AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379040 MtrunA17_Chr3g0132091 94.602 352 17 2 26 376 1 351 0.0 676
Msa0379040 MtrunA17_Chr8g0386271 59.069 408 117 20 1 376 1 390 2.42e-135 392
Msa0379040 MtrunA17_Chr7g0224821 33.753 397 212 10 1 376 1 367 1.36e-55 186
Msa0379040 MtrunA17_Chr4g0061651 55.474 137 41 4 43 172 75 198 5.85e-39 144
Msa0379040 MtrunA17_Chr2g0308321 50.323 155 67 3 43 192 122 271 3.42e-38 144
Msa0379040 MtrunA17_Chr5g0420051 45.752 153 79 1 43 195 131 279 2.04e-37 140
Msa0379040 MtrunA17_Chr3g0122411 50.000 126 61 2 83 206 151 276 1.41e-36 137
Msa0379040 MtrunA17_Chr7g0231911 58.696 92 38 0 87 178 139 230 1.20e-33 127
Msa0379040 MtrunA17_Chr4g0046991 57.000 100 40 1 71 170 50 146 6.91e-32 117
Msa0379040 MtrunA17_Chr7g0258471 36.402 239 119 5 97 330 142 352 2.41e-31 122
Msa0379040 MtrunA17_Chr8g0360361 64.103 78 28 0 97 174 65 142 5.60e-31 116
Msa0379040 MtrunA17_Chr1g0162871 46.715 137 67 2 97 233 104 234 3.88e-30 122
Msa0379040 MtrunA17_Chr8g0334671 68.421 76 24 0 97 172 187 262 4.69e-30 117
Msa0379040 MtrunA17_Chr2g0282521 61.905 84 32 0 91 174 58 141 7.08e-30 112
Msa0379040 MtrunA17_Chr2g0302791 59.302 86 35 0 97 182 139 224 1.62e-29 120
Msa0379040 MtrunA17_Chr1g0194121 55.000 100 43 1 83 182 133 230 1.68e-29 120
Msa0379040 MtrunA17_Chr7g0270541 50.450 111 52 2 72 182 121 228 1.47e-28 117
Msa0379040 MtrunA17_Chr8g0377421 46.429 112 58 1 97 206 132 243 3.99e-27 109
Msa0379040 MtrunA17_Chr8g0377401 58.904 73 30 0 97 169 162 234 1.04e-22 95.9
Msa0379040 MtrunA17_Chr8g0366211 52.747 91 43 0 47 137 39 129 2.35e-18 80.5
Msa0379040 MtrunA17_Chr2g0286661 50.000 74 37 0 97 170 103 176 3.79e-18 86.3
Msa0379040 MtrunA17_Chr2g0317041 59.574 47 19 0 97 143 99 145 1.59e-14 70.5
Msa0379040 MtrunA17_Chr1g0175031 61.702 47 18 0 97 143 74 120 3.06e-14 69.3
Msa0379040 MtrunA17_Chr8g0377431 53.571 56 26 0 97 152 151 206 5.09e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379040 AT5G50570.1 38.806 402 177 17 1 376 1 359 2.02e-68 219
Msa0379040 AT5G50570.2 38.806 402 177 17 1 376 1 359 2.02e-68 219
Msa0379040 AT5G50670.1 38.806 402 177 17 1 376 1 359 2.02e-68 219
Msa0379040 AT5G50670.2 38.806 402 177 17 1 376 1 359 2.02e-68 219
Msa0379040 AT1G27370.6 53.636 110 48 2 64 172 144 251 6.69e-33 126
Msa0379040 AT1G27370.1 53.636 110 48 2 64 172 144 251 9.42e-33 127
Msa0379040 AT1G27370.5 53.636 110 48 2 64 172 144 251 9.42e-33 127
Msa0379040 AT1G27370.3 53.636 110 48 2 64 172 144 251 9.42e-33 127
Msa0379040 AT1G27370.2 53.636 110 48 2 64 172 144 251 9.42e-33 127
Msa0379040 AT1G27370.4 53.636 110 48 2 64 172 144 251 9.42e-33 127
Msa0379040 AT1G27370.7 53.636 110 48 2 64 172 144 251 9.42e-33 127
Msa0379040 AT1G27360.2 54.630 108 44 2 66 172 147 250 1.31e-32 126
Msa0379040 AT1G27360.1 54.630 108 44 2 66 172 147 250 1.31e-32 126
Msa0379040 AT1G27360.3 54.630 108 44 2 66 172 147 250 1.31e-32 126
Msa0379040 AT1G27360.4 54.630 108 44 2 66 172 147 250 1.31e-32 126
Msa0379040 AT2G47070.1 58.252 103 41 1 97 197 106 208 3.92e-32 128
Msa0379040 AT2G42200.1 62.963 81 30 0 97 177 74 154 7.53e-32 124
Msa0379040 AT3G60030.1 55.046 109 46 1 94 199 124 232 8.52e-32 127
Msa0379040 AT1G76580.2 67.901 81 26 0 97 177 114 194 1.02e-31 127
Msa0379040 AT1G76580.3 67.901 81 26 0 97 177 114 194 1.10e-31 127
Msa0379040 AT5G43270.3 63.750 80 29 0 94 173 166 245 1.38e-31 124
Msa0379040 AT5G43270.1 63.750 80 29 0 94 173 166 245 1.38e-31 124
Msa0379040 AT5G43270.2 63.750 80 29 0 94 173 166 245 1.38e-31 124
Msa0379040 AT1G76580.1 67.901 81 26 0 97 177 114 194 1.59e-31 127
Msa0379040 AT3G57920.1 56.701 97 42 0 77 173 39 135 4.33e-31 121
Msa0379040 AT2G33810.1 64.865 74 26 0 97 170 54 127 1.61e-30 114
Msa0379040 AT1G02065.1 64.286 84 30 0 87 170 178 261 2.18e-30 119
Msa0379040 AT1G69170.1 37.768 233 126 4 76 304 100 317 2.39e-30 120
Msa0379040 AT1G53160.3 62.821 78 29 0 97 174 54 131 2.83e-29 112
Msa0379040 AT1G53160.2 62.821 78 29 0 97 174 54 131 5.16e-29 111
Msa0379040 AT1G53160.1 62.821 78 29 0 97 174 54 131 5.16e-29 111
Msa0379040 AT1G20980.1 64.634 82 28 1 97 177 120 201 6.16e-29 119
Msa0379040 AT3G15270.1 60.811 74 29 0 97 170 63 136 2.03e-27 107
Msa0379040 AT2G47070.2 55.696 79 33 1 121 197 1 79 4.19e-19 89.7
Msa0379040 AT1G02065.2 60.345 58 23 0 87 144 178 235 1.28e-17 82.0
Msa0379040 AT5G18830.2 48.684 76 38 1 97 171 138 213 8.10e-17 82.8
Msa0379040 AT5G18830.1 48.684 76 38 1 97 171 138 213 9.69e-17 82.4
Msa0379040 AT5G18830.3 48.684 76 38 1 97 171 138 213 1.02e-16 82.4

Find 136 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTAGGTGTTGCAATTT+TGG 0.158488 3_1:-79924948 None:intergenic
ACCAACCTTACCTTGGTAAT+TGG 0.175692 3_1:-79926337 None:intergenic
AAAGCACCTTCTTGGGATTT+GGG 0.187536 3_1:+79924755 Msa0379040:CDS
GTTGGCAGAACCTTTGTTTA+AGG 0.193299 3_1:-79925135 None:intergenic
TAGGCAACAAAATTCATAAA+TGG 0.196378 3_1:+79928408 Msa0379040:three_prime_UTR
GGAAGAACAATCCCTATATT+TGG 0.232059 3_1:+79924117 Msa0379040:five_prime_UTR
