AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475030 MtrunA17_Chr3g0132091 94.602 352 16 3 26 375 1 351 0.0 671
Msa0475030 MtrunA17_Chr8g0386271 59.314 408 115 20 1 375 1 390 9.87e-136 392
Msa0475030 MtrunA17_Chr7g0224821 34.005 397 210 11 1 375 1 367 4.67e-55 185
Msa0475030 MtrunA17_Chr4g0061651 54.745 137 41 4 43 171 75 198 1.61e-38 143
Msa0475030 MtrunA17_Chr2g0308321 50.649 154 67 3 43 191 122 271 2.01e-38 144
Msa0475030 MtrunA17_Chr3g0122411 50.000 126 61 2 82 205 151 276 1.44e-36 137
Msa0475030 MtrunA17_Chr5g0420051 43.871 155 78 2 43 194 131 279 1.76e-36 137
Msa0475030 MtrunA17_Chr7g0231911 58.696 92 38 0 86 177 139 230 1.15e-33 127
Msa0475030 MtrunA17_Chr7g0258471 36.820 239 118 5 96 329 142 352 6.34e-32 124
Msa0475030 MtrunA17_Chr8g0360361 64.103 78 28 0 96 173 65 142 5.45e-31 116
Msa0475030 MtrunA17_Chr4g0046991 60.215 93 34 1 77 169 57 146 8.40e-31 115
Msa0475030 MtrunA17_Chr8g0334671 57.843 102 33 1 70 171 171 262 9.70e-31 119
Msa0475030 MtrunA17_Chr1g0162871 46.715 137 67 2 96 232 104 234 3.94e-30 122
Msa0475030 MtrunA17_Chr1g0194121 51.376 109 51 1 73 181 124 230 5.17e-30 122
Msa0475030 MtrunA17_Chr2g0302791 50.450 111 51 1 75 181 114 224 6.41e-30 121
Msa0475030 MtrunA17_Chr2g0282521 61.905 84 32 0 90 173 58 141 7.81e-30 112
Msa0475030 MtrunA17_Chr7g0270541 50.000 110 53 1 72 181 121 228 1.79e-28 117
Msa0475030 MtrunA17_Chr8g0377421 46.429 112 58 1 96 205 132 243 4.01e-27 109
Msa0475030 MtrunA17_Chr8g0377401 58.904 73 30 0 96 168 162 234 1.03e-22 95.9
Msa0475030 MtrunA17_Chr8g0366211 55.435 92 38 2 47 136 39 129 1.83e-18 80.9
Msa0475030 MtrunA17_Chr2g0286661 50.000 74 37 0 96 169 103 176 3.64e-18 86.3
Msa0475030 MtrunA17_Chr2g0317041 59.574 47 19 0 96 142 99 145 1.64e-14 70.5
Msa0475030 MtrunA17_Chr1g0175031 61.702 47 18 0 96 142 74 120 2.96e-14 69.3
Msa0475030 MtrunA17_Chr8g0377431 53.571 56 26 0 96 151 151 206 5.07e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475030 AT5G50570.1 39.303 402 174 17 1 375 1 359 2.61e-69 222
Msa0475030 AT5G50570.2 39.303 402 174 17 1 375 1 359 2.61e-69 222
Msa0475030 AT5G50670.1 39.303 402 174 17 1 375 1 359 2.61e-69 222
Msa0475030 AT5G50670.2 39.303 402 174 17 1 375 1 359 2.61e-69 222
Msa0475030 AT1G27370.6 52.778 108 51 0 64 171 144 251 2.92e-33 127
Msa0475030 AT1G27370.1 52.778 108 51 0 64 171 144 251 4.27e-33 127
Msa0475030 AT1G27370.5 52.778 108 51 0 64 171 144 251 4.27e-33 127
Msa0475030 AT1G27370.3 52.778 108 51 0 64 171 144 251 4.27e-33 127
Msa0475030 AT1G27370.2 52.778 108 51 0 64 171 144 251 4.27e-33 127
Msa0475030 AT1G27370.4 52.778 108 51 0 64 171 144 251 4.27e-33 127
Msa0475030 AT1G27370.7 52.778 108 51 0 64 171 144 251 4.27e-33 127
Msa0475030 AT2G47070.1 58.252 103 41 1 96 196 106 208 3.98e-32 128
Msa0475030 AT2G42200.1 62.963 81 30 0 96 176 74 154 7.31e-32 124
Msa0475030 AT3G60030.1 55.046 109 46 1 93 198 124 232 7.66e-32 127
Msa0475030 AT1G76580.2 67.901 81 26 0 96 176 114 194 9.24e-32 127
Msa0475030 AT1G76580.3 67.901 81 26 0 96 176 114 194 9.99e-32 127
Msa0475030 AT5G43270.3 63.750 80 29 0 93 172 166 245 1.42e-31 124
Msa0475030 AT5G43270.1 63.750 80 29 0 93 172 166 245 1.42e-31 124
Msa0475030 AT5G43270.2 63.750 80 29 0 93 172 166 245 1.42e-31 124
Msa0475030 AT1G76580.1 67.901 81 26 0 96 176 114 194 1.76e-31 126
Msa0475030 AT1G27360.2 52.830 106 48 1 66 171 147 250 1.85e-31 123
Msa0475030 AT1G27360.1 52.830 106 48 1 66 171 147 250 1.85e-31 123
Msa0475030 AT1G27360.3 52.830 106 48 1 66 171 147 250 1.85e-31 123
Msa0475030 AT1G27360.4 52.830 106 48 1 66 171 147 250 1.85e-31 123
Msa0475030 AT1G02065.1 48.819 127 60 2 43 169 140 261 6.11e-31 120
Msa0475030 AT3G57920.1 56.842 95 41 0 78 172 41 135 8.40e-31 120
Msa0475030 AT2G33810.1 64.865 74 26 0 96 169 54 127 1.58e-30 114
Msa0475030 AT1G69170.1 37.500 224 124 3 81 303 109 317 2.62e-30 120
Msa0475030 AT1G53160.3 62.821 78 29 0 96 173 54 131 2.67e-29 112
Msa0475030 AT1G53160.2 62.821 78 29 0 96 173 54 131 4.62e-29 111
Msa0475030 AT1G53160.1 62.821 78 29 0 96 173 54 131 4.62e-29 111
Msa0475030 AT1G20980.1 64.634 82 28 1 96 176 120 201 5.99e-29 119
Msa0475030 AT3G15270.1 60.811 74 29 0 96 169 63 136 1.99e-27 107
Msa0475030 AT2G47070.2 55.696 79 33 1 120 196 1 79 4.25e-19 89.7
Msa0475030 AT1G02065.2 42.574 101 53 2 43 143 140 235 7.26e-18 82.8
Msa0475030 AT5G18830.2 48.684 76 38 1 96 170 138 213 8.23e-17 82.8
Msa0475030 AT5G18830.1 48.684 76 38 1 96 170 138 213 9.58e-17 82.4
Msa0475030 AT5G18830.3 48.684 76 38 1 96 170 138 213 9.67e-17 82.4

Find 136 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAACCTTACCTTGGTAAT+TGG 0.175692 3_3:-78105953 None:intergenic
AGAAGTAGGTGTTGCAATTT+TGG 0.183559 3_3:-78104564 None:intergenic
AAAGCACCTTCTTGGGATTT+GGG 0.187536 3_3:+78104371 Msa0475030:CDS
GTTGGCAGAACCTTTGTTTA+AGG 0.193299 3_3:-78104748 None:intergenic
TAGGCAACAAAATTCATAAA+TGG 0.196378 3_3:+78108024 Msa0475030:three_prime_UTR
GAAAGCACCTTCTTGGGATT+TGG 0.238938 3_3:+78104370 Msa0475030:CDS
