AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379020 MtrunA17_Chr3g0132061 91.901 284 18 2 34 317 24 302 8.32e-117 339
Msa0379020 MtrunA17_Chr3g0132051 68.070 285 50 4 33 317 23 266 1.41e-97 288
Msa0379020 MtrunA17_Chr8g0386231 55.326 291 95 8 43 317 50 321 1.69e-79 244
Msa0379020 MtrunA17_Chr4g0001151 87.413 143 14 1 34 176 158 296 2.59e-60 195
Msa0379020 MtrunA17_Chr2g0290471 47.826 276 104 6 43 317 33 269 1.14e-47 161
Msa0379020 MtrunA17_Chr3g0128091 35.161 310 164 7 15 316 3 283 1.07e-37 135
Msa0379020 MtrunA17_Chr3g0094841 32.967 273 119 8 46 317 28 237 2.59e-32 120
Msa0379020 MtrunA17_Chr5g0429111 37.654 162 88 3 47 206 56 206 5.55e-28 110
Msa0379020 MtrunA17_Chr4g0028461 30.070 286 155 8 47 317 69 324 4.80e-27 108
Msa0379020 MtrunA17_Chr1g0180631 31.609 348 171 9 20 317 3 333 9.73e-26 104
Msa0379020 MtrunA17_Chr2g0327311 32.716 162 104 1 43 199 64 225 9.82e-23 96.7
Msa0379020 MtrunA17_Chr7g0264601 27.647 340 173 8 46 317 15 349 8.20e-21 91.3
Msa0379020 MtrunA17_Chr8g0343041 46.774 62 33 0 145 206 77 138 3.31e-12 65.9
Msa0379020 MtrunA17_Chr6g0454851 49.254 67 33 1 43 109 17 82 8.77e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379020 AT5G50740.5 46.739 276 122 4 46 317 29 283 4.19e-71 222
Msa0379020 AT5G50740.1 46.739 276 122 4 46 317 29 283 4.19e-71 222
Msa0379020 AT5G50740.3 46.739 276 122 4 46 317 36 290 7.92e-71 221
Msa0379020 AT5G63530.2 68.902 164 50 1 45 207 59 222 1.15e-61 199
Msa0379020 AT5G63530.1 68.902 164 50 1 45 207 74 237 1.94e-61 199
Msa0379020 AT5G50740.2 58.197 122 51 0 46 167 29 150 1.03e-42 145
Msa0379020 AT5G50740.4 58.197 122 51 0 46 167 36 157 1.93e-42 144
Msa0379020 AT3G02960.1 32.177 317 144 8 1 317 1 246 3.37e-42 146
Msa0379020 AT5G24580.2 30.847 295 146 6 46 316 57 317 1.98e-33 125
Msa0379020 AT5G24580.4 30.847 295 146 6 46 316 58 318 2.46e-33 125
Msa0379020 AT5G24580.1 30.847 295 146 6 46 316 58 318 2.46e-33 125
Msa0379020 AT5G24580.3 29.831 295 146 7 46 316 58 315 6.75e-30 116
Msa0379020 AT2G36950.1 32.840 338 158 12 46 317 52 386 7.91e-28 111
Msa0379020 AT5G03380.1 27.778 396 182 12 20 317 3 392 9.10e-25 103
Msa0379020 AT5G24580.5 29.545 264 128 6 77 316 2 231 1.19e-23 97.4
Msa0379020 AT5G03380.2 27.717 368 165 11 48 317 1 365 2.41e-23 99.0
Msa0379020 AT1G29000.1 33.750 160 103 2 49 206 20 178 1.33e-21 92.8
Msa0379020 AT1G29000.2 33.750 160 103 2 49 206 20 178 1.33e-21 92.8
Msa0379020 AT5G60800.1 29.310 174 110 3 42 204 24 195 1.40e-13 70.5
Msa0379020 AT5G60800.2 29.310 174 110 3 42 204 24 195 2.21e-13 70.1

Find 90 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATGCATGTGAACTTTA+AGG 0.123803 3_1:+79899326 None:intergenic
TATGCAGGATATCCAATTTC+TGG 0.228734 3_1:+79898271 None:intergenic
AGCAGAGCCATTGAAGGTTT+TGG 0.240236 3_1:-79899599 Msa0379020:CDS
TCTTCTTTCTTCTCCTCTTC+AGG 0.262478 3_1:+79899478 None:intergenic
TTGTATGCATACCCAGAAAT+TGG 0.264045 3_1:-79898283 Msa0379020:CDS
TACTCTGCTGCTGAGATTAC+AGG 0.320470 3_1:+79900023 None:intergenic
CAAAGATTGTACTGGAAATC+TGG 0.324354 3_1:-79898125 Msa0379020:three_prime_UTR
CACATGACACTGCACGCATT+TGG 0.330281 3_1:+79898172 None:intergenic
GAATATGTGTACAAGAGAAT+TGG 0.337745 3_1:-79898526 Msa0379020:CDS
TTTCTCCTCTTCTTGTGGCT+TGG 0.353064 3_1:+79898384 None:intergenic
GGCGCCGGTGGCGGTGGTGG+AGG 0.378419 3_1:+79898217 None:intergenic
GAGTTCAGAAGAAGAGTCAT+AGG 0.384792 3_1:-79899573 Msa0379020:CDS
TGTGGCGCCGGTGGCGGTGG+TGG 0.385547 3_1:+79898214 None:intergenic
ACATGACACTGCACGCATTT+GGG 0.396441 3_1:+79898173 None:intergenic
ACATATTCAACCAGCATTGT+TGG 0.400300 3_1:+79898541 None:intergenic
AATATGTGTACAAGAGAATT+GGG 0.410323 3_1:-79898525 Msa0379020:CDS
ATTTGTGGCGCCGGTGGCGG+TGG 0.411514 3_1:+79898211 None:intergenic
TTGACTCGCAGGAGTGGAAT+TGG 0.430688 3_1:-79898614 Msa0379020:intron
AACACCTGGAAAATCTTTCA+AGG 0.431319 3_1:+79899675 None:intergenic
ATCTCTGCCGGAGGCGGTGG+AGG 0.439963 3_1:+79899751 None:intergenic
GCGCCGGTGGCGGTGGTGGA+GGG 0.441430 3_1:+79898218 None:intergenic
TTTCCTCCTCAGGAGCAGTT+GGG 0.442294 3_1:+79899527 None:intergenic
TTCTCATCACTGAACATTTG+TGG 0.463049 3_1:+79898196 None:intergenic
AACAGATTGCAAATCTCATA+TGG 0.468470 3_1:-79899641 Msa0379020:CDS