GAAAGCACCTTCTTGGGATT+TGG 0.238938 3_1:+79924754 Msa0379040:CDS
CATACATTACTTTCTCAATA+AGG 0.253963 3_1:-79928348 None:intergenic
ACGAAACCACACCTCTTCTT+AGG 0.280555 3_1:+79927922 Msa0379040:CDS
AAATTTCTATTCCCATTGAT+AGG 0.308664 3_1:-79928243 None:intergenic
CCACATGTACTTGTTGGTTT+TGG 0.311200 3_1:-79927797 None:intergenic
GGAATTTGAAAGCACCTTCT+TGG 0.318651 3_1:+79924747 Msa0379040:CDS
TCTTCCATTGTTTCTATGTT+GGG 0.318840 3_1:-79924800 None:intergenic
CTTCAAAGTCCTTCTTTGAT+TGG 0.322535 3_1:-79924657 None:intergenic
GCAACACCTACTTCTTCTTC+AGG 0.325475 3_1:+79924956 Msa0379040:CDS
CCACAATTTCATTTCATGTA+TGG 0.336973 3_1:+79924251 Msa0379040:five_prime_UTR
ATGGAAGAATCAAACAGATT+TGG 0.341310 3_1:+79924815 Msa0379040:CDS
TGATCACTCTCACTCCCATT+TGG 0.346060 3_1:-79928155 None:intergenic
CATGTATAGGTTTCATTCGC+TGG 0.346570 3_1:+79926203 Msa0379040:intron
AATGTCCCGTATGCAGCCTT+TGG 0.355884 3_1:+79928079 Msa0379040:CDS
TTCTTCCATTGTTTCTATGT+TGG 0.356796 3_1:-79924801 None:intergenic
GATCAGAGGAACAGTGTTAA+GGG 0.376528 3_1:-79924207 None:intergenic
TCTCAAGCTACTATACATAC+TGG 0.392962 3_1:+79924085 Msa0379040:five_prime_UTR
GATCACTCTCACTCCCATTT+GGG 0.397635 3_1:-79928154 None:intergenic
CTCAACTATTTCCCTATCAA+TGG 0.401247 3_1:+79928231 Msa0379040:CDS
GAATTTGAAAGCACCTTCTT+GGG 0.406706 3_1:+79924748 Msa0379040:CDS
ATTTGAAGCTTGGTCAGGTT+GGG 0.406990 3_1:+79924870 Msa0379040:CDS
AGATCAGAGGAACAGTGTTA+AGG 0.407131 3_1:-79924208 None:intergenic
AAGTTGCTTCCCTTCTCCAT+AGG 0.412844 3_1:-79927859 None:intergenic
AATTGTGGATCACAGGATAA+TGG 0.412890 3_1:-79924236 None:intergenic
ATGTCCCGTATGCAGCCTTT+GGG 0.413710 3_1:+79928080 Msa0379040:CDS
ACACCTGGACTACTTAGTTA+TGG 0.414514 3_1:+79928321 Msa0379040:three_prime_UTR
ACTCCAGAGGTTACAATTTG+TGG 0.417163 3_1:+79925112 Msa0379040:CDS
GTAATTGTAGAGATTATCAT+AGG 0.418535 3_1:+79925059 Msa0379040:CDS
CTACCAGCAGGTCGCGTGAT+AGG 0.419897 3_1:-79926306 None:intergenic
TATAGTAGCTTGAGAGAGAA+AGG 0.422160 3_1:-79924077 None:intergenic
CAGACGCACACATCTGATAA+TGG 0.424137 3_1:+79928026 Msa0379040:CDS
CAATTTGTGGCCTTAAACAA+AGG 0.433957 3_1:+79925125 Msa0379040:CDS
CAGTTTCTTGTCTTGTGGAT+GGG 0.435642 3_1:+79925020 Msa0379040:CDS
TTGGAGTTTATAAAATGAAA+GGG 0.436768 3_1:+79924834 Msa0379040:CDS
TATCAACCACATGTACTTGT+TGG 0.442335 3_1:-79927803 None:intergenic
GAAGGAGTGTTGGTCCCAAA+TGG 0.443655 3_1:+79928140 Msa0379040:CDS
AATTGTAACCTCTGGAGTCT+TGG 0.443787 3_1:-79925107 None:intergenic
AGTTGCTTCCCTTCTCCATA+GGG 0.445636 3_1:-79927858 None:intergenic
AGGCAACAAAATTCATAAAT+GGG 0.447439 3_1:+79928409 Msa0379040:three_prime_UTR
AACTTGAAAAGGGTAGCAAC+TGG 0.449000 3_1:-79927698 None:intergenic
GGAGGGTACACTGTATTGTT+AGG 0.455857 3_1:-79924301 None:intergenic
AGATTATCATAGGCGTCATA+AGG 0.456365 3_1:+79925069 Msa0379040:CDS
GCAGGTCGCGTGATAGGTTC+AGG 0.457130 3_1:-79926300 None:intergenic
TATACATACTGGGAAGGAAC+AGG 0.459121 3_1:+79924096 Msa0379040:five_prime_UTR
ACAGTTTCTTGTCTTGTGGA+TGG 0.459317 3_1:+79925019 Msa0379040:CDS
AATTTCTATTCCCATTGATA+GGG 0.460765 3_1:-79928242 None:intergenic
TGTTGATTTGAAGCTTGGTC+AGG 0.463472 3_1:+79924865 Msa0379040:CDS
AAGCACCTTCTTGGGATTTG+GGG 0.465651 3_1:+79924756 Msa0379040:CDS
CATGGCAGTAGAACTTGAAA+AGG 0.466360 3_1:-79927709 None:intergenic
AGCTGTAGGAAACGTTTAGA+TGG 0.466807 3_1:+79926249 Msa0379040:CDS
TTTCTTCCTGTGAAAGTGGT+AGG 0.467735 3_1:+79927760 Msa0379040:CDS
AGGCCACAAATTGTAACCTC+TGG 0.469390 3_1:-79925115 None:intergenic
TTTGGAGTTTATAAAATGAA+AGG 0.469867 3_1:+79924833 Msa0379040:CDS
TGGGACCAACACTCCTTCCA+TGG 0.470666 3_1:-79928135 None:intergenic
CGACCACTCGTTGCCTGACA+TGG 0.479126 3_1:-79924334 None:intergenic
GGTTCTGCCAACAGTGTAGC+AGG 0.480510 3_1:+79925146 Msa0379040:CDS
TAACAATAGCTTTGAGTCCA+TGG 0.485578 3_1:+79928118 Msa0379040:CDS
CTCATTTCTTCCTGTGAAAG+TGG 0.486411 3_1:+79927756 Msa0379040:CDS
TTGTTCCTCGTTGTATAACA+TGG 0.491290 3_1:+79928178 Msa0379040:CDS
TGATAATGGTTTGGATCAAA+TGG 0.492424 3_1:+79928040 Msa0379040:CDS
GCACACATCTGATAATGGTT+TGG 0.496433 3_1:+79928031 Msa0379040:CDS
CGCGTGATAGGTTCAGGCTG+TGG 0.502946 3_1:-79926294 None:intergenic
CATAATATAATAACAGCAAA+AGG 0.507056 3_1:-79924720 None:intergenic
TTGTATAACATGGGTTCTGA+TGG 0.507293 3_1:+79928188 Msa0379040:CDS
GAAATGAAATTGTGGATCAC+AGG 0.507703 3_1:-79924243 None:intergenic
TCAACTATTTCCCTATCAAT+GGG 0.507836 3_1:+79928232 Msa0379040:CDS
TGAGTCCATGGAAGGAGTGT+TGG 0.509096 3_1:+79928130 Msa0379040:CDS
GAACCTATCACGCGACCTGC+TGG 0.513292 3_1:+79926303 Msa0379040:CDS
TTGCTACTTGTCCTAAGAAG+AGG 0.514720 3_1:-79927933 None:intergenic
ATTGACAGTTTCTTGTCTTG+TGG 0.515582 3_1:+79925015 Msa0379040:CDS
CTTGAGAGAGAAAGGAAAGG+AGG 0.516293 3_1:-79924069 None:intergenic
TCAGTCCCAAAGGCTGCATA+CGG 0.523893 3_1:-79928085 None:intergenic
TCCCTCACAGAATCCATGTC+AGG 0.533090 3_1:+79924321 Msa0379040:five_prime_UTR
CATTCAAAATGAACTAACAA+AGG 0.535590 3_1:-79928290 None:intergenic
ATTCAAAATGAACTAACAAA+GGG 0.537263 3_1:-79928289 None:intergenic
TTTAGGTAACCAATCAAAGA+AGG 0.537929 3_1:+79924648 Msa0379040:intron
