AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378890 MtrunA17_Chr3g0131921 98.718 78 1 0 1 78 1 78 9.53e-55 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378890 AT5G50810.1 67.105 76 25 0 1 76 1 76 2.99e-30 102

Find 37 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTAATATTTAGCAAATTT+TGG 0.095082 3_1:+79757819 Msa0378890:three_prime_UTR
TTGTGCTGTGTTCGTTCATT+AGG 0.201592 3_1:+79756565 Msa0378890:five_prime_UTR
TGTGCTGTGTTCGTTCATTA+GGG 0.329856 3_1:+79756566 Msa0378890:five_prime_UTR
AAGAGCCATGATTAATGAAA+TGG 0.403854 3_1:+79757587 Msa0378890:CDS
TGCCACCATTTCATTAATCA+TGG 0.406262 3_1:-79757592 None:intergenic
AAATGCATCACAGGCACGCC+TGG 0.412006 3_1:+79757639 Msa0378890:CDS
GCGATTGAGAGGAGAGAGAG+AGG 0.454188 3_1:-79756617 None:intergenic
CCTGGGAATAAGTTCAGTTC+CGG 0.455891 3_1:+79757657 Msa0378890:CDS
AAAATAGCAATCAGAACCTT+CGG 0.481003 3_1:-79758128 None:intergenic
GATTGAGAGGAGAGAGAGAG+GGG 0.490740 3_1:-79756615 None:intergenic
CAAAGATGACTAGTCAATGC+TGG 0.492799 3_1:+79757613 Msa0378890:CDS
TCTCAATCGCTCTCTCTCAA+TGG 0.494922 3_1:+79756630 Msa0378890:exon
TCTGCATTTCAGCAGAATTG+AGG 0.501147 3_1:-79756663 None:intergenic
TTACTGCTTGTTTGACTGAA+GGG 0.501469 3_1:+79757935 Msa0378890:three_prime_UTR
CGATTGAGAGGAGAGAGAGA+GGG 0.507573 3_1:-79756616 None:intergenic
ACACTGTGCACAGCGTTACA+TGG 0.508169 3_1:+79757698 Msa0378890:CDS
AACGCTGTGCACAGTGTGTT+AGG 0.520352 3_1:-79757692 None:intergenic
CAAGAACATGGCAAGACCCT+TGG 0.523453 3_1:-79758047 None:intergenic
TGCTGGGACAAATGCATCAC+AGG 0.525844 3_1:+79757630 Msa0378890:CDS
TGAGCATGCTTATCATGAAA+CGG 0.531078 3_1:+79757724 Msa0378890:CDS
CTTACTGCTTGTTTGACTGA+AGG 0.539908 3_1:+79757934 Msa0378890:three_prime_UTR
ATTTCTTGTTCGTGTGCCGA+AGG 0.541962 3_1:+79758112 Msa0378890:three_prime_UTR
TTAATTAAGAAAGCACATCA+AGG 0.547393 3_1:-79757775 None:intergenic
CCGGAACTGAACTTATTCCC+AGG 0.566395 3_1:-79757657 None:intergenic
AAAGATGACTAGTCAATGCT+GGG 0.584821 3_1:+79757614 Msa0378890:CDS
GAAATTTGAAAGCAAGAACA+TGG 0.585640 3_1:-79758059 None:intergenic
AATGCATCACAGGCACGCCT+GGG 0.596603 3_1:+79757640 Msa0378890:CDS
TGTTAGGCAATTAGTCTCAC+CGG 0.596955 3_1:-79757676 None:intergenic
ATTGAGAGAGAGCGATTGAG+AGG 0.597246 3_1:-79756628 None:intergenic
TCAATTCTGCTGAAATGCAG+AGG 0.611780 3_1:+79756665 Msa0378890:CDS
AGCCATGATTAATGAAATGG+TGG 0.612893 3_1:+79757590 Msa0378890:CDS
GATATATTATCAGCTTACCA+AGG 0.625326 3_1:+79758030 Msa0378890:three_prime_UTR