CATACATTACTTTCTCAATA+AGG 0.253963 3_3:-78107964 None:intergenic
GGAAGAACAATCCCTATATT+TGG 0.255504 3_3:+78103689 Msa0475030:five_prime_UTR
ACGAAACCACACCTCTTCTT+AGG 0.280555 3_3:+78107538 Msa0475030:CDS
AAATTTCTATTCCCATTGAT+AGG 0.308664 3_3:-78107859 None:intergenic
CCACATGTACTTGTTGGTTT+TGG 0.311200 3_3:-78107413 None:intergenic
GGAATTTGAAAGCACCTTCT+TGG 0.318651 3_3:+78104363 Msa0475030:CDS
TCTTCCATTGTTTCTATGTT+GGG 0.318840 3_3:-78104416 None:intergenic
CTTCAAAGTCCTTCTTTGAT+TGG 0.322535 3_3:-78104273 None:intergenic
CCACAATTTCATTTCATGTA+TGG 0.336973 3_3:+78103823 Msa0475030:five_prime_UTR
ATGGAAGAATCAAACAGATT+TGG 0.341310 3_3:+78104431 Msa0475030:CDS
ATTGCAACACCTACTTCTTC+AGG 0.342235 3_3:+78104569 Msa0475030:CDS
TGATCACTCTCACTCCCATT+TGG 0.346060 3_3:-78107771 None:intergenic
CATGTATAGGTTTCATTCGC+TGG 0.346570 3_3:+78105819 Msa0475030:intron
AATGTCCCGTATGCAGCCTT+TGG 0.355884 3_3:+78107695 Msa0475030:CDS
TTCTTCCATTGTTTCTATGT+TGG 0.356796 3_3:-78104417 None:intergenic
GATCAGAGGAACAGTGTTAA+GGG 0.376528 3_3:-78103779 None:intergenic
TCTCAAGCTACTATACATAC+TGG 0.392962 3_3:+78103657 Msa0475030:five_prime_UTR
GATCACTCTCACTCCCATTT+GGG 0.397635 3_3:-78107770 None:intergenic
CTCAACTATTTCCCTATCAA+TGG 0.401247 3_3:+78107847 Msa0475030:CDS
GAATTTGAAAGCACCTTCTT+GGG 0.406706 3_3:+78104364 Msa0475030:CDS
ATTTGAAGCTTGGTCAGGTT+GGG 0.406990 3_3:+78104486 Msa0475030:CDS
AGATCAGAGGAACAGTGTTA+AGG 0.407131 3_3:-78103780 None:intergenic
AAGTTGCTTCCCTTCTCCAT+AGG 0.412844 3_3:-78107475 None:intergenic
AATTGTGGATCACAGGATAA+TGG 0.412890 3_3:-78103808 None:intergenic
ATGTCCCGTATGCAGCCTTT+GGG 0.413710 3_3:+78107696 Msa0475030:CDS
ACACCTGGACTACTTAGTTA+TGG 0.414514 3_3:+78107937 Msa0475030:three_prime_UTR
ACTCCAGAGGTTACAATTTG+TGG 0.417163 3_3:+78104725 Msa0475030:CDS
GTAATTGTAGAGATTATCAT+AGG 0.418535 3_3:+78104672 Msa0475030:CDS
CTACCAGCAGGTCGCGTGAT+AGG 0.419897 3_3:-78105922 None:intergenic
TATAGTAGCTTGAGAGAGAA+AGG 0.422160 3_3:-78103649 None:intergenic
CAGACGCACACATCTGATAA+TGG 0.424137 3_3:+78107642 Msa0475030:CDS
TATACATACTGGGAAGGAAT+AGG 0.429454 3_3:+78103668 Msa0475030:five_prime_UTR
CAATTTGTGGCCTTAAACAA+AGG 0.433957 3_3:+78104738 Msa0475030:CDS
CAGTTTCTTGTCTTGTGGAT+GGG 0.435642 3_3:+78104633 Msa0475030:CDS
TTGGAGTTTATAAAATGAAA+GGG 0.436768 3_3:+78104450 Msa0475030:CDS
TATCAACCACATGTACTTGT+TGG 0.442335 3_3:-78107419 None:intergenic
GAAGGAGTGTTGGTCCCAAA+TGG 0.443655 3_3:+78107756 Msa0475030:CDS
AATTGTAACCTCTGGAGTCT+TGG 0.443787 3_3:-78104720 None:intergenic
AGTTGCTTCCCTTCTCCATA+GGG 0.445636 3_3:-78107474 None:intergenic
AGGCAACAAAATTCATAAAT+GGG 0.447439 3_3:+78108025 Msa0475030:three_prime_UTR
AACTTGAAAAGGGTAGCAAC+TGG 0.449000 3_3:-78107314 None:intergenic
GGAGGGTACACTGTATTGTT+AGG 0.455857 3_3:-78103873 None:intergenic
AGATTATCATAGGCGTCATA+AGG 0.456365 3_3:+78104682 Msa0475030:CDS
GCAGGTCGCGTGATAGGTTC+AGG 0.457130 3_3:-78105916 None:intergenic
ACAGTTTCTTGTCTTGTGGA+TGG 0.459317 3_3:+78104632 Msa0475030:CDS
AATTTCTATTCCCATTGATA+GGG 0.460765 3_3:-78107858 None:intergenic
TGTTGATTTGAAGCTTGGTC+AGG 0.463472 3_3:+78104481 Msa0475030:CDS
AAGCACCTTCTTGGGATTTG+GGG 0.465651 3_3:+78104372 Msa0475030:CDS
CATGGCAGTAGAACTTGAAA+AGG 0.466360 3_3:-78107325 None:intergenic
AGCTGTAGGAAACGTTTAGA+TGG 0.466807 3_3:+78105865 Msa0475030:CDS
TTTCTTCCTGTGAAAGTGGT+AGG 0.467735 3_3:+78107376 Msa0475030:CDS
AGGCCACAAATTGTAACCTC+TGG 0.469390 3_3:-78104728 None:intergenic
TTTGGAGTTTATAAAATGAA+AGG 0.469867 3_3:+78104449 Msa0475030:CDS
TGGGACCAACACTCCTTCCA+TGG 0.470666 3_3:-78107751 None:intergenic
CGACCACTCGTTGCCTGACA+TGG 0.479126 3_3:-78103906 None:intergenic
GGTTCTGCCAACAGTGTAGC+AGG 0.480510 3_3:+78104759 Msa0475030:CDS
TAACAATAGCTTTGAGTCCA+TGG 0.485578 3_3:+78107734 Msa0475030:CDS
CTCATTTCTTCCTGTGAAAG+TGG 0.486411 3_3:+78107372 Msa0475030:CDS
TTGTTCCTCGTTGTATAACA+TGG 0.491290 3_3:+78107794 Msa0475030:CDS
CGCGTGATAGGTTCAGGCTG+TGG 0.502946 3_3:-78105910 None:intergenic
CATAATATAATAACAACAAA+AGG 0.505411 3_3:-78104336 None:intergenic
TGATAATGGTTTGAATCAAA+TGG 0.506912 3_3:+78107656 Msa0475030:CDS
TTGTATAACATGGGTTCTGA+TGG 0.507293 3_3:+78107804 Msa0475030:CDS
GAAATGAAATTGTGGATCAC+AGG 0.507703 3_3:-78103815 None:intergenic
TCAACTATTTCCCTATCAAT+GGG 0.507836 3_3:+78107848 Msa0475030:CDS
TGAGTCCATGGAAGGAGTGT+TGG 0.509096 3_3:+78107746 Msa0475030:CDS
GAACCTATCACGCGACCTGC+TGG 0.513292 3_3:+78105919 Msa0475030:CDS
TTGCTACTTGTCCTAAGAAG+AGG 0.514720 3_3:-78107549 None:intergenic
ATTGACAGTTTCTTGTCTTG+TGG 0.515582 3_3:+78104628 Msa0475030:CDS
CTTGAGAGAGAAAGGAAAGG+AGG 0.516293 3_3:-78103641 None:intergenic
TCAGTCCCAAAGGCTGCATA+CGG 0.523893 3_3:-78107701 None:intergenic
TCATATACTACTTACTATCA+TGG 0.530475 3_3:-78103602 None:intergenic
TCCCTCACAGAATCCATGTC+AGG 0.533090 3_3:+78103893 Msa0475030:five_prime_UTR
CATTCAAAATGAACTAACAA+AGG 0.535590 3_3:-78107906 None:intergenic
ATTCAAAATGAACTAACAAA+GGG 0.537263 3_3:-78107905 None:intergenic