GAAGATCCTGAAGAAGAAGT+AGG 0.539972 3_1:-79924962 None:intergenic
TTGCTTCCCTTCTCCATAGG+GGG 0.540375 3_1:-79927856 None:intergenic
TTGAATGAATTCTTTACACC+TGG 0.541734 3_1:+79928306 Msa0379040:three_prime_UTR
AGCACCTTCTTGGGATTTGG+GGG 0.546781 3_1:+79924757 Msa0379040:CDS
TGTTCCTCGTTGTATAACAT+GGG 0.547164 3_1:+79928179 Msa0379040:CDS
GTGAAGCCTACCACTTTCAC+AGG 0.547444 3_1:-79927766 None:intergenic
CTCAAGCTACTATACATACT+GGG 0.547538 3_1:+79924086 Msa0379040:five_prime_UTR
CCATACATGAAATGAAATTG+TGG 0.548130 3_1:-79924251 None:intergenic
AAACCATAACTAAGTAGTCC+AGG 0.551429 3_1:-79928324 None:intergenic
TGGAGTTTATAAAATGAAAG+GGG 0.553424 3_1:+79924835 Msa0379040:CDS
AAGGAGTGTTGGTCCCAAAT+GGG 0.554973 3_1:+79928141 Msa0379040:CDS
CTGCCATGGTGAATTCAGCT+TGG 0.557661 3_1:+79927724 Msa0379040:CDS
GGAACAGTGTTAAGGGGACC+TGG 0.567368 3_1:-79924200 None:intergenic
AGGCAACGAGTGGTCGGTGA+AGG 0.572022 3_1:+79924341 Msa0379040:five_prime_UTR
ATTACCCAACATAGAAACAA+TGG 0.578453 3_1:+79924796 Msa0379040:CDS
TAGCTTGAGAGAGAAAGGAA+AGG 0.582045 3_1:-79924072 None:intergenic
GCTGTTATTATATTATGGAG+TGG 0.582799 3_1:+79924726 Msa0379040:exon
GTGAATTCAGCTTGGAGTAG+CGG 0.589283 3_1:+79927732 Msa0379040:CDS
GCATCATTAGACAAAGGAAG+TGG 0.590112 3_1:-79924914 None:intergenic
GATTTGAAGCTTGGTCAGGT+TGG 0.592453 3_1:+79924869 Msa0379040:CDS
ACTTGAAAAGGGTAGCAACT+GGG 0.597817 3_1:-79927697 None:intergenic
CATTGATAGGGAAATAGTTG+AGG 0.598793 3_1:-79928230 None:intergenic
ATATATACCTGCTACACTGT+TGG 0.601239 3_1:-79925153 None:intergenic
TTACAAGAAGTATATCATCC+AGG 0.601288 3_1:+79924182 Msa0379040:five_prime_UTR
GACAGAAGAGAGAGAGCACA+AGG 0.601971 3_1:-79927996 None:intergenic
AATAGCTTTGAGTCCATGGA+AGG 0.603284 3_1:+79928122 Msa0379040:CDS
CATGTCAGGCAACGAGTGGT+CGG 0.603377 3_1:+79924335 Msa0379040:five_prime_UTR
ATGGCAGTAGAACTTGAAAA+GGG 0.604257 3_1:-79927708 None:intergenic
TGCATACGGGACATTGAATG+AGG 0.606553 3_1:-79928071 None:intergenic
CCATGCAGACTCAGTCCCAA+AGG 0.608403 3_1:-79928095 None:intergenic
CCTTTGGGACTGAGTCTGCA+TGG 0.612958 3_1:+79928095 Msa0379040:CDS
TACACTGTATTGTTAGGTGA+GGG 0.616650 3_1:-79924295 None:intergenic
CAGTCCCAAAGGCTGCATAC+GGG 0.620364 3_1:-79928084 None:intergenic
GCCTGACATGGATTCTGTGA+GGG 0.620984 3_1:-79924322 None:intergenic
AGCTACTATACATACTGGGA+AGG 0.621960 3_1:+79924090 Msa0379040:five_prime_UTR
ATCAGAGGAACAGTGTTAAG+GGG 0.622819 3_1:-79924206 None:intergenic
GACATGGATTCTGTGAGGGA+GGG 0.625616 3_1:-79924318 None:intergenic
GTACACTGTATTGTTAGGTG+AGG 0.626831 3_1:-79924296 None:intergenic
GTTGCTTCCCTTCTCCATAG+GGG 0.627059 3_1:-79927857 None:intergenic
TAGCAGACAATAGCAGCAGA+AGG 0.627951 3_1:-79924377 None:intergenic
ATGGGTTCTGATGGATCACA+AGG 0.638864 3_1:+79928197 Msa0379040:CDS
CCAAAACCAACAAGTACATG+TGG 0.642955 3_1:+79927797 Msa0379040:CDS
GCACCTTCTTGGGATTTGGG+GGG 0.648392 3_1:+79924758 Msa0379040:CDS
ACTTGTCCTAAGAAGAGGTG+TGG 0.652942 3_1:-79927928 None:intergenic
GATAATGGATAAGAGATCAG+AGG 0.653497 3_1:-79924221 None:intergenic
TGACATGGATTCTGTGAGGG+AGG 0.656056 3_1:-79924319 None:intergenic
AATCCATGTCAGGCAACGAG+TGG 0.657568 3_1:+79924331 Msa0379040:five_prime_UTR
ACAACAGCATCATTAGACAA+AGG 0.660295 3_1:-79924920 None:intergenic
AATTTATGATCTCTATCATG+AGG 0.663147 3_1:+79928372 Msa0379040:three_prime_UTR
AGGAAGTGGTGATTGATCAG+TGG 0.671389 3_1:-79924900 None:intergenic
ACTTCATTCCAAGACTCCAG+AGG 0.684162 3_1:+79925099 Msa0379040:CDS
TGCCTGACATGGATTCTGTG+AGG 0.692886 3_1:-79924323 None:intergenic
ACTCCAAGCTGAATTCACCA+TGG 0.715980 3_1:-79927727 None:intergenic
AGAACCCATGTTATACAACG+AGG 0.772576 3_1:-79928183 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAATAAATTATATTTT+TGG + chr3_1:79924150-79924169 Msa0379040:five_prime_UTR 0.0%
!! AAAATAAATAAATAAATAAA+TGG - chr3_1:79924426-79924445 None:intergenic 0.0%
!!! TTTTATTTTTTCCAAATATA+GGG - chr3_1:79924131-79924150 None:intergenic 10.0%
!!! ATTTTATTTTTTCCAAATAT+AGG - chr3_1:79924132-79924151 None:intergenic 10.0%
!! ATAATTTCAAATTTAAACAT+AGG - chr3_1:79925199-79925218 None:intergenic 10.0%
!!! ATATATCATTATTTTGTTAA+TGG - chr3_1:79927599-79927618 None:intergenic 10.0%
!! ATATTTACTTATAAATGTGA+CGG - chr3_1:79925392-79925411 None:intergenic 15.0%
!! GATAGAATAAAATTATAAAG+CGG - chr3_1:79925812-79925831 None:intergenic 15.0%
!!! AGTTTTTCTCAAATTAATAT+CGG + chr3_1:79925952-79925971 Msa0379040:intron 15.0%
!! GAAAACATAGTTTAATTATA+TGG + chr3_1:79926038-79926057 Msa0379040:intron 15.0%
!!! AATTTTCTCTTAAAAAACAA+TGG - chr3_1:79926748-79926767 None:intergenic 15.0%
!!! CTGTCATAATTTTAAAATTT+GGG - chr3_1:79927465-79927484 None:intergenic 15.0%
!!! TCTGTCATAATTTTAAAATT+TGG - chr3_1:79927466-79927485 None:intergenic 15.0%
!! TTGTACTTTAAATAAACTAA+TGG - chr3_1:79927634-79927653 None:intergenic 15.0%
!!! ATTTCATGTATGGTTTTTAA+AGG + chr3_1:79924261-79924280 Msa0379040:five_prime_UTR 20.0%
!! AACAATTGTGAATGATATTT+AGG + chr3_1:79924631-79924650 Msa0379040:intron 20.0%
!! CATAATATAATAACAGCAAA+AGG - chr3_1:79924723-79924742 None:intergenic 20.0%
