATGATGACAG+TGG	0.723595	4_3:-71675267	Msa0660690:three_prime_UTR
AAGAACATGTATCCTCAAGA+AGG	0.582925	4_3:-71675303	Msa0660690:three_prime_UTR
AAGTACCTATTATTCCACAT+TGG	0.679443	4_3:-71675617	Msa0660690:CDS
AATAAATCCAGTACCGAAAA+TGG	0.244913	4_3:-71675707	Msa0660690:CDS
AATGGATATTGGGAGGAAAT+TGG	0.352799	4_3:-71675689	Msa0660690:CDS
AATTAGATGAAATGCTTGGA+AGG	0.552950	4_3:+71674929	None:intergenic
AATTATGGTATATAGGACTG+GGG	0.719616	4_3:+71674902	None:intergenic
AATTCAAATATATCCTTGAA+TGG	0.375129	4_3:-71676308	Msa0660690:exon
ACAAAGTTCTGAAACAAGTT+GGG	0.512054	4_3:-71675585	Msa0660690:CDS
ACAGATAAGGCATTGTGCGG+TGG	0.648627	4_3:-71675767	Msa0660690:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTTAGAATAGAGAAAATGA+AGG	+	chr4_3:71674984-71675003	None:intergenic	30.0%
TTCATCGAATATTCATGCAT+TGG	+	chr4_3:71675388-71675407	None:intergenic	30.0%
AAGTACCTATTATTCCACAT+TGG	-	chr4_3:71675591-71675610	Msa0660690:CDS	30.0%
TTCATATCATGGTGATAAAG+TGG	-	chr4_3:71675695-71675714	Msa0660690:CDS	30.0%
ATGCATACATATAACTACTG+AGG	+	chr4_3:71676040-71676059	None:intergenic	30.0%
AATTAGATGAAATGCTTGGA+AGG	+	chr4_3:71676282-71676301	None:intergenic	30.0%
AATTATGGTATATAGGACTG+GGG	+	chr4_3:71676309-71676328	None:intergenic	30.0%
CCTTAGAATAGAGAAAATGA+AGG	+	chr4_3:71674984-71675003	None:intergenic	30.0%
TTCATCGAATATTCATGCAT+TGG	+	chr4_3:71675388-71675407	None:intergenic	30.0%
AAGTACCTATTATTCCACAT+TGG	-	chr4_3:71675591-71675610	Msa0660690:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	71674859	71676371	71674859	ID=Msa0660690;Name=Msa0660690
chr4_3	mRNA	71674859	71676371	71674859	ID=Msa0660690-mRNA-1;Parent=Msa0660690;Name=Msa0660690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=60\|1\|1\|1\|1\|1\|2\|613\|157
chr4_3	exon	71674859	71675785	71674859	ID=Msa0660690-mRNA-1:exon:21434;Parent=Msa0660690-mRNA-1
chr4_3	exon	71676152	71676371	71676152	ID=Msa0660690-mRNA-1:exon:21433;Parent=Msa0660690-mRNA-1
chr4_3	five_prime_UTR	71676312	71676371	71676312	ID=Msa0660690-mRNA-1:five_prime_utr;Parent=Msa0660690-mRNA-1
chr4_3	CDS	71676152	71676311	71676152	ID=Msa0660690-mRNA-1:cds;Parent=Msa0660690-mRNA-1
chr4_3	CDS	71675472	71675785	71675472	ID=Msa0660690-mRNA-1:cds;Parent=Msa0660690-mRNA-1
chr4_3	three_prime_UTR	71674859	71675471	71674859	ID=Msa0660690-mRNA-1:three_prime_utr;Parent=Msa0660690-mRNA-1

Gene Sequence

>Msa0660690

ATGGGAGATATTGTCAAGCTTCCTCCTGGGTTTGTCTTCTCTCCAACAGATGAAGAACTTATCCTTCATTTTCTCTATTCTAAGGCTTCTCTTATTCAATCTCATCCAAACTTCATCCCTGATCTAGATCTGTCTCTACTTGTTCCTTGGGAATTAAATGATAAGGCATTGTGCGGTGGAAATGATGAATACTATTTCTTCGCCAAAGTGAAGGAAAATAAATCCAGTACCGAAAATGGATATTGGGAGGAAATTGGTGTTACAGTACCAATATTTTCAGGCACTGACCAGAAAGTGGGAATGAAGAAGTACCTATTATTCCACATTGGCGAATTAGCACAAAGTTCTGAAACAAGTTGGGTAATGCAAGAATATCATATTTGCTCCTCTGGATTTGATCAAAGTACTGTTTCATATCATGGTGATAAAGTGGTAAGTGACATTATTTATTTTGACAATAAGCTAATAAAATGA

Protein sequence

>Msa0660690

MGDIVKLPPGFVFSPTDEELILHFLYSKASLIQSHPNFIPDLDLSLLVPWELNDKALCGGNDEYYFFAKVKENKSSTENGYWEEIGVTVPIFSGTDQKVGMKKYLLFHIGELAQSSETSWVMQEYHICSSGFDQSTVSYHGDKVVSDIIYFDNKLIK*