TTTAGGTAACCAATCAAAGA+AGG 0.537929 3_3:+78104264 Msa0475030:intron
TTGCTTCCCTTCTCCATAGG+GGG 0.540375 3_3:-78107472 None:intergenic
TTGAATGAATTCTTTACACC+TGG 0.541734 3_3:+78107922 Msa0475030:three_prime_UTR
AGCACCTTCTTGGGATTTGG+GGG 0.546781 3_3:+78104373 Msa0475030:CDS
TGTTCCTCGTTGTATAACAT+GGG 0.547164 3_3:+78107795 Msa0475030:CDS
GTGAAGCCTACCACTTTCAC+AGG 0.547444 3_3:-78107382 None:intergenic
CTCAAGCTACTATACATACT+GGG 0.547538 3_3:+78103658 Msa0475030:five_prime_UTR
CCATACATGAAATGAAATTG+TGG 0.548130 3_3:-78103823 None:intergenic
AAACCATAACTAAGTAGTCC+AGG 0.551429 3_3:-78107940 None:intergenic
TGGAGTTTATAAAATGAAAG+GGG 0.553424 3_3:+78104451 Msa0475030:CDS
AAGGAGTGTTGGTCCCAAAT+GGG 0.554973 3_3:+78107757 Msa0475030:CDS
CTGCCATGGTGAATTCAGCT+TGG 0.557661 3_3:+78107340 Msa0475030:CDS
GGAACAGTGTTAAGGGGACC+TGG 0.567368 3_3:-78103772 None:intergenic
AGGCAACGAGTGGTCGGTGA+AGG 0.572022 3_3:+78103913 Msa0475030:five_prime_UTR
TTAGAAGATCCTGAAGAAGT+AGG 0.578080 3_3:-78104578 None:intergenic
ATTACCCAACATAGAAACAA+TGG 0.578453 3_3:+78104412 Msa0475030:CDS
TAGCTTGAGAGAGAAAGGAA+AGG 0.582045 3_3:-78103644 None:intergenic
GTTGTTATTATATTATGGAG+TGG 0.582799 3_3:+78104342 Msa0475030:exon
GTGAATTCAGCTTGGAGTAG+CGG 0.589283 3_3:+78107348 Msa0475030:CDS
GCATCATTAGACAAAGGAAG+TGG 0.590112 3_3:-78104530 None:intergenic
GATTTGAAGCTTGGTCAGGT+TGG 0.592453 3_3:+78104485 Msa0475030:CDS
ACTTGAAAAGGGTAGCAACT+GGG 0.597817 3_3:-78107313 None:intergenic
CATTGATAGGGAAATAGTTG+AGG 0.598793 3_3:-78107846 None:intergenic
ATATATACCTGCTACACTGT+TGG 0.601239 3_3:-78104766 None:intergenic
TTACAAGAAGTATATCATCC+AGG 0.601288 3_3:+78103754 Msa0475030:five_prime_UTR
GACAGAAGAGAGAGAGCACA+AGG 0.601971 3_3:-78107612 None:intergenic
AATAGCTTTGAGTCCATGGA+AGG 0.603284 3_3:+78107738 Msa0475030:CDS
CATGTCAGGCAACGAGTGGT+CGG 0.603377 3_3:+78103907 Msa0475030:five_prime_UTR
ATGGCAGTAGAACTTGAAAA+GGG 0.604257 3_3:-78107324 None:intergenic
TGCATACGGGACATTGAATG+AGG 0.606553 3_3:-78107687 None:intergenic
CCATGCAGACTCAGTCCCAA+AGG 0.608403 3_3:-78107711 None:intergenic
CCTTTGGGACTGAGTCTGCA+TGG 0.612958 3_3:+78107711 Msa0475030:CDS
TACACTGTATTGTTAGGTGA+GGG 0.616650 3_3:-78103867 None:intergenic
CAGTCCCAAAGGCTGCATAC+GGG 0.620364 3_3:-78107700 None:intergenic
GCCTGACATGGATTCTGTGA+GGG 0.620984 3_3:-78103894 None:intergenic
AGCTACTATACATACTGGGA+AGG 0.621960 3_3:+78103662 Msa0475030:five_prime_UTR
ATCAGAGGAACAGTGTTAAG+GGG 0.622819 3_3:-78103778 None:intergenic
GACATGGATTCTGTGAGGGA+GGG 0.625616 3_3:-78103890 None:intergenic
GTACACTGTATTGTTAGGTG+AGG 0.626831 3_3:-78103868 None:intergenic
GTTGCTTCCCTTCTCCATAG+GGG 0.627059 3_3:-78107473 None:intergenic
TAGCAGACAATAGCAGCAGA+AGG 0.627951 3_3:-78103949 None:intergenic
ATGGGTTCTGATGGATCACA+AGG 0.638864 3_3:+78107813 Msa0475030:CDS
CCAAAACCAACAAGTACATG+TGG 0.642955 3_3:+78107413 Msa0475030:CDS
GCACCTTCTTGGGATTTGGG+GGG 0.648392 3_3:+78104374 Msa0475030:CDS
ACTTGTCCTAAGAAGAGGTG+TGG 0.652942 3_3:-78107544 None:intergenic
GATAATGGATAAGAGATCAG+AGG 0.653497 3_3:-78103793 None:intergenic
TGACATGGATTCTGTGAGGG+AGG 0.656056 3_3:-78103891 None:intergenic
AATCCATGTCAGGCAACGAG+TGG 0.657568 3_3:+78103903 Msa0475030:five_prime_UTR
ACAACAGCATCATTAGACAA+AGG 0.660295 3_3:-78104536 None:intergenic
AATTTATGATCTCTATCATG+AGG 0.663147 3_3:+78107988 Msa0475030:three_prime_UTR
AGGAAGTGGTGATTGATCAG+TGG 0.671389 3_3:-78104516 None:intergenic
ACTTCATTCCAAGACTCCAG+AGG 0.684162 3_3:+78104712 Msa0475030:CDS
TGCCTGACATGGATTCTGTG+AGG 0.692886 3_3:-78103895 None:intergenic
ACTCCAAGCTGAATTCACCA+TGG 0.715980 3_3:-78107343 None:intergenic
AGAACCCATGTTATACAACG+AGG 0.772576 3_3:-78107799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAATAAATTATATTTT+TGG + chr3_3:78103722-78103741 Msa0475030:five_prime_UTR 0.0%
!! AAAATAAATAAATAAATAAA+TGG - chr3_3:78104042-78104061 None:intergenic 0.0%
!! ATAATTTCAAATTTAAACAT+AGG - chr3_3:78104812-78104831 None:intergenic 10.0%
!!! ATATATCATTATTTTGTTAA+TGG - chr3_3:78107215-78107234 None:intergenic 10.0%
!!! TTTTATTTTTGCCAAATATA+GGG - chr3_3:78103703-78103722 None:intergenic 15.0%
!!! ATTTTATTTTTGCCAAATAT+AGG - chr3_3:78103704-78103723 None:intergenic 15.0%
!! CATAATATAATAACAACAAA+AGG - chr3_3:78104339-78104358 None:intergenic 15.0%
!!! CTTTTGTTGTTATTATATTA+TGG + chr3_3:78104337-78104356 Msa0475030:exon 15.0%
!! ATATTTACTTATAAATGTGA+CGG - chr3_3:78105005-78105024 None:intergenic 15.0%
!! GATAGAATAAAATTATAAAG+CGG - chr3_3:78105424-78105443 None:intergenic 15.0%
!!! AGTTTTTCTCAAATTAATAT+CGG + chr3_3:78105564-78105583 Msa0475030:intron 15.0%
!! GAAAACATAGTTTAATTATA+TGG + chr3_3:78105650-78105669 Msa0475030:intron 15.0%
!!! AATTTTCTCTTAAAAAACAA+TGG - chr3_3:78106364-78106383 None:intergenic 15.0%
!!! CTGTCATAATTTTAAAATTT+GGG - chr3_3:78107081-78107100 None:intergenic 15.0%
!!! TCTGTCATAATTTTAAAATT+TGG - chr3_3:78107082-78107101 None:intergenic 15.0%
!! TTGTACTTTAAATAAACTAA+TGG - chr3_3:78107250-78107269 None:intergenic 15.0%
