Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474750 | XP_024635981.1 | 97.383 | 535 | 12 | 1 | 1 | 535 | 1 | 533 | 0.0 | 1073 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474750 | sp|P0ABF1|PCNB_ECOLI | 36.364 | 264 | 158 | 2 | 63 | 319 | 27 | 287 | 8.80e-42 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474750 | A0A396J139 | 97.383 | 535 | 12 | 1 | 1 | 535 | 1 | 533 | 0.0 | 1073 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0378740 | Msa0474750 | 0.862410 | 5.169644e-64 | -8.615850e-47 |
| Msa0474750 | Msa0620110 | 0.804372 | 2.229336e-49 | -8.615850e-47 |
| Msa0474750 | Msa0706800 | 0.855016 | 8.371033e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474750 | MtrunA17_Chr3g0131751 | 97.383 | 535 | 12 | 1 | 1 | 535 | 1 | 533 | 0.0 | 1073 |
| Msa0474750 | MtrunA17_Chr8g0385901 | 67.748 | 524 | 158 | 3 | 1 | 522 | 1 | 515 | 0.0 | 737 |
| Msa0474750 | MtrunA17_Chr5g0406751 | 38.793 | 464 | 265 | 9 | 65 | 515 | 59 | 516 | 8.20e-97 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474750 | AT5G23690.1 | 60.931 | 494 | 186 | 4 | 37 | 523 | 33 | 526 | 0.0 | 611 |
| Msa0474750 | AT3G48830.1 | 62.232 | 466 | 175 | 1 | 59 | 523 | 53 | 518 | 0.0 | 605 |
| Msa0474750 | AT1G28090.3 | 55.319 | 470 | 203 | 4 | 55 | 518 | 9 | 477 | 0.0 | 523 |
| Msa0474750 | AT1G28090.1 | 55.319 | 470 | 203 | 4 | 55 | 518 | 72 | 540 | 0.0 | 522 |
| Msa0474750 | AT1G28090.2 | 55.319 | 470 | 203 | 4 | 55 | 518 | 36 | 504 | 0.0 | 522 |
| Msa0474750 | AT1G28090.4 | 52.553 | 470 | 196 | 5 | 55 | 518 | 36 | 484 | 4.70e-167 | 483 |
| Msa0474750 | AT1G28090.5 | 63.309 | 278 | 100 | 2 | 55 | 331 | 72 | 348 | 1.85e-124 | 369 |
| Msa0474750 | AT2G17580.1 | 41.737 | 472 | 249 | 7 | 65 | 515 | 59 | 525 | 3.35e-109 | 343 |
Find 182 sgRNAs with CRISPR-Local
Find 458 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCGGGACTTTACAATTAA+TGG | 0.130521 | 3_3:-77690232 | Msa0474750:CDS |
| AGCCAAAAGCTTATCTAAAT+TGG | 0.169200 | 3_3:+77688684 | None:intergenic |
| AAACATTCGGTCTTCAGTTT+TGG | 0.198207 | 3_3:-77686292 | Msa0474750:three_prime_UTR |
| TTGCGGTTATTATGGAAATT+TGG | 0.215118 | 3_3:-77689512 | Msa0474750:CDS |
| TCCTGCAGATATTTCATTTC+GGG | 0.215372 | 3_3:-77689924 | Msa0474750:CDS |
| TACTTCCCCGGGGCCACTTT+TGG | 0.236220 | 3_3:+77686054 | None:intergenic |
| AAGCTTCTTTGCGGTTATTA+TGG | 0.238802 | 3_3:-77689520 | Msa0474750:CDS |
| GCTGCCCGGAAGGTTCTAAA+TGG | 0.244509 | 3_3:-77692344 | Msa0474750:CDS |
| ATAAATTATATGCTAGCTTA+TGG | 0.272967 | 3_3:-77689551 | Msa0474750:CDS |
| CCAACAAATTCCCACCATTA+TGG | 0.275648 | 3_3:+77687575 | None:intergenic |
| CCTGAATTGTTAGATCCTTC+TGG | 0.298363 | 3_3:-77687502 | Msa0474750:CDS |
| TAATCTTTGAGAGATTAATT+TGG | 0.300495 | 3_3:-77686099 | Msa0474750:three_prime_UTR |
| CTTAGGATTTAGTATATCTA+AGG | 0.307307 | 3_3:-77689734 | Msa0474750:CDS |
| GTCTTTACGTACAATTCTAA+TGG | 0.317581 | 3_3:+77686807 | None:intergenic |
| CAAAAGGACCAATATGCTTT+TGG | 0.320964 | 3_3:-77689351 | Msa0474750:intron |
| CTCCAATTTAGATAAGCTTT+TGG | 0.326776 | 3_3:-77688686 | Msa0474750:CDS |
| CTAGCTAGCGCATAGGGTTC+GGG | 0.327938 | 3_3:+77692877 | None:intergenic |
| AGGTCCTTCTCACAACTATT+AGG | 0.332171 | 3_3:+77690277 | None:intergenic |
| GCTAGCTAGCGCATAGGGTT+CGG | 0.344748 | 3_3:+77692876 | None:intergenic |
| ATTGTGAATTCCAAGCTCTT+TGG | 0.345189 | 3_3:+77692382 | None:intergenic |
| TATATGCTAGCTTATGGTTC+TGG | 0.348087 | 3_3:-77689545 | Msa0474750:CDS |
| ACCACTTACCAAAAGCATAT+TGG | 0.349998 | 3_3:+77689343 | None:intergenic |
| ATCCTGCAGATATTTCATTT+CGG | 0.351685 | 3_3:-77689925 | Msa0474750:CDS |
| CAACTCTGAGAGGTACTTAC+AGG | 0.351889 | 3_3:-77686467 | Msa0474750:three_prime_UTR |
| CCAGAAGGATCTAACAATTC+AGG | 0.353886 | 3_3:+77687502 | None:intergenic |
| TCAGGAAATCTCATATCATT+TGG | 0.354488 | 3_3:+77687520 | None:intergenic |
| GCTCCAAACCGTCCATGTTA+TGG | 0.355718 | 3_3:-77688664 | Msa0474750:CDS |
| AGGCATTGGAAGCTGGGGTT+AGG | 0.357700 | 3_3:-77687468 | Msa0474750:CDS |
| ACCGGGACTTTACAATTAAT+GGG | 0.362333 | 3_3:-77690231 | Msa0474750:intron |
| AGATATACTTCTTCCCTTCC+AGG | 0.367335 | 3_3:-77689483 | Msa0474750:intron |
| GTCCATGTTATGGCAGCTTA+TGG | 0.367771 | 3_3:-77688654 | Msa0474750:intron |
| TGAGCCCATTTAGAACCTTC+CGG | 0.369841 | 3_3:+77692339 | None:intergenic |
| TTCAGTATTAAGACTTGATA+AGG | 0.370310 | 3_3:-77689680 | Msa0474750:intron |
| TCATATACAACTCTTTCATA+TGG | 0.376207 | 3_3:+77690089 | None:intergenic |
| GAGCCCATTTAGAACCTTCC+GGG | 0.384290 | 3_3:+77692340 | None:intergenic |
| TTTGGACGGAGTAATTAGTA+TGG | 0.384848 | 3_3:+77686072 | None:intergenic |
| CTGCCATAACATGGACGGTT+TGG | 0.385526 | 3_3:+77688661 | None:intergenic |
| GTCTGATCATAATCAGATAT+TGG | 0.393261 | 3_3:-77686505 | Msa0474750:three_prime_UTR |
| TTCTAAATGGGCTCAAGAAA+AGG | 0.396116 | 3_3:-77692331 | Msa0474750:CDS |
| ATCCATGTGAACATGGCATA+TGG | 0.398011 | 3_3:+77690522 | None:intergenic |
| TTTAGCCTTGCAGTCCATAA+TGG | 0.400501 | 3_3:-77687589 | Msa0474750:CDS |
| ATGAAATAATCATTCTATCA+AGG | 0.404734 | 3_3:-77686534 | Msa0474750:three_prime_UTR |
| TTTCCTGGTGTAAGATAGTT+GGG | 0.406015 | 3_3:-77690555 | Msa0474750:CDS |
| AAAGAGCAGCTCGGTTTCAC+TGG | 0.407209 | 3_3:-77686607 | Msa0474750:CDS |
| TTGGTACCTTACGAAGATAT+TGG | 0.411502 | 3_3:+77692744 | None:intergenic |
| TTAATGCCTGATCCTGATCT+TGG | 0.411881 | 3_3:+77686628 | None:intergenic |
| TTGATTTCCATGACGGTCAC+TGG | 0.416859 | 3_3:-77692815 | Msa0474750:exon |
| GATTATGAGTCCTTAGCTAA+TGG | 0.417511 | 3_3:-77686714 | Msa0474750:CDS |
| AACAATTCTTCCACCGAAGA+AGG | 0.417639 | 3_3:+77690257 | None:intergenic |
| ATTAGAATTGCTGCTCGCTT+AGG | 0.418243 | 3_3:-77689751 | Msa0474750:CDS |
| TCACTGGGAGGCTAGTTTGA+AGG | 0.425989 | 3_3:-77686591 | Msa0474750:exon |
| GGAATTCACAATTCGTCCAT+TGG | 0.428677 | 3_3:-77692371 | Msa0474750:CDS |
| CGTCCATTGGACCCGCTGCC+CGG | 0.430040 | 3_3:-77692358 | Msa0474750:CDS |
| GTACCTATCTTCTTCCATGC+AGG | 0.430046 | 3_3:+77692404 | None:intergenic |
| GGCATTGGAAGCTGGGGTTA+GGG | 0.430693 | 3_3:-77687467 | Msa0474750:CDS |
| CCATAATGGTGGGAATTTGT+TGG | 0.434014 | 3_3:-77687575 | Msa0474750:CDS |
| AATGCAAAGGCATTGGAAGC+TGG | 0.434153 | 3_3:-77687475 | Msa0474750:CDS |
| GATCTTGCAGAGTCTATTAG+AGG | 0.435267 | 3_3:-77687445 | Msa0474750:CDS |
| GGTGGAAGAATTGTTTAAAC+CGG | 0.436234 | 3_3:-77690249 | Msa0474750:CDS |
| GCATATAATTTATTTCCATC+AGG | 0.442576 | 3_3:+77689561 | None:intergenic |
| TCTAAATGGGCTCAAGAAAA+GGG | 0.442755 | 3_3:-77692330 | Msa0474750:CDS |
| AAAGTGACCCCATCCCAAAA+AGG | 0.443322 | 3_3:-77686319 | Msa0474750:three_prime_UTR |
| TCCCCTGCATGGAAGAAGAT+AGG | 0.460559 | 3_3:-77692407 | Msa0474750:CDS |
| GTTATAATATCAAAGTCCTT+TGG | 0.463687 | 3_3:+77690814 | None:intergenic |
| GGATATGATGTATACCTTGT+AGG | 0.465194 | 3_3:-77690871 | Msa0474750:CDS |
| CATTGGACCCGCTGCCCGGA+AGG | 0.465838 | 3_3:-77692354 | Msa0474750:CDS |
| ACGAAGATATTGGAAGGGAG+TGG | 0.468199 | 3_3:+77692754 | None:intergenic |
| AATTCTGTAAATGATTGATA+TGG | 0.470430 | 3_3:-77686130 | Msa0474750:three_prime_UTR |
| ATTTAGAACCTTCCGGGCAG+CGG | 0.471795 | 3_3:+77692346 | None:intergenic |
| TTTAGAACCTTCCGGGCAGC+GGG | 0.474847 | 3_3:+77692347 | None:intergenic |
| ACCCATTAATTGTAAAGTCC+CGG | 0.476275 | 3_3:+77690230 | None:intergenic |
| TTGGAAGCAGTGAACATAGC+AGG | 0.476311 | 3_3:-77687556 | Msa0474750:CDS |
| TGTCCCTCCTTCGAAATCCA+TGG | 0.478188 | 3_3:+77689372 | None:intergenic |
| TCCATGTGAACATGGCATAT+GGG | 0.478630 | 3_3:+77690523 | None:intergenic |
| ATGCAAAGGCATTGGAAGCT+GGG | 0.478735 | 3_3:-77687474 | Msa0474750:CDS |
| GGCTAAATGCAGCAACCACC+AGG | 0.479197 | 3_3:+77687605 | None:intergenic |
| TACCTATCTTCTTCCATGCA+GGG | 0.484519 | 3_3:+77692405 | None:intergenic |
