Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378740 | XP_024635981.1 | 97.196 | 535 | 13 | 1 | 1 | 535 | 1 | 533 | 0.0 | 1072 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378740 | sp|P0ABF1|PCNB_ECOLI | 36.364 | 264 | 158 | 2 | 63 | 319 | 27 | 287 | 6.91e-42 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378740 | A0A396J139 | 97.196 | 535 | 13 | 1 | 1 | 535 | 1 | 533 | 0.0 | 1072 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0378740 | Msa0474750 | 0.862410 | 5.169644e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378740 | MtrunA17_Chr3g0131751 | 97.196 | 535 | 13 | 1 | 1 | 535 | 1 | 533 | 0.0 | 1072 |
| Msa0378740 | MtrunA17_Chr8g0385901 | 67.939 | 524 | 157 | 3 | 1 | 522 | 1 | 515 | 0.0 | 739 |
| Msa0378740 | MtrunA17_Chr5g0406751 | 39.009 | 464 | 264 | 9 | 65 | 515 | 59 | 516 | 1.71e-97 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378740 | AT5G23690.1 | 61.134 | 494 | 185 | 4 | 37 | 523 | 33 | 526 | 0.0 | 613 |
| Msa0378740 | AT3G48830.1 | 62.446 | 466 | 174 | 1 | 59 | 523 | 53 | 518 | 0.0 | 607 |
| Msa0378740 | AT1G28090.3 | 55.106 | 470 | 204 | 4 | 55 | 518 | 9 | 477 | 0.0 | 522 |
| Msa0378740 | AT1G28090.1 | 55.106 | 470 | 204 | 4 | 55 | 518 | 72 | 540 | 0.0 | 521 |
| Msa0378740 | AT1G28090.2 | 55.106 | 470 | 204 | 4 | 55 | 518 | 36 | 504 | 0.0 | 521 |
| Msa0378740 | AT1G28090.4 | 52.340 | 470 | 197 | 5 | 55 | 518 | 36 | 484 | 2.23e-166 | 481 |
| Msa0378740 | AT1G28090.5 | 62.950 | 278 | 101 | 2 | 55 | 331 | 72 | 348 | 5.46e-124 | 368 |
| Msa0378740 | AT2G17580.1 | 41.949 | 472 | 248 | 7 | 65 | 515 | 59 | 525 | 7.34e-110 | 344 |
Find 182 sgRNAs with CRISPR-Local
Find 453 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCGGGACTTTACAATTAA+TGG | 0.130521 | 3_1:-79577961 | Msa0378740:CDS |
| AGCCAAAAGCTTATCTAAAT+TGG | 0.169200 | 3_1:+79576413 | None:intergenic |
| AAACATTCGGTCTTCAGTTT+TGG | 0.198207 | 3_1:-79574021 | Msa0378740:three_prime_UTR |
| TTGCGGTTATTATGGAAATT+TGG | 0.215118 | 3_1:-79577241 | Msa0378740:CDS |
| TCCTGCAGATATTTCATTTC+GGG | 0.215372 | 3_1:-79577653 | Msa0378740:CDS |
| TACTTCCCCGGTGCCACTTT+TGG | 0.235909 | 3_1:+79573816 | None:intergenic |
| AAGCTTCTTTGCGGTTATTA+TGG | 0.238802 | 3_1:-79577249 | Msa0378740:CDS |
| GCTGCCCGGAAGGTTCTAAA+TGG | 0.244509 | 3_1:-79580073 | Msa0378740:CDS |
| CCAACAAATTCCCACCATTA+TGG | 0.275648 | 3_1:+79575304 | None:intergenic |
| ATGAATTATATGCTAGCTTA+TGG | 0.279586 | 3_1:-79577280 | Msa0378740:CDS |
| CCTGAATTGTTAGATCCTTC+TGG | 0.298363 | 3_1:-79575231 | Msa0378740:CDS |
| TAATCTTTGAGAGATTAATT+TGG | 0.300495 | 3_1:-79573861 | Msa0378740:three_prime_UTR |
| CTTAGGATTTAGTATATCTA+AGG | 0.307307 | 3_1:-79577463 | Msa0378740:CDS |
| GTCTTTACGTACAATTCTAA+TGG | 0.317581 | 3_1:+79574536 | None:intergenic |
| CAAAAGGACCAATATGCTTT+TGG | 0.320964 | 3_1:-79577080 | Msa0378740:intron |
| CTCCAATTTAGATAAGCTTT+TGG | 0.326776 | 3_1:-79576415 | Msa0378740:CDS |
| AGGTCCTTCTCACAACTATT+AGG | 0.332171 | 3_1:+79578006 | None:intergenic |
| GCTAGCTAGCGCATAGGGTT+CGG | 0.344748 | 3_1:+79580605 | None:intergenic |
| ATTGTGAATTCCAAGCTCTT+TGG | 0.345189 | 3_1:+79580111 | None:intergenic |
| ACCACTTACCAAAAGCATAT+TGG | 0.349998 | 3_1:+79577072 | None:intergenic |
| ATCCTGCAGATATTTCATTT+CGG | 0.351685 | 3_1:-79577654 | Msa0378740:CDS |
| CAACTCTGAGAGGTACTTAC+AGG | 0.351889 | 3_1:-79574196 | Msa0378740:three_prime_UTR |
| CTAGCTAGCGCATAGGGTTC+GGG | 0.353183 | 3_1:+79580606 | None:intergenic |
| CCAGAAGGATCTAACAATTC+AGG | 0.353886 | 3_1:+79575231 | None:intergenic |
| TCAGGAAATCTCATATCATT+TGG | 0.354488 | 3_1:+79575249 | None:intergenic |
| GCTCCAAACCGTCCATGTTA+TGG | 0.355718 | 3_1:-79576393 | Msa0378740:CDS |
| TATATGCTAGCTTATGGTTC+TGG | 0.357671 | 3_1:-79577274 | Msa0378740:CDS |
| AGGCATTGGAAGCTGGGGTT+AGG | 0.357700 | 3_1:-79575197 | Msa0378740:CDS |
| ACCGGGACTTTACAATTAAT+GGG | 0.362333 | 3_1:-79577960 | Msa0378740:intron |
| AGATATACTTCTTCCCTTCC+AGG | 0.367335 | 3_1:-79577212 | Msa0378740:intron |
| GTCCATGTTATGGCAGCTTA+TGG | 0.367771 | 3_1:-79576383 | Msa0378740:intron |
| TGAGCCCATTTAGAACCTTC+CGG | 0.369841 | 3_1:+79580068 | None:intergenic |
| TTCAGTATTAAGACTTGATA+AGG | 0.370310 | 3_1:-79577409 | Msa0378740:intron |
| TCATATACAACTCTTTCATA+TGG | 0.376207 | 3_1:+79577818 | None:intergenic |
| GAGCCCATTTAGAACCTTCC+GGG | 0.384290 | 3_1:+79580069 | None:intergenic |
| TTTGGACGGAGTAATTAGTA+TGG | 0.384848 | 3_1:+79573834 | None:intergenic |
| CTGCCATAACATGGACGGTT+TGG | 0.385526 | 3_1:+79576390 | None:intergenic |
| GTCTGATCATAATCAGATAT+TGG | 0.393261 | 3_1:-79574234 | Msa0378740:three_prime_UTR |
| TTCTAAATGGGCTCAAGAAA+AGG | 0.396116 | 3_1:-79580060 | Msa0378740:CDS |
| ATCCATGTGAACATGGCATA+TGG | 0.398011 | 3_1:+79578251 | None:intergenic |
| TTTAGCCTTGCAGTCCATAA+TGG | 0.400501 | 3_1:-79575318 | Msa0378740:CDS |
| ATGAAATAATCATTCTATCA+AGG | 0.404734 | 3_1:-79574263 | Msa0378740:three_prime_UTR |
| TTTCCTGGTGTAAGATAGTT+GGG | 0.406015 | 3_1:-79578284 | Msa0378740:CDS |
| AAAGAGCAGCTCGGTTTCAC+TGG | 0.407209 | 3_1:-79574336 | Msa0378740:CDS |
| TTGGTACCTTACGAAGATAT+TGG | 0.411502 | 3_1:+79580473 | None:intergenic |
| TTAATGCCTGATCCTGATCT+TGG | 0.411881 | 3_1:+79574357 | None:intergenic |
| TTGATTTCCATGACGGTCAC+TGG | 0.416859 | 3_1:-79580544 | Msa0378740:exon |
| GATTATGAGTCCTTAGCTAA+TGG | 0.417511 | 3_1:-79574443 | Msa0378740:CDS |
| AACAATTCTTCCACCGAAGA+AGG | 0.417639 | 3_1:+79577986 | None:intergenic |
| ATTAGAATTGCTGCTCGCTT+AGG | 0.418243 | 3_1:-79577480 | Msa0378740:CDS |
| TCACTGGGAGGCTAGTTTGA+AGG | 0.425989 | 3_1:-79574320 | Msa0378740:exon |
| GGAATTCACAATTCGTCCAT+TGG | 0.428677 | 3_1:-79580100 | Msa0378740:CDS |
| CGTCCATTGGACCCGCTGCC+CGG | 0.430040 | 3_1:-79580087 | Msa0378740:CDS |
| GTACCTATCTTCTTCCATGC+AGG | 0.430046 | 3_1:+79580133 | None:intergenic |
| GGCATTGGAAGCTGGGGTTA+GGG | 0.430693 | 3_1:-79575196 | Msa0378740:CDS |
| CCATAATGGTGGGAATTTGT+TGG | 0.434014 | 3_1:-79575304 | Msa0378740:CDS |
| AATGCAAAGGCATTGGAAGC+TGG | 0.434153 | 3_1:-79575204 | Msa0378740:CDS |
| GATCTTGCAGAGTCTATTAG+AGG | 0.435267 | 3_1:-79575174 | Msa0378740:CDS |
| GGTGGAAGAATTGTTTAAAC+CGG | 0.436234 | 3_1:-79577978 | Msa0378740:CDS |
| TCTAAATGGGCTCAAGAAAA+GGG | 0.442755 | 3_1:-79580059 | Msa0378740:CDS |
| AAAGTGACCCCATCCCAAAA+AGG | 0.443322 | 3_1:-79574048 | Msa0378740:three_prime_UTR |
| TCCCCTGCATGGAAGAAGAT+AGG | 0.460559 | 3_1:-79580136 | Msa0378740:CDS |
| GTTATAATATCAAAGTCCTT+TGG | 0.463687 | 3_1:+79578543 | None:intergenic |
| GGATATGATGTATACCTTGT+AGG | 0.465194 | 3_1:-79578600 | Msa0378740:CDS |
| CATTGGACCCGCTGCCCGGA+AGG | 0.465838 | 3_1:-79580083 | Msa0378740:CDS |
| ACGAAGATATTGGAAGGGAG+TGG | 0.468199 | 3_1:+79580483 | None:intergenic |
| AATTCTGTAAATGATTGATA+TGG | 0.470430 | 3_1:-79573892 | Msa0378740:three_prime_UTR |
| ATTTAGAACCTTCCGGGCAG+CGG | 0.471795 | 3_1:+79580075 | None:intergenic |
| TTTAGAACCTTCCGGGCAGC+GGG | 0.474847 | 3_1:+79580076 | None:intergenic |
| ACCCATTAATTGTAAAGTCC+CGG | 0.476275 | 3_1:+79577959 | None:intergenic |
| TTGGAAGCAGTGAACATAGC+AGG | 0.476311 | 3_1:-79575285 | Msa0378740:CDS |
| TGTCCCTCCTTCGAAATCCA+TGG | 0.478188 | 3_1:+79577101 | None:intergenic |
| TCCATGTGAACATGGCATAT+GGG | 0.478630 | 3_1:+79578252 | None:intergenic |
| ATGCAAAGGCATTGGAAGCT+GGG | 0.478735 | 3_1:-79575203 | Msa0378740:CDS |
| GGCTAAATGCAGCAACCACC+AGG | 0.479197 | 3_1:+79575334 | None:intergenic |
| TACCTATCTTCTTCCATGCA+GGG | 0.484519 | 3_1:+79580134 | None:intergenic |
| AACTTCAGCTGAGCTAAAAG+AGG | 0.485480 | 3_1:-79578523 | Msa0378740:intron |