CATTTCAGCAGAATTGAGGT+CGG 0.629707 3_1:-79756659 None:intergenic
GAGTATGCAATGAAGATCAA+CGG 0.630450 3_1:+79757752 Msa0378890:exon
ATTGAGAGGAGAGAGAGAGG+GGG 0.634879 3_1:-79756614 None:intergenic
ATATATTATCAGCTTACCAA+GGG 0.650187 3_1:+79758031 Msa0378890:three_prime_UTR
GATGAAAAGCTCAGTGCATG+TGG 0.677105 3_1:+79757904 Msa0378890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATATTTAAAAGTGATT+TGG + chr3_1:79757058-79757077 Msa0378890:intron 15.0%
!!! ATTTTTTTCCATAAGATAAA+GGG - chr3_1:79757179-79757198 None:intergenic 15.0%
!!! TATTTTTTTCCATAAGATAA+AGG - chr3_1:79757180-79757199 None:intergenic 15.0%
!! AAGAACAAAAATTATTAATG+TGG + chr3_1:79757986-79758005 Msa0378890:three_prime_UTR 15.0%
!! AGAACAAAAATTATTAATGT+GGG + chr3_1:79757987-79758006 Msa0378890:three_prime_UTR 15.0%
!! TTTGATATTTAAAAGTGATT+TGG + chr3_1:79757058-79757077 Msa0378890:intron 15.0%
!!! ATTTTTTTCCATAAGATAAA+GGG - chr3_1:79757179-79757198 None:intergenic 15.0%
!!! TATTTTTTTCCATAAGATAA+AGG - chr3_1:79757180-79757199 None:intergenic 15.0%
!! AAGAACAAAAATTATTAATG+TGG + chr3_1:79757986-79758005 Msa0378890:three_prime_UTR 15.0%
!! AGAACAAAAATTATTAATGT+GGG + chr3_1:79757987-79758006 Msa0378890:three_prime_UTR 15.0%
!!! TTTTTTTCCATAAGATAAAG+GGG - chr3_1:79757178-79757197 None:intergenic 20.0%
!! TCTAATAATAGTTGTAACTA+TGG + chr3_1:79757228-79757247 Msa0378890:intron 20.0%
!! ATTATCATTATTATGGCTTA+GGG + chr3_1:79757407-79757426 Msa0378890:intron 20.0%
!!! CGTTAATATTTAGCAAATTT+TGG + chr3_1:79757819-79757838 Msa0378890:three_prime_UTR 20.0%
!!! TTTTTTTCCATAAGATAAAG+GGG - chr3_1:79757178-79757197 None:intergenic 20.0%
!! TCTAATAATAGTTGTAACTA+TGG + chr3_1:79757228-79757247 Msa0378890:intron 20.0%
!! ATTATCATTATTATGGCTTA+GGG + chr3_1:79757407-79757426 Msa0378890:intron 20.0%
!!! CGTTAATATTTAGCAAATTT+TGG + chr3_1:79757819-79757838 Msa0378890:three_prime_UTR 20.0%
!!! AATGTAATCGAGTTGAAAAA+GGG - chr3_1:79756741-79756760 None:intergenic 25.0%
!!! AAATGTAATCGAGTTGAAAA+AGG - chr3_1:79756742-79756761 None:intergenic 25.0%
! AATAGTTGTAACTATGGAAT+TGG + chr3_1:79757234-79757253 Msa0378890:intron 25.0%
! CTAAGCCATAATAATGATAA+TGG - chr3_1:79757408-79757427 None:intergenic 25.0%
! CATTATCATTATTATGGCTT+AGG + chr3_1:79757406-79757425 Msa0378890:intron 25.0%
! TTATCATTATTATGGCTTAG+GGG + chr3_1:79757408-79757427 Msa0378890:intron 25.0%
! CACATATAAGTGGTATATAT+CGG - chr3_1:79757448-79757467 None:intergenic 25.0%