| AACTTCAGCTGAGCTAAAAG+AGG | 0.485480 | 3_3:-77690794 | Msa0474750:intron |
| AAGATAGGTACCAAAGAGCT+TGG | 0.492787 | 3_3:-77692392 | Msa0474750:CDS |
| TCTTTGAGAGATTAATTTGG+CGG | 0.497381 | 3_3:-77686096 | Msa0474750:three_prime_UTR |
| CTGCCCGGAAGGTTCTAAAT+GGG | 0.497838 | 3_3:-77692343 | Msa0474750:CDS |
| GATTTCGAAGGAGGGACAAA+AGG | 0.500873 | 3_3:-77689367 | Msa0474750:CDS |
| CTCACCATGGATTTCGAAGG+AGG | 0.506537 | 3_3:-77689376 | Msa0474750:CDS |
| GTTCTGGTGAAGCTTCTTTG+CGG | 0.510348 | 3_3:-77689529 | Msa0474750:CDS |
| GGAAGGGTACTACTCTGCTC+TGG | 0.510859 | 3_3:-77686413 | Msa0474750:three_prime_UTR |
| TGAAATAATCATTCTATCAA+GGG | 0.511197 | 3_3:-77686533 | Msa0474750:three_prime_UTR |
| ACCTATCTTCTTCCATGCAG+GGG | 0.511636 | 3_3:+77692406 | None:intergenic |
| CTACTCTGCTCTGGCATCCA+AGG | 0.511965 | 3_3:-77686404 | Msa0474750:three_prime_UTR |
| CTTCCGGGCAGCGGGTCCAA+TGG | 0.512342 | 3_3:+77692355 | None:intergenic |
| GTTGTGAGAAGGACCTTCTT+CGG | 0.513047 | 3_3:-77690270 | Msa0474750:CDS |
| ACCCTATGCGCTAGCTAGCT+CGG | 0.514241 | 3_3:-77692872 | Msa0474750:five_prime_UTR |
| ACCTTGTAGGAGGTTGTGTA+CGG | 0.515753 | 3_3:-77690858 | Msa0474750:CDS |
| TCCCGAAATGAAATATCTGC+AGG | 0.516995 | 3_3:+77689923 | None:intergenic |
| CTAATTACTCCGTCCAAAAG+TGG | 0.518089 | 3_3:-77686067 | Msa0474750:three_prime_UTR |
| CCCCATATGCCATGTTCACA+TGG | 0.518226 | 3_3:-77690524 | Msa0474750:CDS |
| GCAACCACCAGGGGATCCCT+TGG | 0.518539 | 3_3:+77687616 | None:intergenic |
| TCAATGCTTTATGCAATGCT+AGG | 0.520605 | 3_3:+77687647 | None:intergenic |
| AAGAGTTGTATATGATTACA+TGG | 0.523526 | 3_3:-77690081 | Msa0474750:CDS |
| TTGTATATCACCATTAGCTA+AGG | 0.524570 | 3_3:+77686704 | None:intergenic |
| CATATACAACTCTTTCATAT+GGG | 0.524973 | 3_3:+77690090 | None:intergenic |
| AGTGGGACGAAGATGAAGAG+TGG | 0.532758 | 3_3:+77692772 | None:intergenic |
| TGATCGACCAAGGGATCCCC+TGG | 0.532953 | 3_3:-77687623 | Msa0474750:CDS |
| GGCGTCTCAATTCGTGAAGA+AGG | 0.534341 | 3_3:-77692579 | Msa0474750:intron |
| GAAAATAGTAGCGGTGGCTG+TGG | 0.536926 | 3_3:-77692600 | Msa0474750:CDS |
| TAACACTGCTAGAGGCAAGA+AGG | 0.536969 | 3_3:-77690329 | Msa0474750:CDS |
| TGCTAGAGGCAAGAAGGGTG+TGG | 0.537319 | 3_3:-77690323 | Msa0474750:CDS |
| GTTCCCACTTCACCAAGATC+AGG | 0.539186 | 3_3:-77686640 | Msa0474750:CDS |
| CCCGTACACAACCTCCTACA+AGG | 0.541241 | 3_3:+77690857 | None:intergenic |
| CCATGTGAACATGGCATATG+GGG | 0.543366 | 3_3:+77690524 | None:intergenic |
| TACCATAAGCTGCCATAACA+TGG | 0.543963 | 3_3:+77688652 | None:intergenic |
| ACCGAGCTAGCTAGCGCATA+GGG | 0.544096 | 3_3:+77692871 | None:intergenic |
| ATGCTCACTAAGTCAGAATG+AGG | 0.546122 | 3_3:+77687358 | None:intergenic |
| AAGAGCAGCTCGGTTTCACT+GGG | 0.548338 | 3_3:-77686606 | Msa0474750:CDS |
| TGGTATGAATGCAAAGGCAT+TGG | 0.552008 | 3_3:-77687482 | Msa0474750:CDS |
| ACTTCACCAAGATCAGGATC+AGG | 0.556391 | 3_3:-77686634 | Msa0474750:CDS |
| AACACTGCTAGAGGCAAGAA+GGG | 0.556413 | 3_3:-77690328 | Msa0474750:CDS |
| TGATCCTGATCTTGGTGAAG+TGG | 0.556453 | 3_3:+77686636 | None:intergenic |
| TCCCTTCCAATATCTTCGTA+AGG | 0.557251 | 3_3:-77692750 | Msa0474750:intron |
| GCCTTTGCATTCATACCAGA+AGG | 0.560801 | 3_3:+77687487 | None:intergenic |
| GCCTTGCAGTCCATAATGGT+GGG | 0.560897 | 3_3:-77687585 | Msa0474750:CDS |
| TGTGAGTGAGTTAAATGCCT+TGG | 0.563724 | 3_3:+77686387 | None:intergenic |
| AAGTCAGAATGAGGGGCTTG+AGG | 0.565018 | 3_3:+77687367 | None:intergenic |
| ATTTCATTTCGGGAAGATTG+TGG | 0.567097 | 3_3:-77689914 | Msa0474750:intron |
| AAAATTAACATATACCTGGA+AGG | 0.570613 | 3_3:+77689469 | None:intergenic |
| TGGTATCATCCATGTGAACA+TGG | 0.572381 | 3_3:+77690515 | None:intergenic |
| GTGGAAGAATTGTTTAAACC+GGG | 0.573283 | 3_3:-77690248 | Msa0474750:CDS |
| CTGTAAGTACCTCTCAGAGT+TGG | 0.573745 | 3_3:+77686468 | None:intergenic |
| CCTTGTAGGAGGTTGTGTAC+GGG | 0.574482 | 3_3:-77690857 | Msa0474750:CDS |
| TGCTCACTAAGTCAGAATGA+GGG | 0.577488 | 3_3:+77687359 | None:intergenic |
| TACCTTACGAAGATATTGGA+AGG | 0.580587 | 3_3:+77692748 | None:intergenic |
| AGCCTTGCAGTCCATAATGG+TGG | 0.580771 | 3_3:-77687586 | Msa0474750:CDS |
| TAGCTAGCGCATAGGGTTCG+GGG | 0.581267 | 3_3:+77692878 | None:intergenic |
| TTGCTCACCATGGATTTCGA+AGG | 0.581317 | 3_3:-77689379 | Msa0474750:CDS |
| CAACTCTTTCATATGGGTCA+AGG | 0.582351 | 3_3:+77690096 | None:intergenic |
| TCCCACCATTATGGACTGCA+AGG | 0.582464 | 3_3:+77687584 | None:intergenic |
| CGAAGATATTGGAAGGGAGT+GGG | 0.585271 | 3_3:+77692755 | None:intergenic |
| GACGAAGATGAAGAGTGGAT+TGG | 0.585564 | 3_3:+77692777 | None:intergenic |
| GATCCTGATCTTGGTGAAGT+GGG | 0.585678 | 3_3:+77686637 | None:intergenic |
| ATGAGGGGCTTGAGGATAGT+CGG | 0.587201 | 3_3:+77687375 | None:intergenic |
| TCTGTAAATGATTGATATGG+TGG | 0.590744 | 3_3:-77686127 | Msa0474750:three_prime_UTR |
| GTTGTATATGATTACATGGG+AGG | 0.594473 | 3_3:-77690077 | Msa0474750:CDS |
| AAATTAACATATACCTGGAA+GGG | 0.595461 | 3_3:+77689470 | None:intergenic |
| TGCAAAGGCATTGGAAGCTG+GGG | 0.601578 | 3_3:-77687473 | Msa0474750:CDS |
| CACCGAGCTAGCTAGCGCAT+AGG | 0.604138 | 3_3:+77692870 | None:intergenic |
| TCCTTCTGGTATGAATGCAA+AGG | 0.604970 | 3_3:-77687488 | Msa0474750:CDS |
| ATTTAGTATATCTAAGGAGA+CGG | 0.606375 | 3_3:-77689728 | Msa0474750:CDS |
| GAAATGAGAAATCCCCTGCA+TGG | 0.611807 | 3_3:-77692418 | Msa0474750:CDS |
| CATGGATGATACCATTGTTG+AGG | 0.614021 | 3_3:-77690506 | Msa0474750:intron |
| AGCACCTAATAGTTGTGAGA+AGG | 0.616905 | 3_3:-77690281 | Msa0474750:CDS |
| AGCAGCTCGGTTTCACTGGG+AGG | 0.617904 | 3_3:-77686603 | Msa0474750:CDS |
| AGCTAGCGCATAGGGTTCGG+GGG | 0.618537 | 3_3:+77692879 | None:intergenic |
| CGAATGTGTGAAAAGGAGTG+CGG | 0.619268 | 3_3:-77686772 | Msa0474750:CDS |
| TTTGAAGCCAGTGACCGTCA+TGG | 0.619381 | 3_3:+77692808 | None:intergenic |
| TTTCCCAACTATCTTACACC+AGG | 0.619588 | 3_3:+77690552 | None:intergenic |
| GAAATAATCATTCTATCAAG+GGG | 0.621819 | 3_3:-77686532 | Msa0474750:three_prime_UTR |
| CATAATCAGATATTGGTGGA+AGG | 0.624709 | 3_3:-77686498 | Msa0474750:three_prime_UTR |
| TGGAAGCAGTGAACATAGCA+GGG | 0.626704 | 3_3:-77687555 | Msa0474750:CDS |
| AAATCTACCAACCTCAACAA+TGG | 0.627654 | 3_3:+77690495 | None:intergenic |
| AAGCATTGAGTGATCGACCA+AGG | 0.627843 | 3_3:-77687633 | Msa0474750:CDS |
| TATTCTAAAGCAAACACCAA+AGG | 0.629392 | 3_3:-77690830 | Msa0474750:CDS |
| GATCTTCCTACACTATCCGT+TGG | 0.630426 | 3_3:+77686354 | None:intergenic |
| AGAGTTGTATATGATTACAT+GGG | 0.632927 | 3_3:-77690080 | Msa0474750:CDS |
| CTAAATGGGCTCAAGAAAAG+GGG | 0.634501 | 3_3:-77692329 | Msa0474750:intron |
| GTGAGAAGGACCTTCTTCGG+TGG | 0.637166 | 3_3:-77690267 | Msa0474750:CDS |
| TATGATGTATACCTTGTAGG+AGG | 0.639841 | 3_3:-77690868 | Msa0474750:CDS |
| ATCTTGCAGAGTCTATTAGA+GGG | 0.640756 | 3_3:-77687444 | Msa0474750:CDS |
| AGCATTGAGTGATCGACCAA+GGG | 0.641314 | 3_3:-77687632 | Msa0474750:CDS |
| TCAGGCATTAAAGAGCAGCT+CGG | 0.643581 | 3_3:-77686616 | Msa0474750:CDS |
| GCTAAATGCAGCAACCACCA+GGG | 0.643905 | 3_3:+77687606 | None:intergenic |
| ACATAGCCAACGGATAGTGT+AGG | 0.644572 | 3_3:-77686360 | Msa0474750:three_prime_UTR |
| ACCTTACGAAGATATTGGAA+GGG | 0.645750 | 3_3:+77692749 | None:intergenic |
| ACAGACGAAAATAGTAGCGG+TGG | 0.648551 | 3_3:-77692606 | Msa0474750:CDS |
| GCTCACTAAGTCAGAATGAG+GGG | 0.649558 | 3_3:+77687360 | None:intergenic |
| TCACCATGGATTTCGAAGGA+GGG | 0.650319 | 3_3:-77689375 | Msa0474750:CDS |
| CTCACATGCTACATAGCCAA+CGG | 0.654604 | 3_3:-77686370 | Msa0474750:three_prime_UTR |
| TGATCATAATCAGATATTGG+TGG | 0.654621 | 3_3:-77686502 | Msa0474750:three_prime_UTR |
| CTAAATGCAGCAACCACCAG+GGG | 0.668263 | 3_3:+77687607 | None:intergenic |
| ATAAGCTGCCATAACATGGA+CGG | 0.679548 | 3_3:+77688656 | None:intergenic |