| AAGATAGGTACCAAAGAGCT+TGG | 0.492787 | 3_1:-79580121 | Msa0378740:CDS |
| GCATATAATTCATTTCCATC+AGG | 0.496162 | 3_1:+79577290 | None:intergenic |
| TCTTTGAGAGATTAATTTGG+CGG | 0.497381 | 3_1:-79573858 | Msa0378740:three_prime_UTR |
| CTGCCCGGAAGGTTCTAAAT+GGG | 0.497838 | 3_1:-79580072 | Msa0378740:CDS |
| GATTTCGAAGGAGGGACAAA+AGG | 0.500873 | 3_1:-79577096 | Msa0378740:CDS |
| CTAATTACTCCGTCCAAAAG+TGG | 0.503410 | 3_1:-79573829 | Msa0378740:three_prime_UTR |
| CTCACCATGGATTTCGAAGG+AGG | 0.506537 | 3_1:-79577105 | Msa0378740:CDS |
| GTTCTGGTGAAGCTTCTTTG+CGG | 0.510348 | 3_1:-79577258 | Msa0378740:CDS |
| GGAAGGGTACTACTCTGCTC+TGG | 0.510859 | 3_1:-79574142 | Msa0378740:three_prime_UTR |
| TGAAATAATCATTCTATCAA+GGG | 0.511197 | 3_1:-79574262 | Msa0378740:three_prime_UTR |
| ACCTATCTTCTTCCATGCAG+GGG | 0.511636 | 3_1:+79580135 | None:intergenic |
| CTACTCTGCTCTGGCATCCA+AGG | 0.511965 | 3_1:-79574133 | Msa0378740:three_prime_UTR |
| CTTCCGGGCAGCGGGTCCAA+TGG | 0.512342 | 3_1:+79580084 | None:intergenic |
| GTTGTGAGAAGGACCTTCTT+CGG | 0.513047 | 3_1:-79577999 | Msa0378740:CDS |
| ACCCTATGCGCTAGCTAGCT+CGG | 0.514241 | 3_1:-79580601 | Msa0378740:five_prime_UTR |
| ACCTTGTAGGAGGTTGTGTA+CGG | 0.515753 | 3_1:-79578587 | Msa0378740:CDS |
| TCCCGAAATGAAATATCTGC+AGG | 0.516995 | 3_1:+79577652 | None:intergenic |
| CCCCATATGCCATGTTCACA+TGG | 0.518226 | 3_1:-79578253 | Msa0378740:CDS |
| GCAACCACCAGGGGATCCCT+TGG | 0.518539 | 3_1:+79575345 | None:intergenic |
| TCAATGCTTTATGCAATGCT+AGG | 0.520605 | 3_1:+79575376 | None:intergenic |
| AAGAGTTGTATATGATTACA+TGG | 0.523526 | 3_1:-79577810 | Msa0378740:CDS |
| TTGTATATCACCATTAGCTA+AGG | 0.524570 | 3_1:+79574433 | None:intergenic |
| CATATACAACTCTTTCATAT+GGG | 0.524973 | 3_1:+79577819 | None:intergenic |
| AGTGGGACGAAGATGAAGAG+TGG | 0.532758 | 3_1:+79580501 | None:intergenic |
| TGATCGACCAAGGGATCCCC+TGG | 0.532953 | 3_1:-79575352 | Msa0378740:CDS |
| GGCGTCTCAATTCGTGAAGA+AGG | 0.534341 | 3_1:-79580308 | Msa0378740:intron |
| GAAAATAGTAGCGGTGGCTG+TGG | 0.536926 | 3_1:-79580329 | Msa0378740:CDS |
| TAACACTGCTAGAGGCAAGA+AGG | 0.536969 | 3_1:-79578058 | Msa0378740:CDS |
| TGCTAGAGGCAAGAAGGGTG+TGG | 0.537319 | 3_1:-79578052 | Msa0378740:CDS |
| GTTCCCACTTCACCAAGATC+AGG | 0.539186 | 3_1:-79574369 | Msa0378740:CDS |
| CCCGTACACAACCTCCTACA+AGG | 0.541241 | 3_1:+79578586 | None:intergenic |
| CCATGTGAACATGGCATATG+GGG | 0.543366 | 3_1:+79578253 | None:intergenic |
| TACCATAAGCTGCCATAACA+TGG | 0.543963 | 3_1:+79576381 | None:intergenic |
| ACCGAGCTAGCTAGCGCATA+GGG | 0.544096 | 3_1:+79580600 | None:intergenic |
| AAGAGCAGCTCGGTTTCACT+GGG | 0.548338 | 3_1:-79574335 | Msa0378740:CDS |
| TGCTCACTAGGTCAGAATGA+GGG | 0.549059 | 3_1:+79575088 | None:intergenic |
| TGGTATGAATGCAAAGGCAT+TGG | 0.552008 | 3_1:-79575211 | Msa0378740:CDS |
| ACTTCACCAAGATCAGGATC+AGG | 0.556391 | 3_1:-79574363 | Msa0378740:CDS |
| AACACTGCTAGAGGCAAGAA+GGG | 0.556413 | 3_1:-79578057 | Msa0378740:CDS |
| TGATCCTGATCTTGGTGAAG+TGG | 0.556453 | 3_1:+79574365 | None:intergenic |
| TCCCTTCCAATATCTTCGTA+AGG | 0.557251 | 3_1:-79580479 | Msa0378740:intron |
| GCCTTTGCATTCATACCAGA+AGG | 0.560801 | 3_1:+79575216 | None:intergenic |
| GCCTTGCAGTCCATAATGGT+GGG | 0.560897 | 3_1:-79575314 | Msa0378740:CDS |
| TGTGAGTGAGTTAAATGCCT+TGG | 0.563724 | 3_1:+79574116 | None:intergenic |
| AGGTCAGAATGAGGGGCTTG+AGG | 0.565018 | 3_1:+79575096 | None:intergenic |
| ATTTCATTTCGGGAAGATTG+TGG | 0.567097 | 3_1:-79577643 | Msa0378740:intron |
| AAAATTAACATATACCTGGA+AGG | 0.570613 | 3_1:+79577198 | None:intergenic |
| TGGTATCATCCATGTGAACA+TGG | 0.572381 | 3_1:+79578244 | None:intergenic |
| GTGGAAGAATTGTTTAAACC+GGG | 0.573283 | 3_1:-79577977 | Msa0378740:CDS |
| CTGTAAGTACCTCTCAGAGT+TGG | 0.573745 | 3_1:+79574197 | None:intergenic |
| CCTTGTAGGAGGTTGTGTAC+GGG | 0.574482 | 3_1:-79578586 | Msa0378740:CDS |
| ATGCTCACTAGGTCAGAATG+AGG | 0.575466 | 3_1:+79575087 | None:intergenic |
| TACCTTACGAAGATATTGGA+AGG | 0.580587 | 3_1:+79580477 | None:intergenic |
| AGCCTTGCAGTCCATAATGG+TGG | 0.580771 | 3_1:-79575315 | Msa0378740:CDS |
| TTGCTCACCATGGATTTCGA+AGG | 0.581317 | 3_1:-79577108 | Msa0378740:CDS |
| CAACTCTTTCATATGGGTCA+AGG | 0.582351 | 3_1:+79577825 | None:intergenic |
| TCCCACCATTATGGACTGCA+AGG | 0.582464 | 3_1:+79575313 | None:intergenic |
| CGAAGATATTGGAAGGGAGT+GGG | 0.585271 | 3_1:+79580484 | None:intergenic |
| GACGAAGATGAAGAGTGGAT+TGG | 0.585564 | 3_1:+79580506 | None:intergenic |
| GATCCTGATCTTGGTGAAGT+GGG | 0.585678 | 3_1:+79574366 | None:intergenic |
| ATGAGGGGCTTGAGGATAGT+CGG | 0.587201 | 3_1:+79575104 | None:intergenic |
| TCTGTAAATGATTGATATGG+TGG | 0.590744 | 3_1:-79573889 | Msa0378740:three_prime_UTR |
| GTTGTATATGATTACATGGG+AGG | 0.594473 | 3_1:-79577806 | Msa0378740:CDS |
| AAATTAACATATACCTGGAA+GGG | 0.595461 | 3_1:+79577199 | None:intergenic |
| CATAGGGTTCGGGGTAAGAG+AGG | 0.596696 | 3_1:+79580616 | None:intergenic |
| TGCAAAGGCATTGGAAGCTG+GGG | 0.601578 | 3_1:-79575202 | Msa0378740:CDS |
| CACCGAGCTAGCTAGCGCAT+AGG | 0.604138 | 3_1:+79580599 | None:intergenic |
| TCCTTCTGGTATGAATGCAA+AGG | 0.604970 | 3_1:-79575217 | Msa0378740:CDS |
| ATTTAGTATATCTAAGGAGA+CGG | 0.606375 | 3_1:-79577457 | Msa0378740:CDS |
| GCTCACTAGGTCAGAATGAG+GGG | 0.607163 | 3_1:+79575089 | None:intergenic |
| GAAATGAGAAATCCCCTGCA+TGG | 0.611807 | 3_1:-79580147 | Msa0378740:CDS |
| CATGGATGATACCATTGTTG+AGG | 0.614021 | 3_1:-79578235 | Msa0378740:intron |
| AGCACCTAATAGTTGTGAGA+AGG | 0.616905 | 3_1:-79578010 | Msa0378740:CDS |
| AGCAGCTCGGTTTCACTGGG+AGG | 0.617904 | 3_1:-79574332 | Msa0378740:CDS |
| CGAATGTGTGAAAAGGAGTG+CGG | 0.619268 | 3_1:-79574501 | Msa0378740:CDS |
| TTTGAAGCCAGTGACCGTCA+TGG | 0.619381 | 3_1:+79580537 | None:intergenic |
| TTTCCCAACTATCTTACACC+AGG | 0.619588 | 3_1:+79578281 | None:intergenic |
| GAAATAATCATTCTATCAAG+GGG | 0.621819 | 3_1:-79574261 | Msa0378740:three_prime_UTR |
| CATAATCAGATATTGGTGGA+AGG | 0.624709 | 3_1:-79574227 | Msa0378740:three_prime_UTR |
| TGGAAGCAGTGAACATAGCA+GGG | 0.626704 | 3_1:-79575284 | Msa0378740:CDS |
| AAATCTACCAACCTCAACAA+TGG | 0.627654 | 3_1:+79578224 | None:intergenic |
| AAGCATTGAGTGATCGACCA+AGG | 0.627843 | 3_1:-79575362 | Msa0378740:CDS |
| TATTCTAAAGCAAACACCAA+AGG | 0.629392 | 3_1:-79578559 | Msa0378740:CDS |
| GATCTTCCTACACTATCCGT+TGG | 0.630426 | 3_1:+79574083 | None:intergenic |
| AGAGTTGTATATGATTACAT+GGG | 0.632927 | 3_1:-79577809 | Msa0378740:CDS |
| CTAAATGGGCTCAAGAAAAG+GGG | 0.634501 | 3_1:-79580058 | Msa0378740:intron |
| GTGAGAAGGACCTTCTTCGG+TGG | 0.637166 | 3_1:-79577996 | Msa0378740:CDS |
| TATGATGTATACCTTGTAGG+AGG | 0.639841 | 3_1:-79578597 | Msa0378740:CDS |
| ATCTTGCAGAGTCTATTAGA+GGG | 0.640756 | 3_1:-79575173 | Msa0378740:CDS |
| AGCATTGAGTGATCGACCAA+GGG | 0.641314 | 3_1:-79575361 | Msa0378740:CDS |
| TCAGGCATTAAAGAGCAGCT+CGG | 0.643581 | 3_1:-79574345 | Msa0378740:CDS |
| GCTAAATGCAGCAACCACCA+GGG | 0.643905 | 3_1:+79575335 | None:intergenic |
| ACATAGCCAACGGATAGTGT+AGG | 0.644572 | 3_1:-79574089 | Msa0378740:three_prime_UTR |
| ACCTTACGAAGATATTGGAA+GGG | 0.645750 | 3_1:+79580478 | None:intergenic |
| ACAGACGAAAATAGTAGCGG+TGG | 0.648551 | 3_1:-79580335 | Msa0378740:CDS |
| TCACCATGGATTTCGAAGGA+GGG | 0.650319 | 3_1:-79577104 | Msa0378740:CDS |
| CTCACATGCTACATAGCCAA+CGG | 0.654604 | 3_1:-79574099 | Msa0378740:three_prime_UTR |
| TGATCATAATCAGATATTGG+TGG | 0.654621 | 3_1:-79574231 | Msa0378740:three_prime_UTR |
| TAGCTAGCGCATAGGGTTCG+GGG | 0.654803 | 3_1:+79580607 | None:intergenic |
| CTAAATGCAGCAACCACCAG+GGG | 0.668263 | 3_1:+79575336 | None:intergenic |