!!! ATTTCATGTATGGTTTTTAA+AGG + chr3_3:78103833-78103852 Msa0475030:five_prime_UTR 20.0%
!! AACAATTGTGAATGATATTT+AGG + chr3_3:78104247-78104266 Msa0475030:intron 20.0%
!!! TTTGGAGTTTATAAAATGAA+AGG + chr3_3:78104449-78104468 Msa0475030:CDS 20.0%
!! TTGGAGTTTATAAAATGAAA+GGG + chr3_3:78104450-78104469 Msa0475030:CDS 20.0%
!! TATTATATTCTATAGCTTAG+GGG - chr3_3:78104849-78104868 None:intergenic 20.0%
!! CTATTATATTCTATAGCTTA+GGG - chr3_3:78104850-78104869 None:intergenic 20.0%
!! TCTATTATATTCTATAGCTT+AGG - chr3_3:78104851-78104870 None:intergenic 20.0%
!!! AATGTTAGAGATTAATTTGA+CGG - chr3_3:78104928-78104947 None:intergenic 20.0%
!! ACATTTAATGAATCTAAAAG+AGG + chr3_3:78105080-78105099 Msa0475030:intron 20.0%
!! TTGTTTATAAATATGACTAG+AGG + chr3_3:78105108-78105127 Msa0475030:intron 20.0%
!! TGTTTATAAATATGACTAGA+GGG + chr3_3:78105109-78105128 Msa0475030:intron 20.0%
!! TTTGGTTAAAGAATAAAGAA+AGG - chr3_3:78105367-78105386 None:intergenic 20.0%
!! TACCAACAATATTATACTAA+TGG - chr3_3:78106300-78106319 None:intergenic 20.0%
!! ATTAGTATAATATTGTTGGT+AGG + chr3_3:78106299-78106318 Msa0475030:intron 20.0%
!! TTAGTATAATATTGTTGGTA+GGG + chr3_3:78106300-78106319 Msa0475030:intron 20.0%
!! CGTGAAAAAATATGTTAATA+TGG + chr3_3:78107141-78107160 Msa0475030:intron 20.0%
!!! TATTTTGTTAATGGCTAATA+AGG - chr3_3:78107206-78107225 None:intergenic 20.0%
!! ATTCAAAATGAACTAACAAA+GGG - chr3_3:78107908-78107927 None:intergenic 20.0%
! TCATATACTACTTACTATCA+TGG - chr3_3:78103605-78103624 None:intergenic 25.0%
! TTGCTTCATTGTATTATGTT+AGG + chr3_3:78104081-78104100 Msa0475030:intron 25.0%
!!! ACTTGACATTTTTTGTTACT+TGG + chr3_3:78104144-78104163 Msa0475030:intron 25.0%
! GTTCAATATATTTATGCTAC+TGG + chr3_3:78104180-78104199 Msa0475030:intron 25.0%
!! GTTGTTATTATATTATGGAG+TGG + chr3_3:78104342-78104361 Msa0475030:exon 25.0%
! TGGAGTTTATAAAATGAAAG+GGG + chr3_3:78104451-78104470 Msa0475030:CDS 25.0%
! GTAATTGTAGAGATTATCAT+AGG + chr3_3:78104672-78104691 Msa0475030:CDS 25.0%
! ACATAAGTTATGAACTAACT+TGG + chr3_3:78105149-78105168 Msa0475030:intron 25.0%
!!! TTAGTTTGTAGATGCATTTA+TGG + chr3_3:78105245-78105264 Msa0475030:intron 25.0%
!!! ACGTTTTCAATCTAAAATGT+CGG - chr3_3:78105464-78105483 None:intergenic 25.0%
! AAATTAAGATTCAGGACTTA+AGG - chr3_3:78105795-78105814 None:intergenic 25.0%
! TCTTAATTTCCTTCATGTAT+AGG + chr3_3:78105806-78105825 Msa0475030:intron 25.0%
! CCTAATAATTTCAGCATTAT+CGG + chr3_3:78106066-78106085 Msa0475030:intron 25.0%
! ATATATTTCCGTATCTTTGT+GGG - chr3_3:78106157-78106176 None:intergenic 25.0%
! TATATATTTCCGTATCTTTG+TGG - chr3_3:78106158-78106177 None:intergenic 25.0%
! TATACTTATATCAGATGAGT+AGG + chr3_3:78106182-78106201 Msa0475030:intron 25.0%
! TGATTAATTAATCGCATGAA+AGG - chr3_3:78106389-78106408 None:intergenic 25.0%
! TTGAAGCTTCTATAAAGTTA+CGG - chr3_3:78106440-78106459 None:intergenic 25.0%
! TTTATAGAAGCTTCAAATTC+AGG + chr3_3:78106444-78106463 Msa0475030:intron 25.0%
! TTGATGTATGTGGTTAAATA+GGG + chr3_3:78106577-78106596 Msa0475030:intron 25.0%
! ATAGGGAGTAATTAACTAAT+CGG + chr3_3:78106594-78106613 Msa0475030:intron 25.0%
!!! CAATGAAAGCATTAAATGTT+GGG - chr3_3:78106645-78106664 None:intergenic 25.0%
! CAACATTTAATGCTTTCATT+GGG + chr3_3:78106644-78106663 Msa0475030:intron 25.0%
! ATACTACATTTATTCTACGT+GGG - chr3_3:78106834-78106853 None:intergenic 25.0%
!! AAATAACTGATAGCGTAAAT+TGG + chr3_3:78106962-78106981 Msa0475030:intron 25.0%
! TTCACGAGTAATAAAATAGT+GGG - chr3_3:78107127-78107146 None:intergenic 25.0%
! TTTCACGAGTAATAAAATAG+TGG - chr3_3:78107128-78107147 None:intergenic 25.0%
!! GATAAACAAGATATTTTTCC+TGG + chr3_3:78107438-78107457 Msa0475030:CDS 25.0%
!!! TGATAATGGTTTGAATCAAA+TGG + chr3_3:78107656-78107675 Msa0475030:CDS 25.0%
! AATTTCTATTCCCATTGATA+GGG - chr3_3:78107861-78107880 None:intergenic 25.0%
! AAATTTCTATTCCCATTGAT+AGG - chr3_3:78107862-78107881 None:intergenic 25.0%
! CATTCAAAATGAACTAACAA+AGG - chr3_3:78107909-78107928 None:intergenic 25.0%
! CATACATTACTTTCTCAATA+AGG - chr3_3:78107967-78107986 None:intergenic 25.0%
! AATTTATGATCTCTATCATG+AGG + chr3_3:78107988-78108007 Msa0475030:three_prime_UTR 25.0%
! TAGGCAACAAAATTCATAAA+TGG + chr3_3:78108024-78108043 Msa0475030:three_prime_UTR 25.0%
! AGGCAACAAAATTCATAAAT+GGG + chr3_3:78108025-78108044 Msa0475030:three_prime_UTR 25.0%
! TTACAAGAAGTATATCATCC+AGG + chr3_3:78103754-78103773 Msa0475030:five_prime_UTR 30.0%
CCATACATGAAATGAAATTG+TGG - chr3_3:78103826-78103845 None:intergenic 30.0%
CCACAATTTCATTTCATGTA+TGG + chr3_3:78103823-78103842 Msa0475030:five_prime_UTR 30.0%
TGTTAGGTAACCTTAATTTC+AGG + chr3_3:78104097-78104116 Msa0475030:intron 30.0%
TTTAGGTAACCAATCAAAGA+AGG + chr3_3:78104264-78104283 Msa0475030:intron 30.0%
ATTACCCAACATAGAAACAA+TGG + chr3_3:78104412-78104431 Msa0475030:CDS 30.0%
!! TCTTCCATTGTTTCTATGTT+GGG - chr3_3:78104419-78104438 None:intergenic 30.0%
!! TTCTTCCATTGTTTCTATGT+TGG - chr3_3:78104420-78104439 None:intergenic 30.0%
ATGGAAGAATCAAACAGATT+TGG + chr3_3:78104431-78104450 Msa0475030:CDS 30.0%