! AGATTGAAATACCATATAAG+TGG - chr3_1:79757488-79757507 None:intergenic 25.0%
! GTTGTTATATTTCATTACAG+GGG - chr3_1:79757532-79757551 None:intergenic 25.0%
! GGTTGTTATATTTCATTACA+GGG - chr3_1:79757533-79757552 None:intergenic 25.0%
!! TTAATTAAGAAAGCACATCA+AGG - chr3_1:79757778-79757797 None:intergenic 25.0%
! ATATATTATCAGCTTACCAA+GGG + chr3_1:79758031-79758050 Msa0378890:three_prime_UTR 25.0%
!!! AATGTAATCGAGTTGAAAAA+GGG - chr3_1:79756741-79756760 None:intergenic 25.0%
!!! AAATGTAATCGAGTTGAAAA+AGG - chr3_1:79756742-79756761 None:intergenic 25.0%
! AATAGTTGTAACTATGGAAT+TGG + chr3_1:79757234-79757253 Msa0378890:intron 25.0%
! CTAAGCCATAATAATGATAA+TGG - chr3_1:79757408-79757427 None:intergenic 25.0%
! CATTATCATTATTATGGCTT+AGG + chr3_1:79757406-79757425 Msa0378890:intron 25.0%
! TTATCATTATTATGGCTTAG+GGG + chr3_1:79757408-79757427 Msa0378890:intron 25.0%
! CACATATAAGTGGTATATAT+CGG - chr3_1:79757448-79757467 None:intergenic 25.0%
! AGATTGAAATACCATATAAG+TGG - chr3_1:79757488-79757507 None:intergenic 25.0%
! GTTGTTATATTTCATTACAG+GGG - chr3_1:79757532-79757551 None:intergenic 25.0%
! GGTTGTTATATTTCATTACA+GGG - chr3_1:79757533-79757552 None:intergenic 25.0%
!! TTAATTAAGAAAGCACATCA+AGG - chr3_1:79757778-79757797 None:intergenic 25.0%
! ATATATTATCAGCTTACCAA+GGG + chr3_1:79758031-79758050 Msa0378890:three_prime_UTR 25.0%
AGTATCTGTTAATCGTAAGA+AGG - chr3_1:79756718-79756737 None:intergenic 30.0%
TAACAGTTATCACTAAGACA+AGG - chr3_1:79756877-79756896 None:intergenic 30.0%
!! AGATTTGATTTTTCATGCTG+AGG + chr3_1:79756911-79756930 Msa0378890:intron 30.0%
! TATCAATTTTATGGTGGCTA+AGG + chr3_1:79756935-79756954 Msa0378890:intron 30.0%
!! ATAGGTTTTTAAGAGAGACA+TGG - chr3_1:79757308-79757327 None:intergenic 30.0%
!! CATAATAATGATAATGGCAG+TGG - chr3_1:79757402-79757421 None:intergenic 30.0%
CACTGCCATTATCATTATTA+TGG + chr3_1:79757400-79757419 Msa0378890:intron 30.0%
CGATATATACCACTTATATG+TGG + chr3_1:79757446-79757465 Msa0378890:intron 30.0%
ACCATATAAGTGGCATATAT+CGG - chr3_1:79757478-79757497 None:intergenic 30.0%
GGGTTGTTATATTTCATTAC+AGG - chr3_1:79757534-79757553 None:intergenic 30.0%
AAGAGCCATGATTAATGAAA+TGG + chr3_1:79757587-79757606 Msa0378890:CDS 30.0%
! TTTTATATTTTGTCGAGACG+TGG + chr3_1:79757847-79757866 Msa0378890:three_prime_UTR 30.0%
GATATATTATCAGCTTACCA+AGG + chr3_1:79758030-79758049 Msa0378890:three_prime_UTR 30.0%
GAAATTTGAAAGCAAGAACA+TGG - chr3_1:79758062-79758081 None:intergenic 30.0%