| ATAAGCTGCCATAACATGGA+CGG | 0.679548 | 3_1:+79576385 | None:intergenic |
| GGTCGAATTCCAACTCTGAG+AGG | 0.689984 | 3_1:-79574206 | Msa0378740:three_prime_UTR |
| TCGACCAAGGGATCCCCTGG+TGG | 0.701999 | 3_1:-79575349 | Msa0378740:CDS |
| TGTGCAGAAATCTATCGTTG+CGG | 0.710752 | 3_1:-79580378 | Msa0378740:CDS |
| TCCACAGACGAAAATAGTAG+CGG | 0.712769 | 3_1:-79580338 | Msa0378740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGAAATTTTGAATT+GGG | - | chr3_1:79574225-79574244 | Msa0378740:three_prime_UTR | 10.0% |
| !!! | TTTTTTTATGTATATACTTT+GGG | - | chr3_1:79579388-79579407 | Msa0378740:intron | 10.0% |
| !!! | CATTTTTTGAAATTTTGAAT+TGG | - | chr3_1:79574224-79574243 | Msa0378740:three_prime_UTR | 15.0% |
| !!! | TTTTTTGTATTGTGTAATTA+TGG | - | chr3_1:79574248-79574267 | Msa0378740:three_prime_UTR | 15.0% |
| !!! | AATTGTTTTTGTTGTTTAAT+TGG | - | chr3_1:79574271-79574290 | Msa0378740:three_prime_UTR | 15.0% |
| !! | TTCTTTCTTTCTATATTATA+TGG | - | chr3_1:79574442-79574461 | Msa0378740:CDS | 15.0% |
| !! | TATATTATATGGATGATTAA+AGG | - | chr3_1:79574453-79574472 | Msa0378740:CDS | 15.0% |
| !!! | CAATTGAAAAGTTTAAATTT+TGG | + | chr3_1:79574767-79574786 | None:intergenic | 15.0% |
| !! | GAATAAATTCTCAAAATTAT+AGG | - | chr3_1:79575435-79575454 | Msa0378740:intron | 15.0% |
| !! | TACATAAAATATAAGAAATC+AGG | + | chr3_1:79576856-79576875 | None:intergenic | 15.0% |
| !!! | TATTTTTCTATTATCTTTTC+AGG | - | chr3_1:79577126-79577145 | Msa0378740:intron | 15.0% |
| !!! | ATTTTTCTATTATCTTTTCA+GGG | - | chr3_1:79577127-79577146 | Msa0378740:intron | 15.0% |
| !!! | CAAAATAATTTGTATTTCTT+GGG | - | chr3_1:79577925-79577944 | Msa0378740:intron | 15.0% |
| !! | ATGTTTATCATGTAAATAAA+AGG | + | chr3_1:79578129-79578148 | None:intergenic | 15.0% |
| !!! | TGATTATTTTTTTTAGTGAT+AGG | - | chr3_1:79578341-79578360 | Msa0378740:intron | 15.0% |
| !!! | ATTTCAGGTTTTTATTTTTT+TGG | - | chr3_1:79578503-79578522 | Msa0378740:intron | 15.0% |
| !!! | CTTTTTTTATGTATATACTT+TGG | - | chr3_1:79579387-79579406 | Msa0378740:intron | 15.0% |
| !!! | AAGAAATTTTATCTTGAAAA+TGG | + | chr3_1:79579524-79579543 | None:intergenic | 15.0% |
| !! | ATAATGAAATTAGGAAAGAA+GGG | + | chr3_1:79574032-79574051 | None:intergenic | 20.0% |
| !! | AATAATGAAATTAGGAAAGA+AGG | + | chr3_1:79574033-79574052 | None:intergenic | 20.0% |
| !! | ATGAAGTGAATAATGAAATT+AGG | + | chr3_1:79574041-79574060 | None:intergenic | 20.0% |
| !! | TGAACAAATTAACATGTAAA+TGG | + | chr3_1:79574483-79574502 | None:intergenic | 20.0% |
| !!! | TGATTTCAATCAATTCATTT+TGG | + | chr3_1:79574630-79574649 | None:intergenic | 20.0% |
| !! | TTATATAAACTTAGAAGTCT+TGG | + | chr3_1:79574878-79574897 | None:intergenic | 20.0% |
| !!! | TTTGAAATTAAATCATGCTA+TGG | - | chr3_1:79575353-79575372 | Msa0378740:CDS | 20.0% |
| !! | ATTGTATCTCAAAAATGTTA+TGG | + | chr3_1:79575393-79575412 | None:intergenic | 20.0% |
| !! | TCAAAATTATAGGAGTAAAT+TGG | - | chr3_1:79575445-79575464 | Msa0378740:intron | 20.0% |
| !!! | ACTTCAAAGAATTTTAGATA+TGG | - | chr3_1:79576251-79576270 | Msa0378740:intron | 20.0% |
| !! | GGAAAGAAATATAAGAAAAA+CGG | + | chr3_1:79576713-79576732 | None:intergenic | 20.0% |
| !!! | ACTGAATTTTCTGTATAAAT+AGG | - | chr3_1:79576757-79576776 | Msa0378740:intron | 20.0% |
| !! | AATAGAAAAATAATTCATCC+AGG | + | chr3_1:79577118-79577137 | None:intergenic | 20.0% |
| !! | ATAAACCACATAAAATTGAA+AGG | + | chr3_1:79577891-79577910 | None:intergenic | 20.0% |
| !!! | GCAAAATAATTTGTATTTCT+TGG | - | chr3_1:79577924-79577943 | Msa0378740:intron | 20.0% |
| !! | TTTATCATGTAAATAAAAGG+AGG | + | chr3_1:79578126-79578145 | None:intergenic | 20.0% |
| !!! | ATTTATAACCCTTTTTGTTT+TGG | - | chr3_1:79578283-79578302 | Msa0378740:CDS | 20.0% |
| !! | TTCTTAATCCAAAACAAAAA+GGG | + | chr3_1:79578294-79578313 | None:intergenic | 20.0% |
| !! | TTTCTTAATCCAAAACAAAA+AGG | + | chr3_1:79578295-79578314 | None:intergenic | 20.0% |
| !! | TTTCGTTATAATCAAATTTC+AGG | - | chr3_1:79578488-79578507 | Msa0378740:intron | 20.0% |
| !!! | GTATAATTATCTGAAACAAA+TGG | - | chr3_1:79578625-79578644 | Msa0378740:intron | 20.0% |
| !! | TGCAATAAACTAATATCAAA+AGG | + | chr3_1:79578799-79578818 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAGGATACAAAAA+TGG | - | chr3_1:79579436-79579455 | Msa0378740:intron | 20.0% |
| !! | GAAATATTCATACATTAACA+AGG | + | chr3_1:79579843-79579862 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGTCAATTTGAC+AGG | - | chr3_1:79579879-79579898 | Msa0378740:intron | 20.0% |
| !! | ATGAAATAATCATTCTATCA+AGG | - | chr3_1:79580183-79580202 | Msa0378740:intron | 20.0% |
| !! | TGAAATAATCATTCTATCAA+GGG | - | chr3_1:79580184-79580203 | Msa0378740:intron | 20.0% |
| !!! | TCTAATAATTTTGTATCTTC+TGG | - | chr3_1:79580509-79580528 | Msa0378740:CDS | 20.0% |
| !!! | CTAATAATTTTGTATCTTCT+GGG | - | chr3_1:79580510-79580529 | Msa0378740:CDS | 20.0% |
| !!! | TAATAATTTTGTATCTTCTG+GGG | - | chr3_1:79580511-79580530 | Msa0378740:CDS | 20.0% |
| !! | AATTCTGTAAATGATTGATA+TGG | - | chr3_1:79580554-79580573 | Msa0378740:exon | 20.0% |
| !!! | TAATCTTTGAGAGATTAATT+TGG | - | chr3_1:79580585-79580604 | Msa0378740:five_prime_UTR | 20.0% |
| ! | TTCATTATTCACTTCATTCA+AGG | - | chr3_1:79574044-79574063 | Msa0378740:three_prime_UTR | 25.0% |
| !!! | TTTTGTTGTTTAATTGGTGA+AGG | - | chr3_1:79574277-79574296 | Msa0378740:three_prime_UTR | 25.0% |
| !! | TTTTCAATTGCATTATCATC+TGG | - | chr3_1:79574777-79574796 | Msa0378740:intron | 25.0% |
| ! | ATTACAGTAATGATGTAAGA+TGG | - | chr3_1:79574952-79574971 | Msa0378740:intron | 25.0% |
| ! | ATTATAGAGAAATTCTTGCA+TGG | - | chr3_1:79574980-79574999 | Msa0378740:intron | 25.0% |
| !! | CTTATTCTTTTCCAAATAGT+TGG | + | chr3_1:79575250-79575269 | None:intergenic | 25.0% |
| ! | GAAAAGAATAAGAACAACTA+TGG | - | chr3_1:79575258-79575277 | Msa0378740:CDS | 25.0% |
| ! | GATACAATTGAATAGCTAAT+AGG | - | chr3_1:79575405-79575424 | Msa0378740:intron | 25.0% |
| !!! | ACAATTTTAACAGAAGACAA+TGG | + | chr3_1:79575525-79575544 | None:intergenic | 25.0% |
| ! | CAATTTCTTGACATTTCAAA+AGG | + | chr3_1:79575810-79575829 | None:intergenic | 25.0% |
| ! | GTTATAATATCAAAGTCCTT+TGG | + | chr3_1:79575906-79575925 | None:intergenic | 25.0% |
| ! | TCATTTGGATTTGCATAAAA+GGG | - | chr3_1:79576081-79576100 | Msa0378740:intron | 25.0% |
| ! | AAACAGCAATACAAGAAAAA+CGG | + | chr3_1:79576326-79576345 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTATTGCTGTTTA+TGG | - | chr3_1:79576327-79576346 | Msa0378740:intron | 25.0% |
| ! | CATAAGTACAAAATAATGTG+TGG | + | chr3_1:79576568-79576587 | None:intergenic | 25.0% |
| ! | CATATACAACTCTTTCATAT+GGG | + | chr3_1:79576630-79576649 | None:intergenic | 25.0% |
| ! | TCATATACAACTCTTTCATA+TGG | + | chr3_1:79576631-79576650 | None:intergenic | 25.0% |
| ! | AAGAGTTGTATATGATTACA+TGG | - | chr3_1:79576636-79576655 | Msa0378740:intron | 25.0% |
| ! | AGAGTTGTATATGATTACAT+GGG | - | chr3_1:79576637-79576656 | Msa0378740:intron | 25.0% |
| !! | TTATGTAGTGTAAACCATTT+TGG | - | chr3_1:79576869-79576888 | Msa0378740:intron | 25.0% |
| ! | CTTAGGATTTAGTATATCTA+AGG | - | chr3_1:79576983-79577002 | Msa0378740:intron | 25.0% |
| ! | ATTTAGTATATCTAAGGAGA+CGG | - | chr3_1:79576989-79577008 | Msa0378740:intron | 25.0% |
| ! | TTCAGTATTAAGACTTGATA+AGG | - | chr3_1:79577037-79577056 | Msa0378740:intron | 25.0% |
| !! | ATGAATTATATGCTAGCTTA+TGG | - | chr3_1:79577166-79577185 | Msa0378740:intron | 25.0% |
| ! | AAATTAACATATACCTGGAA+GGG | + | chr3_1:79577250-79577269 | None:intergenic | 25.0% |
| ! | AAAATTAACATATACCTGGA+AGG | + | chr3_1:79577251-79577270 | None:intergenic | 25.0% |