GCTTCTTTCTCCTCTTCTTG+TGG 0.477080 3_1:+79898379 None:intergenic
GAAGGAAGAGAAAGTGGAGG+AGG 0.477809 3_1:-79898485 Msa0379020:CDS
AACATTTGTGGCGCCGGTGG+CGG 0.479452 3_1:+79898208 None:intergenic
ATAATCTCTGCCGGAGGCGG+TGG 0.484381 3_1:+79899748 None:intergenic
TGAGCATGATAGTAAGCAGC+TGG 0.486591 3_1:+79898247 None:intergenic
AGCATAATCTCTGCCGGAGG+CGG 0.487601 3_1:+79899745 None:intergenic
TGATGTTCCTCCACCGCCTC+CGG 0.487719 3_1:-79899758 Msa0379020:CDS
AGAAACATCAAAGATTGTAC+TGG 0.488450 3_1:-79898133 Msa0379020:three_prime_UTR
ACTCTCTCCAAAACCTTCAA+TGG 0.491679 3_1:+79899592 None:intergenic
TGTATACTTTCTGTTGAAGT+GGG 0.491737 3_1:-79897987 Msa0379020:three_prime_UTR
AGAGAAAGCAGAGCCATTGA+AGG 0.492377 3_1:-79899605 Msa0379020:CDS
AGAGGAGAAAGTTGAAGAAG+TGG 0.492702 3_1:-79898437 Msa0379020:CDS
AGAAGAGACAAATGTGGAAG+AGG 0.493464 3_1:-79898347 Msa0379020:CDS
TAGTAAGCAGCTGGGTATGC+AGG 0.497299 3_1:+79898256 None:intergenic
ATGCAGGATATCCAATTTCT+GGG 0.498068 3_1:+79898272 None:intergenic
GATCATGAAGGAAGAGAAAG+TGG 0.506766 3_1:-79898491 Msa0379020:CDS
TCTTTCAATACCTCGCCCAT+TGG 0.512665 3_1:+79899993 None:intergenic
TAAAGAAGAAGGAGAGGGTG+AGG 0.520661 3_1:-79898407 Msa0379020:CDS
AACTCTGAGGTAAGTGTGAA+GGG 0.521530 3_1:-79898574 Msa0379020:CDS
GCAGAGTAACTAACACCAAT+GGG 0.522167 3_1:-79900008 Msa0379020:exon
TGAGGCCAAGCCACAAGAAG+AGG 0.523115 3_1:-79898389 Msa0379020:CDS
TTGTATACTTTCTGTTGAAG+TGG 0.524186 3_1:-79897988 Msa0379020:three_prime_UTR
CTGAACATTTGTGGCGCCGG+TGG 0.526503 3_1:+79898205 None:intergenic
GTGGCTGAGAATAAAGAAGA+AGG 0.526744 3_1:-79898418 Msa0379020:CDS
TCCTCAGGAGCAGTTGGGAT+CGG 0.529318 3_1:+79899532 None:intergenic
ATACCCTCCACCACCGCCAC+CGG 0.533504 3_1:-79898221 Msa0379020:CDS
TCTCATATGGTGGTTGTGAA+AGG 0.544258 3_1:-79899628 Msa0379020:CDS
TCCGATCCCAACTGCTCCTG+AGG 0.547732 3_1:-79899533 Msa0379020:CDS
TGAGAATAAAGAAGAAGGAG+AGG 0.548774 3_1:-79898413 Msa0379020:CDS
ACTTTCAGCATAATCTCTGC+CGG 0.558570 3_1:+79899739 None:intergenic
TCACTGAACATTTGTGGCGC+CGG 0.561801 3_1:+79898202 None:intergenic
AGCAGAGTAACTAACACCAA+TGG 0.563916 3_1:-79900009 Msa0379020:exon
TGGGTATGCATACAAATCCA+TGG 0.565942 3_1:+79898291 None:intergenic
AAAAGTTGCTGAGGAAGAGA+AGG 0.566341 3_1:-79899506 Msa0379020:CDS
GAACTCTGAGGTAAGTGTGA+AGG 0.574142 3_1:-79898575 Msa0379020:CDS
TTAAGAGTATACTCTACAGA+TGG 0.576478 3_1:-79898038 Msa0379020:three_prime_UTR
CATGCATTGTGAAGCTTGTG+CGG 0.582190 3_1:-79899314 Msa0379020:CDS
ACTCGCAGGAGTGGAATTGG+TGG 0.583118 3_1:-79898611 Msa0379020:intron
AGAGAAGGCTGCACCTGAAG+AGG 0.583611 3_1:-79899491 Msa0379020:CDS
TATGCATACAAATCCATGGA+TGG 0.594682 3_1:+79898295 None:intergenic
TGCATTGTGAAAGCTGTGCT+CGG 0.595120 3_1:-79899711 Msa0379020:CDS
ATACTACTATAATCCATCCA+TGG 0.596587 3_1:-79898308 Msa0379020:CDS
TTAGGAAGAGAAGAAAACAG+AGG 0.601871 3_1:-79899860 Msa0379020:intron
GAGAATAAAGAAGAAGGAGA+GGG 0.601967 3_1:-79898412 Msa0379020:CDS
GTTATCACATCTTCAACACC+TGG 0.604591 3_1:+79899661 None:intergenic
CTCTGAGGTAAGTGTGAAGG+GGG 0.606360 3_1:-79898572 Msa0379020:CDS
GGAAGAAGAAACCAAGCCAG+AGG 0.606884 3_1:-79899797 Msa0379020:CDS
GATCCCAACTGCTCCTGAGG+AGG 0.607543 3_1:-79899530 Msa0379020:CDS
CATGAAGGAAGAGAAAGTGG+AGG 0.610980 3_1:-79898488 Msa0379020:CDS
AGAGGAAAGTAAGACAGAGG+AGG 0.613057 3_1:-79899842 Msa0379020:CDS
TCAGAAGAAGAGTCATAGGA+AGG 0.616480 3_1:-79899569 Msa0379020:CDS
GTAACTAACACCAATGGGCG+AGG 0.617267 3_1:-79900003 Msa0379020:intron
GGTGTATGATCCAACAATGC+TGG 0.619988 3_1:-79898551 Msa0379020:CDS
TGAAGAGGAGAAGAAAGAAG+AGG 0.625518 3_1:-79899476 Msa0379020:intron
AGGACAACAATCACAATCTG+AGG 0.626532 3_1:+79899346 None:intergenic
AACAGAGGAAAGTAAGACAG+AGG 0.628055 3_1:-79899845 Msa0379020:CDS
GGAGGAGGAAGCCAAAGCCG+AGG 0.633720 3_1:-79898470 Msa0379020:CDS
GAAGCATGCAGTGATCATGA+AGG 0.653325 3_1:-79898503 Msa0379020:CDS
TACTGTAGAAGAGACAAATG+TGG 0.655441 3_1:-79898353 Msa0379020:CDS
GCTGTGCTCGGAAAGTTCGT+CGG 0.656979 3_1:-79899699 Msa0379020:CDS
GAGCATGATAGTAAGCAGCT+GGG 0.661089 3_1:+79898248 None:intergenic
ACTCTGAGGTAAGTGTGAAG+GGG 0.663378 3_1:-79898573 Msa0379020:CDS
TTCAGCATAATCTCTGCCGG+AGG 0.675417 3_1:+79899742 None:intergenic
AGATTGCAAATCTCATATGG+TGG 0.675547 3_1:-79899638 Msa0379020:CDS