AGTATCTGTTAATCGTAAGA+AGG - chr3_1:79756718-79756737 None:intergenic 30.0%
TAACAGTTATCACTAAGACA+AGG - chr3_1:79756877-79756896 None:intergenic 30.0%
!! AGATTTGATTTTTCATGCTG+AGG + chr3_1:79756911-79756930 Msa0378890:intron 30.0%
! TATCAATTTTATGGTGGCTA+AGG + chr3_1:79756935-79756954 Msa0378890:intron 30.0%
!! ATAGGTTTTTAAGAGAGACA+TGG - chr3_1:79757308-79757327 None:intergenic 30.0%
!! CATAATAATGATAATGGCAG+TGG - chr3_1:79757402-79757421 None:intergenic 30.0%
CACTGCCATTATCATTATTA+TGG + chr3_1:79757400-79757419 Msa0378890:intron 30.0%
CGATATATACCACTTATATG+TGG + chr3_1:79757446-79757465 Msa0378890:intron 30.0%
ACCATATAAGTGGCATATAT+CGG - chr3_1:79757478-79757497 None:intergenic 30.0%
GGGTTGTTATATTTCATTAC+AGG - chr3_1:79757534-79757553 None:intergenic 30.0%
AAGAGCCATGATTAATGAAA+TGG + chr3_1:79757587-79757606 Msa0378890:CDS 30.0%
! TTTTATATTTTGTCGAGACG+TGG + chr3_1:79757847-79757866 Msa0378890:three_prime_UTR 30.0%
GATATATTATCAGCTTACCA+AGG + chr3_1:79758030-79758049 Msa0378890:three_prime_UTR 30.0%
GAAATTTGAAAGCAAGAACA+TGG - chr3_1:79758062-79758081 None:intergenic 30.0%
! TGCTGAGGCTATCAATTTTA+TGG + chr3_1:79756926-79756945 Msa0378890:intron 35.0%
! TGAGGCTATCAATTTTATGG+TGG + chr3_1:79756929-79756948 Msa0378890:intron 35.0%
ATACTGTTCTGTTAGTGCTA+AGG + chr3_1:79756998-79757017 Msa0378890:intron 35.0%
ATGTTTGACTACATTTCCGT+TGG + chr3_1:79757124-79757143 Msa0378890:intron 35.0%
! AGATAAAGGGGTCTTCTTTT+TGG - chr3_1:79757166-79757185 None:intergenic 35.0%
AAGAAGACCCCTTTATCTTA+TGG + chr3_1:79757168-79757187 Msa0378890:intron 35.0%
ACAAAGCTACAGTAGACTAT+AGG - chr3_1:79757326-79757345 None:intergenic 35.0%
! TCCGATATATGCCACTTATA+TGG + chr3_1:79757474-79757493 Msa0378890:intron 35.0%
TTTCATTACAGGGGAACAAT+AGG - chr3_1:79757523-79757542 None:intergenic 35.0%
!! TTTGTTGTTCTTCCTGCATT+TGG - chr3_1:79757569-79757588 None:intergenic 35.0%
AGCCATGATTAATGAAATGG+TGG + chr3_1:79757590-79757609 Msa0378890:CDS 35.0%
TGCCACCATTTCATTAATCA+TGG - chr3_1:79757595-79757614 None:intergenic 35.0%
! AAAGATGACTAGTCAATGCT+GGG + chr3_1:79757614-79757633 Msa0378890:CDS 35.0%
TGAGCATGCTTATCATGAAA+CGG + chr3_1:79757724-79757743 Msa0378890:CDS 35.0%
GAGTATGCAATGAAGATCAA+CGG + chr3_1:79757752-79757771 Msa0378890:exon 35.0%
TTACTGCTTGTTTGACTGAA+GGG + chr3_1:79757935-79757954 Msa0378890:three_prime_UTR 35.0%
! TGCTGAGGCTATCAATTTTA+TGG + chr3_1:79756926-79756945 Msa0378890:intron 35.0%
! TGAGGCTATCAATTTTATGG+TGG + chr3_1:79756929-79756948 Msa0378890:intron 35.0%
