Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378460 | XP_003602691.1 | 89.796 | 735 | 61 | 2 | 1 | 730 | 1 | 726 | 0.0 | 1286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378460 | sp|Q9MA92|FPP3_ARATH | 42.006 | 688 | 312 | 14 | 1 | 674 | 1 | 615 | 4.63e-130 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378460 | G7J2M7 | 89.796 | 735 | 61 | 2 | 1 | 730 | 1 | 726 | 0.0 | 1286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0378460 | Msa0518610 | 0.802605 | 5.182076e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378460 | MtrunA17_Chr3g0130811 | 89.796 | 735 | 61 | 2 | 1 | 730 | 1 | 726 | 0.0 | 1286 |
| Msa0378460 | MtrunA17_Chr8g0384881 | 62.380 | 521 | 152 | 6 | 1 | 501 | 1 | 497 | 0.0 | 560 |
| Msa0378460 | MtrunA17_Chr8g0384881 | 54.864 | 257 | 109 | 4 | 474 | 727 | 379 | 631 | 1.01e-69 | 240 |
| Msa0378460 | MtrunA17_Chr1g0159951 | 41.850 | 681 | 331 | 15 | 68 | 725 | 147 | 785 | 1.55e-122 | 386 |
| Msa0378460 | MtrunA17_Chr3g0142411 | 42.035 | 226 | 108 | 3 | 64 | 266 | 93 | 318 | 6.30e-37 | 149 |
| Msa0378460 | MtrunA17_Chr1g0156371 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 1.27e-33 | 139 |
| Msa0378460 | MtrunA17_Chr5g0405291 | 33.223 | 301 | 168 | 5 | 1 | 268 | 1 | 301 | 1.85e-30 | 128 |
| Msa0378460 | MtrunA17_Chr4g0053121 | 33.916 | 286 | 130 | 6 | 1 | 258 | 1 | 255 | 1.20e-28 | 123 |
| Msa0378460 | MtrunA17_Chr5g0401911 | 28.467 | 411 | 215 | 13 | 1 | 389 | 1 | 354 | 5.55e-23 | 104 |
| Msa0378460 | MtrunA17_Chr4g0044561 | 28.571 | 280 | 149 | 9 | 1 | 266 | 1 | 243 | 7.23e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378460 | AT3G05270.3 | 42.006 | 688 | 312 | 14 | 1 | 674 | 1 | 615 | 4.70e-131 | 402 |
| Msa0378460 | AT3G05270.2 | 42.006 | 688 | 312 | 14 | 1 | 674 | 1 | 615 | 4.70e-131 | 402 |
| Msa0378460 | AT3G05270.1 | 42.006 | 688 | 312 | 14 | 1 | 674 | 1 | 615 | 4.70e-131 | 402 |
| Msa0378460 | AT1G21810.3 | 36.677 | 638 | 274 | 23 | 79 | 686 | 13 | 550 | 1.34e-73 | 251 |
| Msa0378460 | AT1G21810.1 | 36.677 | 638 | 274 | 23 | 79 | 686 | 13 | 550 | 1.34e-73 | 251 |
| Msa0378460 | AT1G77580.1 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 9.60e-70 | 240 |
| Msa0378460 | AT1G77580.4 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 2.08e-68 | 239 |
| Msa0378460 | AT1G77580.4 | 34.007 | 297 | 160 | 12 | 381 | 674 | 394 | 657 | 1.80e-12 | 71.2 |
| Msa0378460 | AT1G77580.2 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 2.55e-68 | 240 |
| Msa0378460 | AT1G77580.2 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 1.33e-12 | 72.0 |
| Msa0378460 | AT1G77580.3 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 2.55e-68 | 240 |
| Msa0378460 | AT1G77580.3 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 1.33e-12 | 72.0 |
| Msa0378460 | AT1G21810.2 | 33.840 | 526 | 234 | 23 | 211 | 703 | 3 | 447 | 6.34e-40 | 154 |
| Msa0378460 | AT1G19835.6 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.24e-38 | 154 |
| Msa0378460 | AT1G19835.5 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.24e-38 | 154 |
| Msa0378460 | AT1G19835.3 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.24e-38 | 154 |
| Msa0378460 | AT1G19835.1 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.24e-38 | 154 |
| Msa0378460 | AT1G19835.4 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.24e-38 | 154 |
| Msa0378460 | AT1G19835.2 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.24e-38 | 154 |
| Msa0378460 | AT4G36120.2 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 3.61e-31 | 131 |
| Msa0378460 | AT4G36120.1 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 3.61e-31 | 131 |
| Msa0378460 | AT1G47900.3 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.43e-28 | 122 |
| Msa0378460 | AT1G47900.1 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.43e-28 | 122 |
| Msa0378460 | AT1G47900.2 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.57e-28 | 122 |
| Msa0378460 | AT2G23360.1 | 29.758 | 289 | 143 | 5 | 1 | 266 | 1 | 252 | 7.39e-17 | 85.5 |
Find 157 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGGACCATTTGTGGATTT+TGG | 0.129346 | 3_1:-79274491 | None:intergenic |
| TTGCAAACAACTCTTGTAAT+TGG | 0.137119 | 3_1:+79276383 | Msa0378460:CDS |
| CCACTCAAGCTCGTCTCTTT+TGG | 0.200759 | 3_1:-79276410 | None:intergenic |
| GGCTTTGTCTGCTGATAATT+TGG | 0.210676 | 3_1:+79277683 | Msa0378460:CDS |
| CTGCTTTACCAAATCTTCTT+TGG | 0.249118 | 3_1:-79275919 | None:intergenic |
| AAGAGAAAGCAAGCAATATT+TGG | 0.255370 | 3_1:+79276624 | Msa0378460:CDS |
| TCAGGGTGGAGGCGTGAAAT+TGG | 0.256871 | 3_1:+79274607 | Msa0378460:five_prime_UTR |
| GTAATACCTCGAGCTGCTTT+TGG | 0.280342 | 3_1:-79277167 | None:intergenic |
| AGTCTCATAGACGGTTTAAA+TGG | 0.285979 | 3_1:+79278635 | Msa0378460:three_prime_UTR |
| TGCTTTCTCTTTCTGCAGCT+TGG | 0.289852 | 3_1:-79276612 | None:intergenic |
| GCTTTCTCTTTCTGCAGCTT+GGG | 0.293528 | 3_1:-79276611 | None:intergenic |
| CTAAATCCATCTATTAGCTT+TGG | 0.314378 | 3_1:+79278300 | Msa0378460:CDS |
| GTCTGCTTCAATTACAGAAT+TGG | 0.315854 | 3_1:+79276885 | Msa0378460:CDS |
| GATCAAGTTAGTCATCTTAA+TGG | 0.317493 | 3_1:+79276289 | Msa0378460:CDS |
| TGATCTTCTGCAGAGGCTTC+AGG | 0.318270 | 3_1:+79276498 | Msa0378460:CDS |
| GCAGTATTTCAGTGTCTTGA+TGG | 0.319413 | 3_1:-79277761 | None:intergenic |