!!! CTTTTGCTGTTATTATATTA+TGG + chr3_1:79924721-79924740 Msa0379040:exon 20.0%
!!! TTTGGAGTTTATAAAATGAA+AGG + chr3_1:79924833-79924852 Msa0379040:CDS 20.0%
!! TTGGAGTTTATAAAATGAAA+GGG + chr3_1:79924834-79924853 Msa0379040:CDS 20.0%
!! TATTATATTCTATAGCTTAG+GGG - chr3_1:79925236-79925255 None:intergenic 20.0%
!! CTATTATATTCTATAGCTTA+GGG - chr3_1:79925237-79925256 None:intergenic 20.0%
!! TCTATTATATTCTATAGCTT+AGG - chr3_1:79925238-79925257 None:intergenic 20.0%
!!! AATGTTAGAGATTAATTTGA+CGG - chr3_1:79925315-79925334 None:intergenic 20.0%
!! ACATTTAATGAATCTAAAAG+AGG + chr3_1:79925467-79925486 Msa0379040:intron 20.0%
!! TTGTTTATAAATATGACTAG+AGG + chr3_1:79925495-79925514 Msa0379040:intron 20.0%
!! TGTTTATAAATATGACTAGA+GGG + chr3_1:79925496-79925515 Msa0379040:intron 20.0%
!! TTTGGTTAAAGAATAAAGAA+AGG - chr3_1:79925755-79925774 None:intergenic 20.0%
!! TACCAACAATATTATACTAA+TGG - chr3_1:79926684-79926703 None:intergenic 20.0%
!! ATTAGTATAATATTGTTGGT+AGG + chr3_1:79926683-79926702 Msa0379040:intron 20.0%
!! TTAGTATAATATTGTTGGTA+GGG + chr3_1:79926684-79926703 Msa0379040:intron 20.0%
!! CGTGAAAAAATATGTTAATA+TGG + chr3_1:79927525-79927544 Msa0379040:intron 20.0%
!!! TATTTTGTTAATGGCTAATA+AGG - chr3_1:79927590-79927609 None:intergenic 20.0%
!! ATTCAAAATGAACTAACAAA+GGG - chr3_1:79928292-79928311 None:intergenic 20.0%
! TTGCTTCATTGTATTATGTT+AGG + chr3_1:79924465-79924484 Msa0379040:intron 25.0%
!!! ACTTGACATTTTTTGTTACT+TGG + chr3_1:79924528-79924547 Msa0379040:intron 25.0%
! GTTCAATATATTTATGCTAC+TGG + chr3_1:79924564-79924583 Msa0379040:intron 25.0%
! TGGAGTTTATAAAATGAAAG+GGG + chr3_1:79924835-79924854 Msa0379040:CDS 25.0%
! GTAATTGTAGAGATTATCAT+AGG + chr3_1:79925059-79925078 Msa0379040:CDS 25.0%
! ACATAAGTTATGAACTAACT+TGG + chr3_1:79925536-79925555 Msa0379040:intron 25.0%
!!! TTAGTTTGTAGATGCATTTA+TGG + chr3_1:79925632-79925651 Msa0379040:intron 25.0%
!!! ACGTTTTCAATCTAAAATGT+CGG - chr3_1:79925852-79925871 None:intergenic 25.0%
! AAATTAAGATTCAGGACTTA+AGG - chr3_1:79926179-79926198 None:intergenic 25.0%
! TCTTAATTTCCTTCATGTAT+AGG + chr3_1:79926190-79926209 Msa0379040:intron 25.0%
! CCTAATAATTTCAGCATTAT+CGG + chr3_1:79926450-79926469 Msa0379040:intron 25.0%
! ATATATTTCCGTATCTTTGT+GGG - chr3_1:79926541-79926560 None:intergenic 25.0%
! TATATATTTCCGTATCTTTG+TGG - chr3_1:79926542-79926561 None:intergenic 25.0%
! TATACTTATATCAGATGAGT+AGG + chr3_1:79926566-79926585 Msa0379040:intron 25.0%
! TGATTAATTAATCGCATGAA+AGG - chr3_1:79926773-79926792 None:intergenic 25.0%
! TTGAAGCTTCTATAAAGTTA+CGG - chr3_1:79926824-79926843 None:intergenic 25.0%
! TTTATAGAAGCTTCAAATTC+AGG + chr3_1:79926828-79926847 Msa0379040:intron 25.0%
! TTGATGTATGTGGTTAAATA+GGG + chr3_1:79926961-79926980 Msa0379040:intron 25.0%
! ATAGGGAGTAATTAACTAAT+CGG + chr3_1:79926978-79926997 Msa0379040:intron 25.0%
!!! CAATGAAAGCATTAAATGTT+GGG - chr3_1:79927029-79927048 None:intergenic 25.0%
! CAACATTTAATGCTTTCATT+GGG + chr3_1:79927028-79927047 Msa0379040:intron 25.0%
! ATACTACATTTATTCTACGT+GGG - chr3_1:79927218-79927237 None:intergenic 25.0%
!! AAATAACTGATAGCGTAAAT+TGG + chr3_1:79927346-79927365 Msa0379040:intron 25.0%
!!! TTTTACTGCTATACTTTTTC+AGG + chr3_1:79927672-79927691 Msa0379040:intron 25.0%
!! GATAAACAAGATATTTTTCC+TGG + chr3_1:79927822-79927841 Msa0379040:CDS 25.0%
! AATTTCTATTCCCATTGATA+GGG - chr3_1:79928245-79928264 None:intergenic 25.0%
! AAATTTCTATTCCCATTGAT+AGG - chr3_1:79928246-79928265 None:intergenic 25.0%
! CATTCAAAATGAACTAACAA+AGG - chr3_1:79928293-79928312 None:intergenic 25.0%
! CATACATTACTTTCTCAATA+AGG - chr3_1:79928351-79928370 None:intergenic 25.0%
! AATTTATGATCTCTATCATG+AGG + chr3_1:79928372-79928391 Msa0379040:three_prime_UTR 25.0%
! TAGGCAACAAAATTCATAAA+TGG + chr3_1:79928408-79928427 Msa0379040:three_prime_UTR 25.0%
! AGGCAACAAAATTCATAAAT+GGG + chr3_1:79928409-79928428 Msa0379040:three_prime_UTR 25.0%
! TTACAAGAAGTATATCATCC+AGG + chr3_1:79924182-79924201 Msa0379040:five_prime_UTR 30.0%
CCATACATGAAATGAAATTG+TGG - chr3_1:79924254-79924273 None:intergenic 30.0%
CCACAATTTCATTTCATGTA+TGG + chr3_1:79924251-79924270 Msa0379040:five_prime_UTR 30.0%
TGTTAGGTAACCTTAATTTC+AGG + chr3_1:79924481-79924500 Msa0379040:intron 30.0%
TTTAGGTAACCAATCAAAGA+AGG + chr3_1:79924648-79924667 Msa0379040:intron 30.0%
GCTGTTATTATATTATGGAG+TGG + chr3_1:79924726-79924745 Msa0379040:exon 30.0%
ATTACCCAACATAGAAACAA+TGG + chr3_1:79924796-79924815 Msa0379040:CDS 30.0%
!! TCTTCCATTGTTTCTATGTT+GGG - chr3_1:79924803-79924822 None:intergenic 30.0%
!! TTCTTCCATTGTTTCTATGT+TGG - chr3_1:79924804-79924823 None:intergenic 30.0%
ATGGAAGAATCAAACAGATT+TGG + chr3_1:79924815-79924834 Msa0379040:CDS 30.0%
!!! TTTTCTGTTGATTTGAAGCT+TGG + chr3_1:79924860-79924879 Msa0379040:CDS 30.0%
TTTACTTATAAATGTGACGG+AGG - chr3_1:79925389-79925408 None:intergenic 30.0%
GAAAGGTAATTAAGATGCTA+AGG - chr3_1:79925738-79925757 None:intergenic 30.0%