| GGTCGAATTCCAACTCTGAG+AGG | 0.689984 | 3_3:-77686477 | Msa0474750:three_prime_UTR |
| TCGACCAAGGGATCCCCTGG+TGG | 0.701999 | 3_3:-77687620 | Msa0474750:CDS |
| TGTGCAGAAATCTATCGTTG+CGG | 0.710752 | 3_3:-77692649 | Msa0474750:CDS |
| TCCACAGACGAAAATAGTAG+CGG | 0.712769 | 3_3:-77692609 | Msa0474750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGAAATTTTGAATT+GGG | - | chr3_3:77686466-77686485 | Msa0474750:three_prime_UTR | 10.0% |
| !!! | TTTTTTTATGTATATACTTT+GGG | - | chr3_3:77691629-77691648 | Msa0474750:intron | 10.0% |
| !!! | CATTTTTTGAAATTTTGAAT+TGG | - | chr3_3:77686465-77686484 | Msa0474750:three_prime_UTR | 15.0% |
| !!! | TTTTTTGTATTGTGTAATTA+TGG | - | chr3_3:77686489-77686508 | Msa0474750:three_prime_UTR | 15.0% |
| !!! | AATTGTTTTTGTTGTTTAAT+TGG | - | chr3_3:77686512-77686531 | Msa0474750:three_prime_UTR | 15.0% |
| !! | TTCTTTCTTTCTATATTATA+TGG | - | chr3_3:77686683-77686702 | Msa0474750:CDS | 15.0% |
| !! | TATATTATATGGATGATTAA+AGG | - | chr3_3:77686694-77686713 | Msa0474750:CDS | 15.0% |
| !!! | CAATTGAAAAGTTTAAATTT+TGG | + | chr3_3:77687008-77687027 | None:intergenic | 15.0% |
| !! | GAATAAATTCTCAAAATTAT+AGG | - | chr3_3:77687676-77687695 | Msa0474750:intron | 15.0% |
| !! | TACATAAAATATAAGAAATC+AGG | + | chr3_3:77689097-77689116 | None:intergenic | 15.0% |
| !!! | TATTTTTCTATTATCTTTTC+AGG | - | chr3_3:77689367-77689386 | Msa0474750:CDS | 15.0% |
| !!! | ATTTTTCTATTATCTTTTCA+GGG | - | chr3_3:77689368-77689387 | Msa0474750:CDS | 15.0% |
| !!! | CAAAATAATTTGTATTTCTT+GGG | - | chr3_3:77690166-77690185 | Msa0474750:intron | 15.0% |
| !! | ATGTTTATCATGTAAATAAA+AGG | + | chr3_3:77690370-77690389 | None:intergenic | 15.0% |
| !!! | TGATTATTTTTTTTAGTGAT+AGG | - | chr3_3:77690582-77690601 | Msa0474750:intron | 15.0% |
| !!! | ATTTCAGGTTTTTATTTTTT+TGG | - | chr3_3:77690744-77690763 | Msa0474750:intron | 15.0% |
| !!! | CTTTTTTTATGTATATACTT+TGG | - | chr3_3:77691628-77691647 | Msa0474750:intron | 15.0% |
| !!! | AAGAAATTTTATCTTGAAAA+TGG | + | chr3_3:77691765-77691784 | None:intergenic | 15.0% |
| !! | ATAATGAAATTAGGAAAGAA+GGG | + | chr3_3:77686273-77686292 | None:intergenic | 20.0% |
| !! | AATAATGAAATTAGGAAAGA+AGG | + | chr3_3:77686274-77686293 | None:intergenic | 20.0% |
| !! | ATGAAGTGAATAATGAAATT+AGG | + | chr3_3:77686282-77686301 | None:intergenic | 20.0% |
| !! | TGAACAAATTATCATGTAAA+TGG | + | chr3_3:77686724-77686743 | None:intergenic | 20.0% |
| !!! | TGATTTCAATCAATTCATTT+TGG | + | chr3_3:77686871-77686890 | None:intergenic | 20.0% |
| !! | TTATATAAACTTAGAAGTCT+TGG | + | chr3_3:77687119-77687138 | None:intergenic | 20.0% |
| !!! | TTTGAAATTAAATCATGCTA+TGG | - | chr3_3:77687594-77687613 | Msa0474750:CDS | 20.0% |
| !! | ATTGTATCTCAAAAATGTTA+TGG | + | chr3_3:77687634-77687653 | None:intergenic | 20.0% |
| !! | TCAAAATTATAGGAGTAAAT+TGG | - | chr3_3:77687686-77687705 | Msa0474750:intron | 20.0% |
| !!! | ACTTCAAAGAATTTTAGATA+TGG | - | chr3_3:77688492-77688511 | Msa0474750:intron | 20.0% |
| !! | GGAAAGAAATATAAGAAAAA+CGG | + | chr3_3:77688954-77688973 | None:intergenic | 20.0% |
| !!! | ACTGAATTTTCTGTATAAAT+AGG | - | chr3_3:77688998-77689017 | Msa0474750:intron | 20.0% |
| !! | AATAGAAAAATAATTCATCC+AGG | + | chr3_3:77689359-77689378 | None:intergenic | 20.0% |
| !!! | ATAAATTATATGCTAGCTTA+TGG | - | chr3_3:77689407-77689426 | Msa0474750:intron | 20.0% |
| !! | ATAAACCACATAAAATTGAA+AGG | + | chr3_3:77690132-77690151 | None:intergenic | 20.0% |
| !!! | GCAAAATAATTTGTATTTCT+TGG | - | chr3_3:77690165-77690184 | Msa0474750:intron | 20.0% |
| !! | TTTATCATGTAAATAAAAGG+AGG | + | chr3_3:77690367-77690386 | None:intergenic | 20.0% |
| !!! | ATTTATAACCCTTTTTGTTT+TGG | - | chr3_3:77690524-77690543 | Msa0474750:CDS | 20.0% |
| !! | TTCTTAATCCAAAACAAAAA+GGG | + | chr3_3:77690535-77690554 | None:intergenic | 20.0% |
| !! | TTTCTTAATCCAAAACAAAA+AGG | + | chr3_3:77690536-77690555 | None:intergenic | 20.0% |
| !! | TTTCGTTATAATCAAATTTC+AGG | - | chr3_3:77690729-77690748 | Msa0474750:intron | 20.0% |
| !!! | GTATAATTATCTGAAACAAA+TGG | - | chr3_3:77690866-77690885 | Msa0474750:CDS | 20.0% |
| !! | TGCAATAAACTAATATCAAA+AGG | + | chr3_3:77691040-77691059 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAGGATACAAAAA+TGG | - | chr3_3:77691677-77691696 | Msa0474750:intron | 20.0% |
| !! | GAAATATTCATACATTAACA+AGG | + | chr3_3:77692084-77692103 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGTCAATTTGAC+AGG | - | chr3_3:77692120-77692139 | Msa0474750:intron | 20.0% |
| !! | ATGAAATAATCATTCTATCA+AGG | - | chr3_3:77692424-77692443 | Msa0474750:intron | 20.0% |
| !! | TGAAATAATCATTCTATCAA+GGG | - | chr3_3:77692425-77692444 | Msa0474750:intron | 20.0% |
| !!! | TCTAATAATTTTGTATCTTC+TGG | - | chr3_3:77692785-77692804 | Msa0474750:CDS | 20.0% |
| !!! | CTAATAATTTTGTATCTTCT+GGG | - | chr3_3:77692786-77692805 | Msa0474750:CDS | 20.0% |
| !!! | TAATAATTTTGTATCTTCTG+GGG | - | chr3_3:77692787-77692806 | Msa0474750:CDS | 20.0% |
| !! | AATTCTGTAAATGATTGATA+TGG | - | chr3_3:77692828-77692847 | Msa0474750:exon | 20.0% |
| !!! | TAATCTTTGAGAGATTAATT+TGG | - | chr3_3:77692859-77692878 | Msa0474750:five_prime_UTR | 20.0% |
| ! | TTCATTATTCACTTCATTCA+AGG | - | chr3_3:77686285-77686304 | Msa0474750:three_prime_UTR | 25.0% |
| !!! | TTTTGTTGTTTAATTGGTGA+AGG | - | chr3_3:77686518-77686537 | Msa0474750:three_prime_UTR | 25.0% |
| !! | TTTTCAATTGCATTATCATC+TGG | - | chr3_3:77687018-77687037 | Msa0474750:intron | 25.0% |
| ! | ATTACAGTAATGATGTAAGA+TGG | - | chr3_3:77687193-77687212 | Msa0474750:intron | 25.0% |
| ! | ATTATAGAGAAATTCTTGCA+TGG | - | chr3_3:77687221-77687240 | Msa0474750:intron | 25.0% |
| !! | CTTATTCTTTTCCAAATTGT+TGG | + | chr3_3:77687491-77687510 | None:intergenic | 25.0% |
| ! | GAAAAGAATAAGAACAACTA+TGG | - | chr3_3:77687499-77687518 | Msa0474750:CDS | 25.0% |
| ! | GATACAATTGAATAGCTAAT+AGG | - | chr3_3:77687646-77687665 | Msa0474750:CDS | 25.0% |
| !!! | ACAATTTTAACAGAAGACAA+TGG | + | chr3_3:77687766-77687785 | None:intergenic | 25.0% |
| ! | CAATTTCTTGACATTTCAAA+AGG | + | chr3_3:77688051-77688070 | None:intergenic | 25.0% |
| ! | GTTATAATATCAAAGTCCTT+TGG | + | chr3_3:77688147-77688166 | None:intergenic | 25.0% |
| ! | TCATTTGGATTTGCATAAAA+GGG | - | chr3_3:77688322-77688341 | Msa0474750:intron | 25.0% |
| ! | AAACAGCAATACAAGAAAAA+CGG | + | chr3_3:77688567-77688586 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTATTGCTGTTTA+TGG | - | chr3_3:77688568-77688587 | Msa0474750:intron | 25.0% |
| ! | CATAAGTACAAAATAATGTG+TGG | + | chr3_3:77688809-77688828 | None:intergenic | 25.0% |
| ! | CATATACAACTCTTTCATAT+GGG | + | chr3_3:77688871-77688890 | None:intergenic | 25.0% |
| ! | TCATATACAACTCTTTCATA+TGG | + | chr3_3:77688872-77688891 | None:intergenic | 25.0% |
| ! | AAGAGTTGTATATGATTACA+TGG | - | chr3_3:77688877-77688896 | Msa0474750:intron | 25.0% |
| ! | AGAGTTGTATATGATTACAT+GGG | - | chr3_3:77688878-77688897 | Msa0474750:intron | 25.0% |
| !! | TTATGTAGTGTAAACCATTT+TGG | - | chr3_3:77689110-77689129 | Msa0474750:intron | 25.0% |
| ! | CTTAGGATTTAGTATATCTA+AGG | - | chr3_3:77689224-77689243 | Msa0474750:intron | 25.0% |
| ! | ATTTAGTATATCTAAGGAGA+CGG | - | chr3_3:77689230-77689249 | Msa0474750:intron | 25.0% |
| ! | TTCAGTATTAAGACTTGATA+AGG | - | chr3_3:77689278-77689297 | Msa0474750:intron | 25.0% |
| ! | GCATATAATTTATTTCCATC+AGG | + | chr3_3:77689400-77689419 | None:intergenic | 25.0% |
| ! | AAATTAACATATACCTGGAA+GGG | + | chr3_3:77689491-77689510 | None:intergenic | 25.0% |
| ! | AAAATTAACATATACCTGGA+AGG | + | chr3_3:77689492-77689511 | None:intergenic | 25.0% |