| TGTTCTGCTTAAGACCTTGT+AGG | 0.321070 | 3_1:-79278354 | None:intergenic |
| ATCAAGTTAGTCATCTTAAT+GGG | 0.324475 | 3_1:+79276290 | Msa0378460:CDS |
| CATTAGTGCCAAAGAAGATT+TGG | 0.331279 | 3_1:+79275911 | Msa0378460:CDS |
| GCAGCCTCGGAAATGACTTC+TGG | 0.331994 | 3_1:-79275822 | None:intergenic |
| CAGGGTGGAGGCGTGAAATT+GGG | 0.334375 | 3_1:+79274608 | Msa0378460:five_prime_UTR |
| TCATCGCCATCTTGGGGAGC+TGG | 0.334781 | 3_1:-79278234 | None:intergenic |
| CAAACTCCTTCCCGGCAAAA+AGG | 0.338349 | 3_1:-79278524 | None:intergenic |
| CAACTGCTCATCGCCATCTT+GGG | 0.340039 | 3_1:-79278241 | None:intergenic |
| GGAGAAGAAGCTAGCGAAAA+TGG | 0.341125 | 3_1:+79277104 | Msa0378460:CDS |
| GGTTGGTCTGATGCAGTATC+TGG | 0.344154 | 3_1:-79277012 | None:intergenic |
| ACTGATGTGCATACTCTAAC+TGG | 0.369885 | 3_1:+79275864 | Msa0378460:CDS |
| TCAACTGCTCATCGCCATCT+TGG | 0.374863 | 3_1:-79278242 | None:intergenic |
| GACAGCTTCTTCAGCAACTT+TGG | 0.380920 | 3_1:-79275946 | None:intergenic |
| ACAGATAGCATGTCAGATAA+TGG | 0.389217 | 3_1:+79276772 | Msa0378460:CDS |
| TCTGAGTTGAAAGGCCTATA+CGG | 0.395548 | 3_1:-79276942 | None:intergenic |
| TACAAGGTCTTAAGCAGAAC+AGG | 0.406232 | 3_1:+79278356 | Msa0378460:exon |
| GATGGATGATTTCCTCGAAA+TGG | 0.408615 | 3_1:+79276972 | Msa0378460:CDS |
| TTCCCTGGCCAACATTTGGT+TGG | 0.409152 | 3_1:-79277029 | None:intergenic |
| CAGCAAGCCTTTCCATTTCG+AGG | 0.412193 | 3_1:-79276984 | None:intergenic |
| GCATGATTCAAACTCCTTCC+CGG | 0.419206 | 3_1:-79278532 | None:intergenic |
| TGCAAACAACTCTTGTAATT+GGG | 0.422194 | 3_1:+79276384 | Msa0378460:CDS |
| TGTGAATGACTCTGCATAAA+CGG | 0.424603 | 3_1:-79276752 | None:intergenic |
| TCTGTTCCCTGGCCAACATT+TGG | 0.426822 | 3_1:-79277033 | None:intergenic |
| TCATCTTAATGGGGAACTAA+AGG | 0.428665 | 3_1:+79276300 | Msa0378460:CDS |
| CTGCATAGGGAAGGTGTTGA+TGG | 0.429525 | 3_1:+79277780 | Msa0378460:CDS |
| GGCCATGAGTCATAATGCTT+TGG | 0.432790 | 3_1:-79276862 | None:intergenic |
| CATCGCCATCTTGGGGAGCT+GGG | 0.435328 | 3_1:-79278233 | None:intergenic |
| GAAAGTGATATGCGCAAATT+CGG | 0.437012 | 3_1:+79276814 | Msa0378460:CDS |
| ACTTGATTCAGAGGACACTA+TGG | 0.441112 | 3_1:+79278188 | Msa0378460:CDS |
| TAAAATTCAAAACCATTGAA+TGG | 0.442991 | 3_1:+79276578 | Msa0378460:CDS |
| TTTGTTTACTCTCGAATTCA+GGG | 0.446048 | 3_1:+79274590 | Msa0378460:five_prime_UTR |
| TTTGGCCAAGTGTGAAAAGT+TGG | 0.448967 | 3_1:+79277701 | Msa0378460:CDS |
| CTCTTCATTTGACGCAGCCT+CGG | 0.453100 | 3_1:-79275835 | None:intergenic |
| AAAATTCAAAACCATTGAAT+GGG | 0.454203 | 3_1:+79276579 | Msa0378460:CDS |
| GGTGCTCAAATCCCATTCAA+TGG | 0.455832 | 3_1:-79276590 | None:intergenic |
| TCTGCAGAGGCTTCAGGATG+TGG | 0.457307 | 3_1:+79276504 | Msa0378460:CDS |
| GTTGAAGTCCCTTGCAACAT+TGG | 0.462272 | 3_1:+79278155 | Msa0378460:CDS |
| AACGGTTATGTGGAGTGAAA+GGG | 0.467551 | 3_1:-79274675 | None:intergenic |
| TAGGAGGTAGGGACCATTTG+TGG | 0.467918 | 3_1:-79274498 | None:intergenic |
| TAACGGTTATGTGGAGTGAA+AGG | 0.469155 | 3_1:-79274676 | None:intergenic |
| AAGATTATCTGCTCATGATC+AGG | 0.469911 | 3_1:+79274951 | Msa0378460:CDS |
| ACGTGTATAAATCTAAACTT+AGG | 0.476551 | 3_1:+79278446 | Msa0378460:three_prime_UTR |
| AGACCAACCAAATGTTGGCC+AGG | 0.478188 | 3_1:+79277026 | Msa0378460:CDS |
| AGAAGAACTGTGAGTTTCAC+TGG | 0.479117 | 3_1:-79274905 | None:intergenic |
| TAACACCCAAAATCCACAAA+TGG | 0.482594 | 3_1:+79274485 | None:intergenic |
| AGATAATGGAGAGAGGCTAT+TGG | 0.482617 | 3_1:+79276786 | Msa0378460:CDS |
| AGTTGTTTGCAACAGCTTCA+AGG | 0.483000 | 3_1:-79276372 | None:intergenic |
| CCGGGTAAAGGAAGCAGAGT+TGG | 0.490552 | 3_1:+79277194 | Msa0378460:CDS |
| TACTCTCGAATTCAGGGTGG+AGG | 0.498969 | 3_1:+79274596 | Msa0378460:five_prime_UTR |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.501906 | 3_1:+79275951 | Msa0378460:CDS |
| CATACACTGTGTCTGTTCCC+TGG | 0.502835 | 3_1:-79277044 | None:intergenic |
| GGTATCACAAAGTCGGGTAA+AGG | 0.503164 | 3_1:+79277464 | Msa0378460:CDS |
| AGCTCGAGGTATTACAAGGC+CGG | 0.505834 | 3_1:+79277175 | Msa0378460:CDS |
| ACCACTGCACAAAACCGTAT+AGG | 0.506505 | 3_1:+79276928 | Msa0378460:CDS |
| GCTCAAGGTATCACAAAGTC+GGG | 0.506661 | 3_1:+79277458 | Msa0378460:CDS |
| TCGGGTAAAGGAAGCGGAGT+TGG | 0.507512 | 3_1:+79277476 | Msa0378460:CDS |
| TATAGATGGAACGAAGGAGT+TGG | 0.511290 | 3_1:+79274851 | Msa0378460:intron |
| CCAAAAGAGACGAGCTTGAG+TGG | 0.515425 | 3_1:+79276410 | Msa0378460:CDS |
| TTCAACTCAGATCGATCTGA+TGG | 0.516137 | 3_1:+79276954 | Msa0378460:CDS |
| CACTAATGTTATGTCATGGA+CGG | 0.516597 | 3_1:-79278568 | None:intergenic |
| ATATGCGCAAATTCGGAGGC+AGG | 0.518093 | 3_1:+79276821 | Msa0378460:CDS |
| TTGGTAGGTTCTATCCTACA+AGG | 0.519182 | 3_1:+79278340 | Msa0378460:CDS |
| TGAATTCGAGAGTAAACAAA+AGG | 0.521371 | 3_1:-79274587 | None:intergenic |
| AACTGCTCATCGCCATCTTG+GGG | 0.521463 | 3_1:-79278240 | None:intergenic |
| GGTATTACAAGGCCGGGTAA+AGG | 0.522637 | 3_1:+79277182 | Msa0378460:CDS |
| ACAGGAAGACATTGTAAAAG+AGG | 0.528423 | 3_1:+79278374 | Msa0378460:three_prime_UTR |
| GAGCCACGACATTCAATCTC+TGG | 0.528546 | 3_1:-79276684 | None:intergenic |
| AGACAGGGACAAATAATTGA+AGG | 0.530202 | 3_1:-79274545 | None:intergenic |
| AGGAAGAGATTGACAAAGAG+CGG | 0.530251 | 3_1:+79277379 | Msa0378460:CDS |
| AGACACTGAAATACTGCATA+GGG | 0.534338 | 3_1:+79277767 | Msa0378460:CDS |
| CATTCTCTGTCAACGATCGC+AGG | 0.538257 | 3_1:+79276713 | Msa0378460:CDS |