| ! | ATGCAAAATTAACATATACC+TGG | + | chr3_1:79577255-79577274 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTTGACTCAATCA+TGG | - | chr3_1:79577274-79577293 | Msa0378740:CDS | 25.0% |
| !! | GTAAGAAAGCTTTAATGAAA+AGG | + | chr3_1:79577794-79577813 | None:intergenic | 25.0% |
| ! | CAAATAAAAAACTGTCAATG+TGG | + | chr3_1:79577981-79578000 | None:intergenic | 25.0% |
| !!! | CAGTTTTTTATTTGACCTTT+TGG | - | chr3_1:79577987-79578006 | Msa0378740:CDS | 25.0% |
| !!! | TTTTCTCTAGAATTGCAATT+AGG | - | chr3_1:79578204-79578223 | Msa0378740:intron | 25.0% |
| ! | TGAGAGATAATATTAAAGAG+TGG | + | chr3_1:79578415-79578434 | None:intergenic | 25.0% |
| !! | ACTAATTTGTCTAAATCCTT+TGG | - | chr3_1:79578841-79578860 | Msa0378740:intron | 25.0% |
| ! | AATCATACTATAATTGCCAA+AGG | + | chr3_1:79578860-79578879 | None:intergenic | 25.0% |
| !! | ATAGCTAAATCTATGTTTTC+AGG | - | chr3_1:79579039-79579058 | Msa0378740:intron | 25.0% |
| ! | AAAAAGAAAAAATGCTCACT+AGG | + | chr3_1:79579373-79579392 | None:intergenic | 25.0% |
| !! | TAGCATTTTCCATATACTTT+AGG | - | chr3_1:79579598-79579617 | Msa0378740:intron | 25.0% |
| ! | TGGATGATTAATAATAGTTC+AGG | + | chr3_1:79579663-79579682 | None:intergenic | 25.0% |
| ! | TTAAACTTCGTAAAAAGATG+TGG | + | chr3_1:79579817-79579836 | None:intergenic | 25.0% |
| ! | GAAATAATCATTCTATCAAG+GGG | - | chr3_1:79580185-79580204 | Msa0378740:intron | 25.0% |
| !!! | ATCTCTTTTGATTTCCATGA+CGG | - | chr3_1:79573895-79573914 | Msa0378740:three_prime_UTR | 30.0% |
| CTAGCCTAGATAAAAGTAAA+AGG | + | chr3_1:79574738-79574757 | None:intergenic | 30.0% | |
| GAAACAAACAACGTAATTGT+TGG | + | chr3_1:79575161-79575180 | None:intergenic | 30.0% | |
| TAGTTGGATGAAGGTTAATT+AGG | + | chr3_1:79575234-79575253 | None:intergenic | 30.0% | |
| TTAACCTTCATCCAACTATT+TGG | - | chr3_1:79575236-79575255 | Msa0378740:CDS | 30.0% | |
| ! | TTTTCCAAATAGTTGGATGA+AGG | + | chr3_1:79575243-79575262 | None:intergenic | 30.0% |
| ACAATTGAATAGCTAATAGG+TGG | - | chr3_1:79575408-79575427 | Msa0378740:intron | 30.0% | |
| AACAACAACTTAGACATGTT+TGG | - | chr3_1:79575475-79575494 | Msa0378740:intron | 30.0% | |
| ACAACAACTTAGACATGTTT+GGG | - | chr3_1:79575476-79575495 | Msa0378740:intron | 30.0% | |
| !! | ATTTTAACAGAAGACAATGG+AGG | + | chr3_1:79575522-79575541 | None:intergenic | 30.0% |
| !! | GTGTCGCATTTTTATTTGTT+GGG | - | chr3_1:79575666-79575685 | Msa0378740:intron | 30.0% |
| AATCAAGAGAAATTCTTGCA+TGG | + | chr3_1:79575719-79575738 | None:intergenic | 30.0% | |
| !! | TATGTTTCACTGCTTTTGAT+TGG | - | chr3_1:79575763-79575782 | Msa0378740:intron | 30.0% |
| TTTCTTGACATTTCAAAAGG+AGG | + | chr3_1:79575807-79575826 | None:intergenic | 30.0% | |
| ! | AATTGTTTTCTTCTCGTTGT+AGG | - | chr3_1:79575825-79575844 | Msa0378740:intron | 30.0% |
| !! | TATTCTAAAGCAAACACCAA+AGG | - | chr3_1:79575887-79575906 | Msa0378740:intron | 30.0% |
| TTTACGAACTTACAGTCTAT+TGG | - | chr3_1:79575984-79576003 | Msa0378740:intron | 30.0% | |
| TATTAACTCAGCTCAATCTA+TGG | + | chr3_1:79576016-79576035 | None:intergenic | 30.0% | |
| AAACACAGTTACAACTTACA+AGG | - | chr3_1:79576036-79576055 | Msa0378740:intron | 30.0% | |
| AACACAGTTACAACTTACAA+GGG | - | chr3_1:79576037-79576056 | Msa0378740:intron | 30.0% | |
| GTCATTTGGATTTGCATAAA+AGG | - | chr3_1:79576080-79576099 | Msa0378740:intron | 30.0% | |
| AACAGCAATACAAGAAAAAC+GGG | + | chr3_1:79576325-79576344 | None:intergenic | 30.0% | |
| GTTAAAACTTGACACCTAAT+TGG | + | chr3_1:79576372-79576391 | None:intergenic | 30.0% | |
| ATCCTGCAGATATTTCATTT+CGG | - | chr3_1:79576792-79576811 | Msa0378740:intron | 30.0% | |
| ATACTATAATGCTAATGTCC+TGG | - | chr3_1:79577097-79577116 | Msa0378740:CDS | 30.0% | |
| !! | TTCTATTATCTTTTCAGGGA+AGG | - | chr3_1:79577131-79577150 | Msa0378740:intron | 30.0% |
| GCATATAATTCATTTCCATC+AGG | + | chr3_1:79577159-79577178 | None:intergenic | 30.0% | |
| TTGCGGTTATTATGGAAATT+TGG | - | chr3_1:79577205-79577224 | Msa0378740:intron | 30.0% | |
| GGAATGAATGTTTATTGAGA+TGG | - | chr3_1:79577295-79577314 | Msa0378740:CDS | 30.0% | |
| ! | TCTAGTTTAAGTCATATGCA+AGG | + | chr3_1:79577573-79577592 | None:intergenic | 30.0% |
| ATACAATTGCTCAACCAAAA+AGG | + | chr3_1:79577766-79577785 | None:intergenic | 30.0% | |
| ! | GAAAGCTTTAATGAAAAGGT+AGG | + | chr3_1:79577790-79577809 | None:intergenic | 30.0% |
| ! | AGGATCCTTTCAATTTTATG+TGG | - | chr3_1:79577883-79577902 | Msa0378740:intron | 30.0% |
| GTGGTTTATCAAACTAATCT+TGG | - | chr3_1:79577902-79577921 | Msa0378740:intron | 30.0% | |
| ! | CTCCAATTTAGATAAGCTTT+TGG | - | chr3_1:79578031-79578050 | Msa0378740:CDS | 30.0% |
| AGCCAAAAGCTTATCTAAAT+TGG | + | chr3_1:79578036-79578055 | None:intergenic | 30.0% | |
| ! | TAAAGGCAATTTTGTTGCAA+AGG | + | chr3_1:79578094-79578113 | None:intergenic | 30.0% |
| AAATTCACGTCTTCAAACAT+AGG | + | chr3_1:79578267-79578286 | None:intergenic | 30.0% | |
| TTTGTTACAAGAGTAATGCT+AGG | - | chr3_1:79578385-79578404 | Msa0378740:intron | 30.0% | |
| ! | TTACATTGATGACAAGCATA+AGG | + | chr3_1:79578718-79578737 | None:intergenic | 30.0% |
| ATGAACAATCTCATTACAAG+TGG | - | chr3_1:79578998-79579017 | Msa0378740:intron | 30.0% | |
| TCAGGAAATCTCATATCATT+TGG | + | chr3_1:79579200-79579219 | None:intergenic | 30.0% | |
| ! | TGATGAACATTTTGTATCTC+AGG | - | chr3_1:79579313-79579332 | Msa0378740:intron | 30.0% |
| GGATAACATCCTAAAGTATA+TGG | + | chr3_1:79579610-79579629 | None:intergenic | 30.0% | |
| AATGGAAGTCTCGATTTAAT+TGG | + | chr3_1:79579683-79579702 | None:intergenic | 30.0% | |
| GTCTTTACGTACAATTCTAA+TGG | + | chr3_1:79579913-79579932 | None:intergenic | 30.0% | |
| AAAAAATCTCTGTCAAAGCA+AGG | - | chr3_1:79579970-79579989 | Msa0378740:intron | 30.0% | |
| TTGTATATCACCATTAGCTA+AGG | + | chr3_1:79580016-79580035 | None:intergenic | 30.0% | |
| GTCTGATCATAATCAGATAT+TGG | - | chr3_1:79580212-79580231 | Msa0378740:intron | 30.0% | |
| TGATCATAATCAGATATTGG+TGG | - | chr3_1:79580215-79580234 | Msa0378740:intron | 30.0% | |
| !!! | CTTAATTTTTTGTCAACGCT+TGG | - | chr3_1:79580283-79580302 | Msa0378740:intron | 30.0% |
| !!! | CGAATGTTTTTTGCCTTTTT+GGG | + | chr3_1:79580414-79580433 | None:intergenic | 30.0% |
| CCAAAAAGGCAAAAAACATT+CGG | - | chr3_1:79580412-79580431 | Msa0378740:intron | 30.0% | |
| TCTGTAAATGATTGATATGG+TGG | - | chr3_1:79580557-79580576 | Msa0378740:exon | 30.0% | |
| ! | TCTTTGAGAGATTAATTTGG+CGG | - | chr3_1:79580588-79580607 | Msa0378740:five_prime_UTR | 30.0% |
| ACCTTACGAAGATATTGGAA+GGG | + | chr3_1:79573971-79573990 | None:intergenic | 35.0% | |
| TACCTTACGAAGATATTGGA+AGG | + | chr3_1:79573972-79573991 | None:intergenic | 35.0% | |
| TTGGTACCTTACGAAGATAT+TGG | + | chr3_1:79573976-79573995 | None:intergenic | 35.0% | |
| AATGTAGATGAAGATGAGTG+AGG | + | chr3_1:79574000-79574019 | None:intergenic | 35.0% | |
| ! | ATTTTCGTCTGTGGAAGTTT+CGG | + | chr3_1:79574103-79574122 | None:intergenic | 35.0% |
| TGTCAGTAGTGAAGAAATCA+AGG | - | chr3_1:79574189-79574208 | Msa0378740:three_prime_UTR | 35.0% | |
| GTCAGTAGTGAAGAAATCAA+GGG | - | chr3_1:79574190-79574209 | Msa0378740:three_prime_UTR | 35.0% | |
| ATTGTGAATTCCAAGCTCTT+TGG | + | chr3_1:79574338-79574357 | None:intergenic | 35.0% | |
| ! | TTCTAAATGGGCTCAAGAAA+AGG | - | chr3_1:79574386-79574405 | Msa0378740:CDS | 35.0% |
| ! | TCTAAATGGGCTCAAGAAAA+GGG | - | chr3_1:79574387-79574406 | Msa0378740:CDS | 35.0% |
| !!! | TTCATTTTGGTGCTTTGTGA+AGG | + | chr3_1:79574617-79574636 | None:intergenic | 35.0% |
| !! | GGTGCCTTTTACTTTTATCT+AGG | - | chr3_1:79574731-79574750 | Msa0378740:intron | 35.0% |