!!! TTTTCTGTTGATTTGAAGCT+TGG + chr3_3:78104476-78104495 Msa0475030:CDS 30.0%
TTTACTTATAAATGTGACGG+AGG - chr3_3:78105002-78105021 None:intergenic 30.0%
GAAAGGTAATTAAGATGCTA+AGG - chr3_3:78105350-78105369 None:intergenic 30.0%
! ATGTGTTGAGAGATTCTTTT+TGG - chr3_3:78105385-78105404 None:intergenic 30.0%
! TTTTAGATTGAAAACGTGTC+TGG + chr3_3:78105467-78105486 Msa0475030:intron 30.0%
GCATGCATATGAAAAACTTA+TGG - chr3_3:78105618-78105637 None:intergenic 30.0%
CATGAAGGAAATTAAGATTC+AGG - chr3_3:78105803-78105822 None:intergenic 30.0%
ATGAAAGAAAAAGAAGCTGT+AGG + chr3_3:78105851-78105870 Msa0475030:CDS 30.0%
!!! AGTTTTTTGTCCAATTACCA+AGG + chr3_3:78105943-78105962 Msa0475030:CDS 30.0%
ATCTAGGCATATATGCAAAT+GGG - chr3_3:78106034-78106053 None:intergenic 30.0%
CCGATAATGCTGAAATTATT+AGG - chr3_3:78106069-78106088 None:intergenic 30.0%
TATATTTCCGTATCTTTGTG+GGG - chr3_3:78106156-78106175 None:intergenic 30.0%
GGCCATTAGTATAATATTGT+TGG + chr3_3:78106295-78106314 Msa0475030:intron 30.0%
! TGAAGCAAACTCTTTTTGTT+TGG - chr3_3:78106338-78106357 None:intergenic 30.0%
CAAAATCTCGATGAAATATC+AGG - chr3_3:78106482-78106501 None:intergenic 30.0%
! CTGATATTTCATCGAGATTT+TGG + chr3_3:78106480-78106499 Msa0475030:intron 30.0%
CTTATAACTTACTGTCTGTT+TGG - chr3_3:78106522-78106541 None:intergenic 30.0%
!! ACCAAAAAAGTTGATGTATG+TGG + chr3_3:78106567-78106586 Msa0475030:intron 30.0%
!!! ACCACATACATCAACTTTTT+TGG - chr3_3:78106571-78106590 None:intergenic 30.0%
GTTGATGTATGTGGTTAAAT+AGG + chr3_3:78106576-78106595 Msa0475030:intron 30.0%
TAGGGAGTAATTAACTAATC+GGG + chr3_3:78106595-78106614 Msa0475030:intron 30.0%
!! CCAATGAAAGCATTAAATGT+TGG - chr3_3:78106646-78106665 None:intergenic 30.0%
CCAACATTTAATGCTTTCAT+TGG + chr3_3:78106643-78106662 Msa0475030:intron 30.0%
ACTCATCTTTAAGTAATCGA+TGG - chr3_3:78106714-78106733 None:intergenic 30.0%
CATACTACATTTATTCTACG+TGG - chr3_3:78106835-78106854 None:intergenic 30.0%
TTGTGTCTAACCTAATTTCT+AGG + chr3_3:78106922-78106941 Msa0475030:intron 30.0%
GATAACATGACCTAGAAATT+AGG - chr3_3:78106935-78106954 None:intergenic 30.0%
!!! TTTTACTGCGATACTTTTTC+AGG + chr3_3:78107288-78107307 Msa0475030:intron 30.0%
TCAACTATTTCCCTATCAAT+GGG + chr3_3:78107848-78107867 Msa0475030:CDS 30.0%
TTGAATGAATTCTTTACACC+TGG + chr3_3:78107922-78107941 Msa0475030:three_prime_UTR 30.0%
ATGAGGAGAAAAGAAAAACT+AGG + chr3_3:78108005-78108024 Msa0475030:three_prime_UTR 30.0%
TATAGTAGCTTGAGAGAGAA+AGG - chr3_3:78103652-78103671 None:intergenic 35.0%
TCTCAAGCTACTATACATAC+TGG + chr3_3:78103657-78103676 Msa0475030:five_prime_UTR 35.0%
CTCAAGCTACTATACATACT+GGG + chr3_3:78103658-78103677 Msa0475030:five_prime_UTR 35.0%
TATACATACTGGGAAGGAAT+AGG + chr3_3:78103668-78103687 Msa0475030:five_prime_UTR 35.0%
GGAAGAACAATCCCTATATT+TGG + chr3_3:78103689-78103708 Msa0475030:five_prime_UTR 35.0%
!! GATAATGGATAAGAGATCAG+AGG - chr3_3:78103796-78103815 None:intergenic 35.0%
AATTGTGGATCACAGGATAA+TGG - chr3_3:78103811-78103830 None:intergenic 35.0%
GAAATGAAATTGTGGATCAC+AGG - chr3_3:78103818-78103837 None:intergenic 35.0%
TACACTGTATTGTTAGGTGA+GGG - chr3_3:78103870-78103889 None:intergenic 35.0%
TAACAAAGTTCCAAAGACAC+TGG - chr3_3:78104125-78104144 None:intergenic 35.0%
CTTCAAAGTCCTTCTTTGAT+TGG - chr3_3:78104276-78104295 None:intergenic 35.0%
!! GAATTTGAAAGCACCTTCTT+GGG + chr3_3:78104364-78104383 Msa0475030:CDS 35.0%
ACAACAGCATCATTAGACAA+AGG - chr3_3:78104539-78104558 None:intergenic 35.0%
!! AGAAGTAGGTGTTGCAATTT+TGG - chr3_3:78104567-78104586 None:intergenic 35.0%
TTAGAAGATCCTGAAGAAGT+AGG - chr3_3:78104581-78104600 None:intergenic 35.0%
ATTGACAGTTTCTTGTCTTG+TGG + chr3_3:78104628-78104647 Msa0475030:CDS 35.0%
AGATTATCATAGGCGTCATA+AGG + chr3_3:78104682-78104701 Msa0475030:CDS 35.0%
! CAATTTGTGGCCTTAAACAA+AGG + chr3_3:78104738-78104757 Msa0475030:CDS 35.0%
ATATATACCTGCTACACTGT+TGG - chr3_3:78104769-78104788 None:intergenic 35.0%
! GACTGATTTCATATAGCATG+TGG - chr3_3:78104877-78104896 None:intergenic 35.0%
TTCCATTCCATTGTTCATGT+TGG + chr3_3:78105299-78105318 Msa0475030:intron 35.0%
TAAGAAGCCAACATGAACAA+TGG - chr3_3:78105309-78105328 None:intergenic 35.0%
!! TCTAAAATGTCGGTGTTGTA+TGG - chr3_3:78105454-78105473 None:intergenic 35.0%
TTCACATGTTAATTCGTGAC+TGG + chr3_3:78105589-78105608 Msa0475030:intron 35.0%
CGAATGAAACCTATACATGA+AGG - chr3_3:78105818-78105837 None:intergenic 35.0%
TTTGTCCAATTACCAAGGTA+AGG + chr3_3:78105948-78105967 Msa0475030:intron 35.0%
CATCTAGGCATATATGCAAA+TGG - chr3_3:78106035-78106054 None:intergenic 35.0%
TTGCATATATGCCTAGATGA+AGG + chr3_3:78106036-78106055 Msa0475030:intron 35.0%
GCATGCATCAATTCATATCT+AGG - chr3_3:78106120-78106139 None:intergenic 35.0%
TAAAGATCCCCACAAAGATA+CGG + chr3_3:78106146-78106165 Msa0475030:intron 35.0%
ATAGATGAGTGCGTTTGATT+TGG + chr3_3:78106235-78106254 Msa0475030:intron 35.0%
AAGCTTCTATAAAGTTACGG+TGG - chr3_3:78106437-78106456 None:intergenic 35.0%
GAGTAATTAACTAATCGGGT+TGG + chr3_3:78106599-78106618 Msa0475030:intron 35.0%