! ATGTGTTGAGAGATTCTTTT+TGG - chr3_1:79925773-79925792 None:intergenic 30.0%
! TTTTAGATTGAAAACGTGTC+TGG + chr3_1:79925855-79925874 Msa0379040:intron 30.0%
GCATGCATATGAAAAACTTA+TGG - chr3_1:79926006-79926025 None:intergenic 30.0%
CATGAAGGAAATTAAGATTC+AGG - chr3_1:79926187-79926206 None:intergenic 30.0%
ATGAAAGAAAAAGAAGCTGT+AGG + chr3_1:79926235-79926254 Msa0379040:CDS 30.0%
!!! AGTTTTTTGTCCAATTACCA+AGG + chr3_1:79926327-79926346 Msa0379040:CDS 30.0%
ATCTAGGCATATATGCAAAT+GGG - chr3_1:79926418-79926437 None:intergenic 30.0%
CCGATAATGCTGAAATTATT+AGG - chr3_1:79926453-79926472 None:intergenic 30.0%
TATATTTCCGTATCTTTGTG+GGG - chr3_1:79926540-79926559 None:intergenic 30.0%
GGCCATTAGTATAATATTGT+TGG + chr3_1:79926679-79926698 Msa0379040:intron 30.0%
! TGAAGCAAACTCTTTTTGTT+TGG - chr3_1:79926722-79926741 None:intergenic 30.0%
CAAAATCTCGATGAAATATC+AGG - chr3_1:79926866-79926885 None:intergenic 30.0%
! CTGATATTTCATCGAGATTT+TGG + chr3_1:79926864-79926883 Msa0379040:intron 30.0%
CTTATAACTTACTGTCTGTT+TGG - chr3_1:79926906-79926925 None:intergenic 30.0%
!! ACCAAAAAAGTTGATGTATG+TGG + chr3_1:79926951-79926970 Msa0379040:intron 30.0%
!!! ACCACATACATCAACTTTTT+TGG - chr3_1:79926955-79926974 None:intergenic 30.0%
GTTGATGTATGTGGTTAAAT+AGG + chr3_1:79926960-79926979 Msa0379040:intron 30.0%
TAGGGAGTAATTAACTAATC+GGG + chr3_1:79926979-79926998 Msa0379040:intron 30.0%
!! CCAATGAAAGCATTAAATGT+TGG - chr3_1:79927030-79927049 None:intergenic 30.0%
CCAACATTTAATGCTTTCAT+TGG + chr3_1:79927027-79927046 Msa0379040:intron 30.0%
ACTCATCTTTAAGTAATCGA+TGG - chr3_1:79927098-79927117 None:intergenic 30.0%
CATACTACATTTATTCTACG+TGG - chr3_1:79927219-79927238 None:intergenic 30.0%
TTGTGTCTAACCTAATTTCT+AGG + chr3_1:79927306-79927325 Msa0379040:intron 30.0%
GATAACATGACCTAGAAATT+AGG - chr3_1:79927319-79927338 None:intergenic 30.0%
TTCACGAGTGATAAAATAGT+GGG - chr3_1:79927511-79927530 None:intergenic 30.0%
TTTCACGAGTGATAAAATAG+TGG - chr3_1:79927512-79927531 None:intergenic 30.0%
!! TGATAATGGTTTGGATCAAA+TGG + chr3_1:79928040-79928059 Msa0379040:CDS 30.0%
TCAACTATTTCCCTATCAAT+GGG + chr3_1:79928232-79928251 Msa0379040:CDS 30.0%
TTGAATGAATTCTTTACACC+TGG + chr3_1:79928306-79928325 Msa0379040:three_prime_UTR 30.0%
ATGAGGAGAAAAGAAAAACT+AGG + chr3_1:79928389-79928408 Msa0379040:three_prime_UTR 30.0%
TATAGTAGCTTGAGAGAGAA+AGG - chr3_1:79924080-79924099 None:intergenic 35.0%
TCTCAAGCTACTATACATAC+TGG + chr3_1:79924085-79924104 Msa0379040:five_prime_UTR 35.0%
CTCAAGCTACTATACATACT+GGG + chr3_1:79924086-79924105 Msa0379040:five_prime_UTR 35.0%
GGAAGAACAATCCCTATATT+TGG + chr3_1:79924117-79924136 Msa0379040:five_prime_UTR 35.0%
!! GATAATGGATAAGAGATCAG+AGG - chr3_1:79924224-79924243 None:intergenic 35.0%
AATTGTGGATCACAGGATAA+TGG - chr3_1:79924239-79924258 None:intergenic 35.0%
GAAATGAAATTGTGGATCAC+AGG - chr3_1:79924246-79924265 None:intergenic 35.0%
TACACTGTATTGTTAGGTGA+GGG - chr3_1:79924298-79924317 None:intergenic 35.0%
TAACAAAGTTCCAAAGACAC+TGG - chr3_1:79924509-79924528 None:intergenic 35.0%
CTTCAAAGTCCTTCTTTGAT+TGG - chr3_1:79924660-79924679 None:intergenic 35.0%
!! GAATTTGAAAGCACCTTCTT+GGG + chr3_1:79924748-79924767 Msa0379040:CDS 35.0%
ACAACAGCATCATTAGACAA+AGG - chr3_1:79924923-79924942 None:intergenic 35.0%
!! AGAAGTAGGTGTTGCAATTT+TGG - chr3_1:79924951-79924970 None:intergenic 35.0%
ATTGACAGTTTCTTGTCTTG+TGG + chr3_1:79925015-79925034 Msa0379040:CDS 35.0%
AGATTATCATAGGCGTCATA+AGG + chr3_1:79925069-79925088 Msa0379040:CDS 35.0%
! CAATTTGTGGCCTTAAACAA+AGG + chr3_1:79925125-79925144 Msa0379040:CDS 35.0%
ATATATACCTGCTACACTGT+TGG - chr3_1:79925156-79925175 None:intergenic 35.0%
! GACTGATTTCATATAGCATG+TGG - chr3_1:79925264-79925283 None:intergenic 35.0%
TTCCATTCCATTGTTCATGT+TGG + chr3_1:79925686-79925705 Msa0379040:intron 35.0%
TAAGAAGCCAACATGAACAA+TGG - chr3_1:79925696-79925715 None:intergenic 35.0%
!! TCTAAAATGTCGGTGTTGTA+TGG - chr3_1:79925842-79925861 None:intergenic 35.0%
CGAATGAAACCTATACATGA+AGG - chr3_1:79926202-79926221 None:intergenic 35.0%
TTTGTCCAATTACCAAGGTA+AGG + chr3_1:79926332-79926351 Msa0379040:intron 35.0%
CATCTAGGCATATATGCAAA+TGG - chr3_1:79926419-79926438 None:intergenic 35.0%
TTGCATATATGCCTAGATGA+AGG + chr3_1:79926420-79926439 Msa0379040:intron 35.0%
GCATGCATCAATTCATATCT+AGG - chr3_1:79926504-79926523 None:intergenic 35.0%
TAAAGATCCCCACAAAGATA+CGG + chr3_1:79926530-79926549 Msa0379040:intron 35.0%
ATAGATGAGTGCGTTTGATT+TGG + chr3_1:79926619-79926638 Msa0379040:intron 35.0%
AAGCTTCTATAAAGTTACGG+TGG - chr3_1:79926821-79926840 None:intergenic 35.0%
GAGTAATTAACTAATCGGGT+TGG + chr3_1:79926983-79927002 Msa0379040:intron 35.0%
TTAATGCTTTCATTGGGAGT+TGG + chr3_1:79927034-79927053 Msa0379040:intron 35.0%
!! CCTATAAGTAGTCATTTTCG+TGG - chr3_1:79927060-79927079 None:intergenic 35.0%
CCACGAAAATGACTACTTAT+AGG + chr3_1:79927057-79927076 Msa0379040:intron 35.0%
GAAAATGACTACTTATAGGC+TGG + chr3_1:79927061-79927080 Msa0379040:intron 35.0%
ACTACTTATAGGCTGGATTA+AGG + chr3_1:79927068-79927087 Msa0379040:intron 35.0%