| ! | ATGCAAAATTAACATATACC+TGG | + | chr3_3:77689496-77689515 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTTGACTCAATCA+TGG | - | chr3_3:77689515-77689534 | Msa0474750:CDS | 25.0% |
| !! | GTAAGAAAGCTTTAATGAAA+AGG | + | chr3_3:77690035-77690054 | None:intergenic | 25.0% |
| ! | CAAATAAAAAACTGTCAATG+TGG | + | chr3_3:77690222-77690241 | None:intergenic | 25.0% |
| !!! | CAGTTTTTTATTTGACCTTT+TGG | - | chr3_3:77690228-77690247 | Msa0474750:intron | 25.0% |
| !!! | TTTTCTCTAGAATTGCAATT+AGG | - | chr3_3:77690445-77690464 | Msa0474750:intron | 25.0% |
| ! | TGAGAGATAATATTAAAGAG+TGG | + | chr3_3:77690656-77690675 | None:intergenic | 25.0% |
| !! | ACTAATTTGTCTAAATCCTT+TGG | - | chr3_3:77691082-77691101 | Msa0474750:intron | 25.0% |
| ! | AATCATACTATAATTGCCAA+AGG | + | chr3_3:77691101-77691120 | None:intergenic | 25.0% |
| !! | ATAGCTAAATCTATGTTTTC+AGG | - | chr3_3:77691280-77691299 | Msa0474750:intron | 25.0% |
| !! | TAGCATTTTCCATATACTTT+AGG | - | chr3_3:77691839-77691858 | Msa0474750:intron | 25.0% |
| ! | TGGATGATTAATAATAGTTC+AGG | + | chr3_3:77691904-77691923 | None:intergenic | 25.0% |
| ! | TTAAACTTCGTAAAAAGATG+TGG | + | chr3_3:77692058-77692077 | None:intergenic | 25.0% |
| ! | GAAATAATCATTCTATCAAG+GGG | - | chr3_3:77692426-77692445 | Msa0474750:intron | 25.0% |
| ! | TTCATGAAATAGCTATCTTT+GGG | + | chr3_3:77692755-77692774 | None:intergenic | 25.0% |
| ! | ATTCATGAAATAGCTATCTT+TGG | + | chr3_3:77692756-77692775 | None:intergenic | 25.0% |
| !!! | ATCTCTTTTGATTTCCATGA+CGG | - | chr3_3:77686136-77686155 | Msa0474750:three_prime_UTR | 30.0% |
| CTAGCCTAGATAAAAGTAAA+AGG | + | chr3_3:77686979-77686998 | None:intergenic | 30.0% | |
| GAAACAAACAACGTAATTGT+TGG | + | chr3_3:77687402-77687421 | None:intergenic | 30.0% | |
| TTGTTGGATGAAGGTTAATT+AGG | + | chr3_3:77687475-77687494 | None:intergenic | 30.0% | |
| TTAACCTTCATCCAACAATT+TGG | - | chr3_3:77687477-77687496 | Msa0474750:CDS | 30.0% | |
| ! | TTTTCCAAATTGTTGGATGA+AGG | + | chr3_3:77687484-77687503 | None:intergenic | 30.0% |
| ACAATTGAATAGCTAATAGG+TGG | - | chr3_3:77687649-77687668 | Msa0474750:CDS | 30.0% | |
| AACAACAACTTAGACATGTT+TGG | - | chr3_3:77687716-77687735 | Msa0474750:intron | 30.0% | |
| ACAACAACTTAGACATGTTT+GGG | - | chr3_3:77687717-77687736 | Msa0474750:intron | 30.0% | |
| !! | ATTTTAACAGAAGACAATGG+AGG | + | chr3_3:77687763-77687782 | None:intergenic | 30.0% |
| !! | GTGTCGCATTTTTATTTGTT+GGG | - | chr3_3:77687907-77687926 | Msa0474750:intron | 30.0% |
| AATCAAGAGAAATTCTTGCA+TGG | + | chr3_3:77687960-77687979 | None:intergenic | 30.0% | |
| TTTCTTGACATTTCAAAAGG+AGG | + | chr3_3:77688048-77688067 | None:intergenic | 30.0% | |
| ! | AATTGTTTTCTTCTCGTTGT+AGG | - | chr3_3:77688066-77688085 | Msa0474750:intron | 30.0% |
| !! | TATTCTAAAGCAAACACCAA+AGG | - | chr3_3:77688128-77688147 | Msa0474750:intron | 30.0% |
| TTTACGAACTTACAGTCTAT+TGG | - | chr3_3:77688225-77688244 | Msa0474750:intron | 30.0% | |
| TATTAACTCAGCTCAATCTA+TGG | + | chr3_3:77688257-77688276 | None:intergenic | 30.0% | |
| AAACACAGTTACAACTTACA+AGG | - | chr3_3:77688277-77688296 | Msa0474750:intron | 30.0% | |
| AACACAGTTACAACTTACAA+GGG | - | chr3_3:77688278-77688297 | Msa0474750:intron | 30.0% | |
| GTCATTTGGATTTGCATAAA+AGG | - | chr3_3:77688321-77688340 | Msa0474750:intron | 30.0% | |
| AACAGCAATACAAGAAAAAC+GGG | + | chr3_3:77688566-77688585 | None:intergenic | 30.0% | |
| GTTAAAACTTGACACCTAAT+TGG | + | chr3_3:77688613-77688632 | None:intergenic | 30.0% | |
| ATCCTGCAGATATTTCATTT+CGG | - | chr3_3:77689033-77689052 | Msa0474750:intron | 30.0% | |
| ATACTATAATGCTAATGTCC+TGG | - | chr3_3:77689338-77689357 | Msa0474750:intron | 30.0% | |
| !! | TTCTATTATCTTTTCAGGGA+AGG | - | chr3_3:77689372-77689391 | Msa0474750:CDS | 30.0% |
| TTGCGGTTATTATGGAAATT+TGG | - | chr3_3:77689446-77689465 | Msa0474750:intron | 30.0% | |
| GGAATGAATGTTTATTGAGA+TGG | - | chr3_3:77689536-77689555 | Msa0474750:CDS | 30.0% | |
| ! | TCTAGTTTAAGTCATATGCA+AGG | + | chr3_3:77689814-77689833 | None:intergenic | 30.0% |
| ATACAATTGCTCAACCAAAA+AGG | + | chr3_3:77690007-77690026 | None:intergenic | 30.0% | |
| ! | GAAAGCTTTAATGAAAAGGT+AGG | + | chr3_3:77690031-77690050 | None:intergenic | 30.0% |
| ! | AGGATCCTTTCAATTTTATG+TGG | - | chr3_3:77690124-77690143 | Msa0474750:intron | 30.0% |
| GTGGTTTATCAAACTAATCT+TGG | - | chr3_3:77690143-77690162 | Msa0474750:intron | 30.0% | |
| ! | CTCCAATTTAGATAAGCTTT+TGG | - | chr3_3:77690272-77690291 | Msa0474750:CDS | 30.0% |
| AGCCAAAAGCTTATCTAAAT+TGG | + | chr3_3:77690277-77690296 | None:intergenic | 30.0% | |
| ! | TAAAGGCAATTTTGTTGCAA+AGG | + | chr3_3:77690335-77690354 | None:intergenic | 30.0% |
| AAATTCACGTCTTCAAACAT+AGG | + | chr3_3:77690508-77690527 | None:intergenic | 30.0% | |
| TTTGTTACAAGAGTAATGCT+AGG | - | chr3_3:77690626-77690645 | Msa0474750:intron | 30.0% | |
| AACATTTCCTCAGAAACAAA+GGG | + | chr3_3:77690916-77690935 | None:intergenic | 30.0% | |
| AAACATTTCCTCAGAAACAA+AGG | + | chr3_3:77690917-77690936 | None:intergenic | 30.0% | |
| ! | TTACATTGATGACAAGCATA+AGG | + | chr3_3:77690959-77690978 | None:intergenic | 30.0% |
| ATGAACAATCTCATTACAAG+TGG | - | chr3_3:77691239-77691258 | Msa0474750:intron | 30.0% | |
| TCAGGAAATCTCATATCATT+TGG | + | chr3_3:77691441-77691460 | None:intergenic | 30.0% | |
| ! | TGATGAACATTTTGTATCTC+AGG | - | chr3_3:77691554-77691573 | Msa0474750:intron | 30.0% |
| GGATAACATCCTAAAGTATA+TGG | + | chr3_3:77691851-77691870 | None:intergenic | 30.0% | |
| AATGGAAGTCTCGATTTAAT+TGG | + | chr3_3:77691924-77691943 | None:intergenic | 30.0% | |
| GTCTTTACGTACAATTCTAA+TGG | + | chr3_3:77692154-77692173 | None:intergenic | 30.0% | |
| AAAAAATCTCTGTCAAAGCA+AGG | - | chr3_3:77692211-77692230 | Msa0474750:intron | 30.0% | |
| TTGTATATCACCATTAGCTA+AGG | + | chr3_3:77692257-77692276 | None:intergenic | 30.0% | |
| GTCTGATCATAATCAGATAT+TGG | - | chr3_3:77692453-77692472 | Msa0474750:intron | 30.0% | |
| TGATCATAATCAGATATTGG+TGG | - | chr3_3:77692456-77692475 | Msa0474750:intron | 30.0% | |
| !!! | CTTAATTTTTTGTCAACGCT+TGG | - | chr3_3:77692524-77692543 | Msa0474750:intron | 30.0% |
| !!! | CGAATGTTTTTTGCCTTTTT+GGG | + | chr3_3:77692655-77692674 | None:intergenic | 30.0% |
| CCAAAAAGGCAAAAAACATT+CGG | - | chr3_3:77692653-77692672 | Msa0474750:CDS | 30.0% | |
| TCATGAAATAGCTATCTTTG+GGG | + | chr3_3:77692754-77692773 | None:intergenic | 30.0% | |
| TCTGTAAATGATTGATATGG+TGG | - | chr3_3:77692831-77692850 | Msa0474750:five_prime_UTR | 30.0% | |
| ! | TCTTTGAGAGATTAATTTGG+CGG | - | chr3_3:77692862-77692881 | Msa0474750:five_prime_UTR | 30.0% |
| ACCTTACGAAGATATTGGAA+GGG | + | chr3_3:77686212-77686231 | None:intergenic | 35.0% | |
| TACCTTACGAAGATATTGGA+AGG | + | chr3_3:77686213-77686232 | None:intergenic | 35.0% | |
| TTGGTACCTTACGAAGATAT+TGG | + | chr3_3:77686217-77686236 | None:intergenic | 35.0% | |
| AATGTAGATGAAGATGAGTG+AGG | + | chr3_3:77686241-77686260 | None:intergenic | 35.0% | |
| ! | ATTTTCGTCTGTGGAAGTTT+CGG | + | chr3_3:77686344-77686363 | None:intergenic | 35.0% |
| TGTCAGTAGTGAAGAAATCA+AGG | - | chr3_3:77686430-77686449 | Msa0474750:three_prime_UTR | 35.0% | |
| GTCAGTAGTGAAGAAATCAA+GGG | - | chr3_3:77686431-77686450 | Msa0474750:three_prime_UTR | 35.0% | |
| ATTGTGAATTCCAAGCTCTT+TGG | + | chr3_3:77686579-77686598 | None:intergenic | 35.0% | |
| ! | TTCTAAATGGGCTCAAGAAA+AGG | - | chr3_3:77686627-77686646 | Msa0474750:CDS | 35.0% |
| ! | TCTAAATGGGCTCAAGAAAA+GGG | - | chr3_3:77686628-77686647 | Msa0474750:CDS | 35.0% |
| TTTGTAGTGTGCATCTGTTT+CGG | - | chr3_3:77686793-77686812 | Msa0474750:CDS | 35.0% | |
| !!! | TTCATTTTGGTGCTTTGTGA+AGG | + | chr3_3:77686858-77686877 | None:intergenic | 35.0% |
| !! | GGTGCCTTTTACTTTTATCT+AGG | - | chr3_3:77686972-77686991 | Msa0474750:intron | 35.0% |