| !! | TAGAACAATAGCCTTGTAAC+TGG | - | chr3_1:79574817-79574836 | Msa0378740:intron | 35.0% |
| AACATACAAGACCAGTTACA+AGG | + | chr3_1:79574831-79574850 | None:intergenic | 35.0% | |
| TCATAGCTTAAGCACACATA+AGG | - | chr3_1:79574850-79574869 | Msa0378740:intron | 35.0% | |
| ACAAACAACGTAATTGTTGG+AGG | + | chr3_1:79575158-79575177 | None:intergenic | 35.0% | |
| TGTCGAAAAGATAAACCTCT+CGG | - | chr3_1:79575195-79575214 | Msa0378740:CDS | 35.0% | |
| TGGATGAAGGTTAATTAGGT+CGG | + | chr3_1:79575230-79575249 | None:intergenic | 35.0% | |
| !! | GTTTCCGTTGATTTCATTCA+TGG | - | chr3_1:79575543-79575562 | Msa0378740:intron | 35.0% |
| ACCACCATGAATGAAATCAA+CGG | + | chr3_1:79575550-79575569 | None:intergenic | 35.0% | |
| ! | TTCATTCATGGTGGTGATAT+TGG | - | chr3_1:79575555-79575574 | Msa0378740:intron | 35.0% |
| ! | TCATTCATGGTGGTGATATT+GGG | - | chr3_1:79575556-79575575 | Msa0378740:intron | 35.0% |
| !! | CGTGTCGCATTTTTATTTGT+TGG | - | chr3_1:79575665-79575684 | Msa0378740:intron | 35.0% |
| GGATATGATGTATACCTTGT+AGG | - | chr3_1:79575846-79575865 | Msa0378740:intron | 35.0% | |
| TATGATGTATACCTTGTAGG+AGG | - | chr3_1:79575849-79575868 | Msa0378740:intron | 35.0% | |
| ACACAGTTACAACTTACAAG+GGG | - | chr3_1:79576038-79576057 | Msa0378740:intron | 35.0% | |
| GTTTGTCATGCAATCATACA+AGG | + | chr3_1:79576112-79576131 | None:intergenic | 35.0% | |
| !! | CAAACATTGACTCAATTTGC+AGG | - | chr3_1:79576127-79576146 | Msa0378740:intron | 35.0% |
| !!! | AGGTGATGAAAGTATTTTCC+TGG | - | chr3_1:79576147-79576166 | Msa0378740:intron | 35.0% |
| ! | TTTTCCTGGTGTAAGATAGT+TGG | - | chr3_1:79576161-79576180 | Msa0378740:intron | 35.0% |
| TTTCCTGGTGTAAGATAGTT+GGG | - | chr3_1:79576162-79576181 | Msa0378740:intron | 35.0% | |
| AAATCTACCAACCTCAACAA+TGG | + | chr3_1:79576225-79576244 | None:intergenic | 35.0% | |
| ! | ATTTTATCTCCCGTCCAATT+AGG | - | chr3_1:79576355-79576374 | Msa0378740:intron | 35.0% |
| AAACTTGACACCTAATTGGA+CGG | + | chr3_1:79576368-79576387 | None:intergenic | 35.0% | |
| !! | TCAAGTTTTAACACTGCTAG+AGG | - | chr3_1:79576380-79576399 | Msa0378740:intron | 35.0% |
| GGTGGAAGAATTGTTTAAAC+CGG | - | chr3_1:79576468-79576487 | Msa0378740:intron | 35.0% | |
| GTGGAAGAATTGTTTAAACC+GGG | - | chr3_1:79576469-79576488 | Msa0378740:intron | 35.0% | |
| AACCGGGACTTTACAATTAA+TGG | - | chr3_1:79576485-79576504 | Msa0378740:intron | 35.0% | |
| ACCGGGACTTTACAATTAAT+GGG | - | chr3_1:79576486-79576505 | Msa0378740:intron | 35.0% | |
| ACCCATTAATTGTAAAGTCC+CGG | + | chr3_1:79576490-79576509 | None:intergenic | 35.0% | |
| AACTAACTTCATGTTCTTGC+AGG | - | chr3_1:79576593-79576612 | Msa0378740:intron | 35.0% | |
| GTTGTATATGATTACATGGG+AGG | - | chr3_1:79576640-79576659 | Msa0378740:intron | 35.0% | |
| TCCTGCAGATATTTCATTTC+GGG | - | chr3_1:79576793-79576812 | Msa0378740:intron | 35.0% | |
| ATTTCATTTCGGGAAGATTG+TGG | - | chr3_1:79576803-79576822 | Msa0378740:intron | 35.0% | |
| ! | TATATGCTAGCTTATGGTTC+TGG | - | chr3_1:79577172-79577191 | Msa0378740:intron | 35.0% |
| AAGCTTCTTTGCGGTTATTA+TGG | - | chr3_1:79577197-79577216 | Msa0378740:intron | 35.0% | |
| TTATTGAGATGGAACATCAC+AGG | - | chr3_1:79577306-79577325 | Msa0378740:intron | 35.0% | |
| ! | CAAAAGGACCAATATGCTTT+TGG | - | chr3_1:79577366-79577385 | Msa0378740:intron | 35.0% |
| ! | ACCAATATGCTTTTGGTAAG+TGG | - | chr3_1:79577373-79577392 | Msa0378740:intron | 35.0% |
| ! | ACCACTTACCAAAAGCATAT+TGG | + | chr3_1:79577377-79577396 | None:intergenic | 35.0% |
| TGGTTATCCAGAAAACTTTC+CGG | + | chr3_1:79577426-79577445 | None:intergenic | 35.0% | |
| AGGAAGAATGATCTCTTGTA+TGG | + | chr3_1:79577446-79577465 | None:intergenic | 35.0% | |
| AGGATAACAAACAAGCTACT+GGG | + | chr3_1:79577476-79577495 | None:intergenic | 35.0% | |
| TCCAAAATATGTGCTTGTTC+AGG | - | chr3_1:79577513-79577532 | Msa0378740:intron | 35.0% | |
| ! | TCCTGAACAAGCACATATTT+TGG | + | chr3_1:79577517-79577536 | None:intergenic | 35.0% |
| ! | TCCTTTTGTTCCACTACTTA+AGG | - | chr3_1:79577611-79577630 | Msa0378740:intron | 35.0% |
| ! | TCCTTAAGTAGTGGAACAAA+AGG | + | chr3_1:79577615-79577634 | None:intergenic | 35.0% |
| TTGCTCAACCAAAAAGGATT+TGG | + | chr3_1:79577760-79577779 | None:intergenic | 35.0% | |
| GACTGCAATGAAATTCCAAA+AGG | + | chr3_1:79578005-79578024 | None:intergenic | 35.0% | |
| ATGTGTAATGCTTTGTGAAG+AGG | - | chr3_1:79578150-79578169 | Msa0378740:intron | 35.0% | |
| !! | AACAAACACAGATTAGCTTC+TGG | + | chr3_1:79578371-79578390 | None:intergenic | 35.0% |
| GACATTTCCTCAGAAACAAA+GGG | + | chr3_1:79578675-79578694 | None:intergenic | 35.0% | |
| AGACATTTCCTCAGAAACAA+AGG | + | chr3_1:79578676-79578695 | None:intergenic | 35.0% | |
| CATTACAAGTGGATCAACAA+AGG | - | chr3_1:79579009-79579028 | Msa0378740:intron | 35.0% | |
| TCAATGCTTTATGCAATGCT+AGG | + | chr3_1:79579073-79579092 | None:intergenic | 35.0% | |
| ATCTTGCAGAGTCTATTAGA+GGG | - | chr3_1:79579273-79579292 | Msa0378740:intron | 35.0% | |
| ! | ACATTTTGTATCTCAGGCTA+TGG | - | chr3_1:79579319-79579338 | Msa0378740:intron | 35.0% |
| TTAACAAGTGCCCTAACTAA+GGG | - | chr3_1:79579555-79579574 | Msa0378740:intron | 35.0% | |
| TAAACAAGTGCCCTTAGTTA+GGG | + | chr3_1:79579568-79579587 | None:intergenic | 35.0% | |
| TTAAACAAGTGCCCTTAGTT+AGG | + | chr3_1:79579569-79579588 | None:intergenic | 35.0% | |
| !! | TAACTAAGGGCACTTGTTTA+AGG | - | chr3_1:79579568-79579587 | Msa0378740:intron | 35.0% |
| TTAGGATGTTATCCAGTACA+TGG | - | chr3_1:79579616-79579635 | Msa0378740:intron | 35.0% | |
| ! | ACGTTTTCGAATGTGTGAAA+AGG | - | chr3_1:79579938-79579957 | Msa0378740:intron | 35.0% |
| GATTATGAGTCCTTAGCTAA+TGG | - | chr3_1:79580003-79580022 | Msa0378740:intron | 35.0% | |
| CATAATCAGATATTGGTGGA+AGG | - | chr3_1:79580219-79580238 | Msa0378740:intron | 35.0% | |
| !!! | ATTTTTTGTCAACGCTTGGA+AGG | - | chr3_1:79580287-79580306 | Msa0378740:intron | 35.0% |
| !!! | TTTTTTGTCAACGCTTGGAA+GGG | - | chr3_1:79580288-79580307 | Msa0378740:intron | 35.0% |
| !!! | TTTTTTGCCTTTTTGGGATG+GGG | + | chr3_1:79580408-79580427 | None:intergenic | 35.0% |
| !!! | GTTTTTTGCCTTTTTGGGAT+GGG | + | chr3_1:79580409-79580428 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGCCTTTTTGGGA+TGG | + | chr3_1:79580410-79580429 | None:intergenic | 35.0% |
| !!! | CCGAATGTTTTTTGCCTTTT+TGG | + | chr3_1:79580415-79580434 | None:intergenic | 35.0% |
| ! | AAACATTCGGTCTTCAGTTT+TGG | - | chr3_1:79580425-79580444 | Msa0378740:intron | 35.0% |
| ! | AACATTCGGTCTTCAGTTTT+GGG | - | chr3_1:79580426-79580445 | Msa0378740:intron | 35.0% |
| TTTGGACGGAGTAATTAGTA+TGG | + | chr3_1:79580615-79580634 | None:intergenic | 35.0% | |
| TCCCTTCCAATATCTTCGTA+AGG | - | chr3_1:79573967-79573986 | Msa0378740:three_prime_UTR | 40.0% | |
| AGATGAAGATGAGTGAGGAT+TGG | + | chr3_1:79573995-79574014 | None:intergenic | 40.0% | |
| TGTGCAGAAATCTATCGTTG+CGG | - | chr3_1:79574068-79574087 | Msa0378740:three_prime_UTR | 40.0% | |
| TCCACAGACGAAAATAGTAG+CGG | - | chr3_1:79574108-79574127 | Msa0378740:three_prime_UTR | 40.0% | |
| TACCTATCTTCTTCCATGCA+GGG | + | chr3_1:79574315-79574334 | None:intergenic | 40.0% | |
| AAGATAGGTACCAAAGAGCT+TGG | - | chr3_1:79574325-79574344 | Msa0378740:exon | 40.0% | |
| GGAATTCACAATTCGTCCAT+TGG | - | chr3_1:79574346-79574365 | Msa0378740:CDS | 40.0% | |
| ! | CTAAATGGGCTCAAGAAAAG+GGG | - | chr3_1:79574388-79574407 | Msa0378740:CDS | 40.0% |
| !! | TGTGAAGGTACTTAGATGCA+CGG | + | chr3_1:79574602-79574621 | None:intergenic | 40.0% |
| ! | CCACTGTTTTCACATTGACA+AGG | + | chr3_1:79574713-79574732 | None:intergenic | 40.0% |
| CCTTGTCAATGTGAAAACAG+TGG | - | chr3_1:79574710-79574729 | Msa0378740:intron | 40.0% | |