AACTGATCTGAAGAACTCTG+AGG 0.714880 3_1:-79898587 Msa0379020:CDS
GCATTGTGAAGCTTGTGCGG+AGG 0.759739 3_1:-79899311 Msa0379020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATTTCATTTATCTA+TGG - chr3_1:79898141-79898160 Msa0379020:three_prime_UTR 10.0%
!!! TTAAATTTTGTATATTTAGA+AGG + chr3_1:79900002-79900021 None:intergenic 10.0%
!!! AATTTAATTTCATTTATCTA+TGG - chr3_1:79898141-79898160 Msa0379020:three_prime_UTR 10.0%
!!! TTAAATTTTGTATATTTAGA+AGG + chr3_1:79900002-79900021 None:intergenic 10.0%
!! ATAAAAGAGAAGTTAAATAT+TGG + chr3_1:79898808-79898827 None:intergenic 15.0%
!!! TCAGTTTTTTTTTTTTACTA+TGG - chr3_1:79899020-79899039 Msa0379020:intron 15.0%
!!! TTTTTTTTTTTTACTATGGT+AGG - chr3_1:79899024-79899043 Msa0379020:intron 15.0%
!!! ATTGTATAATCTTATTTAGT+AGG - chr3_1:79899359-79899378 Msa0379020:intron 15.0%
!!! TTGTATAATCTTATTTAGTA+GGG - chr3_1:79899360-79899379 Msa0379020:intron 15.0%
!! ATAAAAGAGAAGTTAAATAT+TGG + chr3_1:79898808-79898827 None:intergenic 15.0%
!!! TCAGTTTTTTTTTTTTACTA+TGG - chr3_1:79899020-79899039 Msa0379020:intron 15.0%
!!! TTTTTTTTTTTTACTATGGT+AGG - chr3_1:79899024-79899043 Msa0379020:intron 15.0%
!!! ATTGTATAATCTTATTTAGT+AGG - chr3_1:79899359-79899378 Msa0379020:intron 15.0%
!!! TTGTATAATCTTATTTAGTA+GGG - chr3_1:79899360-79899379 Msa0379020:intron 15.0%
!!! CTTTTATTTACAAAATCAGA+TGG - chr3_1:79898821-79898840 Msa0379020:intron 20.0%
!! ACTTAACTAACAAATTCAAT+TGG - chr3_1:79898885-79898904 Msa0379020:intron 20.0%
!! ACAAATTCAATTGGTTAATT+TGG - chr3_1:79898894-79898913 Msa0379020:intron 20.0%
!! ATGGTTAAATCAATTTAATC+CGG + chr3_1:79898947-79898966 None:intergenic 20.0%
!!! ATTGACTTACAAAGAAAAAA+CGG + chr3_1:79898981-79899000 None:intergenic 20.0%
!! AATTATGTGATTTAATTGAC+CGG - chr3_1:79899154-79899173 Msa0379020:intron 20.0%
!!! AACTAATGTTTTAACAAACT+CGG + chr3_1:79899296-79899315 None:intergenic 20.0%
!!! TGTATAATCTTATTTAGTAG+GGG - chr3_1:79899361-79899380 Msa0379020:intron 20.0%
!! ATTATTATTGAAATAAGCAG+TGG - chr3_1:79899397-79899416 Msa0379020:intron 20.0%
!!! CTTTTATTTACAAAATCAGA+TGG - chr3_1:79898821-79898840 Msa0379020:intron 20.0%
!! ACTTAACTAACAAATTCAAT+TGG - chr3_1:79898885-79898904 Msa0379020:intron 20.0%
!! ACAAATTCAATTGGTTAATT+TGG - chr3_1:79898894-79898913 Msa0379020:intron 20.0%
!! ATGGTTAAATCAATTTAATC+CGG + chr3_1:79898947-79898966 None:intergenic 20.0%
!!! ATTGACTTACAAAGAAAAAA+CGG + chr3_1:79898981-79899000 None:intergenic 20.0%
!! AATTATGTGATTTAATTGAC+CGG - chr3_1:79899154-79899173 Msa0379020:intron 20.0%
!!! AACTAATGTTTTAACAAACT+CGG + chr3_1:79899296-79899315 None:intergenic 20.0%
!!! TGTATAATCTTATTTAGTAG+GGG - chr3_1:79899361-79899380 Msa0379020:intron 20.0%
!! ATTATTATTGAAATAAGCAG+TGG - chr3_1:79899397-79899416 Msa0379020:intron 20.0%
! AAACGGATACTAAAAATGAA+TGG - chr3_1:79898776-79898795 Msa0379020:intron 25.0%
! AAGAGAAGTTAAATATTGGA+CGG + chr3_1:79898804-79898823 None:intergenic 25.0%
!! GGATTAAATTGATTTAACCA+TGG - chr3_1:79898946-79898965 Msa0379020:intron 25.0%
!! TAAATTGATTTAACCATGGT+TGG - chr3_1:79898950-79898969 Msa0379020:intron 25.0%
! GACTTAGTATAGTAAAAAAC+CGG + chr3_1:79899213-79899232 None:intergenic 25.0%
! AATTTGATTCAGCATTCAAT+TGG + chr3_1:79899334-79899353 None:intergenic 25.0%
! AATATGTGTACAAGAGAATT+GGG - chr3_1:79899531-79899550 Msa0379020:CDS 25.0%
! AAAGAAGGCAAAAACAAAAT+AGG + chr3_1:79899971-79899990 None:intergenic 25.0%
! TAGAAGGAATTGAAAAAAGA+AGG + chr3_1:79899986-79900005 None:intergenic 25.0%
! AAACGGATACTAAAAATGAA+TGG - chr3_1:79898776-79898795 Msa0379020:intron 25.0%
! AAGAGAAGTTAAATATTGGA+CGG + chr3_1:79898804-79898823 None:intergenic 25.0%
!! GGATTAAATTGATTTAACCA+TGG - chr3_1:79898946-79898965 Msa0379020:intron 25.0%
!! TAAATTGATTTAACCATGGT+TGG - chr3_1:79898950-79898969 Msa0379020:intron 25.0%
! GACTTAGTATAGTAAAAAAC+CGG + chr3_1:79899213-79899232 None:intergenic 25.0%
! AATTTGATTCAGCATTCAAT+TGG + chr3_1:79899334-79899353 None:intergenic 25.0%
! AATATGTGTACAAGAGAATT+GGG - chr3_1:79899531-79899550 Msa0379020:CDS 25.0%
! AAAGAAGGCAAAAACAAAAT+AGG + chr3_1:79899971-79899990 None:intergenic 25.0%
! TAGAAGGAATTGAAAAAAGA+AGG + chr3_1:79899986-79900005 None:intergenic 25.0%
AACAGATTGCAAATCTCATA+TGG - chr3_1:79898415-79898434 Msa0379020:CDS 30.0%