| !! | TAGAACAATAGCCTTGTAAC+TGG | - | chr3_3:77687058-77687077 | Msa0474750:intron | 35.0% |
| AACATACAAGACCAGTTACA+AGG | + | chr3_3:77687072-77687091 | None:intergenic | 35.0% | |
| ACAAACAACGTAATTGTTGG+AGG | + | chr3_3:77687399-77687418 | None:intergenic | 35.0% | |
| TGTCGAAAAGATAAACCTCT+CGG | - | chr3_3:77687436-77687455 | Msa0474750:CDS | 35.0% | |
| TGGATGAAGGTTAATTAGGT+CGG | + | chr3_3:77687471-77687490 | None:intergenic | 35.0% | |
| !! | GTTTCCGTTGATTTCATTCA+TGG | - | chr3_3:77687784-77687803 | Msa0474750:intron | 35.0% |
| ACCACCATGAATGAAATCAA+CGG | + | chr3_3:77687791-77687810 | None:intergenic | 35.0% | |
| ! | TTCATTCATGGTGGTGATAT+TGG | - | chr3_3:77687796-77687815 | Msa0474750:intron | 35.0% |
| ! | TCATTCATGGTGGTGATATT+GGG | - | chr3_3:77687797-77687816 | Msa0474750:intron | 35.0% |
| !! | CGTGTCGCATTTTTATTTGT+TGG | - | chr3_3:77687906-77687925 | Msa0474750:intron | 35.0% |
| !! | TATGTTTCACTGCTTTTGCT+TGG | - | chr3_3:77688004-77688023 | Msa0474750:intron | 35.0% |
| GGATATGATGTATACCTTGT+AGG | - | chr3_3:77688087-77688106 | Msa0474750:intron | 35.0% | |
| TATGATGTATACCTTGTAGG+AGG | - | chr3_3:77688090-77688109 | Msa0474750:intron | 35.0% | |
| ACACAGTTACAACTTACAAG+GGG | - | chr3_3:77688279-77688298 | Msa0474750:intron | 35.0% | |
| GTTTGTCATGCAATCATACA+AGG | + | chr3_3:77688353-77688372 | None:intergenic | 35.0% | |
| !! | CAAACATTGACTCAATTTGC+AGG | - | chr3_3:77688368-77688387 | Msa0474750:intron | 35.0% |
| !!! | AGGTGATGAAAGTATTTTCC+TGG | - | chr3_3:77688388-77688407 | Msa0474750:intron | 35.0% |
| ! | TTTTCCTGGTGTAAGATAGT+TGG | - | chr3_3:77688402-77688421 | Msa0474750:intron | 35.0% |
| TTTCCTGGTGTAAGATAGTT+GGG | - | chr3_3:77688403-77688422 | Msa0474750:intron | 35.0% | |
| AAATCTACCAACCTCAACAA+TGG | + | chr3_3:77688466-77688485 | None:intergenic | 35.0% | |
| ! | ATTTTATCTCCCGTCCAATT+AGG | - | chr3_3:77688596-77688615 | Msa0474750:intron | 35.0% |
| AAACTTGACACCTAATTGGA+CGG | + | chr3_3:77688609-77688628 | None:intergenic | 35.0% | |
| !! | TCAAGTTTTAACACTGCTAG+AGG | - | chr3_3:77688621-77688640 | Msa0474750:intron | 35.0% |
| GGTGGAAGAATTGTTTAAAC+CGG | - | chr3_3:77688709-77688728 | Msa0474750:intron | 35.0% | |
| GTGGAAGAATTGTTTAAACC+GGG | - | chr3_3:77688710-77688729 | Msa0474750:intron | 35.0% | |
| AACCGGGACTTTACAATTAA+TGG | - | chr3_3:77688726-77688745 | Msa0474750:intron | 35.0% | |
| ACCGGGACTTTACAATTAAT+GGG | - | chr3_3:77688727-77688746 | Msa0474750:intron | 35.0% | |
| ACCCATTAATTGTAAAGTCC+CGG | + | chr3_3:77688731-77688750 | None:intergenic | 35.0% | |
| AACTAACTTCATGTTCTTGC+AGG | - | chr3_3:77688834-77688853 | Msa0474750:intron | 35.0% | |
| GTTGTATATGATTACATGGG+AGG | - | chr3_3:77688881-77688900 | Msa0474750:intron | 35.0% | |
| TCCTGCAGATATTTCATTTC+GGG | - | chr3_3:77689034-77689053 | Msa0474750:intron | 35.0% | |
| ATTTCATTTCGGGAAGATTG+TGG | - | chr3_3:77689044-77689063 | Msa0474750:intron | 35.0% | |
| ! | TATATGCTAGCTTATGGTTC+TGG | - | chr3_3:77689413-77689432 | Msa0474750:intron | 35.0% |
| AAGCTTCTTTGCGGTTATTA+TGG | - | chr3_3:77689438-77689457 | Msa0474750:intron | 35.0% | |
| TTATTGAGATGGAACATCAC+AGG | - | chr3_3:77689547-77689566 | Msa0474750:CDS | 35.0% | |
| ! | CAAAAGGACCAATATGCTTT+TGG | - | chr3_3:77689607-77689626 | Msa0474750:intron | 35.0% |
| ! | ACCAATATGCTTTTGGTAAG+TGG | - | chr3_3:77689614-77689633 | Msa0474750:intron | 35.0% |
| ! | ACCACTTACCAAAAGCATAT+TGG | + | chr3_3:77689618-77689637 | None:intergenic | 35.0% |
| TGGTTATCCAGAAAACTTTC+CGG | + | chr3_3:77689667-77689686 | None:intergenic | 35.0% | |
| AGGAAGAATGATCTCTTGTA+TGG | + | chr3_3:77689687-77689706 | None:intergenic | 35.0% | |
| AGGATAACAAACAAGCTACT+GGG | + | chr3_3:77689717-77689736 | None:intergenic | 35.0% | |
| TCCAAAATATGTGCTTGTTC+AGG | - | chr3_3:77689754-77689773 | Msa0474750:CDS | 35.0% | |
| ! | TCCTGAACAAGCACATATTT+TGG | + | chr3_3:77689758-77689777 | None:intergenic | 35.0% |
| ! | TCCTTTTGTTCCACTACTTA+AGG | - | chr3_3:77689852-77689871 | Msa0474750:intron | 35.0% |
| ! | TCCTTAAGTAGTGGAACAAA+AGG | + | chr3_3:77689856-77689875 | None:intergenic | 35.0% |
| TTGCTCAACCAAAAAGGATT+TGG | + | chr3_3:77690001-77690020 | None:intergenic | 35.0% | |
| GACTGCAATGAAATTCCAAA+AGG | + | chr3_3:77690246-77690265 | None:intergenic | 35.0% | |
| ATGTGTAATGCTTTGTGAAG+AGG | - | chr3_3:77690391-77690410 | Msa0474750:intron | 35.0% | |
| !! | AACAAACACAGATTAGCTTC+TGG | + | chr3_3:77690612-77690631 | None:intergenic | 35.0% |
| CATTACAAGTGGATCAACAA+AGG | - | chr3_3:77691250-77691269 | Msa0474750:intron | 35.0% | |
| TCAATGCTTTATGCAATGCT+AGG | + | chr3_3:77691314-77691333 | None:intergenic | 35.0% | |
| ATCTTGCAGAGTCTATTAGA+GGG | - | chr3_3:77691514-77691533 | Msa0474750:intron | 35.0% | |
| ! | ACATTTTGTATCTCAGGCTA+TGG | - | chr3_3:77691560-77691579 | Msa0474750:intron | 35.0% |
| TTAACAAGTGCCCTAACTAA+GGG | - | chr3_3:77691796-77691815 | Msa0474750:intron | 35.0% | |
| TAAACAAGTGCCCTTAGTTA+GGG | + | chr3_3:77691809-77691828 | None:intergenic | 35.0% | |
| TTAAACAAGTGCCCTTAGTT+AGG | + | chr3_3:77691810-77691829 | None:intergenic | 35.0% | |
| !! | TAACTAAGGGCACTTGTTTA+AGG | - | chr3_3:77691809-77691828 | Msa0474750:intron | 35.0% |
| TTAGGATGTTATCCAGTACA+TGG | - | chr3_3:77691857-77691876 | Msa0474750:intron | 35.0% | |
| ! | ACGTTTTCGAATGTGTGAAA+AGG | - | chr3_3:77692179-77692198 | Msa0474750:intron | 35.0% |
| GATTATGAGTCCTTAGCTAA+TGG | - | chr3_3:77692244-77692263 | Msa0474750:intron | 35.0% | |
| CATAATCAGATATTGGTGGA+AGG | - | chr3_3:77692460-77692479 | Msa0474750:intron | 35.0% | |
| !!! | ATTTTTTGTCAACGCTTGGA+AGG | - | chr3_3:77692528-77692547 | Msa0474750:intron | 35.0% |
| !!! | TTTTTTGTCAACGCTTGGAA+GGG | - | chr3_3:77692529-77692548 | Msa0474750:intron | 35.0% |
| !!! | TTTTTTGCCTTTTTGGGATG+GGG | + | chr3_3:77692649-77692668 | None:intergenic | 35.0% |
| !!! | GTTTTTTGCCTTTTTGGGAT+GGG | + | chr3_3:77692650-77692669 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGCCTTTTTGGGA+TGG | + | chr3_3:77692651-77692670 | None:intergenic | 35.0% |
| !!! | CCGAATGTTTTTTGCCTTTT+TGG | + | chr3_3:77692656-77692675 | None:intergenic | 35.0% |
| ! | AAACATTCGGTCTTCAGTTT+TGG | - | chr3_3:77692666-77692685 | Msa0474750:intron | 35.0% |
| ! | AACATTCGGTCTTCAGTTTT+GGG | - | chr3_3:77692667-77692686 | Msa0474750:intron | 35.0% |
| CATGAAATAGCTATCTTTGG+GGG | + | chr3_3:77692753-77692772 | None:intergenic | 35.0% | |
| TTTGGACGGAGTAATTAGTA+TGG | + | chr3_3:77692889-77692908 | None:intergenic | 35.0% | |
| TCCCTTCCAATATCTTCGTA+AGG | - | chr3_3:77686208-77686227 | Msa0474750:intron | 40.0% | |
| AGATGAAGATGAGTGAGGAT+TGG | + | chr3_3:77686236-77686255 | None:intergenic | 40.0% | |
| TGTGCAGAAATCTATCGTTG+CGG | - | chr3_3:77686309-77686328 | Msa0474750:three_prime_UTR | 40.0% | |
| TCCACAGACGAAAATAGTAG+CGG | - | chr3_3:77686349-77686368 | Msa0474750:three_prime_UTR | 40.0% | |
| TACCTATCTTCTTCCATGCA+GGG | + | chr3_3:77686556-77686575 | None:intergenic | 40.0% | |
| AAGATAGGTACCAAAGAGCT+TGG | - | chr3_3:77686566-77686585 | Msa0474750:three_prime_UTR | 40.0% | |
| GGAATTCACAATTCGTCCAT+TGG | - | chr3_3:77686587-77686606 | Msa0474750:exon | 40.0% | |
| ! | CTAAATGGGCTCAAGAAAAG+GGG | - | chr3_3:77686629-77686648 | Msa0474750:CDS | 40.0% |
| TTGTAGTGTGCATCTGTTTC+GGG | - | chr3_3:77686794-77686813 | Msa0474750:CDS | 40.0% | |
| !! | TGTGAAGGTACTTAGATGCA+CGG | + | chr3_3:77686843-77686862 | None:intergenic | 40.0% |
| ! | CCACTGTTTTCACATTGACA+AGG | + | chr3_3:77686954-77686973 | None:intergenic | 40.0% |
| CCTTGTCAATGTGAAAACAG+TGG | - | chr3_3:77686951-77686970 | Msa0474750:intron | 40.0% | |