| GAGAAATTCTTGCATGGTCT+CGG | - | chr3_1:79574986-79575005 | Msa0378740:intron | 40.0% | |
| AACAACGTAATTGTTGGAGG+CGG | + | chr3_1:79575155-79575174 | None:intergenic | 40.0% | |
| !! | TCCGTTGATTTCATTCATGG+TGG | - | chr3_1:79575546-79575565 | Msa0378740:intron | 40.0% |
| GAGAAATTCTTGCATGGTCT+CGG | + | chr3_1:79574986-79575005 | None:intergenic | 40.0% | |
| AACTTCAGCTGAGCTAAAAG+AGG | - | chr3_1:79575923-79575942 | Msa0378740:intron | 40.0% | |
| GTTGTGCTTACACTGTCATT+TGG | - | chr3_1:79576066-79576085 | Msa0378740:intron | 40.0% | |
| TTTCCCAACTATCTTACACC+AGG | + | chr3_1:79576168-79576187 | None:intergenic | 40.0% | |
| TCCATGTGAACATGGCATAT+GGG | + | chr3_1:79576197-79576216 | None:intergenic | 40.0% | |
| ATCCATGTGAACATGGCATA+TGG | + | chr3_1:79576198-79576217 | None:intergenic | 40.0% | |
| TGGTATCATCCATGTGAACA+TGG | + | chr3_1:79576205-79576224 | None:intergenic | 40.0% | |
| CATGGATGATACCATTGTTG+AGG | - | chr3_1:79576211-79576230 | Msa0378740:intron | 40.0% | |
| GATGATACCATTGTTGAGGT+TGG | - | chr3_1:79576215-79576234 | Msa0378740:intron | 40.0% | |
| AACTTGACACCTAATTGGAC+GGG | + | chr3_1:79576367-79576386 | None:intergenic | 40.0% | |
| AGCACCTAATAGTTGTGAGA+AGG | - | chr3_1:79576436-79576455 | Msa0378740:intron | 40.0% | |
| AGGTCCTTCTCACAACTATT+AGG | + | chr3_1:79576443-79576462 | None:intergenic | 40.0% | |
| AACAATTCTTCCACCGAAGA+AGG | + | chr3_1:79576463-79576482 | None:intergenic | 40.0% | |
| CAACTCTTTCATATGGGTCA+AGG | + | chr3_1:79576624-79576643 | None:intergenic | 40.0% | |
| AAAACCCTCACAATTCTGCT+GGG | + | chr3_1:79576734-79576753 | None:intergenic | 40.0% | |
| AAAAACCCTCACAATTCTGC+TGG | + | chr3_1:79576735-79576754 | None:intergenic | 40.0% | |
| TCCCGAAATGAAATATCTGC+AGG | + | chr3_1:79576797-79576816 | None:intergenic | 40.0% | |
| AAGCGTAGGTGATTCCAAAA+TGG | + | chr3_1:79576886-79576905 | None:intergenic | 40.0% | |
| ! | ACCTACGCTTTGAATTAGCT+TGG | - | chr3_1:79576896-79576915 | Msa0378740:intron | 40.0% |
| ACCAAGCTAATTCAAAGCGT+AGG | + | chr3_1:79576900-79576919 | None:intergenic | 40.0% | |
| CGAGCTGAAGAAAGGAAAAA+TGG | + | chr3_1:79576933-79576952 | None:intergenic | 40.0% | |
| ATTAGAATTGCTGCTCGCTT+AGG | - | chr3_1:79576966-79576985 | Msa0378740:intron | 40.0% | |
| AGATATACTTCTTCCCTTCC+AGG | - | chr3_1:79577234-79577253 | Msa0378740:CDS | 40.0% | |
| ! | GTTTACACCGGAAAGTTTTC+TGG | - | chr3_1:79577416-79577435 | Msa0378740:CDS | 40.0% |
| CAGGATAACAAACAAGCTAC+TGG | + | chr3_1:79577477-79577496 | None:intergenic | 40.0% | |
| ! | GGAAGCACAACTTCATTTAC+AGG | + | chr3_1:79577496-79577515 | None:intergenic | 40.0% |
| TATCGCATGTCCTTAAGTAG+TGG | + | chr3_1:79577624-79577643 | None:intergenic | 40.0% | |
| ! | ACAAGCCACCAAATCCTTTT+TGG | - | chr3_1:79577749-79577768 | Msa0378740:intron | 40.0% |
| CTCAACCAAAAAGGATTTGG+TGG | + | chr3_1:79577757-79577776 | None:intergenic | 40.0% | |
| ATAAGCTGCCATAACATGGA+CGG | + | chr3_1:79578064-79578083 | None:intergenic | 40.0% | |
| TACCATAAGCTGCCATAACA+TGG | + | chr3_1:79578068-79578087 | None:intergenic | 40.0% | |
| ! | AAAGGAGGCACAGAAGATAA+AGG | + | chr3_1:79578111-79578130 | None:intergenic | 40.0% |
| CCAATGACGAAAACTGAGAA+AGG | + | chr3_1:79578891-79578910 | None:intergenic | 40.0% | |
| ! | CCTTTCTCAGTTTTCGTCAT+TGG | - | chr3_1:79578888-79578907 | Msa0378740:intron | 40.0% |
| CACAAAGACTCAGAACAGTT+AGG | + | chr3_1:79578948-79578967 | None:intergenic | 40.0% | |
| ! | CTAACTGTTCTGAGTCTTTG+TGG | - | chr3_1:79578946-79578965 | Msa0378740:intron | 40.0% |
| TTCTGAGTCTTTGTGGAACA+TGG | - | chr3_1:79578953-79578972 | Msa0378740:intron | 40.0% | |
| !! | TTTAGCCTTGCAGTCCATAA+TGG | - | chr3_1:79579128-79579147 | Msa0378740:intron | 40.0% |
| CCAACAAATTCCCACCATTA+TGG | + | chr3_1:79579145-79579164 | None:intergenic | 40.0% | |
| ! | CCATAATGGTGGGAATTTGT+TGG | - | chr3_1:79579142-79579161 | Msa0378740:intron | 40.0% |
| CCAGAAGGATCTAACAATTC+AGG | + | chr3_1:79579218-79579237 | None:intergenic | 40.0% | |
| CCTGAATTGTTAGATCCTTC+TGG | - | chr3_1:79579215-79579234 | Msa0378740:intron | 40.0% | |
| TCCTTCTGGTATGAATGCAA+AGG | - | chr3_1:79579229-79579248 | Msa0378740:intron | 40.0% | |
| ! | TGGTATGAATGCAAAGGCAT+TGG | - | chr3_1:79579235-79579254 | Msa0378740:intron | 40.0% |
| GATCTTGCAGAGTCTATTAG+AGG | - | chr3_1:79579272-79579291 | Msa0378740:intron | 40.0% | |
| !! | ATCCTTAAAAAGTGCCCTCA+GGG | + | chr3_1:79579429-79579448 | None:intergenic | 40.0% |
| !! | TATCCTTAAAAAGTGCCCTC+AGG | + | chr3_1:79579430-79579449 | None:intergenic | 40.0% |
| CTTAACAAGTGCCCTAACTA+AGG | - | chr3_1:79579554-79579573 | Msa0378740:intron | 40.0% | |
| ! | ACTTCCATTTTCCTCTCCAA+TGG | - | chr3_1:79579694-79579713 | Msa0378740:intron | 40.0% |
| TGGGTAAAACATGTAGAGAG+AGG | - | chr3_1:79579729-79579748 | Msa0378740:intron | 40.0% | |
| GGGTAAAACATGTAGAGAGA+GGG | - | chr3_1:79579730-79579749 | Msa0378740:intron | 40.0% | |
| TTAATGCCTGATCCTGATCT+TGG | + | chr3_1:79580092-79580111 | None:intergenic | 40.0% | |
| TGTGAGTGAGTTAAATGCCT+TGG | + | chr3_1:79580333-79580352 | None:intergenic | 40.0% | |
| TTGATTTCCATGACGGTCAC+TGG | - | chr3_1:79573902-79573921 | Msa0378740:three_prime_UTR | 45.0% | |
| GACGAAGATGAAGAGTGGAT+TGG | + | chr3_1:79573943-79573962 | None:intergenic | 45.0% | |
| CGAAGATATTGGAAGGGAGT+GGG | + | chr3_1:79573965-79573984 | None:intergenic | 45.0% | |
| ACGAAGATATTGGAAGGGAG+TGG | + | chr3_1:79573966-79573985 | None:intergenic | 45.0% | |
| ! | ACCGCTACTATTTTCGTCTG+TGG | + | chr3_1:79574112-79574131 | None:intergenic | 45.0% |
| ACAGACGAAAATAGTAGCGG+TGG | - | chr3_1:79574111-79574130 | Msa0378740:three_prime_UTR | 45.0% | |
| GAAATGAGAAATCCCCTGCA+TGG | - | chr3_1:79574299-79574318 | Msa0378740:three_prime_UTR | 45.0% | |
| ACCTATCTTCTTCCATGCAG+GGG | + | chr3_1:79574314-79574333 | None:intergenic | 45.0% | |
| GTACCTATCTTCTTCCATGC+AGG | + | chr3_1:79574316-79574335 | None:intergenic | 45.0% | |
| ! | TGAGCCCATTTAGAACCTTC+CGG | + | chr3_1:79574381-79574400 | None:intergenic | 45.0% |
| TTTGTAGCGCGCATCTGTTT+CGG | - | chr3_1:79574552-79574571 | Msa0378740:intron | 45.0% | |
| ACCCATGCTGCTACAATTGT+CGG | + | chr3_1:79574690-79574709 | None:intergenic | 45.0% | |
| CGGACATAACACGTCATTCT+TGG | - | chr3_1:79575006-79575025 | Msa0378740:intron | 45.0% | |
| AGTGGAGATCAGATGCATGA+AGG | + | chr3_1:79575116-79575135 | None:intergenic | 45.0% | |
| TGAAGCGATCATCAAGCTTG+TGG | - | chr3_1:79575286-79575305 | Msa0378740:CDS | 45.0% | |
| GAAGCGATCATCAAGCTTGT+GGG | - | chr3_1:79575287-79575306 | Msa0378740:CDS | 45.0% | |
| AAGCGATCATCAAGCTTGTG+GGG | - | chr3_1:79575288-79575307 | Msa0378740:CDS | 45.0% | |
| !! | AAAGAGATTGGCTTCCATCG+TGG | - | chr3_1:79575592-79575611 | Msa0378740:intron | 45.0% |
| CGGACATAACACGTCATTCT+TGG | + | chr3_1:79575006-79575025 | None:intergenic | 45.0% | |
| ACCTTGTAGGAGGTTGTGTA+CGG | - | chr3_1:79575859-79575878 | Msa0378740:intron | 45.0% | |
| CCATGTGAACATGGCATATG+GGG | + | chr3_1:79576196-79576215 | None:intergenic | 45.0% | |
| TAACACTGCTAGAGGCAAGA+AGG | - | chr3_1:79576388-79576407 | Msa0378740:CDS | 45.0% | |
| AACACTGCTAGAGGCAAGAA+GGG | - | chr3_1:79576389-79576408 | Msa0378740:CDS | 45.0% | |
| GTTGTGAGAAGGACCTTCTT+CGG | - | chr3_1:79576447-79576466 | Msa0378740:intron | 45.0% | |
| GGGTAGTGTAACAGTTTGTG+CGG | - | chr3_1:79576506-79576525 | Msa0378740:intron | 45.0% | |
| TTGTGCGGTTGTCTTCTTTG+TGG | - | chr3_1:79576521-79576540 | Msa0378740:intron | 45.0% | |
| TCTTTCCCAGCAGAATTGTG+AGG | - | chr3_1:79576726-79576745 | Msa0378740:intron | 45.0% | |