| GGTAAAGGAAGCGGAGTTGG+AGG | 0.539727 | 3_1:+79277479 | Msa0378460:CDS |
| AGGAAGAGATTGAGAAAGAG+CGG | 0.539922 | 3_1:+79277661 | Msa0378460:CDS |
| ATGTGGAGTGAAAGGGATGA+GGG | 0.540250 | 3_1:-79274668 | None:intergenic |
| CGGAAAACCATCGAATCTCT+AGG | 0.540417 | 3_1:+79278126 | Msa0378460:CDS |
| AGCTCAAGGTATCACAAAGT+CGG | 0.543179 | 3_1:+79277457 | Msa0378460:CDS |
| GGTTCAAAAGAATGATGCAT+TGG | 0.543300 | 3_1:+79277083 | Msa0378460:CDS |
| GGGAACTAAAGGATTGTATG+AGG | 0.545681 | 3_1:+79276311 | Msa0378460:CDS |
| GTGGAAAGTTACTGAGCTTG+AGG | 0.546401 | 3_1:+79276429 | Msa0378460:CDS |
| ATTATATTTAGGCTGGGAGA+AGG | 0.546698 | 3_1:+79276198 | Msa0378460:intron |
| ACTAATGTTATGTCATGGAC+GGG | 0.547239 | 3_1:-79278567 | None:intergenic |
| CTGCTGTCCTAGAGATTCGA+TGG | 0.547891 | 3_1:-79278133 | None:intergenic |
| GAGGCTTCAGGATGTGGAGA+GGG | 0.549030 | 3_1:+79276510 | Msa0378460:CDS |
| TATGTGGAGTGAAAGGGATG+AGG | 0.549470 | 3_1:-79274669 | None:intergenic |
| AGACACAGTGTATGCTGAAG+TGG | 0.551827 | 3_1:+79277053 | Msa0378460:CDS |
| GCAGGAGAAGGAACTAGCAT+TGG | 0.555868 | 3_1:+79278080 | Msa0378460:intron |
| AGACTTCATACTTGATTCAG+AGG | 0.557101 | 3_1:+79278179 | Msa0378460:CDS |
| TCGGAAATGACTTCTGGAGA+TGG | 0.558364 | 3_1:-79275816 | None:intergenic |
| ACAAAGTCGGGTAAAGGAAG+CGG | 0.558654 | 3_1:+79277470 | Msa0378460:CDS |
| AACCAAAGCATTATGACTCA+TGG | 0.559723 | 3_1:+79276860 | Msa0378460:CDS |
| CGAGGCTGCGTCAAATGAAG+AGG | 0.560290 | 3_1:+79275836 | Msa0378460:CDS |
| GGTAAAGGAAGCAGAGTTGG+AGG | 0.562324 | 3_1:+79277197 | Msa0378460:CDS |
| GGAAGAGATTGACAAAGAGC+GGG | 0.567707 | 3_1:+79277380 | Msa0378460:CDS |
| CCAACTCTGCTTCCTTTACC+CGG | 0.569027 | 3_1:-79277194 | None:intergenic |
| TGGCGAGTTAATGTTCAAGC+AGG | 0.569151 | 3_1:+79277800 | Msa0378460:CDS |
| GCTCGAGGTATTACAAGGCC+GGG | 0.574482 | 3_1:+79277176 | Msa0378460:CDS |
| TGCAGATAAACTCGAGCTAG+AGG | 0.575538 | 3_1:+79277410 | Msa0378460:CDS |
| GGAAGAGATTGAGAAAGAGC+GGG | 0.579765 | 3_1:+79277662 | Msa0378460:CDS |
| TGATTAGTTAGTCTCATAGA+CGG | 0.580950 | 3_1:+79278626 | Msa0378460:three_prime_UTR |
| AAGACACTGAAATACTGCAT+AGG | 0.582843 | 3_1:+79277766 | Msa0378460:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3_1:+79277323 | Msa0378460:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3_1:+79277605 | Msa0378460:CDS |
| GGAGGCAGGGAGATAAATGA+AGG | 0.583949 | 3_1:+79276835 | Msa0378460:CDS |
| AAAACACTAATGTTATGTCA+TGG | 0.588393 | 3_1:-79278572 | None:intergenic |
| ATGATTTCCTCGAAATGGAA+AGG | 0.588479 | 3_1:+79276977 | Msa0378460:CDS |
| TGAAGTCTTCCAATGTTGCA+AGG | 0.589752 | 3_1:-79278164 | None:intergenic |
| TATTATTATAGATGGAACGA+AGG | 0.591091 | 3_1:+79274845 | Msa0378460:intron |
| AAGCAGCTCGAGGTATTACA+AGG | 0.592236 | 3_1:+79277171 | Msa0378460:CDS |
| TGGAACGAAGGAGTTGGATG+TGG | 0.592305 | 3_1:+79274857 | Msa0378460:CDS |
| ACAAACCCAGCTCCCCAAGA+TGG | 0.595348 | 3_1:+79278228 | Msa0378460:CDS |
| AGGGTGGAGGCGTGAAATTG+GGG | 0.597128 | 3_1:+79274609 | Msa0378460:five_prime_UTR |
| TCAGATCGATCTGAGTTGAA+AGG | 0.599108 | 3_1:-79276951 | None:intergenic |
| GCATCAGACCAACCAAATGT+TGG | 0.607554 | 3_1:+79277021 | Msa0378460:CDS |
| TAATGGAGAGAGGCTATTGG+TGG | 0.608912 | 3_1:+79276789 | Msa0378460:CDS |
| AGAACCTACCAAAACTGAAG+TGG | 0.609934 | 3_1:-79278329 | None:intergenic |
| GACCAACCAAATGTTGGCCA+GGG | 0.612070 | 3_1:+79277027 | Msa0378460:CDS |
| GAAGTCTTCCAATGTTGCAA+GGG | 0.615238 | 3_1:-79278163 | None:intergenic |
| AGAGGCTTCAGGATGTGGAG+AGG | 0.619121 | 3_1:+79276509 | Msa0378460:CDS |
| GGCACTAATGTCTAAGAGAG+CGG | 0.621884 | 3_1:-79275898 | None:intergenic |
| TGGAGATGGAACAGTTTGAG+TGG | 0.623998 | 3_1:-79275802 | None:intergenic |
| AGATAAAATTGAGCTAGAGA+TGG | 0.626676 | 3_1:+79277131 | Msa0378460:CDS |
| GTATGCTGAAGTGGAAGCAT+TGG | 0.628182 | 3_1:+79277062 | Msa0378460:CDS |
| ATCTCCAGAAGTCATTTCCG+AGG | 0.630862 | 3_1:+79275818 | Msa0378460:CDS |
| GAGAGCTGCTCAAACTGAGG+CGG | 0.637369 | 3_1:+79277326 | Msa0378460:CDS |
| TTAACTCTGATCTTCTGCAG+AGG | 0.638024 | 3_1:+79276491 | Msa0378460:CDS |
| AGTGATATGCGCAAATTCGG+AGG | 0.644549 | 3_1:+79276817 | Msa0378460:CDS |
| TTTGGAGAGTATAACGAAGG+TGG | 0.647288 | 3_1:+79276642 | Msa0378460:CDS |
| TATGCGCAAATTCGGAGGCA+GGG | 0.647344 | 3_1:+79276822 | Msa0378460:CDS |
| AATTCTGTAATTGAAGCAGA+CGG | 0.653774 | 3_1:-79276883 | None:intergenic |
| AGATAAACTCGAGCTAGAGG+TGG | 0.661721 | 3_1:+79277413 | Msa0378460:CDS |
| TGAACTACAATCTCGACTCG+AGG | 0.662262 | 3_1:+79276552 | Msa0378460:CDS |
| TCAAGTTAGTCATCTTAATG+GGG | 0.667984 | 3_1:+79276291 | Msa0378460:CDS |
| TGCTGCAAAACAGCAGAATG+CGG | 0.670569 | 3_1:+79276258 | Msa0378460:CDS |
| GCATGTCAGATAATGGAGAG+AGG | 0.673908 | 3_1:+79276779 | Msa0378460:CDS |
| CGAGTGCCAAAAGCAGCTCG+AGG | 0.681288 | 3_1:+79277161 | Msa0378460:CDS |
| ACTGAAATACTGCATAGGGA+AGG | 0.684433 | 3_1:+79277771 | Msa0378460:CDS |
| GTGCCAGAGATTGAATGTCG+TGG | 0.689035 | 3_1:+79276681 | Msa0378460:CDS |
| ACTAATGTCTAAGAGAGCGG+CGG | 0.698941 | 3_1:-79275895 | None:intergenic |
| GTTTACTCTCGAATTCAGGG+TGG | 0.699348 | 3_1:+79274593 | Msa0378460:five_prime_UTR |
| GAAGAAGCTAGCGAAAATGG+AGG | 0.702295 | 3_1:+79277107 | Msa0378460:CDS |
| ATATTTGGAGAGTATAACGA+AGG | 0.713817 | 3_1:+79276639 | Msa0378460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTATTATTATTATAGA+TGG | + | chr3_1:79274837-79274856 | Msa0378460:intron | 10.0% |