| TCATAGCTTAAGCACGCATA+AGG | - | chr3_3:77687091-77687110 | Msa0474750:intron | 40.0% | |
| GAGAAATTCTTGCATGGTCT+CGG | - | chr3_3:77687227-77687246 | Msa0474750:intron | 40.0% | |
| AACAACGTAATTGTTGGAGG+CGG | + | chr3_3:77687396-77687415 | None:intergenic | 40.0% | |
| TGAAGCGATCATCAAACTTG+TGG | - | chr3_3:77687527-77687546 | Msa0474750:CDS | 40.0% | |
| GAAGCGATCATCAAACTTGT+GGG | - | chr3_3:77687528-77687547 | Msa0474750:CDS | 40.0% | |
| AAGCGATCATCAAACTTGTG+GGG | - | chr3_3:77687529-77687548 | Msa0474750:CDS | 40.0% | |
| !! | TCCGTTGATTTCATTCATGG+TGG | - | chr3_3:77687787-77687806 | Msa0474750:intron | 40.0% |
| GAGAAATTCTTGCATGGTCT+CGG | + | chr3_3:77687227-77687246 | None:intergenic | 40.0% | |
| AACTTCAGCTGAGCTAAAAG+AGG | - | chr3_3:77688164-77688183 | Msa0474750:intron | 40.0% | |
| GTTGTGCTTACACTGTCATT+TGG | - | chr3_3:77688307-77688326 | Msa0474750:intron | 40.0% | |
| TTTCCCAACTATCTTACACC+AGG | + | chr3_3:77688409-77688428 | None:intergenic | 40.0% | |
| TCCATGTGAACATGGCATAT+GGG | + | chr3_3:77688438-77688457 | None:intergenic | 40.0% | |
| ATCCATGTGAACATGGCATA+TGG | + | chr3_3:77688439-77688458 | None:intergenic | 40.0% | |
| TGGTATCATCCATGTGAACA+TGG | + | chr3_3:77688446-77688465 | None:intergenic | 40.0% | |
| CATGGATGATACCATTGTTG+AGG | - | chr3_3:77688452-77688471 | Msa0474750:intron | 40.0% | |
| GATGATACCATTGTTGAGGT+TGG | - | chr3_3:77688456-77688475 | Msa0474750:intron | 40.0% | |
| AACTTGACACCTAATTGGAC+GGG | + | chr3_3:77688608-77688627 | None:intergenic | 40.0% | |
| AGCACCTAATAGTTGTGAGA+AGG | - | chr3_3:77688677-77688696 | Msa0474750:CDS | 40.0% | |
| AGGTCCTTCTCACAACTATT+AGG | + | chr3_3:77688684-77688703 | None:intergenic | 40.0% | |
| AACAATTCTTCCACCGAAGA+AGG | + | chr3_3:77688704-77688723 | None:intergenic | 40.0% | |
| CAACTCTTTCATATGGGTCA+AGG | + | chr3_3:77688865-77688884 | None:intergenic | 40.0% | |
| AAAACCCTCACAATTCTGCT+GGG | + | chr3_3:77688975-77688994 | None:intergenic | 40.0% | |
| AAAAACCCTCACAATTCTGC+TGG | + | chr3_3:77688976-77688995 | None:intergenic | 40.0% | |
| TCCCGAAATGAAATATCTGC+AGG | + | chr3_3:77689038-77689057 | None:intergenic | 40.0% | |
| AAGCGTAGGTGATTCCAAAA+TGG | + | chr3_3:77689127-77689146 | None:intergenic | 40.0% | |
| ! | ACCTACGCTTTGAATTAGCT+TGG | - | chr3_3:77689137-77689156 | Msa0474750:intron | 40.0% |
| ACCAAGCTAATTCAAAGCGT+AGG | + | chr3_3:77689141-77689160 | None:intergenic | 40.0% | |
| CGAGCTGAAGAAAGGAAAAA+TGG | + | chr3_3:77689174-77689193 | None:intergenic | 40.0% | |
| ATTAGAATTGCTGCTCGCTT+AGG | - | chr3_3:77689207-77689226 | Msa0474750:intron | 40.0% | |
| AGATATACTTCTTCCCTTCC+AGG | - | chr3_3:77689475-77689494 | Msa0474750:intron | 40.0% | |
| ! | GTTTACACCGGAAAGTTTTC+TGG | - | chr3_3:77689657-77689676 | Msa0474750:intron | 40.0% |
| CAGGATAACAAACAAGCTAC+TGG | + | chr3_3:77689718-77689737 | None:intergenic | 40.0% | |
| ! | GGAAGCACAACTTCATTTAC+AGG | + | chr3_3:77689737-77689756 | None:intergenic | 40.0% |
| TATCGCATGTCCTTAAGTAG+TGG | + | chr3_3:77689865-77689884 | None:intergenic | 40.0% | |
| ! | ACAAGCCACCAAATCCTTTT+TGG | - | chr3_3:77689990-77690009 | Msa0474750:intron | 40.0% |
| CTCAACCAAAAAGGATTTGG+TGG | + | chr3_3:77689998-77690017 | None:intergenic | 40.0% | |
| ATAAGCTGCCATAACATGGA+CGG | + | chr3_3:77690305-77690324 | None:intergenic | 40.0% | |
| TACCATAAGCTGCCATAACA+TGG | + | chr3_3:77690309-77690328 | None:intergenic | 40.0% | |
| ! | AAAGGAGGCACAGAAGATAA+AGG | + | chr3_3:77690352-77690371 | None:intergenic | 40.0% |
| CCAATGACGAAAACTGAGAA+AGG | + | chr3_3:77691132-77691151 | None:intergenic | 40.0% | |
| ! | CCTTTCTCAGTTTTCGTCAT+TGG | - | chr3_3:77691129-77691148 | Msa0474750:intron | 40.0% |
| CACAAAGACTCAGAACAGTT+AGG | + | chr3_3:77691189-77691208 | None:intergenic | 40.0% | |
| ! | CTAACTGTTCTGAGTCTTTG+TGG | - | chr3_3:77691187-77691206 | Msa0474750:intron | 40.0% |
| TTCTGAGTCTTTGTGGAACA+TGG | - | chr3_3:77691194-77691213 | Msa0474750:intron | 40.0% | |
| !! | TTTAGCCTTGCAGTCCATAA+TGG | - | chr3_3:77691369-77691388 | Msa0474750:intron | 40.0% |
| CCAACAAATTCCCACCATTA+TGG | + | chr3_3:77691386-77691405 | None:intergenic | 40.0% | |
| ! | CCATAATGGTGGGAATTTGT+TGG | - | chr3_3:77691383-77691402 | Msa0474750:intron | 40.0% |
| CCAGAAGGATCTAACAATTC+AGG | + | chr3_3:77691459-77691478 | None:intergenic | 40.0% | |
| CCTGAATTGTTAGATCCTTC+TGG | - | chr3_3:77691456-77691475 | Msa0474750:intron | 40.0% | |
| TCCTTCTGGTATGAATGCAA+AGG | - | chr3_3:77691470-77691489 | Msa0474750:intron | 40.0% | |
| ! | TGGTATGAATGCAAAGGCAT+TGG | - | chr3_3:77691476-77691495 | Msa0474750:intron | 40.0% |
| GATCTTGCAGAGTCTATTAG+AGG | - | chr3_3:77691513-77691532 | Msa0474750:intron | 40.0% | |
| TGCTCACTAAGTCAGAATGA+GGG | + | chr3_3:77691602-77691621 | None:intergenic | 40.0% | |
| ATGCTCACTAAGTCAGAATG+AGG | + | chr3_3:77691603-77691622 | None:intergenic | 40.0% | |
| !! | ATCCTTAAAAAGTGCCCTCA+GGG | + | chr3_3:77691670-77691689 | None:intergenic | 40.0% |
| !! | TATCCTTAAAAAGTGCCCTC+AGG | + | chr3_3:77691671-77691690 | None:intergenic | 40.0% |
| CTTAACAAGTGCCCTAACTA+AGG | - | chr3_3:77691795-77691814 | Msa0474750:intron | 40.0% | |
| ! | ACTTCCATTTTCCTCTCCAA+TGG | - | chr3_3:77691935-77691954 | Msa0474750:intron | 40.0% |
| TGGGTAAAACATGTAGAGAG+AGG | - | chr3_3:77691970-77691989 | Msa0474750:intron | 40.0% | |
| GGGTAAAACATGTAGAGAGA+GGG | - | chr3_3:77691971-77691990 | Msa0474750:intron | 40.0% | |
| TTAATGCCTGATCCTGATCT+TGG | + | chr3_3:77692333-77692352 | None:intergenic | 40.0% | |
| TGTGAGTGAGTTAAATGCCT+TGG | + | chr3_3:77692574-77692593 | None:intergenic | 40.0% | |
| TTGATTTCCATGACGGTCAC+TGG | - | chr3_3:77686143-77686162 | Msa0474750:three_prime_UTR | 45.0% | |
| GACGAAGATGAAGAGTGGAT+TGG | + | chr3_3:77686184-77686203 | None:intergenic | 45.0% | |
| CGAAGATATTGGAAGGGAGT+GGG | + | chr3_3:77686206-77686225 | None:intergenic | 45.0% | |
| ACGAAGATATTGGAAGGGAG+TGG | + | chr3_3:77686207-77686226 | None:intergenic | 45.0% | |
| ! | ACCGCTACTATTTTCGTCTG+TGG | + | chr3_3:77686353-77686372 | None:intergenic | 45.0% |
| ACAGACGAAAATAGTAGCGG+TGG | - | chr3_3:77686352-77686371 | Msa0474750:three_prime_UTR | 45.0% | |
| GAAATGAGAAATCCCCTGCA+TGG | - | chr3_3:77686540-77686559 | Msa0474750:three_prime_UTR | 45.0% | |
| ACCTATCTTCTTCCATGCAG+GGG | + | chr3_3:77686555-77686574 | None:intergenic | 45.0% | |
| GTACCTATCTTCTTCCATGC+AGG | + | chr3_3:77686557-77686576 | None:intergenic | 45.0% | |
| ! | TGAGCCCATTTAGAACCTTC+CGG | + | chr3_3:77686622-77686641 | None:intergenic | 45.0% |
| ACCCATGCTGCTACAATTGT+CGG | + | chr3_3:77686931-77686950 | None:intergenic | 45.0% | |
| CGGACATAACACGTCATTCT+TGG | - | chr3_3:77687247-77687266 | Msa0474750:intron | 45.0% | |
| AGTGGAGATCAGATGCATGA+AGG | + | chr3_3:77687357-77687376 | None:intergenic | 45.0% | |
| !! | AAAGAGATTGGCTTCCATCG+TGG | - | chr3_3:77687833-77687852 | Msa0474750:intron | 45.0% |
| CGGACATAACACGTCATTCT+TGG | + | chr3_3:77687247-77687266 | None:intergenic | 45.0% | |
| ACCTTGTAGGAGGTTGTGTA+CGG | - | chr3_3:77688100-77688119 | Msa0474750:intron | 45.0% | |
| CCATGTGAACATGGCATATG+GGG | + | chr3_3:77688437-77688456 | None:intergenic | 45.0% | |
| TAACACTGCTAGAGGCAAGA+AGG | - | chr3_3:77688629-77688648 | Msa0474750:intron | 45.0% | |
| AACACTGCTAGAGGCAAGAA+GGG | - | chr3_3:77688630-77688649 | Msa0474750:intron | 45.0% | |
| GTTGTGAGAAGGACCTTCTT+CGG | - | chr3_3:77688688-77688707 | Msa0474750:CDS | 45.0% | |
| AAGAAGACAACCGCACAAAC+TGG | + | chr3_3:77688760-77688779 | None:intergenic | 45.0% | |
| TTGTGCGGTTGTCTTCTTTG+TGG | - | chr3_3:77688762-77688781 | Msa0474750:intron | 45.0% | |
| TCTTTCCCAGCAGAATTGTG+AGG | - | chr3_3:77688967-77688986 | Msa0474750:intron | 45.0% | |