! AGAAAAAAAGCATAACTCCA+CGG + chr3_1:79898681-79898700 None:intergenic 30.0%
TTTGTAAGTCAATTATAGCG+CGG - chr3_1:79898988-79899007 Msa0379020:intron 30.0%
ACCAATGTAATTATTACGCA+CGG - chr3_1:79899082-79899101 Msa0379020:intron 30.0%
GCATAATGATTTAATTGGTC+CGG + chr3_1:79899176-79899195 None:intergenic 30.0%
ACCAATTAAATCATTATGCG+CGG - chr3_1:79899177-79899196 Msa0379020:intron 30.0%
GAATATGTGTACAAGAGAAT+TGG - chr3_1:79899530-79899549 Msa0379020:CDS 30.0%
ATACTACTATAATCCATCCA+TGG - chr3_1:79899748-79899767 Msa0379020:CDS 30.0%
AGAAACATCAAAGATTGTAC+TGG - chr3_1:79899923-79899942 Msa0379020:intron 30.0%
! TTAAGAGTATACTCTACAGA+TGG - chr3_1:79900018-79900037 Msa0379020:five_prime_UTR 30.0%
TTGTATACTTTCTGTTGAAG+TGG - chr3_1:79900068-79900087 Msa0379020:five_prime_UTR 30.0%
TGTATACTTTCTGTTGAAGT+GGG - chr3_1:79900069-79900088 Msa0379020:five_prime_UTR 30.0%
AACAGATTGCAAATCTCATA+TGG - chr3_1:79898415-79898434 Msa0379020:CDS 30.0%
! AGAAAAAAAGCATAACTCCA+CGG + chr3_1:79898681-79898700 None:intergenic 30.0%
TTTGTAAGTCAATTATAGCG+CGG - chr3_1:79898988-79899007 Msa0379020:intron 30.0%
ACCAATGTAATTATTACGCA+CGG - chr3_1:79899082-79899101 Msa0379020:intron 30.0%
GCATAATGATTTAATTGGTC+CGG + chr3_1:79899176-79899195 None:intergenic 30.0%
ACCAATTAAATCATTATGCG+CGG - chr3_1:79899177-79899196 Msa0379020:intron 30.0%
GAATATGTGTACAAGAGAAT+TGG - chr3_1:79899530-79899549 Msa0379020:CDS 30.0%
ATACTACTATAATCCATCCA+TGG - chr3_1:79899748-79899767 Msa0379020:CDS 30.0%
AGAAACATCAAAGATTGTAC+TGG - chr3_1:79899923-79899942 Msa0379020:intron 30.0%
! TTAAGAGTATACTCTACAGA+TGG - chr3_1:79900018-79900037 Msa0379020:five_prime_UTR 30.0%
TTGTATACTTTCTGTTGAAG+TGG - chr3_1:79900068-79900087 Msa0379020:five_prime_UTR 30.0%
TTAGGAAGAGAAGAAAACAG+AGG - chr3_1:79898196-79898215 Msa0379020:CDS 35.0%
AAAAAACAGAGGAACCGAAA+AGG - chr3_1:79898237-79898256 Msa0379020:CDS 35.0%
AAAAACAGAGGAACCGAAAA+GGG - chr3_1:79898238-79898257 Msa0379020:CDS 35.0%
! TTGGTTTCTTCTTCCCTTTT+CGG + chr3_1:79898254-79898273 None:intergenic 35.0%
AACACCTGGAAAATCTTTCA+AGG + chr3_1:79898384-79898403 None:intergenic 35.0%
AGATTGCAAATCTCATATGG+TGG - chr3_1:79898418-79898437 Msa0379020:CDS 35.0%
CACAATGCATGTGAACTTTA+AGG + chr3_1:79898733-79898752 None:intergenic 35.0%
ATACTATCGTTTGACTGAAC+CGG - chr3_1:79898925-79898944 Msa0379020:intron 35.0%
TCCGTGCGTAATAATTACAT+TGG + chr3_1:79899086-79899105 None:intergenic 35.0%
TCCGCGCATAATGATTTAAT+TGG + chr3_1:79899181-79899200 None:intergenic 35.0%
ACCAACTAAATCATTGTGTG+CGG - chr3_1:79899260-79899279 Msa0379020:intron 35.0%
ACATATTCAACCAGCATTGT+TGG + chr3_1:79899518-79899537 None:intergenic 35.0%
TGAGAATAAAGAAGAAGGAG+AGG - chr3_1:79899643-79899662 Msa0379020:CDS 35.0%
GAGAATAAAGAAGAAGGAGA+GGG - chr3_1:79899644-79899663 Msa0379020:CDS 35.0%
TACTGTAGAAGAGACAAATG+TGG - chr3_1:79899703-79899722 Msa0379020:CDS 35.0%
TATGCATACAAATCCATGGA+TGG + chr3_1:79899764-79899783 None:intergenic 35.0%
TTGTATGCATACCCAGAAAT+TGG - chr3_1:79899773-79899792 Msa0379020:CDS 35.0%
ATGCAGGATATCCAATTTCT+GGG + chr3_1:79899787-79899806 None:intergenic 35.0%
TATGCAGGATATCCAATTTC+TGG + chr3_1:79899788-79899807 None:intergenic 35.0%
TTCTCATCACTGAACATTTG+TGG + chr3_1:79899863-79899882 None:intergenic 35.0%
CAAAGATTGTACTGGAAATC+TGG - chr3_1:79899931-79899950 Msa0379020:intron 35.0%
GTATACTTTCTGTTGAAGTG+GGG - chr3_1:79900070-79900089 Msa0379020:five_prime_UTR 35.0%
TTAGGAAGAGAAGAAAACAG+AGG - chr3_1:79898196-79898215 Msa0379020:CDS 35.0%
AAAAAACAGAGGAACCGAAA+AGG - chr3_1:79898237-79898256 Msa0379020:CDS 35.0%
AAAAACAGAGGAACCGAAAA+GGG - chr3_1:79898238-79898257 Msa0379020:CDS 35.0%
! TTGGTTTCTTCTTCCCTTTT+CGG + chr3_1:79898254-79898273 None:intergenic 35.0%
AACACCTGGAAAATCTTTCA+AGG + chr3_1:79898384-79898403 None:intergenic 35.0%
AGATTGCAAATCTCATATGG+TGG - chr3_1:79898418-79898437 Msa0379020:CDS 35.0%
CACAATGCATGTGAACTTTA+AGG + chr3_1:79898733-79898752 None:intergenic 35.0%
ATACTATCGTTTGACTGAAC+CGG - chr3_1:79898925-79898944 Msa0379020:intron 35.0%
TCCGTGCGTAATAATTACAT+TGG + chr3_1:79899086-79899105 None:intergenic 35.0%
TCCGCGCATAATGATTTAAT+TGG + chr3_1:79899181-79899200 None:intergenic 35.0%