| !! | TTAGAATTGAATATTATTTA+AGG | - | chr3_1:79275468-79275487 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATAAACCATAA+CGG | - | chr3_1:79276107-79276126 | None:intergenic | 10.0% |
| !!! | AGTTATTTTAGATATTAAGT+TGG | + | chr3_1:79274804-79274823 | Msa0378460:intron | 15.0% |
| !!! | TTACATGATTTTAAGTTTAT+AGG | + | chr3_1:79275624-79275643 | Msa0378460:intron | 15.0% |
| !!! | CATTGTTTTATTTTATTCTA+CGG | + | chr3_1:79275658-79275677 | Msa0378460:intron | 15.0% |
| !!! | GCTTAGAATTTACTTTTTAA+CGG | - | chr3_1:79274696-79274715 | None:intergenic | 20.0% |
| !!! | TTAACTTCTATTTTCAATAC+AGG | + | chr3_1:79275000-79275019 | Msa0378460:intron | 20.0% |
| !!! | ATTCAACAAGGTTTTTAATA+GGG | - | chr3_1:79275580-79275599 | None:intergenic | 20.0% |
| !! | AATGAAGGAGAAATTTAAAA+TGG | - | chr3_1:79275991-79276010 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTCTCCTTCATT+TGG | + | chr3_1:79275991-79276010 | Msa0378460:intron | 20.0% |
| !! | ATATTTGATTATATTTAGGC+TGG | + | chr3_1:79276191-79276210 | Msa0378460:intron | 20.0% |
| !! | TATTTGATTATATTTAGGCT+GGG | + | chr3_1:79276192-79276211 | Msa0378460:intron | 20.0% |
| !! | TAAAATTCAAAACCATTGAA+TGG | + | chr3_1:79276578-79276597 | Msa0378460:CDS | 20.0% |
| !! | AAAATTCAAAACCATTGAAT+GGG | + | chr3_1:79276579-79276598 | Msa0378460:CDS | 20.0% |
| !!! | AGTTAAAATTTTAACATGTG+AGG | + | chr3_1:79277966-79277985 | Msa0378460:intron | 20.0% |
| !!! | CAAAATTCCAAAATATTTTC+TGG | - | chr3_1:79278001-79278020 | None:intergenic | 20.0% |
| !!! | CAGAAAATATTTTGGAATTT+TGG | + | chr3_1:79277999-79278018 | Msa0378460:intron | 20.0% |
| !!! | TCATAAACCATCTTATATTT+TGG | + | chr3_1:79278046-79278065 | Msa0378460:intron | 20.0% |
| ! | AAAAACAAAAACATCATAGG+AGG | - | chr3_1:79274517-79274536 | None:intergenic | 25.0% |
| ! | CAGAAAAACAAAAACATCAT+AGG | - | chr3_1:79274520-79274539 | None:intergenic | 25.0% |
| ! | TCATCACTAATTAAAAGACA+GGG | - | chr3_1:79274563-79274582 | None:intergenic | 25.0% |
| ! | ATCATCACTAATTAAAAGAC+AGG | - | chr3_1:79274564-79274583 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTAACGGTTATG+TGG | - | chr3_1:79274688-79274707 | None:intergenic | 25.0% |
| !! | TCTTTTTATATATTAGCACC+AGG | + | chr3_1:79274757-79274776 | Msa0378460:intron | 25.0% |
| ! | TATTATTATAGATGGAACGA+AGG | + | chr3_1:79274845-79274864 | Msa0378460:intron | 25.0% |
| ! | TAGTAACTAGTAACCATATT+TGG | + | chr3_1:79275093-79275112 | Msa0378460:intron | 25.0% |
| !!! | AGGTTGTCATTTTTGTTAAT+AGG | + | chr3_1:79275122-79275141 | Msa0378460:intron | 25.0% |
| ! | CTCTCATTAAAACAAAATTG+AGG | + | chr3_1:79275201-79275220 | Msa0378460:intron | 25.0% |
| !! | GATTCAACAAGGTTTTTAAT+AGG | - | chr3_1:79275581-79275600 | None:intergenic | 25.0% |
| ! | AATCAGACCAAAAAACAAAA+AGG | - | chr3_1:79276060-79276079 | None:intergenic | 25.0% |
| ! | ACCTAATATCATCTAAACAT+AGG | + | chr3_1:79276138-79276157 | Msa0378460:intron | 25.0% |
| ! | ACCTATGTTTAGATGATATT+AGG | - | chr3_1:79276142-79276161 | None:intergenic | 25.0% |
| ! | ATCTAAACATAGGTTATCAA+AGG | + | chr3_1:79276148-79276167 | Msa0378460:intron | 25.0% |
| ! | ATCAAGTTAGTCATCTTAAT+GGG | + | chr3_1:79276290-79276309 | Msa0378460:CDS | 25.0% |
| ! | AATGATGCCAAAATATAAGA+TGG | - | chr3_1:79278056-79278075 | None:intergenic | 25.0% |
| ! | ACGTGTATAAATCTAAACTT+AGG | + | chr3_1:79278446-79278465 | Msa0378460:three_prime_UTR | 25.0% |
| !! | CATAAATTTTTCCTTTTTGC+CGG | + | chr3_1:79278513-79278532 | Msa0378460:three_prime_UTR | 25.0% |
| !! | ATAAATTTTTCCTTTTTGCC+GGG | + | chr3_1:79278514-79278533 | Msa0378460:three_prime_UTR | 25.0% |
| ! | AAAACACTAATGTTATGTCA+TGG | - | chr3_1:79278575-79278594 | None:intergenic | 25.0% |
| TGAATTCGAGAGTAAACAAA+AGG | - | chr3_1:79274590-79274609 | None:intergenic | 30.0% | |
| !! | TTTTGTTTACTCTCGAATTC+AGG | + | chr3_1:79274589-79274608 | Msa0378460:five_prime_UTR | 30.0% |
| TTTGTTTACTCTCGAATTCA+GGG | + | chr3_1:79274590-79274609 | Msa0378460:five_prime_UTR | 30.0% | |
| AATAACGTAGCCAAAAAAAG+AGG | - | chr3_1:79274979-79274998 | None:intergenic | 30.0% | |
| ! | CTTCTATTTTCAATACAGGA+AGG | + | chr3_1:79275004-79275023 | Msa0378460:intron | 30.0% |
| ! | TATTTTCAATACAGGAAGGA+GGG | + | chr3_1:79275008-79275027 | Msa0378460:intron | 30.0% |
| TTCAATGTAATCACATGTGT+CGG | - | chr3_1:79275353-79275372 | None:intergenic | 30.0% | |
| ! | AAGGTTTTTAATAGGGACTT+GGG | - | chr3_1:79275573-79275592 | None:intergenic | 30.0% |
| CTTGTATTCTTGATTCAACA+AGG | - | chr3_1:79275592-79275611 | None:intergenic | 30.0% | |
| AGCAACAATTTGAACAATCA+GGG | - | chr3_1:79275726-79275745 | None:intergenic | 30.0% | |
| AAGCAACAATTTGAACAATC+AGG | - | chr3_1:79275727-79275746 | None:intergenic | 30.0% | |
| ! | AAATTGTTGCTTGTTTGAGA+CGG | + | chr3_1:79275735-79275754 | Msa0378460:intron | 30.0% |
| !!! | GTATCGACCTTTTTGTTTTT+TGG | + | chr3_1:79276050-79276069 | Msa0378460:intron | 30.0% |
| GATCAAGTTAGTCATCTTAA+TGG | + | chr3_1:79276289-79276308 | Msa0378460:CDS | 30.0% | |
| TCAAGTTAGTCATCTTAATG+GGG | + | chr3_1:79276291-79276310 | Msa0378460:CDS | 30.0% | |
| TTGCAAACAACTCTTGTAAT+TGG | + | chr3_1:79276383-79276402 | Msa0378460:CDS | 30.0% | |
| TGCAAACAACTCTTGTAATT+GGG | + | chr3_1:79276384-79276403 | Msa0378460:CDS | 30.0% | |
| AAGAGAAAGCAAGCAATATT+TGG | + | chr3_1:79276624-79276643 | Msa0378460:CDS | 30.0% | |