| CTTTCCCAGCAGAATTGTGA+GGG | - | chr3_3:77688968-77688987 | Msa0474750:intron | 45.0% | |
| GTAGAATGCGAGCTGAAGAA+AGG | + | chr3_3:77689182-77689201 | None:intergenic | 45.0% | |
| GTTCTGGTGAAGCTTCTTTG+CGG | - | chr3_3:77689429-77689448 | Msa0474750:intron | 45.0% | |
| !!! | GCTGCTTATTTTGCTCACCA+TGG | - | chr3_3:77689569-77689588 | Msa0474750:CDS | 45.0% |
| TTGCTCACCATGGATTTCGA+AGG | - | chr3_3:77689579-77689598 | Msa0474750:intron | 45.0% | |
| TCACCATGGATTTCGAAGGA+GGG | - | chr3_3:77689583-77689602 | Msa0474750:intron | 45.0% | |
| GATTTCGAAGGAGGGACAAA+AGG | - | chr3_3:77689591-77689610 | Msa0474750:intron | 45.0% | |
| GTGGTAACCTCACTCTTTCA+CGG | - | chr3_3:77689633-77689652 | Msa0474750:intron | 45.0% | |
| GTAAACTCCGTGAAAGAGTG+AGG | + | chr3_3:77689643-77689662 | None:intergenic | 45.0% | |
| CTCTTTCACGGAGTTTACAC+CGG | - | chr3_3:77689645-77689664 | Msa0474750:intron | 45.0% | |
| !! | ACAAGCTACTGGGTTAGCTT+AGG | + | chr3_3:77689707-77689726 | None:intergenic | 45.0% |
| AGATCGTCCAAGTAGTGAGA+TGG | - | chr3_3:77690084-77690103 | Msa0474750:CDS | 45.0% | |
| GATCGTCCAAGTAGTGAGAT+GGG | - | chr3_3:77690085-77690104 | Msa0474750:CDS | 45.0% | |
| ATCGTCCAAGTAGTGAGATG+GGG | - | chr3_3:77690086-77690105 | Msa0474750:CDS | 45.0% | |
| GTCCATGTTATGGCAGCTTA+TGG | - | chr3_3:77690304-77690323 | Msa0474750:CDS | 45.0% | |
| ! | CTTTGAAGATCACGTCAGTG+TGG | - | chr3_3:77690472-77690491 | Msa0474750:intron | 45.0% |
| CACGTCAGTGTGGTATAAGA+TGG | - | chr3_3:77690482-77690501 | Msa0474750:intron | 45.0% | |
| CCTCAGAAACAAAGGGAGAA+AGG | + | chr3_3:77690909-77690928 | None:intergenic | 45.0% | |
| !! | CCTTTCTCCCTTTGTTTCTG+AGG | - | chr3_3:77690906-77690925 | Msa0474750:intron | 45.0% |
| ! | TCTCAGTTTTCGTCATTGGC+AGG | - | chr3_3:77691133-77691152 | Msa0474750:intron | 45.0% |
| !! | AAGCATTGAGTGATCGACCA+AGG | - | chr3_3:77691325-77691344 | Msa0474750:intron | 45.0% |
| ! | AGCATTGAGTGATCGACCAA+GGG | - | chr3_3:77691326-77691345 | Msa0474750:intron | 45.0% |
| TTGGAAGCAGTGAACATAGC+AGG | - | chr3_3:77691402-77691421 | Msa0474750:intron | 45.0% | |
| TGGAAGCAGTGAACATAGCA+GGG | - | chr3_3:77691403-77691422 | Msa0474750:intron | 45.0% | |
| GCCTTTGCATTCATACCAGA+AGG | + | chr3_3:77691474-77691493 | None:intergenic | 45.0% | |
| !! | AATGCAAAGGCATTGGAAGC+TGG | - | chr3_3:77691483-77691502 | Msa0474750:intron | 45.0% |
| !! | ATGCAAAGGCATTGGAAGCT+GGG | - | chr3_3:77691484-77691503 | Msa0474750:intron | 45.0% |
| GCTCACTAAGTCAGAATGAG+GGG | + | chr3_3:77691601-77691620 | None:intergenic | 45.0% | |
| TTCTCGTGCAAACCATGTAC+TGG | + | chr3_3:77691872-77691891 | None:intergenic | 45.0% | |
| ! | AGTGCCATTGGAGAGGAAAA+TGG | + | chr3_3:77691942-77691961 | None:intergenic | 45.0% |
| TCCAATGGCACTCACATTGA+TGG | - | chr3_3:77691950-77691969 | Msa0474750:intron | 45.0% | |
| CCAATGGCACTCACATTGAT+GGG | - | chr3_3:77691951-77691970 | Msa0474750:intron | 45.0% | |
| CGAATGTGTGAAAAGGAGTG+CGG | - | chr3_3:77692186-77692205 | Msa0474750:intron | 45.0% | |
| GATCCTGATCTTGGTGAAGT+GGG | + | chr3_3:77692324-77692343 | None:intergenic | 45.0% | |
| TGATCCTGATCTTGGTGAAG+TGG | + | chr3_3:77692325-77692344 | None:intergenic | 45.0% | |
| ACTTCACCAAGATCAGGATC+AGG | - | chr3_3:77692324-77692343 | Msa0474750:intron | 45.0% | |
| TCAGGCATTAAAGAGCAGCT+CGG | - | chr3_3:77692342-77692361 | Msa0474750:CDS | 45.0% | |
| CTGTAAGTACCTCTCAGAGT+TGG | + | chr3_3:77692493-77692512 | None:intergenic | 45.0% | |
| !! | CAACTCTGAGAGGTACTTAC+AGG | - | chr3_3:77692491-77692510 | Msa0474750:intron | 45.0% |
| CTCACATGCTACATAGCCAA+CGG | - | chr3_3:77692588-77692607 | Msa0474750:CDS | 45.0% | |
| ACATAGCCAACGGATAGTGT+AGG | - | chr3_3:77692598-77692617 | Msa0474750:CDS | 45.0% | |
| GATCTTCCTACACTATCCGT+TGG | + | chr3_3:77692607-77692626 | None:intergenic | 45.0% | |
| AAAGTGACCCCATCCCAAAA+AGG | - | chr3_3:77692639-77692658 | Msa0474750:CDS | 45.0% | |
| ! | TTTGAAGCCAGTGACCGTCA+TGG | + | chr3_3:77686153-77686172 | None:intergenic | 50.0% |
| AGTGGGACGAAGATGAAGAG+TGG | + | chr3_3:77686189-77686208 | None:intergenic | 50.0% | |
| GAAAATAGTAGCGGTGGCTG+TGG | - | chr3_3:77686358-77686377 | Msa0474750:three_prime_UTR | 50.0% | |
| GGCGTCTCAATTCGTGAAGA+AGG | - | chr3_3:77686379-77686398 | Msa0474750:three_prime_UTR | 50.0% | |
| TCCCCTGCATGGAAGAAGAT+AGG | - | chr3_3:77686551-77686570 | Msa0474750:three_prime_UTR | 50.0% | |
| ! | ATTTAGAACCTTCCGGGCAG+CGG | + | chr3_3:77686615-77686634 | None:intergenic | 50.0% |
| !! | CTGCCCGGAAGGTTCTAAAT+GGG | - | chr3_3:77686615-77686634 | Msa0474750:CDS | 50.0% |
| ! | GAGCCCATTTAGAACCTTCC+GGG | + | chr3_3:77686621-77686640 | None:intergenic | 50.0% |
| ATGCTGCTACAATTGTCGGG+GGG | + | chr3_3:77686927-77686946 | None:intergenic | 50.0% | |
| CATGCTGCTACAATTGTCGG+GGG | + | chr3_3:77686928-77686947 | None:intergenic | 50.0% | |
| CCATGCTGCTACAATTGTCG+GGG | + | chr3_3:77686929-77686948 | None:intergenic | 50.0% | |
| CCCATGCTGCTACAATTGTC+GGG | + | chr3_3:77686930-77686949 | None:intergenic | 50.0% | |
| CCCGACAATTGTAGCAGCAT+GGG | - | chr3_3:77686927-77686946 | Msa0474750:intron | 50.0% | |
| GGAGCTTAAACTTCTGGCAG+TGG | + | chr3_3:77687375-77687394 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGATATTGGGTCG+TGG | - | chr3_3:77687803-77687822 | Msa0474750:intron | 50.0% |
| TGGTGATATTGGGTCGTGGT+TGG | - | chr3_3:77687807-77687826 | Msa0474750:intron | 50.0% | |
| GGTGATATTGGGTCGTGGTT+GGG | - | chr3_3:77687808-77687827 | Msa0474750:intron | 50.0% | |
| CGTGGTTGGGTGAAAGAGAT+TGG | - | chr3_3:77687821-77687840 | Msa0474750:intron | 50.0% | |
| AATGCACAACACAGCCACGA+TGG | + | chr3_3:77687850-77687869 | None:intergenic | 50.0% | |
| CCTTGTAGGAGGTTGTGTAC+GGG | - | chr3_3:77688101-77688120 | Msa0474750:intron | 50.0% | |
| CCCCATATGCCATGTTCACA+TGG | - | chr3_3:77688434-77688453 | Msa0474750:intron | 50.0% | |
| GGGTAGTGTACCAGTTTGTG+CGG | - | chr3_3:77688747-77688766 | Msa0474750:intron | 50.0% | |
| !! | TTTTCAGGGAAGGCTCCTGA+TGG | - | chr3_3:77689382-77689401 | Msa0474750:CDS | 50.0% |
| CTCACCATGGATTTCGAAGG+AGG | - | chr3_3:77689582-77689601 | Msa0474750:intron | 50.0% | |
| TGTCCCTCCTTCGAAATCCA+TGG | + | chr3_3:77689589-77689608 | None:intergenic | 50.0% | |
| GTACGCACTACATGCAGCAT+AGG | - | chr3_3:77689892-77689911 | Msa0474750:intron | 50.0% | |
| CAAGTAGTGAGATGGGGTGT+CGG | - | chr3_3:77690092-77690111 | Msa0474750:CDS | 50.0% | |
| ! | AAGTAGTGAGATGGGGTGTC+GGG | - | chr3_3:77690093-77690112 | Msa0474750:CDS | 50.0% |
| GCTCCAAACCGTCCATGTTA+TGG | - | chr3_3:77690294-77690313 | Msa0474750:CDS | 50.0% | |
| CTGCCATAACATGGACGGTT+TGG | + | chr3_3:77690300-77690319 | None:intergenic | 50.0% | |
| CTAAATGCAGCAACCACCAG+GGG | + | chr3_3:77691354-77691373 | None:intergenic | 50.0% | |
| GCTAAATGCAGCAACCACCA+GGG | + | chr3_3:77691355-77691374 | None:intergenic | 50.0% | |
| AGCCTTGCAGTCCATAATGG+TGG | - | chr3_3:77691372-77691391 | Msa0474750:intron | 50.0% | |
| GCCTTGCAGTCCATAATGGT+GGG | - | chr3_3:77691373-77691392 | Msa0474750:intron | 50.0% | |
| ! | TCCCACCATTATGGACTGCA+AGG | + | chr3_3:77691377-77691396 | None:intergenic | 50.0% |
| !! | TGCAAAGGCATTGGAAGCTG+GGG | - | chr3_3:77691485-77691504 | Msa0474750:intron | 50.0% |
| ATGAGGGGCTTGAGGATAGT+CGG | + | chr3_3:77691586-77691605 | None:intergenic | 50.0% | |
| AAGTCAGAATGAGGGGCTTG+AGG | + | chr3_3:77691594-77691613 | None:intergenic | 50.0% | |
| TCTTGCTAACAAGTGCCCTG+AGG | - | chr3_3:77691652-77691671 | Msa0474750:intron | 50.0% | |
| CTTGCTAACAAGTGCCCTGA+GGG | - | chr3_3:77691653-77691672 | Msa0474750:intron | 50.0% | |
| !!! | TGCCCTGAGGGCACTTTTTA+AGG | - | chr3_3:77691665-77691684 | Msa0474750:intron | 50.0% |