ACCAACTAAATCATTGTGTG+CGG - chr3_1:79899260-79899279 Msa0379020:intron 35.0%
ACATATTCAACCAGCATTGT+TGG + chr3_1:79899518-79899537 None:intergenic 35.0%
TGAGAATAAAGAAGAAGGAG+AGG - chr3_1:79899643-79899662 Msa0379020:CDS 35.0%
GAGAATAAAGAAGAAGGAGA+GGG - chr3_1:79899644-79899663 Msa0379020:CDS 35.0%
TACTGTAGAAGAGACAAATG+TGG - chr3_1:79899703-79899722 Msa0379020:CDS 35.0%
TATGCATACAAATCCATGGA+TGG + chr3_1:79899764-79899783 None:intergenic 35.0%
TTGTATGCATACCCAGAAAT+TGG - chr3_1:79899773-79899792 Msa0379020:CDS 35.0%
ATGCAGGATATCCAATTTCT+GGG + chr3_1:79899787-79899806 None:intergenic 35.0%
TATGCAGGATATCCAATTTC+TGG + chr3_1:79899788-79899807 None:intergenic 35.0%
TTCTCATCACTGAACATTTG+TGG + chr3_1:79899863-79899882 None:intergenic 35.0%
CAAAGATTGTACTGGAAATC+TGG - chr3_1:79899931-79899950 Msa0379020:intron 35.0%
AGCAGAGTAACTAACACCAA+TGG - chr3_1:79898047-79898066 Msa0379020:three_prime_UTR 40.0%
GCAGAGTAACTAACACCAAT+GGG - chr3_1:79898048-79898067 Msa0379020:three_prime_UTR 40.0%
AACAGAGGAAAGTAAGACAG+AGG - chr3_1:79898211-79898230 Msa0379020:CDS 40.0%
!! ATCTTTTGTTTCCTCTGGCT+TGG + chr3_1:79898273-79898292 None:intergenic 40.0%
!! GCTTCATCTTTTGTTTCCTC+TGG + chr3_1:79898278-79898297 None:intergenic 40.0%
ACTTTCAGCATAATCTCTGC+CGG + chr3_1:79898320-79898339 None:intergenic 40.0%
GTTATCACATCTTCAACACC+TGG + chr3_1:79898398-79898417 None:intergenic 40.0%
TCTCATATGGTGGTTGTGAA+AGG - chr3_1:79898428-79898447 Msa0379020:CDS 40.0%
ACTCTCTCCAAAACCTTCAA+TGG + chr3_1:79898467-79898486 None:intergenic 40.0%
GAGTTCAGAAGAAGAGTCAT+AGG - chr3_1:79898483-79898502 Msa0379020:CDS 40.0%
TCAGAAGAAGAGTCATAGGA+AGG - chr3_1:79898487-79898506 Msa0379020:CDS 40.0%
AAAAGTTGCTGAGGAAGAGA+AGG - chr3_1:79898550-79898569 Msa0379020:CDS 40.0%
TCTTCTTTCTTCTCCTCTTC+AGG + chr3_1:79898581-79898600 None:intergenic 40.0%
TGAAGAGGAGAAGAAAGAAG+AGG - chr3_1:79898580-79898599 Msa0379020:CDS 40.0%
GATTTGATCCTTTGAATCCG+TGG - chr3_1:79898661-79898680 Msa0379020:intron 40.0%
AGGACAACAATCACAATCTG+AGG + chr3_1:79898713-79898732 None:intergenic 40.0%
TCCGCACACAATGATTTAGT+TGG + chr3_1:79899264-79899283 None:intergenic 40.0%
TAAGCAGTGGAATAATGAGC+TGG - chr3_1:79899410-79899429 Msa0379020:intron 40.0%
AACTGATCTGAAGAACTCTG+AGG - chr3_1:79899469-79899488 Msa0379020:intron 40.0%
!! AACTCTGAGGTAAGTGTGAA+GGG - chr3_1:79899482-79899501 Msa0379020:CDS 40.0%
GATCATGAAGGAAGAGAAAG+TGG - chr3_1:79899565-79899584 Msa0379020:CDS 40.0%
!!! TTTTTTCTCTTCCTCGGCTT+TGG + chr3_1:79899600-79899619 None:intergenic 40.0%
!!! CTCCTCTTTTTTCTCTTCCT+CGG + chr3_1:79899606-79899625 None:intergenic 40.0%
AGAGGAGAAAGTTGAAGAAG+TGG - chr3_1:79899619-79899638 Msa0379020:CDS 40.0%
GTGGCTGAGAATAAAGAAGA+AGG - chr3_1:79899638-79899657 Msa0379020:CDS 40.0%
AGAAGAGACAAATGTGGAAG+AGG - chr3_1:79899709-79899728 Msa0379020:CDS 40.0%
TGGGTATGCATACAAATCCA+TGG + chr3_1:79899768-79899787 None:intergenic 40.0%
AGCAGAGTAACTAACACCAA+TGG - chr3_1:79898047-79898066 Msa0379020:three_prime_UTR 40.0%
GCAGAGTAACTAACACCAAT+GGG - chr3_1:79898048-79898067 Msa0379020:three_prime_UTR 40.0%
AACAGAGGAAAGTAAGACAG+AGG - chr3_1:79898211-79898230 Msa0379020:CDS 40.0%
!! ATCTTTTGTTTCCTCTGGCT+TGG + chr3_1:79898273-79898292 None:intergenic 40.0%
!! GCTTCATCTTTTGTTTCCTC+TGG + chr3_1:79898278-79898297 None:intergenic 40.0%
ACTTTCAGCATAATCTCTGC+CGG + chr3_1:79898320-79898339 None:intergenic 40.0%
GTTATCACATCTTCAACACC+TGG + chr3_1:79898398-79898417 None:intergenic 40.0%
TCTCATATGGTGGTTGTGAA+AGG - chr3_1:79898428-79898447 Msa0379020:CDS 40.0%
ACTCTCTCCAAAACCTTCAA+TGG + chr3_1:79898467-79898486 None:intergenic 40.0%
GAGTTCAGAAGAAGAGTCAT+AGG - chr3_1:79898483-79898502 Msa0379020:CDS 40.0%
TCAGAAGAAGAGTCATAGGA+AGG - chr3_1:79898487-79898506 Msa0379020:CDS 40.0%
AAAAGTTGCTGAGGAAGAGA+AGG - chr3_1:79898550-79898569 Msa0379020:CDS 40.0%
TCTTCTTTCTTCTCCTCTTC+AGG + chr3_1:79898581-79898600 None:intergenic 40.0%
TGAAGAGGAGAAGAAAGAAG+AGG - chr3_1:79898580-79898599 Msa0379020:CDS 40.0%
GATTTGATCCTTTGAATCCG+TGG - chr3_1:79898661-79898680 Msa0379020:intron 40.0%
AGGACAACAATCACAATCTG+AGG + chr3_1:79898713-79898732 None:intergenic 40.0%
TCCGCACACAATGATTTAGT+TGG + chr3_1:79899264-79899283 None:intergenic 40.0%