| CTTTCCCAGCAGAATTGTGA+GGG | - | chr3_1:79576727-79576746 | Msa0378740:intron | 45.0% | |
| GTAGAATGCGAGCTGAAGAA+AGG | + | chr3_1:79576941-79576960 | None:intergenic | 45.0% | |
| GTTCTGGTGAAGCTTCTTTG+CGG | - | chr3_1:79577188-79577207 | Msa0378740:intron | 45.0% | |
| !!! | GCTGCTTATTTTGCTCACCA+TGG | - | chr3_1:79577328-79577347 | Msa0378740:intron | 45.0% |
| TTGCTCACCATGGATTTCGA+AGG | - | chr3_1:79577338-79577357 | Msa0378740:intron | 45.0% | |
| TCACCATGGATTTCGAAGGA+GGG | - | chr3_1:79577342-79577361 | Msa0378740:intron | 45.0% | |
| GATTTCGAAGGAGGGACAAA+AGG | - | chr3_1:79577350-79577369 | Msa0378740:intron | 45.0% | |
| GTGGTAACCTCACTCTTTCA+CGG | - | chr3_1:79577392-79577411 | Msa0378740:intron | 45.0% | |
| GTAAACTCCGTGAAAGAGTG+AGG | + | chr3_1:79577402-79577421 | None:intergenic | 45.0% | |
| CTCTTTCACGGAGTTTACAC+CGG | - | chr3_1:79577404-79577423 | Msa0378740:intron | 45.0% | |
| !! | ACAAGCTACTGGGTTAGCTT+AGG | + | chr3_1:79577466-79577485 | None:intergenic | 45.0% |
| AGATCGTCCAAGTAGTGAGA+TGG | - | chr3_1:79577843-79577862 | Msa0378740:intron | 45.0% | |
| GATCGTCCAAGTAGTGAGAT+GGG | - | chr3_1:79577844-79577863 | Msa0378740:intron | 45.0% | |
| ATCGTCCAAGTAGTGAGATG+GGG | - | chr3_1:79577845-79577864 | Msa0378740:intron | 45.0% | |
| GTCCATGTTATGGCAGCTTA+TGG | - | chr3_1:79578063-79578082 | Msa0378740:CDS | 45.0% | |
| ! | CTTTGAAGATCACGTCAGTG+TGG | - | chr3_1:79578231-79578250 | Msa0378740:intron | 45.0% |
| CACGTCAGTGTGGTATAAGA+TGG | - | chr3_1:79578241-79578260 | Msa0378740:CDS | 45.0% | |
| CCTCAGAAACAAAGGGAGAA+AGG | + | chr3_1:79578668-79578687 | None:intergenic | 45.0% | |
| !! | CCTTTCTCCCTTTGTTTCTG+AGG | - | chr3_1:79578665-79578684 | Msa0378740:intron | 45.0% |
| ! | TCTCAGTTTTCGTCATTGGC+AGG | - | chr3_1:79578892-79578911 | Msa0378740:intron | 45.0% |
| !! | AAGCATTGAGTGATCGACCA+AGG | - | chr3_1:79579084-79579103 | Msa0378740:intron | 45.0% |
| ! | AGCATTGAGTGATCGACCAA+GGG | - | chr3_1:79579085-79579104 | Msa0378740:intron | 45.0% |
| TTGGAAGCAGTGAACATAGC+AGG | - | chr3_1:79579161-79579180 | Msa0378740:intron | 45.0% | |
| TGGAAGCAGTGAACATAGCA+GGG | - | chr3_1:79579162-79579181 | Msa0378740:intron | 45.0% | |
| GCCTTTGCATTCATACCAGA+AGG | + | chr3_1:79579233-79579252 | None:intergenic | 45.0% | |
| !! | AATGCAAAGGCATTGGAAGC+TGG | - | chr3_1:79579242-79579261 | Msa0378740:intron | 45.0% |
| !! | ATGCAAAGGCATTGGAAGCT+GGG | - | chr3_1:79579243-79579262 | Msa0378740:intron | 45.0% |
| TGCTCACTAGGTCAGAATGA+GGG | + | chr3_1:79579361-79579380 | None:intergenic | 45.0% | |
| ATGCTCACTAGGTCAGAATG+AGG | + | chr3_1:79579362-79579381 | None:intergenic | 45.0% | |
| TTCTCGTGCAAACCATGTAC+TGG | + | chr3_1:79579631-79579650 | None:intergenic | 45.0% | |
| ! | AGTGCCATTGGAGAGGAAAA+TGG | + | chr3_1:79579701-79579720 | None:intergenic | 45.0% |
| TCCAATGGCACTCACATTGA+TGG | - | chr3_1:79579709-79579728 | Msa0378740:intron | 45.0% | |
| CCAATGGCACTCACATTGAT+GGG | - | chr3_1:79579710-79579729 | Msa0378740:intron | 45.0% | |
| CGAATGTGTGAAAAGGAGTG+CGG | - | chr3_1:79579945-79579964 | Msa0378740:intron | 45.0% | |
| GATCCTGATCTTGGTGAAGT+GGG | + | chr3_1:79580083-79580102 | None:intergenic | 45.0% | |
| TGATCCTGATCTTGGTGAAG+TGG | + | chr3_1:79580084-79580103 | None:intergenic | 45.0% | |
| ACTTCACCAAGATCAGGATC+AGG | - | chr3_1:79580083-79580102 | Msa0378740:CDS | 45.0% | |
| TCAGGCATTAAAGAGCAGCT+CGG | - | chr3_1:79580101-79580120 | Msa0378740:CDS | 45.0% | |
| CTGTAAGTACCTCTCAGAGT+TGG | + | chr3_1:79580252-79580271 | None:intergenic | 45.0% | |
| !! | CAACTCTGAGAGGTACTTAC+AGG | - | chr3_1:79580250-79580269 | Msa0378740:intron | 45.0% |
| CTCACATGCTACATAGCCAA+CGG | - | chr3_1:79580347-79580366 | Msa0378740:CDS | 45.0% | |
| ACATAGCCAACGGATAGTGT+AGG | - | chr3_1:79580357-79580376 | Msa0378740:CDS | 45.0% | |
| GATCTTCCTACACTATCCGT+TGG | + | chr3_1:79580366-79580385 | None:intergenic | 45.0% | |
| AAAGTGACCCCATCCCAAAA+AGG | - | chr3_1:79580398-79580417 | Msa0378740:intron | 45.0% | |
| ! | TTTGAAGCCAGTGACCGTCA+TGG | + | chr3_1:79573912-79573931 | None:intergenic | 50.0% |
| AGTGGGACGAAGATGAAGAG+TGG | + | chr3_1:79573948-79573967 | None:intergenic | 50.0% | |
| GAAAATAGTAGCGGTGGCTG+TGG | - | chr3_1:79574117-79574136 | Msa0378740:three_prime_UTR | 50.0% | |
| GGCGTCTCAATTCGTGAAGA+AGG | - | chr3_1:79574138-79574157 | Msa0378740:three_prime_UTR | 50.0% | |
| TCCCCTGCATGGAAGAAGAT+AGG | - | chr3_1:79574310-79574329 | Msa0378740:exon | 50.0% | |
| ! | ATTTAGAACCTTCCGGGCAG+CGG | + | chr3_1:79574374-79574393 | None:intergenic | 50.0% |
| !! | CTGCCCGGAAGGTTCTAAAT+GGG | - | chr3_1:79574374-79574393 | Msa0378740:CDS | 50.0% |
| ! | GAGCCCATTTAGAACCTTCC+GGG | + | chr3_1:79574380-79574399 | None:intergenic | 50.0% |
| TTGTAGCGCGCATCTGTTTC+GGG | - | chr3_1:79574553-79574572 | Msa0378740:intron | 50.0% | |
| ATGCTGCTACAATTGTCGGG+GGG | + | chr3_1:79574686-79574705 | None:intergenic | 50.0% | |
| CATGCTGCTACAATTGTCGG+GGG | + | chr3_1:79574687-79574706 | None:intergenic | 50.0% | |
| CCATGCTGCTACAATTGTCG+GGG | + | chr3_1:79574688-79574707 | None:intergenic | 50.0% | |
| CCCATGCTGCTACAATTGTC+GGG | + | chr3_1:79574689-79574708 | None:intergenic | 50.0% | |
| CCCGACAATTGTAGCAGCAT+GGG | - | chr3_1:79574686-79574705 | Msa0378740:intron | 50.0% | |
| CATGAAGGAGAGAGAGAGCA+AGG | + | chr3_1:79575101-79575120 | None:intergenic | 50.0% | |
| GGAGCTTAAACTTCTGGCAG+TGG | + | chr3_1:79575134-79575153 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGATATTGGGTCG+TGG | - | chr3_1:79575562-79575581 | Msa0378740:intron | 50.0% |
| TGGTGATATTGGGTCGTGGT+TGG | - | chr3_1:79575566-79575585 | Msa0378740:intron | 50.0% | |
| GGTGATATTGGGTCGTGGTT+GGG | - | chr3_1:79575567-79575586 | Msa0378740:intron | 50.0% | |
| CGTGGTTGGGTGAAAGAGAT+TGG | - | chr3_1:79575580-79575599 | Msa0378740:intron | 50.0% | |
| AATGCACAACACAGCCACGA+TGG | + | chr3_1:79575609-79575628 | None:intergenic | 50.0% | |
| CCTTGTAGGAGGTTGTGTAC+GGG | - | chr3_1:79575860-79575879 | Msa0378740:intron | 50.0% | |
| CCCCATATGCCATGTTCACA+TGG | - | chr3_1:79576193-79576212 | Msa0378740:intron | 50.0% | |
| !! | TTTTCAGGGAAGGCTCCTGA+TGG | - | chr3_1:79577141-79577160 | Msa0378740:intron | 50.0% |
| CTCACCATGGATTTCGAAGG+AGG | - | chr3_1:79577341-79577360 | Msa0378740:intron | 50.0% | |
| TGTCCCTCCTTCGAAATCCA+TGG | + | chr3_1:79577348-79577367 | None:intergenic | 50.0% | |
| GTACGCACTACATGCAGCAT+AGG | - | chr3_1:79577651-79577670 | Msa0378740:CDS | 50.0% | |
| CAAGTAGTGAGATGGGGTGT+CGG | - | chr3_1:79577851-79577870 | Msa0378740:intron | 50.0% | |
| ! | AAGTAGTGAGATGGGGTGTC+GGG | - | chr3_1:79577852-79577871 | Msa0378740:intron | 50.0% |
| GCTCCAAACCGTCCATGTTA+TGG | - | chr3_1:79578053-79578072 | Msa0378740:CDS | 50.0% | |
| CTGCCATAACATGGACGGTT+TGG | + | chr3_1:79578059-79578078 | None:intergenic | 50.0% | |
| CTAAATGCAGCAACCACCAG+GGG | + | chr3_1:79579113-79579132 | None:intergenic | 50.0% | |
| GCTAAATGCAGCAACCACCA+GGG | + | chr3_1:79579114-79579133 | None:intergenic | 50.0% | |
| AGCCTTGCAGTCCATAATGG+TGG | - | chr3_1:79579131-79579150 | Msa0378740:intron | 50.0% | |
| GCCTTGCAGTCCATAATGGT+GGG | - | chr3_1:79579132-79579151 | Msa0378740:intron | 50.0% | |
| ! | TCCCACCATTATGGACTGCA+AGG | + | chr3_1:79579136-79579155 | None:intergenic | 50.0% |
| !! | TGCAAAGGCATTGGAAGCTG+GGG | - | chr3_1:79579244-79579263 | Msa0378740:intron | 50.0% |
| ATGAGGGGCTTGAGGATAGT+CGG | + | chr3_1:79579345-79579364 | None:intergenic | 50.0% | |
| GCTCACTAGGTCAGAATGAG+GGG | + | chr3_1:79579360-79579379 | None:intergenic | 50.0% | |
| TCTTGCTAACAAGTGCCCTG+AGG | - | chr3_1:79579411-79579430 | Msa0378740:intron | 50.0% | |