ATACTGTTCTGTTAGTGCTA+AGG + chr3_1:79756998-79757017 Msa0378890:intron 35.0%
ATGTTTGACTACATTTCCGT+TGG + chr3_1:79757124-79757143 Msa0378890:intron 35.0%
! AGATAAAGGGGTCTTCTTTT+TGG - chr3_1:79757166-79757185 None:intergenic 35.0%
AAGAAGACCCCTTTATCTTA+TGG + chr3_1:79757168-79757187 Msa0378890:intron 35.0%
ACAAAGCTACAGTAGACTAT+AGG - chr3_1:79757326-79757345 None:intergenic 35.0%
! TCCGATATATGCCACTTATA+TGG + chr3_1:79757474-79757493 Msa0378890:intron 35.0%
TTTCATTACAGGGGAACAAT+AGG - chr3_1:79757523-79757542 None:intergenic 35.0%
!! TTTGTTGTTCTTCCTGCATT+TGG - chr3_1:79757569-79757588 None:intergenic 35.0%
AGCCATGATTAATGAAATGG+TGG + chr3_1:79757590-79757609 Msa0378890:CDS 35.0%
TGCCACCATTTCATTAATCA+TGG - chr3_1:79757595-79757614 None:intergenic 35.0%
! AAAGATGACTAGTCAATGCT+GGG + chr3_1:79757614-79757633 Msa0378890:CDS 35.0%
TGAGCATGCTTATCATGAAA+CGG + chr3_1:79757724-79757743 Msa0378890:CDS 35.0%
GAGTATGCAATGAAGATCAA+CGG + chr3_1:79757752-79757771 Msa0378890:exon 35.0%
TTACTGCTTGTTTGACTGAA+GGG + chr3_1:79757935-79757954 Msa0378890:three_prime_UTR 35.0%
TTGTGCTGTGTTCGTTCATT+AGG + chr3_1:79756565-79756584 Msa0378890:five_prime_UTR 40.0%
TGTGCTGTGTTCGTTCATTA+GGG + chr3_1:79756566-79756585 Msa0378890:five_prime_UTR 40.0%
CATTTCAGCAGAATTGAGGT+CGG - chr3_1:79756662-79756681 None:intergenic 40.0%
TCTGCATTTCAGCAGAATTG+AGG - chr3_1:79756666-79756685 None:intergenic 40.0%
TCAATTCTGCTGAAATGCAG+AGG + chr3_1:79756665-79756684 Msa0378890:CDS 40.0%
! ACATTTCCGTTGGTTAGACT+TGG + chr3_1:79757134-79757153 Msa0378890:intron 40.0%
AATCGACCAAGTCTAACCAA+CGG - chr3_1:79757143-79757162 None:intergenic 40.0%
ATGGAATTGGTACCCAAACA+CGG + chr3_1:79757247-79757266 Msa0378890:intron 40.0%
ATTATCTTCCCTCCGTGTTT+GGG - chr3_1:79757262-79757281 None:intergenic 40.0%
TATTATCTTCCCTCCGTGTT+TGG - chr3_1:79757263-79757282 None:intergenic 40.0%
TATGGCTTAGGGGATCTAAA+TGG + chr3_1:79757418-79757437 Msa0378890:intron 40.0%
CGGAATATGCCACATATAAG+TGG - chr3_1:79757458-79757477 None:intergenic 40.0%
GCATTTGGAGGGCAAAATTA+GGG - chr3_1:79757554-79757573 None:intergenic 40.0%
TGCATTTGGAGGGCAAAATT+AGG - chr3_1:79757555-79757574 None:intergenic 40.0%
! TAATTTTGCCCTCCAAATGC+AGG + chr3_1:79757554-79757573 Msa0378890:intron 40.0%
TTGTTCTTCCTGCATTTGGA+GGG - chr3_1:79757565-79757584 None:intergenic 40.0%
! CAAAGATGACTAGTCAATGC+TGG + chr3_1:79757613-79757632 Msa0378890:CDS 40.0%
! TGTTAGGCAATTAGTCTCAC+CGG - chr3_1:79757679-79757698 None:intergenic 40.0%