TTAATGCTTTCATTGGGAGT+TGG + chr3_3:78106650-78106669 Msa0475030:intron 35.0%
!! CCTATAAGTAGTCATTTTCG+TGG - chr3_3:78106676-78106695 None:intergenic 35.0%
CCACGAAAATGACTACTTAT+AGG + chr3_3:78106673-78106692 Msa0475030:intron 35.0%
GAAAATGACTACTTATAGGC+TGG + chr3_3:78106677-78106696 Msa0475030:intron 35.0%
ACTACTTATAGGCTGGATTA+AGG + chr3_3:78106684-78106703 Msa0475030:intron 35.0%
AAATGTCTCGACTATTAGGT+AGG - chr3_3:78106874-78106893 None:intergenic 35.0%
GAGAAAATGTCTCGACTATT+AGG - chr3_3:78106878-78106897 None:intergenic 35.0%
TCTAGGTCATGTTATCCTTA+AGG + chr3_3:78106939-78106958 Msa0475030:intron 35.0%
! CGCTATCAGTTATTTCCTTA+AGG - chr3_3:78106957-78106976 None:intergenic 35.0%
! ACCTTACGAGTCAATTTTGT+AGG + chr3_3:78107032-78107051 Msa0475030:intron 35.0%
!! TCCTACAAAATTGACTCGTA+AGG - chr3_3:78107036-78107055 None:intergenic 35.0%
GGCTAATAAGGAACATGATT+AGG - chr3_3:78107194-78107213 None:intergenic 35.0%
ATGGCAGTAGAACTTGAAAA+GGG - chr3_3:78107327-78107346 None:intergenic 35.0%
TATCAACCACATGTACTTGT+TGG - chr3_3:78107422-78107441 None:intergenic 35.0%
!! TAACAATAGCTTTGAGTCCA+TGG + chr3_3:78107734-78107753 Msa0475030:CDS 35.0%
TTGTTCCTCGTTGTATAACA+TGG + chr3_3:78107794-78107813 Msa0475030:CDS 35.0%
TGTTCCTCGTTGTATAACAT+GGG + chr3_3:78107795-78107814 Msa0475030:CDS 35.0%
! TTGTATAACATGGGTTCTGA+TGG + chr3_3:78107804-78107823 Msa0475030:CDS 35.0%
CATTGATAGGGAAATAGTTG+AGG - chr3_3:78107849-78107868 None:intergenic 35.0%
CTCAACTATTTCCCTATCAA+TGG + chr3_3:78107847-78107866 Msa0475030:CDS 35.0%
AAACCATAACTAAGTAGTCC+AGG - chr3_3:78107943-78107962 None:intergenic 35.0%
TAGCTTGAGAGAGAAAGGAA+AGG - chr3_3:78103647-78103666 None:intergenic 40.0%
AGCTACTATACATACTGGGA+AGG + chr3_3:78103662-78103681 Msa0475030:five_prime_UTR 40.0%
ATCAGAGGAACAGTGTTAAG+GGG - chr3_3:78103781-78103800 None:intergenic 40.0%
GATCAGAGGAACAGTGTTAA+GGG - chr3_3:78103782-78103801 None:intergenic 40.0%
AGATCAGAGGAACAGTGTTA+AGG - chr3_3:78103783-78103802 None:intergenic 40.0%
GTACACTGTATTGTTAGGTG+AGG - chr3_3:78103871-78103890 None:intergenic 40.0%
GACACTGGAACCTGAAATTA+AGG - chr3_3:78104110-78104129 None:intergenic 40.0%
!! ATTTCAGGTTCCAGTGTCTT+TGG + chr3_3:78104112-78104131 Msa0475030:intron 40.0%
!! GGAATTTGAAAGCACCTTCT+TGG + chr3_3:78104363-78104382 Msa0475030:CDS 40.0%
! AAAGCACCTTCTTGGGATTT+GGG + chr3_3:78104371-78104390 Msa0475030:CDS 40.0%
!! TGTTGATTTGAAGCTTGGTC+AGG + chr3_3:78104481-78104500 Msa0475030:CDS 40.0%
! ATTTGAAGCTTGGTCAGGTT+GGG + chr3_3:78104486-78104505 Msa0475030:CDS 40.0%
GCATCATTAGACAAAGGAAG+TGG - chr3_3:78104533-78104552 None:intergenic 40.0%
ATTGCAACACCTACTTCTTC+AGG + chr3_3:78104569-78104588 Msa0475030:CDS 40.0%
ACAGTTTCTTGTCTTGTGGA+TGG + chr3_3:78104632-78104651 Msa0475030:CDS 40.0%
CAGTTTCTTGTCTTGTGGAT+GGG + chr3_3:78104633-78104652 Msa0475030:CDS 40.0%
!! AATTGTAACCTCTGGAGTCT+TGG - chr3_3:78104723-78104742 None:intergenic 40.0%
ACTCCAGAGGTTACAATTTG+TGG + chr3_3:78104725-78104744 Msa0475030:CDS 40.0%
! GTTGGCAGAACCTTTGTTTA+AGG - chr3_3:78104751-78104770 None:intergenic 40.0%
GCTAACATGAACGATGGATA+AGG - chr3_3:78105279-78105298 None:intergenic 40.0%
ATGGAAGCTAACATGAACGA+TGG - chr3_3:78105285-78105304 None:intergenic 40.0%
AGCCAACATGAACAATGGAA+TGG - chr3_3:78105304-78105323 None:intergenic 40.0%
CTCTCAACACATAAGAAACC+TGG + chr3_3:78105393-78105412 Msa0475030:intron 40.0%
TCAACACATAAGAAACCTGG+AGG + chr3_3:78105396-78105415 Msa0475030:intron 40.0%
AATTATAAAGCGGAACCTCC+AGG - chr3_3:78105414-78105433 None:intergenic 40.0%
CGAGTTTAAACACAAACGCA+AGG - chr3_3:78105710-78105729 None:intergenic 40.0%
GCGTTTGTGTTTAAACTCGA+TGG + chr3_3:78105711-78105730 Msa0475030:intron 40.0%
CATGTATAGGTTTCATTCGC+TGG + chr3_3:78105819-78105838 Msa0475030:intron 40.0%
AGCTGTAGGAAACGTTTAGA+TGG + chr3_3:78105865-78105884 Msa0475030:CDS 40.0%
! GCTGTGGTTTTCTTCTTCTT+CGG - chr3_3:78105897-78105916 None:intergenic 40.0%
TTGGACAAAAAACTACCAGC+AGG - chr3_3:78105937-78105956 None:intergenic 40.0%
TCCAATTACCAAGGTAAGGT+TGG + chr3_3:78105952-78105971 Msa0475030:intron 40.0%
! ACCAACCTTACCTTGGTAAT+TGG - chr3_3:78105956-78105975 None:intergenic 40.0%
CTAACTAACCAACCTTACCT+TGG - chr3_3:78105963-78105982 None:intergenic 40.0%
AACCACATTGTTATCCTCAG+TGG + chr3_3:78106002-78106021 Msa0475030:intron 40.0%
! TAGGTTGAACACCTTCATCT+AGG - chr3_3:78106050-78106069 None:intergenic 40.0%
GTATCTTTGTGGGGATCTTT+AGG - chr3_3:78106147-78106166 None:intergenic 40.0%
AAACGCACTCATCTATCCAA+GGG - chr3_3:78106231-78106250 None:intergenic 40.0%
TTAAGACGGGTAGCAATGTT+TGG + chr3_3:78106805-78106824 Msa0475030:intron 40.0%
! ATAGTCGAGACATTTTCTCG+TGG + chr3_3:78106879-78106898 Msa0475030:intron 40.0%
GTTAGACACAATACCGCAAA+AGG - chr3_3:78106913-78106932 None:intergenic 40.0%
ACTTGAAAAGGGTAGCAACT+GGG - chr3_3:78107316-78107335 None:intergenic 40.0%
AACTTGAAAAGGGTAGCAAC+TGG - chr3_3:78107317-78107336 None:intergenic 40.0%
CATGGCAGTAGAACTTGAAA+AGG - chr3_3:78107328-78107347 None:intergenic 40.0%