TAAGCAGTGGAATAATGAGC+TGG - chr3_1:79899410-79899429 Msa0379020:intron 40.0%
AACTGATCTGAAGAACTCTG+AGG - chr3_1:79899469-79899488 Msa0379020:intron 40.0%
!! AACTCTGAGGTAAGTGTGAA+GGG - chr3_1:79899482-79899501 Msa0379020:CDS 40.0%
GATCATGAAGGAAGAGAAAG+TGG - chr3_1:79899565-79899584 Msa0379020:CDS 40.0%
!!! TTTTTTCTCTTCCTCGGCTT+TGG + chr3_1:79899600-79899619 None:intergenic 40.0%
!!! CTCCTCTTTTTTCTCTTCCT+CGG + chr3_1:79899606-79899625 None:intergenic 40.0%
AGAGGAGAAAGTTGAAGAAG+TGG - chr3_1:79899619-79899638 Msa0379020:CDS 40.0%
GTGGCTGAGAATAAAGAAGA+AGG - chr3_1:79899638-79899657 Msa0379020:CDS 40.0%
AGAAGAGACAAATGTGGAAG+AGG - chr3_1:79899709-79899728 Msa0379020:CDS 40.0%
TGGGTATGCATACAAATCCA+TGG + chr3_1:79899768-79899787 None:intergenic 40.0%
TACTCTGCTGCTGAGATTAC+AGG + chr3_1:79898036-79898055 None:intergenic 45.0%
TCTTTCAATACCTCGCCCAT+TGG + chr3_1:79898066-79898085 None:intergenic 45.0%
AGAGGAAAGTAAGACAGAGG+AGG - chr3_1:79898214-79898233 Msa0379020:CDS 45.0%
GACAGAGGAGGAAAAAACAG+AGG - chr3_1:79898226-79898245 Msa0379020:CDS 45.0%
TGCATTGTGAAAGCTGTGCT+CGG - chr3_1:79898345-79898364 Msa0379020:CDS 45.0%
! CGGTCCTTGAAAGATTTTCC+AGG - chr3_1:79898377-79898396 Msa0379020:CDS 45.0%
AGAGAAAGCAGAGCCATTGA+AGG - chr3_1:79898451-79898470 Msa0379020:CDS 45.0%
! AGCAGAGCCATTGAAGGTTT+TGG - chr3_1:79898457-79898476 Msa0379020:CDS 45.0%
!! TCAGCAACTTTTTCCTCCTC+AGG + chr3_1:79898542-79898561 None:intergenic 45.0%
TGAGGAGGAAAAAGTTGCTG+AGG - chr3_1:79898541-79898560 Msa0379020:CDS 45.0%
GCATAACTCCACGGATTCAA+AGG + chr3_1:79898672-79898691 None:intergenic 45.0%
CATGCATTGTGAAGCTTGTG+CGG - chr3_1:79898742-79898761 Msa0379020:intron 45.0%
GTGCGGAGGAGATCAAAAAA+CGG - chr3_1:79898759-79898778 Msa0379020:intron 45.0%
AAAAACGGCTCAACCAACCA+TGG + chr3_1:79898966-79898985 None:intergenic 45.0%
TATGCGCGGAATATCATGTC+CGG - chr3_1:79899191-79899210 Msa0379020:intron 45.0%
!! GGTTGATGTAATTGACTCGC+AGG - chr3_1:79899431-79899450 Msa0379020:intron 45.0%
!! ATGTAATTGACTCGCAGGAG+TGG - chr3_1:79899436-79899455 Msa0379020:intron 45.0%
!! GAACTCTGAGGTAAGTGTGA+AGG - chr3_1:79899481-79899500 Msa0379020:CDS 45.0%
!! ACTCTGAGGTAAGTGTGAAG+GGG - chr3_1:79899483-79899502 Msa0379020:CDS 45.0%
GGTGTATGATCCAACAATGC+TGG - chr3_1:79899505-79899524 Msa0379020:CDS 45.0%
GAAGCATGCAGTGATCATGA+AGG - chr3_1:79899553-79899572 Msa0379020:CDS 45.0%
CATGAAGGAAGAGAAAGTGG+AGG - chr3_1:79899568-79899587 Msa0379020:CDS 45.0%
AGCCGAGGAAGAGAAAAAAG+AGG - chr3_1:79899601-79899620 Msa0379020:CDS 45.0%
TAAAGAAGAAGGAGAGGGTG+AGG - chr3_1:79899649-79899668 Msa0379020:CDS 45.0%
TTTCTCCTCTTCTTGTGGCT+TGG + chr3_1:79899675-79899694 None:intergenic 45.0%
GCTTCTTTCTCCTCTTCTTG+TGG + chr3_1:79899680-79899699 None:intergenic 45.0%
GAGCATGATAGTAAGCAGCT+GGG + chr3_1:79899811-79899830 None:intergenic 45.0%
TGAGCATGATAGTAAGCAGC+TGG + chr3_1:79899812-79899831 None:intergenic 45.0%
ACATGACACTGCACGCATTT+GGG + chr3_1:79899886-79899905 None:intergenic 45.0%
TACTCTGCTGCTGAGATTAC+AGG + chr3_1:79898036-79898055 None:intergenic 45.0%
TCTTTCAATACCTCGCCCAT+TGG + chr3_1:79898066-79898085 None:intergenic 45.0%
AGAGGAAAGTAAGACAGAGG+AGG - chr3_1:79898214-79898233 Msa0379020:CDS 45.0%
GACAGAGGAGGAAAAAACAG+AGG - chr3_1:79898226-79898245 Msa0379020:CDS 45.0%
TGCATTGTGAAAGCTGTGCT+CGG - chr3_1:79898345-79898364 Msa0379020:CDS 45.0%
! CGGTCCTTGAAAGATTTTCC+AGG - chr3_1:79898377-79898396 Msa0379020:CDS 45.0%
AGAGAAAGCAGAGCCATTGA+AGG - chr3_1:79898451-79898470 Msa0379020:CDS 45.0%
! AGCAGAGCCATTGAAGGTTT+TGG - chr3_1:79898457-79898476 Msa0379020:CDS 45.0%
!! TCAGCAACTTTTTCCTCCTC+AGG + chr3_1:79898542-79898561 None:intergenic 45.0%
TGAGGAGGAAAAAGTTGCTG+AGG - chr3_1:79898541-79898560 Msa0379020:CDS 45.0%
GCATAACTCCACGGATTCAA+AGG + chr3_1:79898672-79898691 None:intergenic 45.0%
CATGCATTGTGAAGCTTGTG+CGG - chr3_1:79898742-79898761 Msa0379020:intron 45.0%
GTGCGGAGGAGATCAAAAAA+CGG - chr3_1:79898759-79898778 Msa0379020:intron 45.0%
AAAAACGGCTCAACCAACCA+TGG + chr3_1:79898966-79898985 None:intergenic 45.0%
TATGCGCGGAATATCATGTC+CGG - chr3_1:79899191-79899210 Msa0379020:intron 45.0%
!! GGTTGATGTAATTGACTCGC+AGG - chr3_1:79899431-79899450 Msa0379020:intron 45.0%
!! ATGTAATTGACTCGCAGGAG+TGG - chr3_1:79899436-79899455 Msa0379020:intron 45.0%