CTTACTGCTTGTTTGACTGA+AGG + chr3_1:79757934-79757953 Msa0378890:three_prime_UTR 40.0%
TTGTGCTGTGTTCGTTCATT+AGG + chr3_1:79756565-79756584 Msa0378890:five_prime_UTR 40.0%
TGTGCTGTGTTCGTTCATTA+GGG + chr3_1:79756566-79756585 Msa0378890:five_prime_UTR 40.0%
CATTTCAGCAGAATTGAGGT+CGG - chr3_1:79756662-79756681 None:intergenic 40.0%
TCTGCATTTCAGCAGAATTG+AGG - chr3_1:79756666-79756685 None:intergenic 40.0%
TCAATTCTGCTGAAATGCAG+AGG + chr3_1:79756665-79756684 Msa0378890:CDS 40.0%
! ACATTTCCGTTGGTTAGACT+TGG + chr3_1:79757134-79757153 Msa0378890:intron 40.0%
AATCGACCAAGTCTAACCAA+CGG - chr3_1:79757143-79757162 None:intergenic 40.0%
ATGGAATTGGTACCCAAACA+CGG + chr3_1:79757247-79757266 Msa0378890:intron 40.0%
ATTATCTTCCCTCCGTGTTT+GGG - chr3_1:79757262-79757281 None:intergenic 40.0%
TATTATCTTCCCTCCGTGTT+TGG - chr3_1:79757263-79757282 None:intergenic 40.0%
TATGGCTTAGGGGATCTAAA+TGG + chr3_1:79757418-79757437 Msa0378890:intron 40.0%
CGGAATATGCCACATATAAG+TGG - chr3_1:79757458-79757477 None:intergenic 40.0%
GCATTTGGAGGGCAAAATTA+GGG - chr3_1:79757554-79757573 None:intergenic 40.0%
TGCATTTGGAGGGCAAAATT+AGG - chr3_1:79757555-79757574 None:intergenic 40.0%
! TAATTTTGCCCTCCAAATGC+AGG + chr3_1:79757554-79757573 Msa0378890:intron 40.0%
TTGTTCTTCCTGCATTTGGA+GGG - chr3_1:79757565-79757584 None:intergenic 40.0%
! CAAAGATGACTAGTCAATGC+TGG + chr3_1:79757613-79757632 Msa0378890:CDS 40.0%
! TGTTAGGCAATTAGTCTCAC+CGG - chr3_1:79757679-79757698 None:intergenic 40.0%
CTTACTGCTTGTTTGACTGA+AGG + chr3_1:79757934-79757953 Msa0378890:three_prime_UTR 40.0%
ATTGAGAGAGAGCGATTGAG+AGG - chr3_1:79756631-79756650 None:intergenic 45.0%
TCTCAATCGCTCTCTCTCAA+TGG + chr3_1:79756630-79756649 Msa0378890:exon 45.0%
!!! TGCTAAGGCCAGTTGGTTTT+TGG + chr3_1:79757013-79757032 Msa0378890:intron 45.0%
!!! TAAGGCCAGTTGGTTTTTGG+AGG + chr3_1:79757016-79757035 Msa0378890:intron 45.0%
!!! AAGGCCAGTTGGTTTTTGGA+GGG + chr3_1:79757017-79757036 Msa0378890:intron 45.0%
! ATTTGGTTCACTTCAGCTGC+TGG + chr3_1:79757075-79757094 Msa0378890:intron 45.0%
AATTGGTACCCAAACACGGA+GGG + chr3_1:79757251-79757270 Msa0378890:intron 45.0%
AAGAGAGACATGGCAAACAG+TGG - chr3_1:79757298-79757317 None:intergenic 45.0%
GTTGTTCTTCCTGCATTTGG+AGG - chr3_1:79757566-79757585 None:intergenic 45.0%
CCTGGGAATAAGTTCAGTTC+CGG + chr3_1:79757657-79757676 Msa0378890:CDS 45.0%
GATGAAAAGCTCAGTGCATG+TGG + chr3_1:79757904-79757923 Msa0378890:three_prime_UTR 45.0%