AAATGTCTCGACTATTAGGT+AGG - chr3_1:79927258-79927277 None:intergenic 35.0%
GAGAAAATGTCTCGACTATT+AGG - chr3_1:79927262-79927281 None:intergenic 35.0%
TCTAGGTCATGTTATCCTTA+AGG + chr3_1:79927323-79927342 Msa0379040:intron 35.0%
! CGCTATCAGTTATTTCCTTA+AGG - chr3_1:79927341-79927360 None:intergenic 35.0%
! ACCTTACGAGTCAATTTTGT+AGG + chr3_1:79927416-79927435 Msa0379040:intron 35.0%
!! TCCTACAAAATTGACTCGTA+AGG - chr3_1:79927420-79927439 None:intergenic 35.0%
GGCTAATAAGGAACATGATT+AGG - chr3_1:79927578-79927597 None:intergenic 35.0%
ATGGCAGTAGAACTTGAAAA+GGG - chr3_1:79927711-79927730 None:intergenic 35.0%
TATCAACCACATGTACTTGT+TGG - chr3_1:79927806-79927825 None:intergenic 35.0%
!! TAACAATAGCTTTGAGTCCA+TGG + chr3_1:79928118-79928137 Msa0379040:CDS 35.0%
TTGTTCCTCGTTGTATAACA+TGG + chr3_1:79928178-79928197 Msa0379040:CDS 35.0%
TGTTCCTCGTTGTATAACAT+GGG + chr3_1:79928179-79928198 Msa0379040:CDS 35.0%
! TTGTATAACATGGGTTCTGA+TGG + chr3_1:79928188-79928207 Msa0379040:CDS 35.0%
CATTGATAGGGAAATAGTTG+AGG - chr3_1:79928233-79928252 None:intergenic 35.0%
CTCAACTATTTCCCTATCAA+TGG + chr3_1:79928231-79928250 Msa0379040:CDS 35.0%
AAACCATAACTAAGTAGTCC+AGG - chr3_1:79928327-79928346 None:intergenic 35.0%
TAGCTTGAGAGAGAAAGGAA+AGG - chr3_1:79924075-79924094 None:intergenic 40.0%
AGCTACTATACATACTGGGA+AGG + chr3_1:79924090-79924109 Msa0379040:five_prime_UTR 40.0%
TATACATACTGGGAAGGAAC+AGG + chr3_1:79924096-79924115 Msa0379040:five_prime_UTR 40.0%
ATCAGAGGAACAGTGTTAAG+GGG - chr3_1:79924209-79924228 None:intergenic 40.0%
GATCAGAGGAACAGTGTTAA+GGG - chr3_1:79924210-79924229 None:intergenic 40.0%
AGATCAGAGGAACAGTGTTA+AGG - chr3_1:79924211-79924230 None:intergenic 40.0%
GTACACTGTATTGTTAGGTG+AGG - chr3_1:79924299-79924318 None:intergenic 40.0%
GACACTGGAACCTGAAATTA+AGG - chr3_1:79924494-79924513 None:intergenic 40.0%
!! ATTTCAGGTTCCAGTGTCTT+TGG + chr3_1:79924496-79924515 Msa0379040:intron 40.0%
!! GGAATTTGAAAGCACCTTCT+TGG + chr3_1:79924747-79924766 Msa0379040:CDS 40.0%
! AAAGCACCTTCTTGGGATTT+GGG + chr3_1:79924755-79924774 Msa0379040:CDS 40.0%
!! TGTTGATTTGAAGCTTGGTC+AGG + chr3_1:79924865-79924884 Msa0379040:CDS 40.0%
! ATTTGAAGCTTGGTCAGGTT+GGG + chr3_1:79924870-79924889 Msa0379040:CDS 40.0%
GCATCATTAGACAAAGGAAG+TGG - chr3_1:79924917-79924936 None:intergenic 40.0%
GAAGATCCTGAAGAAGAAGT+AGG - chr3_1:79924965-79924984 None:intergenic 40.0%
ACAGTTTCTTGTCTTGTGGA+TGG + chr3_1:79925019-79925038 Msa0379040:CDS 40.0%
CAGTTTCTTGTCTTGTGGAT+GGG + chr3_1:79925020-79925039 Msa0379040:CDS 40.0%
!! AATTGTAACCTCTGGAGTCT+TGG - chr3_1:79925110-79925129 None:intergenic 40.0%
ACTCCAGAGGTTACAATTTG+TGG + chr3_1:79925112-79925131 Msa0379040:CDS 40.0%
! GTTGGCAGAACCTTTGTTTA+AGG - chr3_1:79925138-79925157 None:intergenic 40.0%
GCTAACATGAACGATGGATA+AGG - chr3_1:79925666-79925685 None:intergenic 40.0%
ATGGAAGCTAACATGAACGA+TGG - chr3_1:79925672-79925691 None:intergenic 40.0%
AGCCAACATGAACAATGGAA+TGG - chr3_1:79925691-79925710 None:intergenic 40.0%
CTCTCAACACATAAGAAACC+TGG + chr3_1:79925781-79925800 Msa0379040:intron 40.0%
TCAACACATAAGAAACCTGG+AGG + chr3_1:79925784-79925803 Msa0379040:intron 40.0%
AATTATAAAGCGGAACCTCC+AGG - chr3_1:79925802-79925821 None:intergenic 40.0%
TTCACATGTTAACTCGTGAC+TGG + chr3_1:79925977-79925996 Msa0379040:intron 40.0%
CGAGTTTAAACACAAACGCA+AGG - chr3_1:79926098-79926117 None:intergenic 40.0%
GCGTTTGTGTTTAAACTCGA+TGG + chr3_1:79926099-79926118 Msa0379040:intron 40.0%
CATGTATAGGTTTCATTCGC+TGG + chr3_1:79926203-79926222 Msa0379040:intron 40.0%
AGCTGTAGGAAACGTTTAGA+TGG + chr3_1:79926249-79926268 Msa0379040:CDS 40.0%
! GCTGTGGTTTTCTTCTTCTT+CGG - chr3_1:79926281-79926300 None:intergenic 40.0%
TTGGACAAAAAACTACCAGC+AGG - chr3_1:79926321-79926340 None:intergenic 40.0%
TCCAATTACCAAGGTAAGGT+TGG + chr3_1:79926336-79926355 Msa0379040:intron 40.0%
! ACCAACCTTACCTTGGTAAT+TGG - chr3_1:79926340-79926359 None:intergenic 40.0%
CTAACTAACCAACCTTACCT+TGG - chr3_1:79926347-79926366 None:intergenic 40.0%
AACCACATTGTTATCCTCAG+TGG + chr3_1:79926386-79926405 Msa0379040:intron 40.0%
! TAGGTTGAACACCTTCATCT+AGG - chr3_1:79926434-79926453 None:intergenic 40.0%
GTATCTTTGTGGGGATCTTT+AGG - chr3_1:79926531-79926550 None:intergenic 40.0%
AAACGCACTCATCTATCCAA+GGG - chr3_1:79926615-79926634 None:intergenic 40.0%
! ATAGTCGAGACATTTTCTCG+TGG + chr3_1:79927263-79927282 Msa0379040:intron 40.0%
GTTAGACACAATACCGCAAA+AGG - chr3_1:79927297-79927316 None:intergenic 40.0%
ACTTGAAAAGGGTAGCAACT+GGG - chr3_1:79927700-79927719 None:intergenic 40.0%
AACTTGAAAAGGGTAGCAAC+TGG - chr3_1:79927701-79927720 None:intergenic 40.0%
CATGGCAGTAGAACTTGAAA+AGG - chr3_1:79927712-79927731 None:intergenic 40.0%
!!! CTTTTCAAGTTCTACTGCCA+TGG + chr3_1:79927710-79927729 Msa0379040:CDS 40.0%
CTCATTTCTTCCTGTGAAAG+TGG + chr3_1:79927756-79927775 Msa0379040:CDS 40.0%
TTTCTTCCTGTGAAAGTGGT+AGG + chr3_1:79927760-79927779 Msa0379040:CDS 40.0%
!!! GTACTTGTTGGTTTTGGTTG+TGG - chr3_1:79927794-79927813 None:intergenic 40.0%