!!! CTTTTCAAGTTCTACTGCCA+TGG + chr3_3:78107326-78107345 Msa0475030:CDS 40.0%
CTCATTTCTTCCTGTGAAAG+TGG + chr3_3:78107372-78107391 Msa0475030:CDS 40.0%
TTTCTTCCTGTGAAAGTGGT+AGG + chr3_3:78107376-78107395 Msa0475030:CDS 40.0%
!!! GTACTTGTTGGTTTTGGTTG+TGG - chr3_3:78107410-78107429 None:intergenic 40.0%
!!! CCACATGTACTTGTTGGTTT+TGG - chr3_3:78107416-78107435 None:intergenic 40.0%
CCAAAACCAACAAGTACATG+TGG + chr3_3:78107413-78107432 Msa0475030:CDS 40.0%
! TTGCTACTTGTCCTAAGAAG+AGG - chr3_3:78107552-78107571 None:intergenic 40.0%
!! AATAGCTTTGAGTCCATGGA+AGG + chr3_3:78107738-78107757 Msa0475030:CDS 40.0%
AGAACCCATGTTATACAACG+AGG - chr3_3:78107802-78107821 None:intergenic 40.0%
ACACCTGGACTACTTAGTTA+TGG + chr3_3:78107937-78107956 Msa0475030:three_prime_UTR 40.0%
CTTGAGAGAGAAAGGAAAGG+AGG - chr3_3:78103644-78103663 None:intergenic 45.0%
! GGAGGGTACACTGTATTGTT+AGG - chr3_3:78103876-78103895 None:intergenic 45.0%
TAGCAGACAATAGCAGCAGA+AGG - chr3_3:78103952-78103971 None:intergenic 45.0%
!! GAAAGCACCTTCTTGGGATT+TGG + chr3_3:78104370-78104389 Msa0475030:CDS 45.0%
AAGCACCTTCTTGGGATTTG+GGG + chr3_3:78104372-78104391 Msa0475030:CDS 45.0%
! GATTTGAAGCTTGGTCAGGT+TGG + chr3_3:78104485-78104504 Msa0475030:CDS 45.0%
AGGAAGTGGTGATTGATCAG+TGG - chr3_3:78104519-78104538 None:intergenic 45.0%
ACTTCATTCCAAGACTCCAG+AGG + chr3_3:78104712-78104731 Msa0475030:CDS 45.0%
AGGCCACAAATTGTAACCTC+TGG - chr3_3:78104731-78104750 None:intergenic 45.0%
CTGGTATGTCGAACATGAGT+TGG + chr3_3:78105486-78105505 Msa0475030:intron 45.0%
!! TGTCGAACATGAGTTGGTGT+CGG + chr3_3:78105492-78105511 Msa0475030:intron 45.0%
GTCCACTGAGGATAACAATG+TGG - chr3_3:78106007-78106026 None:intergenic 45.0%
CATTGTTATCCTCAGTGGAC+TGG + chr3_3:78106007-78106026 Msa0475030:intron 45.0%
ATGTGATTACGCAATGCCCT+TGG + chr3_3:78106212-78106231 Msa0475030:intron 45.0%
CAAACGCACTCATCTATCCA+AGG - chr3_3:78106232-78106251 None:intergenic 45.0%
!! ATCGGGTTGGACTCTTTCAT+AGG + chr3_3:78106612-78106631 Msa0475030:intron 45.0%
TAATGGTAGCCCTTTCCTCT+CGG - chr3_3:78106744-78106763 None:intergenic 45.0%
AAAGGGCTACCATTAGAGCA+AGG + chr3_3:78106749-78106768 Msa0475030:intron 45.0%
ACTCTATCGCCTTGCTCTAA+TGG - chr3_3:78106761-78106780 None:intergenic 45.0%
TTAAGAGTTGACGTCCACAC+CGG - chr3_3:78106789-78106808 None:intergenic 45.0%
GTGGACGTCAACTCTTAAGA+CGG + chr3_3:78106791-78106810 Msa0475030:intron 45.0%
TGGACGTCAACTCTTAAGAC+GGG + chr3_3:78106792-78106811 Msa0475030:intron 45.0%
!! TATTAGGTAGGAGAGCGTCA+TGG - chr3_3:78106862-78106881 None:intergenic 45.0%
! CGTGGACTTTAGTCCTTTTG+CGG + chr3_3:78106897-78106916 Msa0475030:intron 45.0%
ACTCCAAGCTGAATTCACCA+TGG - chr3_3:78107346-78107365 None:intergenic 45.0%
GTGAATTCAGCTTGGAGTAG+CGG + chr3_3:78107348-78107367 Msa0475030:CDS 45.0%
AGTTGCTTCCCTTCTCCATA+GGG - chr3_3:78107477-78107496 None:intergenic 45.0%
AAGTTGCTTCCCTTCTCCAT+AGG - chr3_3:78107478-78107497 None:intergenic 45.0%
ACGAAACCACACCTCTTCTT+AGG + chr3_3:78107538-78107557 Msa0475030:CDS 45.0%
ACTTGTCCTAAGAAGAGGTG+TGG - chr3_3:78107547-78107566 None:intergenic 45.0%
CAGACGCACACATCTGATAA+TGG + chr3_3:78107642-78107661 Msa0475030:CDS 45.0%
TGCATACGGGACATTGAATG+AGG - chr3_3:78107690-78107709 None:intergenic 45.0%
!! AAGGAGTGTTGGTCCCAAAT+GGG + chr3_3:78107757-78107776 Msa0475030:CDS 45.0%
GATCACTCTCACTCCCATTT+GGG - chr3_3:78107773-78107792 None:intergenic 45.0%
TGATCACTCTCACTCCCATT+TGG - chr3_3:78107774-78107793 None:intergenic 45.0%
! ATGGGTTCTGATGGATCACA+AGG + chr3_3:78107813-78107832 Msa0475030:CDS 45.0%
GACATGGATTCTGTGAGGGA+GGG - chr3_3:78103893-78103912 None:intergenic 50.0%
TGACATGGATTCTGTGAGGG+AGG - chr3_3:78103894-78103913 None:intergenic 50.0%
TCCCTCACAGAATCCATGTC+AGG + chr3_3:78103893-78103912 Msa0475030:five_prime_UTR 50.0%
GCCTGACATGGATTCTGTGA+GGG - chr3_3:78103897-78103916 None:intergenic 50.0%
TGCCTGACATGGATTCTGTG+AGG - chr3_3:78103898-78103917 None:intergenic 50.0%
AATCCATGTCAGGCAACGAG+TGG + chr3_3:78103903-78103922 Msa0475030:five_prime_UTR 50.0%
AGCACCTTCTTGGGATTTGG+GGG + chr3_3:78104373-78104392 Msa0475030:CDS 50.0%
ATACCCCCCAAATCCCAAGA+AGG - chr3_3:78104380-78104399 None:intergenic 50.0%
! GGATTTGGGGGGTATAGAAG+AGG + chr3_3:78104385-78104404 Msa0475030:CDS 50.0%
CATGCGTGTCAATGTCGTGT+CGG - chr3_3:78105521-78105540 None:intergenic 50.0%
GAGCGCGACAGAGACATAAA+TGG - chr3_3:78106262-78106281 None:intergenic 50.0%
TTATGTCTCTGTCGCGCTCA+TGG + chr3_3:78106263-78106282 Msa0475030:intron 50.0%
TCGCGCTCATGGCAATCTAA+TGG + chr3_3:78106274-78106293 Msa0475030:intron 50.0%
CAAGGCGATAGAGTGAAAGC+CGG + chr3_3:78106767-78106786 Msa0475030:intron 50.0%
CTGCCATGGTGAATTCAGCT+TGG + chr3_3:78107340-78107359 Msa0475030:CDS 50.0%
GTGAAGCCTACCACTTTCAC+AGG - chr3_3:78107385-78107404 None:intergenic 50.0%
TAGGGGGTTTGAGTAGAACC+AGG - chr3_3:78107459-78107478 None:intergenic 50.0%
GGTTCTACTCAAACCCCCTA+TGG + chr3_3:78107459-78107478 Msa0475030:CDS 50.0%
ACTCAAACCCCCTATGGAGA+AGG + chr3_3:78107465-78107484 Msa0475030:CDS 50.0%