ATTTCTTGTTCGTGTGCCGA+AGG + chr3_1:79758112-79758131 Msa0378890:three_prime_UTR 45.0%
ATTGAGAGAGAGCGATTGAG+AGG - chr3_1:79756631-79756650 None:intergenic 45.0%
TCTCAATCGCTCTCTCTCAA+TGG + chr3_1:79756630-79756649 Msa0378890:exon 45.0%
!!! TGCTAAGGCCAGTTGGTTTT+TGG + chr3_1:79757013-79757032 Msa0378890:intron 45.0%
!!! TAAGGCCAGTTGGTTTTTGG+AGG + chr3_1:79757016-79757035 Msa0378890:intron 45.0%
!!! AAGGCCAGTTGGTTTTTGGA+GGG + chr3_1:79757017-79757036 Msa0378890:intron 45.0%
! ATTTGGTTCACTTCAGCTGC+TGG + chr3_1:79757075-79757094 Msa0378890:intron 45.0%
AATTGGTACCCAAACACGGA+GGG + chr3_1:79757251-79757270 Msa0378890:intron 45.0%
AAGAGAGACATGGCAAACAG+TGG - chr3_1:79757298-79757317 None:intergenic 45.0%
GTTGTTCTTCCTGCATTTGG+AGG - chr3_1:79757566-79757585 None:intergenic 45.0%
CCTGGGAATAAGTTCAGTTC+CGG + chr3_1:79757657-79757676 Msa0378890:CDS 45.0%
GATGAAAAGCTCAGTGCATG+TGG + chr3_1:79757904-79757923 Msa0378890:three_prime_UTR 45.0%
ATTTCTTGTTCGTGTGCCGA+AGG + chr3_1:79758112-79758131 Msa0378890:three_prime_UTR 45.0%
ATTGAGAGGAGAGAGAGAGG+GGG - chr3_1:79756617-79756636 None:intergenic 50.0%
GATTGAGAGGAGAGAGAGAG+GGG - chr3_1:79756618-79756637 None:intergenic 50.0%
CGATTGAGAGGAGAGAGAGA+GGG - chr3_1:79756619-79756638 None:intergenic 50.0%
CTGTTAGTGCTAAGGCCAGT+TGG + chr3_1:79757006-79757025 Msa0378890:intron 50.0%
!!! AGGCCAGTTGGTTTTTGGAG+GGG + chr3_1:79757018-79757037 Msa0378890:intron 50.0%
!!! CAGTTGGTTTTTGGAGGGGA+CGG + chr3_1:79757022-79757041 Msa0378890:intron 50.0%
GAATTGGTACCCAAACACGG+AGG + chr3_1:79757250-79757269 Msa0378890:intron 50.0%
TGCTGGGACAAATGCATCAC+AGG + chr3_1:79757630-79757649 Msa0378890:CDS 50.0%
CCGGAACTGAACTTATTCCC+AGG - chr3_1:79757660-79757679 None:intergenic 50.0%
AACGCTGTGCACAGTGTGTT+AGG - chr3_1:79757695-79757714 None:intergenic 50.0%
ACACTGTGCACAGCGTTACA+TGG + chr3_1:79757698-79757717 Msa0378890:CDS 50.0%
CAAGAACATGGCAAGACCCT+TGG - chr3_1:79758050-79758069 None:intergenic 50.0%
ATTGAGAGGAGAGAGAGAGG+GGG - chr3_1:79756617-79756636 None:intergenic 50.0%
GATTGAGAGGAGAGAGAGAG+GGG - chr3_1:79756618-79756637 None:intergenic 50.0%
CGATTGAGAGGAGAGAGAGA+GGG - chr3_1:79756619-79756638 None:intergenic 50.0%
CTGTTAGTGCTAAGGCCAGT+TGG + chr3_1:79757006-79757025 Msa0378890:intron 50.0%
!!! AGGCCAGTTGGTTTTTGGAG+GGG + chr3_1:79757018-79757037 Msa0378890:intron 50.0%
!!! CAGTTGGTTTTTGGAGGGGA+CGG + chr3_1:79757022-79757041 Msa0378890:intron 50.0%