| ! | CAATGTGAGTGCCATTGGAG+AGG | + | chr3_3:77691949-77691968 | None:intergenic | 50.0% |
| CCCATCAATGTGAGTGCCAT+TGG | + | chr3_3:77691954-77691973 | None:intergenic | 50.0% | |
| ! | GGGAGCGTGAAAATCACGAT+TGG | - | chr3_3:77691991-77692010 | Msa0474750:intron | 50.0% |
| GTTCCCACTTCACCAAGATC+AGG | - | chr3_3:77692318-77692337 | Msa0474750:intron | 50.0% | |
| AAAGAGCAGCTCGGTTTCAC+TGG | - | chr3_3:77692351-77692370 | Msa0474750:CDS | 50.0% | |
| AAGAGCAGCTCGGTTTCACT+GGG | - | chr3_3:77692352-77692371 | Msa0474750:CDS | 50.0% | |
| !! | TCACTGGGAGGCTAGTTTGA+AGG | - | chr3_3:77692367-77692386 | Msa0474750:CDS | 50.0% |
| GGTCGAATTCCAACTCTGAG+AGG | - | chr3_3:77692481-77692500 | Msa0474750:intron | 50.0% | |
| AGGGTTCGGGGGTTTAAGAG+AGG | + | chr3_3:77686071-77686090 | None:intergenic | 55.0% | |
| TAGCTAGCGCATAGGGTTCG+GGG | + | chr3_3:77686083-77686102 | None:intergenic | 55.0% | |
| CTAGCTAGCGCATAGGGTTC+GGG | + | chr3_3:77686084-77686103 | None:intergenic | 55.0% | |
| GCTAGCTAGCGCATAGGGTT+CGG | + | chr3_3:77686085-77686104 | None:intergenic | 55.0% | |
| ACCCTATGCGCTAGCTAGCT+CGG | - | chr3_3:77686086-77686105 | Msa0474750:three_prime_UTR | 55.0% | |
| ACCGAGCTAGCTAGCGCATA+GGG | + | chr3_3:77686090-77686109 | None:intergenic | 55.0% | |
| ! | TTTAGAACCTTCCGGGCAGC+GGG | + | chr3_3:77686614-77686633 | None:intergenic | 55.0% |
| !! | GCTGCCCGGAAGGTTCTAAA+TGG | - | chr3_3:77686614-77686633 | Msa0474750:CDS | 55.0% |
| TGCTGCTACAATTGTCGGGG+GGG | + | chr3_3:77686926-77686945 | None:intergenic | 55.0% | |
| CCCCGACAATTGTAGCAGCA+TGG | - | chr3_3:77686926-77686945 | Msa0474750:intron | 55.0% | |
| CATGAAGGAGAGAGAGAGCG+AGG | + | chr3_3:77687342-77687361 | None:intergenic | 55.0% | |
| GGAGGCGGAGCTTAAACTTC+TGG | + | chr3_3:77687381-77687400 | None:intergenic | 55.0% | |
| CAAACTTGTGGGGAGCAGTG+AGG | - | chr3_3:77687539-77687558 | Msa0474750:CDS | 55.0% | |
| CCCGTACACAACCTCCTACA+AGG | + | chr3_3:77688104-77688123 | None:intergenic | 55.0% | |
| TGCTAGAGGCAAGAAGGGTG+TGG | - | chr3_3:77688635-77688654 | Msa0474750:intron | 55.0% | |
| GTGAGAAGGACCTTCTTCGG+TGG | - | chr3_3:77688691-77688710 | Msa0474750:CDS | 55.0% | |
| CGACACCCCATCTCACTACT+TGG | + | chr3_3:77690094-77690113 | None:intergenic | 55.0% | |
| GGCTAAATGCAGCAACCACC+AGG | + | chr3_3:77691356-77691375 | None:intergenic | 55.0% | |
| !! | AGGCATTGGAAGCTGGGGTT+AGG | - | chr3_3:77691490-77691509 | Msa0474750:intron | 55.0% |
| ! | GGCATTGGAAGCTGGGGTTA+GGG | - | chr3_3:77691491-77691510 | Msa0474750:intron | 55.0% |
| !! | GGAAGGGTACTACTCTGCTC+TGG | - | chr3_3:77692545-77692564 | Msa0474750:intron | 55.0% |
| CTACTCTGCTCTGGCATCCA+AGG | - | chr3_3:77692554-77692573 | Msa0474750:intron | 55.0% | |
| AGCTAGCGCATAGGGTTCGG+GGG | + | chr3_3:77686082-77686101 | None:intergenic | 60.0% | |
| CACCGAGCTAGCTAGCGCAT+AGG | + | chr3_3:77686091-77686110 | None:intergenic | 60.0% | |
| GCTACAATTGTCGGGGGGGA+TGG | + | chr3_3:77686922-77686941 | None:intergenic | 60.0% | |
| ACTTGTGGGGAGCAGTGAGG+CGG | - | chr3_3:77687542-77687561 | Msa0474750:CDS | 60.0% | |
| !! | TGAGATGGGGTGTCGGGCTA+TGG | - | chr3_3:77690099-77690118 | Msa0474750:CDS | 60.0% |
| TGATCGACCAAGGGATCCCC+TGG | - | chr3_3:77691335-77691354 | Msa0474750:intron | 60.0% | |
| AGCAGCTCGGTTTCACTGGG+AGG | - | chr3_3:77692355-77692374 | Msa0474750:CDS | 60.0% | |
| !! | GGTCGGTGATGAGCACCGAG+AGG | + | chr3_3:77687454-77687473 | None:intergenic | 65.0% |
| TCGACCAAGGGATCCCCTGG+TGG | - | chr3_3:77691338-77691357 | Msa0474750:intron | 65.0% | |
| GCAACCACCAGGGGATCCCT+TGG | + | chr3_3:77691345-77691364 | None:intergenic | 65.0% | |
| CGTCCATTGGACCCGCTGCC+CGG | - | chr3_3:77686600-77686619 | Msa0474750:CDS | 70.0% | |
| CTTCCGGGCAGCGGGTCCAA+TGG | + | chr3_3:77686606-77686625 | None:intergenic | 70.0% | |
| CATTGGACCCGCTGCCCGGA+AGG | - | chr3_3:77686604-77686623 | Msa0474750:CDS | 70.0% | |
| !! | TGGGGTGTCGGGCTATGGCG+AGG | - | chr3_3:77690104-77690123 | Msa0474750:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 77686067 | 77692913 | 77686067 | ID=Msa0474750;Name=Msa0474750 |
| chr3_3 | mRNA | 77686067 | 77692913 | 77686067 | ID=Msa0474750-mRNA-1;Parent=Msa0474750;Name=Msa0474750-mRNA-1;_AED=0.14;_eAED=0.14;_QI=85|1|1|1|0.92|0.86|15|499|535 |
| chr3_3 | exon | 77686067 | 77686221 | 77686067 | ID=Msa0474750-mRNA-1:exon:20870;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77686255 | 77686838 | 77686255 | ID=Msa0474750-mRNA-1:exon:20869;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77687366 | 77687678 | 77687366 | ID=Msa0474750-mRNA-1:exon:20868;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77688655 | 77688716 | 77688655 | ID=Msa0474750-mRNA-1:exon:20867;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77689352 | 77689411 | 77689352 | ID=Msa0474750-mRNA-1:exon:20866;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77689484 | 77689591 | 77689484 | ID=Msa0474750-mRNA-1:exon:20865;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77689681 | 77689790 | 77689681 | ID=Msa0474750-mRNA-1:exon:20864;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77689915 | 77689960 | 77689915 | ID=Msa0474750-mRNA-1:exon:20863;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77690052 | 77690124 | 77690052 | ID=Msa0474750-mRNA-1:exon:20862;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77690232 | 77690362 | 77690232 | ID=Msa0474750-mRNA-1:exon:20861;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77690507 | 77690590 | 77690507 | ID=Msa0474750-mRNA-1:exon:20860;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77690795 | 77690892 | 77690795 | ID=Msa0474750-mRNA-1:exon:20859;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77692330 | 77692440 | 77692330 | ID=Msa0474750-mRNA-1:exon:20858;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77692580 | 77692673 | 77692580 | ID=Msa0474750-mRNA-1:exon:20857;Parent=Msa0474750-mRNA-1 |
| chr3_3 | exon | 77692751 | 77692913 | 77692751 | ID=Msa0474750-mRNA-1:exon:20856;Parent=Msa0474750-mRNA-1 |
| chr3_3 | five_prime_UTR | 77692829 | 77692913 | 77692829 | ID=Msa0474750-mRNA-1:five_prime_utr;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77692751 | 77692828 | 77692751 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77692580 | 77692673 | 77692580 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77692330 | 77692440 | 77692330 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77690795 | 77690892 | 77690795 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77690507 | 77690590 | 77690507 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77690232 | 77690362 | 77690232 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77690052 | 77690124 | 77690052 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77689915 | 77689960 | 77689915 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77689681 | 77689790 | 77689681 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77689484 | 77689591 | 77689484 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77689352 | 77689411 | 77689352 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77688655 | 77688716 | 77688655 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77687366 | 77687678 | 77687366 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | CDS | 77686599 | 77686838 | 77686599 | ID=Msa0474750-mRNA-1:cds;Parent=Msa0474750-mRNA-1 |
| chr3_3 | three_prime_UTR | 77686255 | 77686598 | 77686255 | ID=Msa0474750-mRNA-1:three_prime_utr;Parent=Msa0474750-mRNA-1 |
| chr3_3 | three_prime_UTR | 77686067 | 77686221 | 77686067 | ID=Msa0474750-mRNA-1:three_prime_utr;Parent=Msa0474750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