!! GAACTCTGAGGTAAGTGTGA+AGG - chr3_1:79899481-79899500 Msa0379020:CDS 45.0%
!! ACTCTGAGGTAAGTGTGAAG+GGG - chr3_1:79899483-79899502 Msa0379020:CDS 45.0%
GGTGTATGATCCAACAATGC+TGG - chr3_1:79899505-79899524 Msa0379020:CDS 45.0%
GAAGCATGCAGTGATCATGA+AGG - chr3_1:79899553-79899572 Msa0379020:CDS 45.0%
CATGAAGGAAGAGAAAGTGG+AGG - chr3_1:79899568-79899587 Msa0379020:CDS 45.0%
AGCCGAGGAAGAGAAAAAAG+AGG - chr3_1:79899601-79899620 Msa0379020:CDS 45.0%
TAAAGAAGAAGGAGAGGGTG+AGG - chr3_1:79899649-79899668 Msa0379020:CDS 45.0%
TTTCTCCTCTTCTTGTGGCT+TGG + chr3_1:79899675-79899694 None:intergenic 45.0%
GCTTCTTTCTCCTCTTCTTG+TGG + chr3_1:79899680-79899699 None:intergenic 45.0%
GAGCATGATAGTAAGCAGCT+GGG + chr3_1:79899811-79899830 None:intergenic 45.0%
TGAGCATGATAGTAAGCAGC+TGG + chr3_1:79899812-79899831 None:intergenic 45.0%
ACATGACACTGCACGCATTT+GGG + chr3_1:79899886-79899905 None:intergenic 45.0%
!!! AATTTTTTTTTTTTTTGTTT+AGG - chr3_1:79898178-79898197 Msa0379020:CDS 5.0%
!!! AATTTTTTTTTTTTTTGTTT+AGG - chr3_1:79898178-79898197 Msa0379020:CDS 5.0%
GTAACTAACACCAATGGGCG+AGG - chr3_1:79898053-79898072 Msa0379020:three_prime_UTR 50.0%
GGAAGAAGAAACCAAGCCAG+AGG - chr3_1:79898259-79898278 Msa0379020:CDS 50.0%
TTCAGCATAATCTCTGCCGG+AGG + chr3_1:79898317-79898336 None:intergenic 50.0%
TTTCCTCCTCAGGAGCAGTT+GGG + chr3_1:79898532-79898551 None:intergenic 50.0%
! TTTTCCTCCTCAGGAGCAGT+TGG + chr3_1:79898533-79898552 None:intergenic 50.0%
! TTGACTCGCAGGAGTGGAAT+TGG - chr3_1:79899442-79899461 Msa0379020:intron 50.0%
!! CTCTGAGGTAAGTGTGAAGG+GGG - chr3_1:79899484-79899503 Msa0379020:CDS 50.0%
GAAGGAAGAGAAAGTGGAGG+AGG - chr3_1:79899571-79899590 Msa0379020:CDS 50.0%
TAGTAAGCAGCTGGGTATGC+AGG + chr3_1:79899803-79899822 None:intergenic 50.0%
TCACTGAACATTTGTGGCGC+CGG + chr3_1:79899857-79899876 None:intergenic 50.0%
CACATGACACTGCACGCATT+TGG + chr3_1:79899887-79899906 None:intergenic 50.0%
GTAACTAACACCAATGGGCG+AGG - chr3_1:79898053-79898072 Msa0379020:three_prime_UTR 50.0%
GGAAGAAGAAACCAAGCCAG+AGG - chr3_1:79898259-79898278 Msa0379020:CDS 50.0%
TTCAGCATAATCTCTGCCGG+AGG + chr3_1:79898317-79898336 None:intergenic 50.0%
TTTCCTCCTCAGGAGCAGTT+GGG + chr3_1:79898532-79898551 None:intergenic 50.0%
! TTTTCCTCCTCAGGAGCAGT+TGG + chr3_1:79898533-79898552 None:intergenic 50.0%
! TTGACTCGCAGGAGTGGAAT+TGG - chr3_1:79899442-79899461 Msa0379020:intron 50.0%
!! CTCTGAGGTAAGTGTGAAGG+GGG - chr3_1:79899484-79899503 Msa0379020:CDS 50.0%
GAAGGAAGAGAAAGTGGAGG+AGG - chr3_1:79899571-79899590 Msa0379020:CDS 50.0%
TAGTAAGCAGCTGGGTATGC+AGG + chr3_1:79899803-79899822 None:intergenic 50.0%
TCACTGAACATTTGTGGCGC+CGG + chr3_1:79899857-79899876 None:intergenic 50.0%
CACATGACACTGCACGCATT+TGG + chr3_1:79899887-79899906 None:intergenic 50.0%
AGCATAATCTCTGCCGGAGG+CGG + chr3_1:79898314-79898333 None:intergenic 55.0%
GCTGTGCTCGGAAAGTTCGT+CGG - chr3_1:79898357-79898376 Msa0379020:CDS 55.0%
TCCTCAGGAGCAGTTGGGAT+CGG + chr3_1:79898527-79898546 None:intergenic 55.0%
AGAGAAGGCTGCACCTGAAG+AGG - chr3_1:79898565-79898584 Msa0379020:CDS 55.0%
GCATTGTGAAGCTTGTGCGG+AGG - chr3_1:79898745-79898764 Msa0379020:intron 55.0%
ACTCGCAGGAGTGGAATTGG+TGG - chr3_1:79899445-79899464 Msa0379020:intron 55.0%
TGAGGCCAAGCCACAAGAAG+AGG - chr3_1:79899667-79899686 Msa0379020:CDS 55.0%
AGCATAATCTCTGCCGGAGG+CGG + chr3_1:79898314-79898333 None:intergenic 55.0%
GCTGTGCTCGGAAAGTTCGT+CGG - chr3_1:79898357-79898376 Msa0379020:CDS 55.0%
TCCTCAGGAGCAGTTGGGAT+CGG + chr3_1:79898527-79898546 None:intergenic 55.0%
AGAGAAGGCTGCACCTGAAG+AGG - chr3_1:79898565-79898584 Msa0379020:CDS 55.0%
GCATTGTGAAGCTTGTGCGG+AGG - chr3_1:79898745-79898764 Msa0379020:intron 55.0%
ACTCGCAGGAGTGGAATTGG+TGG - chr3_1:79899445-79899464 Msa0379020:intron 55.0%
TGAGGCCAAGCCACAAGAAG+AGG - chr3_1:79899667-79899686 Msa0379020:CDS 55.0%
TGATGTTCCTCCACCGCCTC+CGG - chr3_1:79898298-79898317 Msa0379020:CDS 60.0%
ATAATCTCTGCCGGAGGCGG+TGG + chr3_1:79898311-79898330 None:intergenic 60.0%
TCCGATCCCAACTGCTCCTG+AGG - chr3_1:79898523-79898542 Msa0379020:CDS 60.0%
GATCCCAACTGCTCCTGAGG+AGG - chr3_1:79898526-79898545 Msa0379020:CDS 60.0%
!! AACATTTGTGGCGCCGGTGG+CGG + chr3_1:79899851-79899870 None:intergenic 60.0%