GAATTGGTACCCAAACACGG+AGG + chr3_1:79757250-79757269 Msa0378890:intron 50.0%
TGCTGGGACAAATGCATCAC+AGG + chr3_1:79757630-79757649 Msa0378890:CDS 50.0%
CCGGAACTGAACTTATTCCC+AGG - chr3_1:79757660-79757679 None:intergenic 50.0%
AACGCTGTGCACAGTGTGTT+AGG - chr3_1:79757695-79757714 None:intergenic 50.0%
ACACTGTGCACAGCGTTACA+TGG + chr3_1:79757698-79757717 Msa0378890:CDS 50.0%
CAAGAACATGGCAAGACCCT+TGG - chr3_1:79758050-79758069 None:intergenic 50.0%
GCGATTGAGAGGAGAGAGAG+AGG - chr3_1:79756620-79756639 None:intergenic 55.0%
CGTCCCCTCCAAAAACCAAC+TGG - chr3_1:79757024-79757043 None:intergenic 55.0%
!! GTTTTTGGAGGGGACGGCTA+AGG + chr3_1:79757028-79757047 Msa0378890:intron 55.0%
AAATGCATCACAGGCACGCC+TGG + chr3_1:79757639-79757658 Msa0378890:CDS 55.0%
AATGCATCACAGGCACGCCT+GGG + chr3_1:79757640-79757659 Msa0378890:CDS 55.0%
GCGATTGAGAGGAGAGAGAG+AGG - chr3_1:79756620-79756639 None:intergenic 55.0%
CGTCCCCTCCAAAAACCAAC+TGG - chr3_1:79757024-79757043 None:intergenic 55.0%
!! GTTTTTGGAGGGGACGGCTA+AGG + chr3_1:79757028-79757047 Msa0378890:intron 55.0%
AAATGCATCACAGGCACGCC+TGG + chr3_1:79757639-79757658 Msa0378890:CDS 55.0%
AATGCATCACAGGCACGCCT+GGG + chr3_1:79757640-79757659 Msa0378890:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79756553 79758140 79756553 ID=Msa0378890;Name=Msa0378890
chr3_1 mRNA 79756553 79758140 79756553 ID=Msa0378890-mRNA-1;Parent=Msa0378890;Name=Msa0378890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|1|1|1|1|1|2|376|78
chr3_1 exon 79756553 79756696 79756553 ID=Msa0378890-mRNA-1:exon:19683;Parent=Msa0378890-mRNA-1
chr3_1 exon 79757576 79758140 79757576 ID=Msa0378890-mRNA-1:exon:19684;Parent=Msa0378890-mRNA-1
chr3_1 five_prime_UTR 79756553 79756648 79756553 ID=Msa0378890-mRNA-1:five_prime_utr;Parent=Msa0378890-mRNA-1
chr3_1 CDS 79756649 79756696 79756649 ID=Msa0378890-mRNA-1:cds;Parent=Msa0378890-mRNA-1
chr3_1 CDS 79757576 79757764 79757576 ID=Msa0378890-mRNA-1:cds;Parent=Msa0378890-mRNA-1
chr3_1 three_prime_UTR 79757765 79758140 79757765 ID=Msa0378890-mRNA-1:three_prime_utr;Parent=Msa0378890-mRNA-1
Gene Sequence

>Msa0378890

ATGGATCTTTCCGACCTCAATTCTGCTGAAATGCAGAGGTTTTACTCTGAAGAACAACAAAGAGCCATGATTAATGAAATGGTGGCAAAGATGACTAGTCAATGCTGGGACAAATGCATCACAGGCACGCCTGGGAATAAGTTCAGTTCCGGTGAGACTAATTGCCTAACACACTGTGCACAGCGTTACATGGAGATGAGCATGCTTATCATGAAACGGTTTCAGAGTATGCAATGA
Protein sequence

>Msa0378890

MDLSDLNSAEMQRFYSEEQQRAMINEMVAKMTSQCWDKCITGTPGNKFSSGETNCLTHCAQRYMEMSMLIMKRFQSMQ*