| CTTGCTAACAAGTGCCCTGA+GGG | - | chr3_1:79579412-79579431 | Msa0378740:intron | 50.0% | |
| !!! | TGCCCTGAGGGCACTTTTTA+AGG | - | chr3_1:79579424-79579443 | Msa0378740:intron | 50.0% |
| ! | CAATGTGAGTGCCATTGGAG+AGG | + | chr3_1:79579708-79579727 | None:intergenic | 50.0% |
| CCCATCAATGTGAGTGCCAT+TGG | + | chr3_1:79579713-79579732 | None:intergenic | 50.0% | |
| ! | GGGAGCGTGAAAATCACGAT+TGG | - | chr3_1:79579750-79579769 | Msa0378740:intron | 50.0% |
| GTTCCCACTTCACCAAGATC+AGG | - | chr3_1:79580077-79580096 | Msa0378740:CDS | 50.0% | |
| AAAGAGCAGCTCGGTTTCAC+TGG | - | chr3_1:79580110-79580129 | Msa0378740:CDS | 50.0% | |
| AAGAGCAGCTCGGTTTCACT+GGG | - | chr3_1:79580111-79580130 | Msa0378740:CDS | 50.0% | |
| !! | TCACTGGGAGGCTAGTTTGA+AGG | - | chr3_1:79580126-79580145 | Msa0378740:CDS | 50.0% |
| GGTCGAATTCCAACTCTGAG+AGG | - | chr3_1:79580240-79580259 | Msa0378740:intron | 50.0% | |
| CATAGGGTTCGGGGTAAGAG+AGG | + | chr3_1:79573833-79573852 | None:intergenic | 55.0% | |
| TAGCTAGCGCATAGGGTTCG+GGG | + | chr3_1:79573842-79573861 | None:intergenic | 55.0% | |
| CTAGCTAGCGCATAGGGTTC+GGG | + | chr3_1:79573843-79573862 | None:intergenic | 55.0% | |
| GCTAGCTAGCGCATAGGGTT+CGG | + | chr3_1:79573844-79573863 | None:intergenic | 55.0% | |
| ACCCTATGCGCTAGCTAGCT+CGG | - | chr3_1:79573845-79573864 | Msa0378740:three_prime_UTR | 55.0% | |
| ACCGAGCTAGCTAGCGCATA+GGG | + | chr3_1:79573849-79573868 | None:intergenic | 55.0% | |
| ! | TTTAGAACCTTCCGGGCAGC+GGG | + | chr3_1:79574373-79574392 | None:intergenic | 55.0% |
| !! | GCTGCCCGGAAGGTTCTAAA+TGG | - | chr3_1:79574373-79574392 | Msa0378740:CDS | 55.0% |
| TGCTGCTACAATTGTCGGGG+GGG | + | chr3_1:79574685-79574704 | None:intergenic | 55.0% | |
| CCCCGACAATTGTAGCAGCA+TGG | - | chr3_1:79574685-79574704 | Msa0378740:intron | 55.0% | |
| GGAGGCGGAGCTTAAACTTC+TGG | + | chr3_1:79575140-79575159 | None:intergenic | 55.0% | |
| CCCGTACACAACCTCCTACA+AGG | + | chr3_1:79575863-79575882 | None:intergenic | 55.0% | |
| TGCTAGAGGCAAGAAGGGTG+TGG | - | chr3_1:79576394-79576413 | Msa0378740:CDS | 55.0% | |
| GTGAGAAGGACCTTCTTCGG+TGG | - | chr3_1:79576450-79576469 | Msa0378740:intron | 55.0% | |
| CGACACCCCATCTCACTACT+TGG | + | chr3_1:79577853-79577872 | None:intergenic | 55.0% | |
| GGCTAAATGCAGCAACCACC+AGG | + | chr3_1:79579115-79579134 | None:intergenic | 55.0% | |
| !! | AGGCATTGGAAGCTGGGGTT+AGG | - | chr3_1:79579249-79579268 | Msa0378740:intron | 55.0% |
| ! | GGCATTGGAAGCTGGGGTTA+GGG | - | chr3_1:79579250-79579269 | Msa0378740:intron | 55.0% |
| AGGTCAGAATGAGGGGCTTG+AGG | + | chr3_1:79579353-79579372 | None:intergenic | 55.0% | |
| !! | GGAAGGGTACTACTCTGCTC+TGG | - | chr3_1:79580304-79580323 | Msa0378740:intron | 55.0% |
| CTACTCTGCTCTGGCATCCA+AGG | - | chr3_1:79580313-79580332 | Msa0378740:CDS | 55.0% | |
| CACCGAGCTAGCTAGCGCAT+AGG | + | chr3_1:79573850-79573869 | None:intergenic | 60.0% | |
| GCTACAATTGTCGGGGGGGA+TGG | + | chr3_1:79574681-79574700 | None:intergenic | 60.0% | |
| CAAGCTTGTGGGGAGCAGTG+AGG | - | chr3_1:79575298-79575317 | Msa0378740:CDS | 60.0% | |
| !! | TGAGATGGGGTGTCGGGCTA+TGG | - | chr3_1:79577858-79577877 | Msa0378740:intron | 60.0% |
| TGATCGACCAAGGGATCCCC+TGG | - | chr3_1:79579094-79579113 | Msa0378740:intron | 60.0% | |
| AGCAGCTCGGTTTCACTGGG+AGG | - | chr3_1:79580114-79580133 | Msa0378740:CDS | 60.0% | |
| !! | GGTCGGTGATGAGCACCGAG+AGG | + | chr3_1:79575213-79575232 | None:intergenic | 65.0% |
| GCTTGTGGGGAGCAGTGAGG+CGG | - | chr3_1:79575301-79575320 | Msa0378740:CDS | 65.0% | |
| TCGACCAAGGGATCCCCTGG+TGG | - | chr3_1:79579097-79579116 | Msa0378740:intron | 65.0% | |
| GCAACCACCAGGGGATCCCT+TGG | + | chr3_1:79579104-79579123 | None:intergenic | 65.0% | |
| CGTCCATTGGACCCGCTGCC+CGG | - | chr3_1:79574359-79574378 | Msa0378740:CDS | 70.0% | |
| CTTCCGGGCAGCGGGTCCAA+TGG | + | chr3_1:79574365-79574384 | None:intergenic | 70.0% | |
| CATTGGACCCGCTGCCCGGA+AGG | - | chr3_1:79574363-79574382 | Msa0378740:CDS | 70.0% | |
| !! | TGGGGTGTCGGGCTATGGCG+AGG | - | chr3_1:79577863-79577882 | Msa0378740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79573829 | 79580639 | 79573829 | ID=Msa0378740;Name=Msa0378740 |
| chr3_1 | mRNA | 79573829 | 79580639 | 79573829 | ID=Msa0378740-mRNA-1;Parent=Msa0378740;Name=Msa0378740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=82|1|1|1|1|1|14|499|535 |
| chr3_1 | exon | 79573829 | 79574567 | 79573829 | ID=Msa0378740-mRNA-1:exon:19662;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79575095 | 79575407 | 79575095 | ID=Msa0378740-mRNA-1:exon:19661;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79576384 | 79576445 | 79576384 | ID=Msa0378740-mRNA-1:exon:19660;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79577081 | 79577140 | 79577081 | ID=Msa0378740-mRNA-1:exon:19659;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79577213 | 79577320 | 79577213 | ID=Msa0378740-mRNA-1:exon:19658;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79577410 | 79577519 | 79577410 | ID=Msa0378740-mRNA-1:exon:19657;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79577644 | 79577689 | 79577644 | ID=Msa0378740-mRNA-1:exon:19656;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79577781 | 79577853 | 79577781 | ID=Msa0378740-mRNA-1:exon:19655;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79577961 | 79578091 | 79577961 | ID=Msa0378740-mRNA-1:exon:19654;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79578236 | 79578319 | 79578236 | ID=Msa0378740-mRNA-1:exon:19653;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79578524 | 79578621 | 79578524 | ID=Msa0378740-mRNA-1:exon:19652;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79580059 | 79580169 | 79580059 | ID=Msa0378740-mRNA-1:exon:19651;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79580309 | 79580402 | 79580309 | ID=Msa0378740-mRNA-1:exon:19650;Parent=Msa0378740-mRNA-1 |
| chr3_1 | exon | 79580480 | 79580639 | 79580480 | ID=Msa0378740-mRNA-1:exon:19649;Parent=Msa0378740-mRNA-1 |
| chr3_1 | five_prime_UTR | 79580558 | 79580639 | 79580558 | ID=Msa0378740-mRNA-1:five_prime_utr;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79580480 | 79580557 | 79580480 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79580309 | 79580402 | 79580309 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79580059 | 79580169 | 79580059 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79578524 | 79578621 | 79578524 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79578236 | 79578319 | 79578236 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79577961 | 79578091 | 79577961 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79577781 | 79577853 | 79577781 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79577644 | 79577689 | 79577644 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79577410 | 79577519 | 79577410 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79577213 | 79577320 | 79577213 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79577081 | 79577140 | 79577081 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79576384 | 79576445 | 79576384 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79575095 | 79575407 | 79575095 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | CDS | 79574328 | 79574567 | 79574328 | ID=Msa0378740-mRNA-1:cds;Parent=Msa0378740-mRNA-1 |
| chr3_1 | three_prime_UTR | 79573829 | 79574327 | 79573829 | ID=Msa0378740-mRNA-1:three_prime_utr;Parent=Msa0378740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