! CTGAACATTTGTGGCGCCGG+TGG + chr3_1:79899854-79899873 None:intergenic 60.0%
TGATGTTCCTCCACCGCCTC+CGG - chr3_1:79898298-79898317 Msa0379020:CDS 60.0%
ATAATCTCTGCCGGAGGCGG+TGG + chr3_1:79898311-79898330 None:intergenic 60.0%
TCCGATCCCAACTGCTCCTG+AGG - chr3_1:79898523-79898542 Msa0379020:CDS 60.0%
GATCCCAACTGCTCCTGAGG+AGG - chr3_1:79898526-79898545 Msa0379020:CDS 60.0%
!! AACATTTGTGGCGCCGGTGG+CGG + chr3_1:79899851-79899870 None:intergenic 60.0%
! CTGAACATTTGTGGCGCCGG+TGG + chr3_1:79899854-79899873 None:intergenic 60.0%
GGAGGAGGAAGCCAAAGCCG+AGG - chr3_1:79899586-79899605 Msa0379020:CDS 65.0%
ATACCCTCCACCACCGCCAC+CGG - chr3_1:79899835-79899854 Msa0379020:CDS 65.0%
GGAGGAGGAAGCCAAAGCCG+AGG - chr3_1:79899586-79899605 Msa0379020:CDS 65.0%
ATACCCTCCACCACCGCCAC+CGG - chr3_1:79899835-79899854 Msa0379020:CDS 65.0%
ATCTCTGCCGGAGGCGGTGG+AGG + chr3_1:79898308-79898327 None:intergenic 70.0%
!! ATTTGTGGCGCCGGTGGCGG+TGG + chr3_1:79899848-79899867 None:intergenic 70.0%
ATCTCTGCCGGAGGCGGTGG+AGG + chr3_1:79898308-79898327 None:intergenic 70.0%
!! ATTTGTGGCGCCGGTGGCGG+TGG + chr3_1:79899848-79899867 None:intergenic 70.0%
!!! GCGCCGGTGGCGGTGGTGGA+GGG + chr3_1:79899841-79899860 None:intergenic 80.0%
!!! TGTGGCGCCGGTGGCGGTGG+TGG + chr3_1:79899845-79899864 None:intergenic 80.0%
!!! GCGCCGGTGGCGGTGGTGGA+GGG + chr3_1:79899841-79899860 None:intergenic 80.0%
!!! TGTGGCGCCGGTGGCGGTGG+TGG + chr3_1:79899845-79899864 None:intergenic 80.0%
!!! GGCGCCGGTGGCGGTGGTGG+AGG + chr3_1:79899842-79899861 None:intergenic 85.0%
!!! GGCGCCGGTGGCGGTGGTGG+AGG + chr3_1:79899842-79899861 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79897987 79900091 79897987 ID=Msa0379020;Name=Msa0379020
chr3_1 mRNA 79897987 79900091 79897987 ID=Msa0379020-mRNA-1;Parent=Msa0379020;Name=Msa0379020-mRNA-1;_AED=0.25;_eAED=0.25;_QI=79|1|1|1|1|1|4|184|317
chr3_1 exon 79897987 79898625 79897987 ID=Msa0379020-mRNA-1:exon:19857;Parent=Msa0379020-mRNA-1
chr3_1 exon 79899281 79899368 79899281 ID=Msa0379020-mRNA-1:exon:19856;Parent=Msa0379020-mRNA-1
chr3_1 exon 79899477 79899878 79899477 ID=Msa0379020-mRNA-1:exon:19855;Parent=Msa0379020-mRNA-1
chr3_1 exon 79900004 79900091 79900004 ID=Msa0379020-mRNA-1:exon:19854;Parent=Msa0379020-mRNA-1
chr3_1 five_prime_UTR 79900013 79900091 79900013 ID=Msa0379020-mRNA-1:five_prime_utr;Parent=Msa0379020-mRNA-1
chr3_1 CDS 79900004 79900012 79900004 ID=Msa0379020-mRNA-1:cds;Parent=Msa0379020-mRNA-1
chr3_1 CDS 79899477 79899878 79899477 ID=Msa0379020-mRNA-1:cds;Parent=Msa0379020-mRNA-1
chr3_1 CDS 79899281 79899368 79899281 ID=Msa0379020-mRNA-1:cds;Parent=Msa0379020-mRNA-1
chr3_1 CDS 79898171 79898625 79898171 ID=Msa0379020-mRNA-1:cds;Parent=Msa0379020-mRNA-1
chr3_1 three_prime_UTR 79897987 79898170 79897987 ID=Msa0379020-mRNA-1:three_prime_utr;Parent=Msa0379020-mRNA-1
Gene Sequence

>Msa0379020

ATGGGCGAGGAAGAGAAGAAAACAGAGGAAAGTAAGACAGAGGAGGAAAAAACAGAGGAACCGAAAAGGGAAGAAGAAACCAAGCCAGAGGAAACAAAAGATGAAGCTGATGTTCCTCCACCGCCTCCGGCAGAGATTATGCTGAAAGTTTTCATGCATTGTGAAAGCTGTGCTCGGAAAGTTCGTCGGTCCTTGAAAGATTTTCCAGGTGTTGAAGATGTGATAACAGATTGCAAATCTCATATGGTGGTTGTGAAAGGAGAGAAAGCAGAGCCATTGAAGGTTTTGGAGAGAGTTCAGAAGAAGAGTCATAGGAAGGTTGAGCTTCTTTCTCCGATCCCAACTGCTCCTGAGGAGGAAAAAGTTGCTGAGGAAGAGAAGGCTGCACCTGAAGAGGAGAAGAAAGAAGAGCCTCAGATTGTGATTGTTGTCCTTAAAGTTCACATGCATTGTGAAGCTTGTGCGGAGGAGATCAAAAAACGGATACTAAAAATGAATGGAGTGGAATTGGTGGAAACTGATCTGAAGAACTCTGAGGTAAGTGTGAAGGGGGTGTATGATCCAACAATGCTGGTTGAATATGTGTACAAGAGAATTGGGAAGCATGCAGTGATCATGAAGGAAGAGAAAGTGGAGGAGGAAGCCAAAGCCGAGGAAGAGAAAAAAGAGGAGAAAGTTGAAGAAGTGGCTGAGAATAAAGAAGAAGGAGAGGGTGAGGCCAAGCCACAAGAAGAGGAGAAAGAAGCAGTTACTGTAGAAGAGACAAATGTGGAAGAGGAGATGAAGAAATATCAATACTACTATAATCCATCCATGGATTTGTATGCATACCCAGAAATTGGATATCCTGCATACCCAGCTGCTTACTATCATGCTCATGCATACCCTCCACCACCGCCACCGGCGCCACAAATGTTCAGTGATGAGAACCCAAATGCGTGCAGTGTCATGTGA
Protein sequence

>Msa0379020

MGEEEKKTEESKTEEEKTEEPKREEETKPEETKDEADVPPPPPAEIMLKVFMHCESCARKVRRSLKDFPGVEDVITDCKSHMVVVKGEKAEPLKVLERVQKKSHRKVELLSPIPTAPEEEKVAEEEKAAPEEEKKEEPQIVIVVLKVHMHCEACAEEIKKRILKMNGVELVETDLKNSEVSVKGVYDPTMLVEYVYKRIGKHAVIMKEEKVEEEAKAEEEKKEEKVEEVAENKEEGEGEAKPQEEEKEAVTVEETNVEEEMKKYQYYYNPSMDLYAYPEIGYPAYPAAYYHAHAYPPPPPPAPQMFSDENPNACSVM*