| ! | ATATTTGGAGAGTATAACGA+AGG | + | chr3_1:79276639-79276658 | Msa0378460:CDS | 30.0% |
| AATTCTGTAATTGAAGCAGA+CGG | - | chr3_1:79276886-79276905 | None:intergenic | 30.0% | |
| AGATAAAATTGAGCTAGAGA+TGG | + | chr3_1:79277131-79277150 | Msa0378460:CDS | 30.0% | |
| !!! | AGCTTTCTCATTTTTTTCTC+GGG | - | chr3_1:79277295-79277314 | None:intergenic | 30.0% |
| !!! | CAGCTTTCTCATTTTTTTCT+CGG | - | chr3_1:79277296-79277315 | None:intergenic | 30.0% |
| !!! | AGCATTCTCATTTTTTGCTT+GGG | - | chr3_1:79277577-79277596 | None:intergenic | 30.0% |
| !!! | CCAAAATATTTTCTGGAATC+TGG | - | chr3_1:79277994-79278013 | None:intergenic | 30.0% |
| ! | CCAGATTCCAGAAAATATTT+TGG | + | chr3_1:79277991-79278010 | Msa0378460:intron | 30.0% |
| ! | CTAAATCCATCTATTAGCTT+TGG | + | chr3_1:79278300-79278319 | Msa0378460:CDS | 30.0% |
| ! | CTTTTTCCAAAGCTAATAGA+TGG | - | chr3_1:79278309-79278328 | None:intergenic | 30.0% |
| ! | TGATTAGTTAGTCTCATAGA+CGG | + | chr3_1:79278626-79278645 | Msa0378460:three_prime_UTR | 30.0% |
| CAAAAACATCATAGGAGGTA+GGG | - | chr3_1:79274512-79274531 | None:intergenic | 35.0% | |
| ACAAAAACATCATAGGAGGT+AGG | - | chr3_1:79274513-79274532 | None:intergenic | 35.0% | |
| AGACAGGGACAAATAATTGA+AGG | - | chr3_1:79274548-79274567 | None:intergenic | 35.0% | |
| TAGAAGTTCATAACTTGACC+TGG | - | chr3_1:79274778-79274797 | None:intergenic | 35.0% | |
| AAGATTATCTGCTCATGATC+AGG | + | chr3_1:79274951-79274970 | Msa0378460:CDS | 35.0% | |
| !!! | TGATCAGGTACCTCTTTTTT+TGG | + | chr3_1:79274966-79274985 | Msa0378460:intron | 35.0% |
| ! | CTATTTTCAATACAGGAAGG+AGG | + | chr3_1:79275007-79275026 | Msa0378460:intron | 35.0% |
| ! | ATTTTCAATACAGGAAGGAG+GGG | + | chr3_1:79275009-79275028 | Msa0378460:intron | 35.0% |
| GTAACCATATTTGGAAGTGA+AGG | + | chr3_1:79275102-79275121 | Msa0378460:intron | 35.0% | |
| ACAACCTTCACTTCCAAATA+TGG | - | chr3_1:79275109-79275128 | None:intergenic | 35.0% | |
| AAGAAGAAGAAGAGAGATTG+AGG | + | chr3_1:79275151-79275170 | Msa0378460:intron | 35.0% | |
| AGAAGAAGAAGAGAGATTGA+GGG | + | chr3_1:79275152-79275171 | Msa0378460:intron | 35.0% | |
| ! | GAGGGAAAGCTAAAATGTTT+TGG | + | chr3_1:79275170-79275189 | Msa0378460:intron | 35.0% |
| !! | GCACCAATACTTTTGATTGA+AGG | + | chr3_1:79275289-79275308 | Msa0378460:intron | 35.0% |
| ! | ACGCCTTCAATCAAAAGTAT+TGG | - | chr3_1:79275295-79275314 | None:intergenic | 35.0% |
| ! | CAAGGTTTTTAATAGGGACT+TGG | - | chr3_1:79275574-79275593 | None:intergenic | 35.0% |
| AGGGATCTCAAACTTAAAAG+CGG | - | chr3_1:79275707-79275726 | None:intergenic | 35.0% | |
| CATTAGTGCCAAAGAAGATT+TGG | + | chr3_1:79275911-79275930 | Msa0378460:CDS | 35.0% | |
| CTGCTTTACCAAATCTTCTT+TGG | - | chr3_1:79275922-79275941 | None:intergenic | 35.0% | |
| TAAACTTGACAGCCAAATGA+AGG | - | chr3_1:79276006-79276025 | None:intergenic | 35.0% | |
| ATTATATTTAGGCTGGGAGA+AGG | + | chr3_1:79276198-79276217 | Msa0378460:intron | 35.0% | |
| TCATCTTAATGGGGAACTAA+AGG | + | chr3_1:79276300-79276319 | Msa0378460:CDS | 35.0% | |
| TGTGAATGACTCTGCATAAA+CGG | - | chr3_1:79276755-79276774 | None:intergenic | 35.0% | |
| ACAGATAGCATGTCAGATAA+TGG | + | chr3_1:79276772-79276791 | Msa0378460:CDS | 35.0% | |
| GAAAGTGATATGCGCAAATT+CGG | + | chr3_1:79276814-79276833 | Msa0378460:CDS | 35.0% | |
| ! | AACCAAAGCATTATGACTCA+TGG | + | chr3_1:79276860-79276879 | Msa0378460:CDS | 35.0% |
| GTCTGCTTCAATTACAGAAT+TGG | + | chr3_1:79276885-79276904 | Msa0378460:CDS | 35.0% | |
| ATGATTTCCTCGAAATGGAA+AGG | + | chr3_1:79276977-79276996 | Msa0378460:CDS | 35.0% | |
| GGTTCAAAAGAATGATGCAT+TGG | + | chr3_1:79277083-79277102 | Msa0378460:CDS | 35.0% | |
| GATCTCAAAAATCTGTTCAC+TGG | + | chr3_1:79277356-79277375 | Msa0378460:CDS | 35.0% | |
| !!! | CAGCATTCTCATTTTTTGCT+TGG | - | chr3_1:79277578-79277597 | None:intergenic | 35.0% |
| GATCTCAAAAATCTGTTCAC+TGG | + | chr3_1:79277356-79277375 | Msa0378460:CDS | 35.0% | |
| ! | TTCTTCCAACTTTTCACACT+TGG | - | chr3_1:79277709-79277728 | None:intergenic | 35.0% |
| AAGACACTGAAATACTGCAT+AGG | + | chr3_1:79277766-79277785 | Msa0378460:CDS | 35.0% | |
| AGACACTGAAATACTGCATA+GGG | + | chr3_1:79277767-79277786 | Msa0378460:CDS | 35.0% | |
| AATGTTCAAGCAGGTAAGTT+TGG | + | chr3_1:79277809-79277828 | Msa0378460:intron | 35.0% | |
| !! | ATTTTGGCATCATTTGATGC+AGG | + | chr3_1:79278062-79278081 | Msa0378460:intron | 35.0% |
| AGACTTCATACTTGATTCAG+AGG | + | chr3_1:79278179-79278198 | Msa0378460:CDS | 35.0% | |
| ACAGGAAGACATTGTAAAAG+AGG | + | chr3_1:79278374-79278393 | Msa0378460:three_prime_UTR | 35.0% | |
| ACTAATGTTATGTCATGGAC+GGG | - | chr3_1:79278570-79278589 | None:intergenic | 35.0% | |
| CACTAATGTTATGTCATGGA+CGG | - | chr3_1:79278571-79278590 | None:intergenic | 35.0% | |
| ! | TAGGGACCATTTGTGGATTT+TGG | - | chr3_1:79274494-79274513 | None:intergenic | 40.0% |
| AACGGTTATGTGGAGTGAAA+GGG | - | chr3_1:79274678-79274697 | None:intergenic | 40.0% | |
| TAACGGTTATGTGGAGTGAA+AGG | - | chr3_1:79274679-79274698 | None:intergenic | 40.0% | |
| TATAGATGGAACGAAGGAGT+TGG | + | chr3_1:79274851-79274870 | Msa0378460:intron | 40.0% | |
| AGAAGAACTGTGAGTTTCAC+TGG | - | chr3_1:79274908-79274927 | None:intergenic | 40.0% | |
| AGCTAGCTGTTCTTTGTGTT+TGG | + | chr3_1:79275044-79275063 | Msa0378460:intron | 40.0% | |
| GCTAGCTGTTCTTTGTGTTT+GGG | + | chr3_1:79275045-79275064 | Msa0378460:intron | 40.0% | |