!!! CCACATGTACTTGTTGGTTT+TGG - chr3_1:79927800-79927819 None:intergenic 40.0%
CCAAAACCAACAAGTACATG+TGG + chr3_1:79927797-79927816 Msa0379040:CDS 40.0%
! TTGCTACTTGTCCTAAGAAG+AGG - chr3_1:79927936-79927955 None:intergenic 40.0%
!! GCACACATCTGATAATGGTT+TGG + chr3_1:79928031-79928050 Msa0379040:CDS 40.0%
!! AATAGCTTTGAGTCCATGGA+AGG + chr3_1:79928122-79928141 Msa0379040:CDS 40.0%
AGAACCCATGTTATACAACG+AGG - chr3_1:79928186-79928205 None:intergenic 40.0%
ACACCTGGACTACTTAGTTA+TGG + chr3_1:79928321-79928340 Msa0379040:three_prime_UTR 40.0%
CTTGAGAGAGAAAGGAAAGG+AGG - chr3_1:79924072-79924091 None:intergenic 45.0%
! GGAGGGTACACTGTATTGTT+AGG - chr3_1:79924304-79924323 None:intergenic 45.0%
TAGCAGACAATAGCAGCAGA+AGG - chr3_1:79924380-79924399 None:intergenic 45.0%
!! GAAAGCACCTTCTTGGGATT+TGG + chr3_1:79924754-79924773 Msa0379040:CDS 45.0%
AAGCACCTTCTTGGGATTTG+GGG + chr3_1:79924756-79924775 Msa0379040:CDS 45.0%
! GATTTGAAGCTTGGTCAGGT+TGG + chr3_1:79924869-79924888 Msa0379040:CDS 45.0%
AGGAAGTGGTGATTGATCAG+TGG - chr3_1:79924903-79924922 None:intergenic 45.0%
GCAACACCTACTTCTTCTTC+AGG + chr3_1:79924956-79924975 Msa0379040:CDS 45.0%
ACTTCATTCCAAGACTCCAG+AGG + chr3_1:79925099-79925118 Msa0379040:CDS 45.0%
AGGCCACAAATTGTAACCTC+TGG - chr3_1:79925118-79925137 None:intergenic 45.0%
CTGGTATGTCGAACATGAGT+TGG + chr3_1:79925874-79925893 Msa0379040:intron 45.0%
!! TGTCGAACATGAGTTGGTGT+CGG + chr3_1:79925880-79925899 Msa0379040:intron 45.0%
GTCCACTGAGGATAACAATG+TGG - chr3_1:79926391-79926410 None:intergenic 45.0%
CATTGTTATCCTCAGTGGAC+TGG + chr3_1:79926391-79926410 Msa0379040:intron 45.0%
ATGTGATTACGCAATGCCCT+TGG + chr3_1:79926596-79926615 Msa0379040:intron 45.0%
CAAACGCACTCATCTATCCA+AGG - chr3_1:79926616-79926635 None:intergenic 45.0%
!! ATCGGGTTGGACTCTTTCAT+AGG + chr3_1:79926996-79927015 Msa0379040:intron 45.0%
TAATGGTAGCCCTTTCCTCT+CGG - chr3_1:79927128-79927147 None:intergenic 45.0%
AAAGGGCTACCATTAGAGCA+AGG + chr3_1:79927133-79927152 Msa0379040:intron 45.0%
ACTCTATCGCCTTGCTCTAA+TGG - chr3_1:79927145-79927164 None:intergenic 45.0%
TCAAGACGGGTAGCAATGTT+TGG + chr3_1:79927189-79927208 Msa0379040:intron 45.0%
!! TATTAGGTAGGAGAGCGTCA+CGG - chr3_1:79927246-79927265 None:intergenic 45.0%
! CGTGGACTTTAGTCCTTTTG+CGG + chr3_1:79927281-79927300 Msa0379040:intron 45.0%
ACTCCAAGCTGAATTCACCA+TGG - chr3_1:79927730-79927749 None:intergenic 45.0%
GTGAATTCAGCTTGGAGTAG+CGG + chr3_1:79927732-79927751 Msa0379040:CDS 45.0%
AGTTGCTTCCCTTCTCCATA+GGG - chr3_1:79927861-79927880 None:intergenic 45.0%
AAGTTGCTTCCCTTCTCCAT+AGG - chr3_1:79927862-79927881 None:intergenic 45.0%
ACGAAACCACACCTCTTCTT+AGG + chr3_1:79927922-79927941 Msa0379040:CDS 45.0%
ACTTGTCCTAAGAAGAGGTG+TGG - chr3_1:79927931-79927950 None:intergenic 45.0%
CAGACGCACACATCTGATAA+TGG + chr3_1:79928026-79928045 Msa0379040:CDS 45.0%
TGCATACGGGACATTGAATG+AGG - chr3_1:79928074-79928093 None:intergenic 45.0%
!! AAGGAGTGTTGGTCCCAAAT+GGG + chr3_1:79928141-79928160 Msa0379040:CDS 45.0%
GATCACTCTCACTCCCATTT+GGG - chr3_1:79928157-79928176 None:intergenic 45.0%
TGATCACTCTCACTCCCATT+TGG - chr3_1:79928158-79928177 None:intergenic 45.0%
! ATGGGTTCTGATGGATCACA+AGG + chr3_1:79928197-79928216 Msa0379040:CDS 45.0%
GACATGGATTCTGTGAGGGA+GGG - chr3_1:79924321-79924340 None:intergenic 50.0%
TGACATGGATTCTGTGAGGG+AGG - chr3_1:79924322-79924341 None:intergenic 50.0%
TCCCTCACAGAATCCATGTC+AGG + chr3_1:79924321-79924340 Msa0379040:five_prime_UTR 50.0%
GCCTGACATGGATTCTGTGA+GGG - chr3_1:79924325-79924344 None:intergenic 50.0%
TGCCTGACATGGATTCTGTG+AGG - chr3_1:79924326-79924345 None:intergenic 50.0%
AATCCATGTCAGGCAACGAG+TGG + chr3_1:79924331-79924350 Msa0379040:five_prime_UTR 50.0%
AGCACCTTCTTGGGATTTGG+GGG + chr3_1:79924757-79924776 Msa0379040:CDS 50.0%
ATACCCCCCAAATCCCAAGA+AGG - chr3_1:79924764-79924783 None:intergenic 50.0%
! GGATTTGGGGGGTATAGAAG+AGG + chr3_1:79924769-79924788 Msa0379040:CDS 50.0%
CATGCGTGTCAATGTCGTGT+CGG - chr3_1:79925909-79925928 None:intergenic 50.0%
GAGCGCGACAGAGACATAAA+TGG - chr3_1:79926646-79926665 None:intergenic 50.0%
TTATGTCTCTGTCGCGCTCA+TGG + chr3_1:79926647-79926666 Msa0379040:intron 50.0%
TCGCGCTCATGGCAATCTAA+TGG + chr3_1:79926658-79926677 Msa0379040:intron 50.0%
CAAGGCGATAGAGTGAAAGC+CGG + chr3_1:79927151-79927170 Msa0379040:intron 50.0%
TTGAGAGTTGACGTCCACAC+CGG - chr3_1:79927173-79927192 None:intergenic 50.0%
GTGGACGTCAACTCTCAAGA+CGG + chr3_1:79927175-79927194 Msa0379040:intron 50.0%
TGGACGTCAACTCTCAAGAC+GGG + chr3_1:79927176-79927195 Msa0379040:intron 50.0%
CTGCCATGGTGAATTCAGCT+TGG + chr3_1:79927724-79927743 Msa0379040:CDS 50.0%
GTGAAGCCTACCACTTTCAC+AGG - chr3_1:79927769-79927788 None:intergenic 50.0%
TAGGGGGTTTGAGTAGAACC+AGG - chr3_1:79927843-79927862 None:intergenic 50.0%
GGTTCTACTCAAACCCCCTA+TGG + chr3_1:79927843-79927862 Msa0379040:CDS 50.0%
ACTCAAACCCCCTATGGAGA+AGG + chr3_1:79927849-79927868 Msa0379040:CDS 50.0%
CTCAAACCCCCTATGGAGAA+GGG + chr3_1:79927850-79927869 Msa0379040:CDS 50.0%