| CTAGCTGTTCTTTGTGTTTG+GGG | + | chr3_1:79275046-79275065 | Msa0378460:intron | 40.0% | |
| CTAGTTACTACTACTACCCT+GGG | - | chr3_1:79275083-79275102 | None:intergenic | 40.0% | |
| ACTAGTTACTACTACTACCC+TGG | - | chr3_1:79275084-79275103 | None:intergenic | 40.0% | |
| !! | CAAAAGTATTGGTGCTACAG+AGG | - | chr3_1:79275284-79275303 | None:intergenic | 40.0% |
| CAAGCTATGAAGCACAAACA+CGG | - | chr3_1:79275425-79275444 | None:intergenic | 40.0% | |
| ! | ATGCCACTTAAATACTCCAC+CGG | + | chr3_1:79275498-79275517 | Msa0378460:intron | 40.0% |
| ! | TAGTATGACTATGAGGTGTC+CGG | - | chr3_1:79275520-79275539 | None:intergenic | 40.0% |
| ATAGGGACTTGGGTATTATG+AGG | - | chr3_1:79275563-79275582 | None:intergenic | 40.0% | |
| AACTTAAAAGCGGACAGAAC+AGG | - | chr3_1:79275697-79275716 | None:intergenic | 40.0% | |
| ACTGATGTGCATACTCTAAC+TGG | + | chr3_1:79275864-79275883 | Msa0378460:CDS | 40.0% | |
| ! | TTCAAGTTCTGTCTCCGTTA+TGG | + | chr3_1:79276090-79276109 | Msa0378460:intron | 40.0% |
| GGGAACTAAAGGATTGTATG+AGG | + | chr3_1:79276311-79276330 | Msa0378460:CDS | 40.0% | |
| AGTTGTTTGCAACAGCTTCA+AGG | - | chr3_1:79276375-79276394 | None:intergenic | 40.0% | |
| TTAACTCTGATCTTCTGCAG+AGG | + | chr3_1:79276491-79276510 | Msa0378460:CDS | 40.0% | |
| ! | TTTGGAGAGTATAACGAAGG+TGG | + | chr3_1:79276642-79276661 | Msa0378460:CDS | 40.0% |
| !! | AGATAATGGAGAGAGGCTAT+TGG | + | chr3_1:79276786-79276805 | Msa0378460:CDS | 40.0% |
| ! | TCTGAGTTGAAAGGCCTATA+CGG | - | chr3_1:79276945-79276964 | None:intergenic | 40.0% |
| ! | TCAGATCGATCTGAGTTGAA+AGG | - | chr3_1:79276954-79276973 | None:intergenic | 40.0% |
| TTCAACTCAGATCGATCTGA+TGG | + | chr3_1:79276954-79276973 | Msa0378460:CDS | 40.0% | |
| GATGGATGATTTCCTCGAAA+TGG | + | chr3_1:79276972-79276991 | Msa0378460:CDS | 40.0% | |
| CTCAAAAATCTGTTCACTGG+AGG | + | chr3_1:79277359-79277378 | Msa0378460:CDS | 40.0% | |
| AGGAAGAGATTGACAAAGAG+CGG | + | chr3_1:79277379-79277398 | Msa0378460:CDS | 40.0% | |
| !! | GTGATACCTTGAGCTGTTTT+TGG | - | chr3_1:79277452-79277471 | None:intergenic | 40.0% |
| ! | AGCTCAAGGTATCACAAAGT+CGG | + | chr3_1:79277457-79277476 | Msa0378460:CDS | 40.0% |
| CTCAAAAATCTGTTCACTGG+AGG | + | chr3_1:79277359-79277378 | Msa0378460:CDS | 40.0% | |
| AGGAAGAGATTGAGAAAGAG+CGG | + | chr3_1:79277661-79277680 | Msa0378460:CDS | 40.0% | |
| ! | GGCTTTGTCTGCTGATAATT+TGG | + | chr3_1:79277683-79277702 | Msa0378460:CDS | 40.0% |
| TTTGGCCAAGTGTGAAAAGT+TGG | + | chr3_1:79277701-79277720 | Msa0378460:CDS | 40.0% | |
| GCAGTATTTCAGTGTCTTGA+TGG | - | chr3_1:79277764-79277783 | None:intergenic | 40.0% | |
| ACTGAAATACTGCATAGGGA+AGG | + | chr3_1:79277771-79277790 | Msa0378460:CDS | 40.0% | |
| ! | GCTGACAATCTCTCTCTTTT+TGG | + | chr3_1:79277893-79277912 | Msa0378460:intron | 40.0% |
| ! | GACAATCTCTCTCTTTTTGG+AGG | + | chr3_1:79277896-79277915 | Msa0378460:intron | 40.0% |
| !! | ATCTCTCTCTTTTTGGAGGA+TGG | + | chr3_1:79277900-79277919 | Msa0378460:intron | 40.0% |
| ! | CTAGAGATTCGATGGTTTTC+CGG | - | chr3_1:79278128-79278147 | None:intergenic | 40.0% |
| GAAGTCTTCCAATGTTGCAA+GGG | - | chr3_1:79278166-79278185 | None:intergenic | 40.0% | |
| TGAAGTCTTCCAATGTTGCA+AGG | - | chr3_1:79278167-79278186 | None:intergenic | 40.0% | |
| ACTTGATTCAGAGGACACTA+TGG | + | chr3_1:79278188-79278207 | Msa0378460:CDS | 40.0% | |
| ! | GGAAAAAGCCACTTCAGTTT+TGG | + | chr3_1:79278321-79278340 | Msa0378460:CDS | 40.0% |
| !! | AAAGCCACTTCAGTTTTGGT+AGG | + | chr3_1:79278325-79278344 | Msa0378460:CDS | 40.0% |
| AGAACCTACCAAAACTGAAG+TGG | - | chr3_1:79278332-79278351 | None:intergenic | 40.0% | |
| TTGGTAGGTTCTATCCTACA+AGG | + | chr3_1:79278340-79278359 | Msa0378460:CDS | 40.0% | |
| TGTTCTGCTTAAGACCTTGT+AGG | - | chr3_1:79278357-79278376 | None:intergenic | 40.0% | |
| TACAAGGTCTTAAGCAGAAC+AGG | + | chr3_1:79278356-79278375 | Msa0378460:exon | 40.0% | |
| ! | ATTTTTCCTTTTTGCCGGGA+AGG | + | chr3_1:79278518-79278537 | Msa0378460:three_prime_UTR | 40.0% |
| GTTTACTCTCGAATTCAGGG+TGG | + | chr3_1:79274593-79274612 | Msa0378460:five_prime_UTR | 45.0% | |
| ATGTGGAGTGAAAGGGATGA+GGG | - | chr3_1:79274671-79274690 | None:intergenic | 45.0% | |
| TATGTGGAGTGAAAGGGATG+AGG | - | chr3_1:79274672-79274691 | None:intergenic | 45.0% | |
| TTGGGGTTATGTGAATTCCC+AGG | + | chr3_1:79275063-79275082 | Msa0378460:intron | 45.0% | |
| TGGGGTTATGTGAATTCCCA+GGG | + | chr3_1:79275064-79275083 | Msa0378460:intron | 45.0% | |
| ATCAGTGTATGTGTCATGCC+TGG | + | chr3_1:79275396-79275415 | Msa0378460:intron | 45.0% | |
| ! | TGTCCGGTGGAGTATTTAAG+TGG | - | chr3_1:79275504-79275523 | None:intergenic | 45.0% |
| CGTCGAGTAGTATGACTATG+AGG | - | chr3_1:79275527-79275546 | None:intergenic | 45.0% | |
| TACTACTCGACGTCAGACTT+AGG | + | chr3_1:79275535-79275554 | Msa0378460:intron | 45.0% | |
| TGGCATATACCTGTACAGCA+CGG | - | chr3_1:79275785-79275804 | None:intergenic | 45.0% | |
| TGGAGATGGAACAGTTTGAG+TGG | - | chr3_1:79275805-79275824 | None:intergenic | 45.0% | |
| ! | TCGGAAATGACTTCTGGAGA+TGG | - | chr3_1:79275819-79275838 | None:intergenic | 45.0% |
| ATCTCCAGAAGTCATTTCCG+AGG | + | chr3_1:79275818-79275837 | Msa0378460:CDS | 45.0% | |
| ACTAATGTCTAAGAGAGCGG+CGG | - | chr3_1:79275898-79275917 | None:intergenic | 45.0% | |
| GGCACTAATGTCTAAGAGAG+CGG | - | chr3_1:79275901-79275920 | None:intergenic | 45.0% | |
| GACAGCTTCTTCAGCAACTT+TGG | - | chr3_1:79275949-79275968 | None:intergenic | 45.0% | |
| TTTATCCAGTGAGAAAGCCG+AGG | + | chr3_1:79276022-79276041 | Msa0378460:intron | 45.0% | |
| AAAGGTCGATACCAATGCCT+CGG | - | chr3_1:79276042-79276061 | None:intergenic | 45.0% | |
| TGCTGCAAAACAGCAGAATG+CGG | + | chr3_1:79276258-79276277 | Msa0378460:CDS | 45.0% | |
| GTGGAAAGTTACTGAGCTTG+AGG | + | chr3_1:79276429-79276448 | Msa0378460:CDS | 45.0% | |
| ! | TGAACTACAATCTCGACTCG+AGG | + | chr3_1:79276552-79276571 | Msa0378460:CDS | 45.0% |
| GGTGCTCAAATCCCATTCAA+TGG | - | chr3_1:79276593-79276612 | None:intergenic | 45.0% | |
| GCTTTCTCTTTCTGCAGCTT+GGG | - | chr3_1:79276614-79276633 | None:intergenic | 45.0% | |
| TGCTTTCTCTTTCTGCAGCT+TGG | - | chr3_1:79276615-79276634 | None:intergenic | 45.0% | |
| !! | GCATGTCAGATAATGGAGAG+AGG | + | chr3_1:79276779-79276798 | Msa0378460:CDS | 45.0% |
| TAATGGAGAGAGGCTATTGG+TGG | + | chr3_1:79276789-79276808 | Msa0378460:CDS | 45.0% | |
| AGTGATATGCGCAAATTCGG+AGG | + | chr3_1:79276817-79276836 | Msa0378460:CDS | 45.0% | |
| GGCCATGAGTCATAATGCTT+TGG | - | chr3_1:79276865-79276884 | None:intergenic | 45.0% | |
| ACCACTGCACAAAACCGTAT+AGG | + | chr3_1:79276928-79276947 | Msa0378460:CDS | 45.0% | |
| GCATCAGACCAACCAAATGT+TGG | + | chr3_1:79277021-79277040 | Msa0378460:CDS | 45.0% | |
| AGACACAGTGTATGCTGAAG+TGG | + | chr3_1:79277053-79277072 | Msa0378460:CDS | 45.0% | |
| ! | GTATGCTGAAGTGGAAGCAT+TGG | + | chr3_1:79277062-79277081 | Msa0378460:CDS | 45.0% |
| GGAGAAGAAGCTAGCGAAAA+TGG | + | chr3_1:79277104-79277123 | Msa0378460:CDS | 45.0% | |
| GAAGAAGCTAGCGAAAATGG+AGG | + | chr3_1:79277107-79277126 | Msa0378460:CDS | 45.0% | |
| !! | GTAATACCTCGAGCTGCTTT+TGG | - | chr3_1:79277170-79277189 | None:intergenic | 45.0% |
| ! | AAGCAGCTCGAGGTATTACA+AGG | + | chr3_1:79277171-79277190 | Msa0378460:CDS | 45.0% |
| GGAAGAGATTGACAAAGAGC+GGG | + | chr3_1:79277380-79277399 | Msa0378460:CDS | 45.0% | |
| TGCAGATAAACTCGAGCTAG+AGG | + | chr3_1:79277410-79277429 | Msa0378460:CDS | 45.0% | |
| AGATAAACTCGAGCTAGAGG+TGG | + | chr3_1:79277413-79277432 | Msa0378460:CDS | 45.0% | |
| ! | GCTCAAGGTATCACAAAGTC+GGG | + | chr3_1:79277458-79277477 | Msa0378460:CDS | 45.0% |
| GGTATCACAAAGTCGGGTAA+AGG | + | chr3_1:79277464-79277483 | Msa0378460:CDS | 45.0% | |
| ACAAAGTCGGGTAAAGGAAG+CGG | + | chr3_1:79277470-79277489 | Msa0378460:CDS | 45.0% | |
| GGAAGAGATTGAGAAAGAGC+GGG | + | chr3_1:79277662-79277681 | Msa0378460:CDS | 45.0% | |
| TGGCGAGTTAATGTTCAAGC+AGG | + | chr3_1:79277800-79277819 | Msa0378460:CDS | 45.0% | |
| GCATCATTTGATGCAGGAGA+AGG | + | chr3_1:79278068-79278087 | Msa0378460:intron | 45.0% | |
| ! | CTAGTAGATTTTCCGAGTGC+CGG | + | chr3_1:79278106-79278125 | Msa0378460:CDS | 45.0% |
| CGGAAAACCATCGAATCTCT+AGG | + | chr3_1:79278126-79278145 | Msa0378460:CDS | 45.0% | |
| GTTGAAGTCCCTTGCAACAT+TGG | + | chr3_1:79278155-79278174 | Msa0378460:CDS | 45.0% | |
| GCATGATTCAAACTCCTTCC+CGG | - | chr3_1:79278535-79278554 | None:intergenic | 45.0% | |
| !! | ATTAATATTTGATTATATTT+AGG | + | chr3_1:79276187-79276206 | Msa0378460:intron | 5.0% |
| TAGGAGGTAGGGACCATTTG+TGG | - | chr3_1:79274501-79274520 | None:intergenic | 50.0% | |
| TACTCTCGAATTCAGGGTGG+AGG | + | chr3_1:79274596-79274615 | Msa0378460:five_prime_UTR | 50.0% | |
| TGGAACGAAGGAGTTGGATG+TGG | + | chr3_1:79274857-79274876 | Msa0378460:CDS | 50.0% | |
| GAACAGCTAGCTACCTACCT+AGG | - | chr3_1:79275036-79275055 | None:intergenic | 50.0% | |
| ! | TTGAAGGCGTGTCTGATGTC+TGG | + | chr3_1:79275305-79275324 | Msa0378460:intron | 50.0% |
| !! | ATCACATGTGTCGGTGCTGT+AGG | - | chr3_1:79275344-79275363 | None:intergenic | 50.0% |
| GCTATGAAGCACAAACACGG+AGG | - | chr3_1:79275422-79275441 | None:intergenic | 50.0% | |
| ! | TATGACTATGAGGTGTCCGG+TGG | - | chr3_1:79275517-79275536 | None:intergenic | 50.0% |
| ATGCTTTCTCCGTGCTGTAC+AGG | + | chr3_1:79275773-79275792 | Msa0378460:intron | 50.0% | |
| CTCTTCATTTGACGCAGCCT+CGG | - | chr3_1:79275838-79275857 | None:intergenic | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | + | chr3_1:79275951-79275970 | Msa0378460:CDS | 50.0% | |
| ! | CCACTCAAGCTCGTCTCTTT+TGG | - | chr3_1:79276413-79276432 | None:intergenic | 50.0% |
| CCAAAAGAGACGAGCTTGAG+TGG | + | chr3_1:79276410-79276429 | Msa0378460:CDS | 50.0% | |
| TGATCTTCTGCAGAGGCTTC+AGG | + | chr3_1:79276498-79276517 | Msa0378460:CDS | 50.0% | |
| GTGCCAGAGATTGAATGTCG+TGG | + | chr3_1:79276681-79276700 | Msa0378460:CDS | 50.0% | |
| GAGCCACGACATTCAATCTC+TGG | - | chr3_1:79276687-79276706 | None:intergenic | 50.0% | |
| CATTCTCTGTCAACGATCGC+AGG | + | chr3_1:79276713-79276732 | Msa0378460:CDS | 50.0% | |
| ATATGCGCAAATTCGGAGGC+AGG | + | chr3_1:79276821-79276840 | Msa0378460:CDS | 50.0% | |
| TATGCGCAAATTCGGAGGCA+GGG | + | chr3_1:79276822-79276841 | Msa0378460:CDS | 50.0% | |
| GGAGGCAGGGAGATAAATGA+AGG | + | chr3_1:79276835-79276854 | Msa0378460:CDS | 50.0% | |
| !! | GCCTATACGGTTTTGTGCAG+TGG | - | chr3_1:79276932-79276951 | None:intergenic | 50.0% |
| CAGCAAGCCTTTCCATTTCG+AGG | - | chr3_1:79276987-79277006 | None:intergenic | 50.0% | |
| !! | GGTTGGTCTGATGCAGTATC+TGG | - | chr3_1:79277015-79277034 | None:intergenic | 50.0% |
| AGACCAACCAAATGTTGGCC+AGG | + | chr3_1:79277026-79277045 | Msa0378460:CDS | 50.0% | |
| GACCAACCAAATGTTGGCCA+GGG | + | chr3_1:79277027-79277046 | Msa0378460:CDS | 50.0% | |