TTGCTTCCCTTCTCCATAGG+GGG - chr3_1:79927859-79927878 None:intergenic 50.0%
GTTGCTTCCCTTCTCCATAG+GGG - chr3_1:79927860-79927879 None:intergenic 50.0%
! GACAGAAGAGAGAGAGCACA+AGG - chr3_1:79927999-79928018 None:intergenic 50.0%
AATGTCCCGTATGCAGCCTT+TGG + chr3_1:79928079-79928098 Msa0379040:CDS 50.0%
ATGTCCCGTATGCAGCCTTT+GGG + chr3_1:79928080-79928099 Msa0379040:CDS 50.0%
TCAGTCCCAAAGGCTGCATA+CGG - chr3_1:79928088-79928107 None:intergenic 50.0%
! TGAGTCCATGGAAGGAGTGT+TGG + chr3_1:79928130-79928149 Msa0379040:CDS 50.0%
!! GAAGGAGTGTTGGTCCCAAA+TGG + chr3_1:79928140-79928159 Msa0379040:CDS 50.0%
GGAACAGTGTTAAGGGGACC+TGG - chr3_1:79924203-79924222 None:intergenic 55.0%
CATGTCAGGCAACGAGTGGT+CGG + chr3_1:79924335-79924354 Msa0379040:five_prime_UTR 55.0%
GCACCTTCTTGGGATTTGGG+GGG + chr3_1:79924758-79924777 Msa0379040:CDS 55.0%
GGTTCTGCCAACAGTGTAGC+AGG + chr3_1:79925146-79925165 Msa0379040:CDS 55.0%
CAAATGGGTCCAGTCCACTG+AGG - chr3_1:79926403-79926422 None:intergenic 55.0%
AGATGAGTGAAACCGCCGAG+AGG + chr3_1:79927110-79927129 Msa0379040:intron 55.0%
AGTGAAACCGCCGAGAGGAA+AGG + chr3_1:79927115-79927134 Msa0379040:intron 55.0%
GTGAAACCGCCGAGAGGAAA+GGG + chr3_1:79927116-79927135 Msa0379040:intron 55.0%
CGATAGAGTGAAAGCCGGTG+TGG + chr3_1:79927156-79927175 Msa0379040:intron 55.0%
CAGTCCCAAAGGCTGCATAC+GGG - chr3_1:79928087-79928106 None:intergenic 55.0%
CCATGCAGACTCAGTCCCAA+AGG - chr3_1:79928098-79928117 None:intergenic 55.0%
!! CCTTTGGGACTGAGTCTGCA+TGG + chr3_1:79928095-79928114 Msa0379040:CDS 55.0%
TGGGACCAACACTCCTTCCA+TGG - chr3_1:79928138-79928157 None:intergenic 55.0%
CGACCACTCGTTGCCTGACA+TGG - chr3_1:79924337-79924356 None:intergenic 60.0%
AGGCAACGAGTGGTCGGTGA+AGG + chr3_1:79924341-79924360 Msa0379040:five_prime_UTR 60.0%
CGCGTGATAGGTTCAGGCTG+TGG - chr3_1:79926297-79926316 None:intergenic 60.0%
GCAGGTCGCGTGATAGGTTC+AGG - chr3_1:79926303-79926322 None:intergenic 60.0%
GAACCTATCACGCGACCTGC+TGG + chr3_1:79926303-79926322 Msa0379040:CDS 60.0%
CTACCAGCAGGTCGCGTGAT+AGG - chr3_1:79926309-79926328 None:intergenic 60.0%
TGGTAGCCCTTTCCTCTCGG+CGG - chr3_1:79927125-79927144 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79924014 79928447 79924014 ID=Msa0379040;Name=Msa0379040
chr3_1 mRNA 79924014 79928447 79924014 ID=Msa0379040-mRNA-1;Parent=Msa0379040;Name=Msa0379040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=477|1|1|1|0.66|0.5|4|188|376
chr3_1 exon 79924014 79924403 79924014 ID=Msa0379040-mRNA-1:exon:19823;Parent=Msa0379040-mRNA-1
chr3_1 exon 79924653 79925167 79924653 ID=Msa0379040-mRNA-1:exon:19824;Parent=Msa0379040-mRNA-1
chr3_1 exon 79926212 79926348 79926212 ID=Msa0379040-mRNA-1:exon:19825;Parent=Msa0379040-mRNA-1
chr3_1 exon 79927694 79928447 79927694 ID=Msa0379040-mRNA-1:exon:19826;Parent=Msa0379040-mRNA-1
chr3_1 five_prime_UTR 79924014 79924403 79924014 ID=Msa0379040-mRNA-1:five_prime_utr;Parent=Msa0379040-mRNA-1
chr3_1 five_prime_UTR 79924653 79924739 79924653 ID=Msa0379040-mRNA-1:five_prime_utr;Parent=Msa0379040-mRNA-1
chr3_1 CDS 79924740 79925167 79924740 ID=Msa0379040-mRNA-1:cds;Parent=Msa0379040-mRNA-1
chr3_1 CDS 79926212 79926348 79926212 ID=Msa0379040-mRNA-1:cds;Parent=Msa0379040-mRNA-1
chr3_1 CDS 79927694 79928259 79927694 ID=Msa0379040-mRNA-1:cds;Parent=Msa0379040-mRNA-1
chr3_1 three_prime_UTR 79928260 79928447 79928260 ID=Msa0379040-mRNA-1:three_prime_utr;Parent=Msa0379040-mRNA-1
Gene Sequence

>Msa0379040

ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTTGGGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAGGTTGGGAACTCTGCCACTGATCAATCACCACTTCCTTTGTCTAATGATGCTGTTGTTGTCTCCAAAATTGCAACACCTACTTCTTCTTCAGGATCTTCTAAGAGAGCTAGAGCTATGAATAATGCAACATTGACAGTTTCTTGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAGACTCCAGAGGTTACAATTTGTGGCCTTAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGAAGAAGAAGAAAACCACAGCCTGAACCTATCACGCGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCCTTTTCAAGTTCTACTGCCATGGTGAATTCAGCTTGGAGTAGCGGACTCATTTCTTCCTGTGAAAGTGGTAGGCTTCACATCCACAACCAAAACCAACAAGTACATGTGGTTGATAAACAAGATATTTTTCCTGGTTCTACTCAAACCCCCTATGGAGAAGGGAAGCAACTTCAATTCTTACACAATGACAACAACAATCTCTCACTTCATAACGAAACCACACCTCTTCTTAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAACAACTTCAGTACACGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACATCTGATAATGGTTTGGATCAAATGGTGCAGCAGCCTCATTCAATGTCCCGTATGCAGCCTTTGGGACTGAGTCTGCATGGTAACAATAGCTTTGAGTCCATGGAAGGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCGTTGTATAACATGGGTTCTGATGGATCACAAGGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG
Protein sequence

>Msa0379040

MEWNLKAPSWDLGGIEEATLPNIETMEESNRFGVYKMKGEFSVDLKLGQVGNSATDQSPLPLSNDAVVVSKIATPTSSSGSSKRARAMNNATLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTICGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTAMVNSAWSSGLISSCESGRLHIHNQNQQVHVVDKQDIFPGSTQTPYGEGKQLQFLHNDNNNLSLHNETTPLLRTSSKMFCDSLTTSVHESPCALSLLSSSQTHTSDNGLDQMVQQPHSMSRMQPLGLSLHGNNSFESMEGVLVPNGSESDHCSSLYNMGSDGSQGNDAPQLFPYQWE*