| TTCCCTGGCCAACATTTGGT+TGG | - | chr3_1:79277032-79277051 | None:intergenic | 50.0% | |
| TCTGTTCCCTGGCCAACATT+TGG | - | chr3_1:79277036-79277055 | None:intergenic | 50.0% | |
| CATACACTGTGTCTGTTCCC+TGG | - | chr3_1:79277047-79277066 | None:intergenic | 50.0% | |
| ! | AGCTCGAGGTATTACAAGGC+CGG | + | chr3_1:79277175-79277194 | Msa0378460:CDS | 50.0% |
| GGTATTACAAGGCCGGGTAA+AGG | + | chr3_1:79277182-79277201 | Msa0378460:CDS | 50.0% | |
| CCAACTCTGCTTCCTTTACC+CGG | - | chr3_1:79277197-79277216 | None:intergenic | 50.0% | |
| GGTAAAGGAAGCAGAGTTGG+AGG | + | chr3_1:79277197-79277216 | Msa0378460:CDS | 50.0% | |
| ACTGAGAGCTGCTCAAACTG+AGG | + | chr3_1:79277323-79277342 | Msa0378460:CDS | 50.0% | |
| CGAGTGCCAAAAACAGCTCA+AGG | + | chr3_1:79277443-79277462 | Msa0378460:CDS | 50.0% | |
| ACTGAGAGCTGCTCAAACTG+AGG | + | chr3_1:79277323-79277342 | Msa0378460:CDS | 50.0% | |
| !! | CTGCATAGGGAAGGTGTTGA+TGG | + | chr3_1:79277780-79277799 | Msa0378460:CDS | 50.0% |
| GCAGGAGAAGGAACTAGCAT+TGG | + | chr3_1:79278080-79278099 | Msa0378460:intron | 50.0% | |
| ! | TTCGATGGTTTTCCGGCACT+CGG | - | chr3_1:79278121-79278140 | None:intergenic | 50.0% |
| CTGCTGTCCTAGAGATTCGA+TGG | - | chr3_1:79278136-79278155 | None:intergenic | 50.0% | |
| AACTGCTCATCGCCATCTTG+GGG | - | chr3_1:79278243-79278262 | None:intergenic | 50.0% | |
| CAACTGCTCATCGCCATCTT+GGG | - | chr3_1:79278244-79278263 | None:intergenic | 50.0% | |
| TCAACTGCTCATCGCCATCT+TGG | - | chr3_1:79278245-79278264 | None:intergenic | 50.0% | |
| CAAACTCCTTCCCGGCAAAA+AGG | - | chr3_1:79278527-79278546 | None:intergenic | 50.0% | |
| ! | TCAGGGTGGAGGCGTGAAAT+TGG | + | chr3_1:79274607-79274626 | Msa0378460:five_prime_UTR | 55.0% |
| ! | CAGGGTGGAGGCGTGAAATT+GGG | + | chr3_1:79274608-79274627 | Msa0378460:five_prime_UTR | 55.0% |
| ! | AGGGTGGAGGCGTGAAATTG+GGG | + | chr3_1:79274609-79274628 | Msa0378460:five_prime_UTR | 55.0% |
| ATACAGGAAGGAGGGGTCCT+AGG | + | chr3_1:79275016-79275035 | Msa0378460:intron | 55.0% | |
| GCAGCCTCGGAAATGACTTC+TGG | - | chr3_1:79275825-79275844 | None:intergenic | 55.0% | |
| CGAGGCTGCGTCAAATGAAG+AGG | + | chr3_1:79275836-79275855 | Msa0378460:CDS | 55.0% | |
| CAATGCCTCGGCTTTCTCAC+TGG | - | chr3_1:79276030-79276049 | None:intergenic | 55.0% | |
| CAGTGAGAAAGCCGAGGCAT+TGG | + | chr3_1:79276028-79276047 | Msa0378460:intron | 55.0% | |
| TCTGCAGAGGCTTCAGGATG+TGG | + | chr3_1:79276504-79276523 | Msa0378460:CDS | 55.0% | |
| AGAGGCTTCAGGATGTGGAG+AGG | + | chr3_1:79276509-79276528 | Msa0378460:CDS | 55.0% | |
| GAGGCTTCAGGATGTGGAGA+GGG | + | chr3_1:79276510-79276529 | Msa0378460:CDS | 55.0% | |
| ! | GCTCGAGGTATTACAAGGCC+GGG | + | chr3_1:79277176-79277195 | Msa0378460:CDS | 55.0% |
| CCGGGTAAAGGAAGCAGAGT+TGG | + | chr3_1:79277194-79277213 | Msa0378460:CDS | 55.0% | |
| GAGAGCTGCTCAAACTGAGG+CGG | + | chr3_1:79277326-79277345 | Msa0378460:CDS | 55.0% | |
| TCGGGTAAAGGAAGCGGAGT+TGG | + | chr3_1:79277476-79277495 | Msa0378460:CDS | 55.0% | |
| GGTAAAGGAAGCGGAGTTGG+AGG | + | chr3_1:79277479-79277498 | Msa0378460:CDS | 55.0% | |
| ACAAACCCAGCTCCCCAAGA+TGG | + | chr3_1:79278228-79278247 | Msa0378460:CDS | 55.0% | |
| AGGAAGGAGGGGTCCTAGGT+AGG | + | chr3_1:79275020-79275039 | Msa0378460:intron | 60.0% | |
| GAAGCACAAACACGGAGGCC+AGG | - | chr3_1:79275417-79275436 | None:intergenic | 60.0% | |
| CGAGTGCCAAAAGCAGCTCG+AGG | + | chr3_1:79277161-79277180 | Msa0378460:CDS | 60.0% | |
| CATCGCCATCTTGGGGAGCT+GGG | - | chr3_1:79278236-79278255 | None:intergenic | 60.0% | |
| TCATCGCCATCTTGGGGAGC+TGG | - | chr3_1:79278237-79278256 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79274491 | 79278657 | 79274491 | ID=Msa0378460;Name=Msa0378460 |
| chr3_1 | mRNA | 79274491 | 79278657 | 79274491 | ID=Msa0378460-mRNA-1;Parent=Msa0378460;Name=Msa0378460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=190|1|1|1|0.6|0.66|6|289|730 |
| chr3_1 | exon | 79274491 | 79274563 | 79274491 | ID=Msa0378460-mRNA-1:exon:19344;Parent=Msa0378460-mRNA-1 |
| chr3_1 | exon | 79274586 | 79274702 | 79274586 | ID=Msa0378460-mRNA-1:exon:19345;Parent=Msa0378460-mRNA-1 |
| chr3_1 | exon | 79274856 | 79274972 | 79274856 | ID=Msa0378460-mRNA-1:exon:19346;Parent=Msa0378460-mRNA-1 |
| chr3_1 | exon | 79275795 | 79275972 | 79275795 | ID=Msa0378460-mRNA-1:exon:19347;Parent=Msa0378460-mRNA-1 |
| chr3_1 | exon | 79276209 | 79277821 | 79276209 | ID=Msa0378460-mRNA-1:exon:19348;Parent=Msa0378460-mRNA-1 |
| chr3_1 | exon | 79278084 | 79278657 | 79278084 | ID=Msa0378460-mRNA-1:exon:19349;Parent=Msa0378460-mRNA-1 |
| chr3_1 | five_prime_UTR | 79274491 | 79274563 | 79274491 | ID=Msa0378460-mRNA-1:five_prime_utr;Parent=Msa0378460-mRNA-1 |
| chr3_1 | five_prime_UTR | 79274586 | 79274702 | 79274586 | ID=Msa0378460-mRNA-1:five_prime_utr;Parent=Msa0378460-mRNA-1 |
| chr3_1 | CDS | 79274856 | 79274972 | 79274856 | ID=Msa0378460-mRNA-1:cds;Parent=Msa0378460-mRNA-1 |
| chr3_1 | CDS | 79275795 | 79275972 | 79275795 | ID=Msa0378460-mRNA-1:cds;Parent=Msa0378460-mRNA-1 |
| chr3_1 | CDS | 79276209 | 79277821 | 79276209 | ID=Msa0378460-mRNA-1:cds;Parent=Msa0378460-mRNA-1 |
| chr3_1 | CDS | 79278084 | 79278368 | 79278084 | ID=Msa0378460-mRNA-1:cds;Parent=Msa0378460-mRNA-1 |
| chr3_1 | three_prime_UTR | 79278369 | 79278657 | 79278369 | ID=Msa0378460-mRNA-1:three_prime_utr;Parent=Msa0378460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