CTCAAACCCCCTATGGAGAA+GGG + chr3_3:78107466-78107485 Msa0475030:CDS 50.0%
TTGCTTCCCTTCTCCATAGG+GGG - chr3_3:78107475-78107494 None:intergenic 50.0%
GTTGCTTCCCTTCTCCATAG+GGG - chr3_3:78107476-78107495 None:intergenic 50.0%
! GACAGAAGAGAGAGAGCACA+AGG - chr3_3:78107615-78107634 None:intergenic 50.0%
AATGTCCCGTATGCAGCCTT+TGG + chr3_3:78107695-78107714 Msa0475030:CDS 50.0%
ATGTCCCGTATGCAGCCTTT+GGG + chr3_3:78107696-78107715 Msa0475030:CDS 50.0%
TCAGTCCCAAAGGCTGCATA+CGG - chr3_3:78107704-78107723 None:intergenic 50.0%
! TGAGTCCATGGAAGGAGTGT+TGG + chr3_3:78107746-78107765 Msa0475030:CDS 50.0%
!! GAAGGAGTGTTGGTCCCAAA+TGG + chr3_3:78107756-78107775 Msa0475030:CDS 50.0%
GGAACAGTGTTAAGGGGACC+TGG - chr3_3:78103775-78103794 None:intergenic 55.0%
CATGTCAGGCAACGAGTGGT+CGG + chr3_3:78103907-78103926 Msa0475030:five_prime_UTR 55.0%
GCACCTTCTTGGGATTTGGG+GGG + chr3_3:78104374-78104393 Msa0475030:CDS 55.0%
GGTTCTGCCAACAGTGTAGC+AGG + chr3_3:78104759-78104778 Msa0475030:CDS 55.0%
CAAATGGGTCCAGTCCACTG+AGG - chr3_3:78106019-78106038 None:intergenic 55.0%
AGATGAGTGAAACCGCCGAG+AGG + chr3_3:78106726-78106745 Msa0475030:intron 55.0%
AGTGAAACCGCCGAGAGGAA+AGG + chr3_3:78106731-78106750 Msa0475030:intron 55.0%
GTGAAACCGCCGAGAGGAAA+GGG + chr3_3:78106732-78106751 Msa0475030:intron 55.0%
CGATAGAGTGAAAGCCGGTG+TGG + chr3_3:78106772-78106791 Msa0475030:intron 55.0%
CAGTCCCAAAGGCTGCATAC+GGG - chr3_3:78107703-78107722 None:intergenic 55.0%
CCATGCAGACTCAGTCCCAA+AGG - chr3_3:78107714-78107733 None:intergenic 55.0%
!! CCTTTGGGACTGAGTCTGCA+TGG + chr3_3:78107711-78107730 Msa0475030:CDS 55.0%
TGGGACCAACACTCCTTCCA+TGG - chr3_3:78107754-78107773 None:intergenic 55.0%
CGACCACTCGTTGCCTGACA+TGG - chr3_3:78103909-78103928 None:intergenic 60.0%
AGGCAACGAGTGGTCGGTGA+AGG + chr3_3:78103913-78103932 Msa0475030:five_prime_UTR 60.0%
CGCGTGATAGGTTCAGGCTG+TGG - chr3_3:78105913-78105932 None:intergenic 60.0%
GCAGGTCGCGTGATAGGTTC+AGG - chr3_3:78105919-78105938 None:intergenic 60.0%
GAACCTATCACGCGACCTGC+TGG + chr3_3:78105919-78105938 Msa0475030:CDS 60.0%
CTACCAGCAGGTCGCGTGAT+AGG - chr3_3:78105925-78105944 None:intergenic 60.0%
TGGTAGCCCTTTCCTCTCGG+CGG - chr3_3:78106741-78106760 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 78103586 78108067 78103586 ID=Msa0475030;Name=Msa0475030
chr3_3 mRNA 78103586 78108067 78103586 ID=Msa0475030-mRNA-1;Parent=Msa0475030;Name=Msa0475030-mRNA-1;_AED=0.09;_eAED=0.09;_QI=477|1|1|1|0.66|0.5|4|192|375
chr3_3 exon 78103586 78103975 78103586 ID=Msa0475030-mRNA-1:exon:21001;Parent=Msa0475030-mRNA-1
chr3_3 exon 78104269 78104780 78104269 ID=Msa0475030-mRNA-1:exon:21002;Parent=Msa0475030-mRNA-1
chr3_3 exon 78105828 78105964 78105828 ID=Msa0475030-mRNA-1:exon:21003;Parent=Msa0475030-mRNA-1
chr3_3 exon 78107310 78108067 78107310 ID=Msa0475030-mRNA-1:exon:21004;Parent=Msa0475030-mRNA-1
chr3_3 five_prime_UTR 78103586 78103975 78103586 ID=Msa0475030-mRNA-1:five_prime_utr;Parent=Msa0475030-mRNA-1
chr3_3 five_prime_UTR 78104269 78104355 78104269 ID=Msa0475030-mRNA-1:five_prime_utr;Parent=Msa0475030-mRNA-1
chr3_3 CDS 78104356 78104780 78104356 ID=Msa0475030-mRNA-1:cds;Parent=Msa0475030-mRNA-1
chr3_3 CDS 78105828 78105964 78105828 ID=Msa0475030-mRNA-1:cds;Parent=Msa0475030-mRNA-1
chr3_3 CDS 78107310 78107875 78107310 ID=Msa0475030-mRNA-1:cds;Parent=Msa0475030-mRNA-1
chr3_3 three_prime_UTR 78107876 78108067 78107876 ID=Msa0475030-mRNA-1:three_prime_utr;Parent=Msa0475030-mRNA-1
Gene Sequence

>Msa0475030

ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTTGGGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAGGTTGGGAACTCTGCCACTGATCAATCACCACTTCCTTTGTCTAATGATGCTGTTGTTGTCTCCAAAATTGCAACACCTACTTCTTCAGGATCTTCTAAGAGAGCTAGAGCTATGAATAATGCAACATTGACAGTTTCTTGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAGACTCCAGAGGTTACAATTTGTGGCCTTAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGAAGAAGAAGAAAACCACAGCCTGAACCTATCACGCGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCCTTTTCAAGTTCTACTGCCATGGTGAATTCAGCTTGGAGTAGCGGACTCATTTCTTCCTGTGAAAGTGGTAGGCTTCACATCCACAACCAAAACCAACAAGTACATGTGGTTGATAAACAAGATATTTTTCCTGGTTCTACTCAAACCCCCTATGGAGAAGGGAAGCAACTTCAATTCTTACACAATGACAACAACAATCTCTCACTTCATAACGAAACCACACCTCTTCTTAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAACAACTTCAGTACACGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACATCTGATAATGGTTTGAATCAAATGGTGCAGCAGCCTCATTCAATGTCCCGTATGCAGCCTTTGGGACTGAGTCTGCATGGTAACAATAGCTTTGAGTCCATGGAAGGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCGTTGTATAACATGGGTTCTGATGGATCACAAGGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG
Protein sequence

>Msa0475030

MEWNLKAPSWDLGGIEEATLPNIETMEESNRFGVYKMKGEFSVDLKLGQVGNSATDQSPLPLSNDAVVVSKIATPTSSGSSKRARAMNNATLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTICGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTAMVNSAWSSGLISSCESGRLHIHNQNQQVHVVDKQDIFPGSTQTPYGEGKQLQFLHNDNNNLSLHNETTPLLRTSSKMFCDSLTTSVHESPCALSLLSSSQTHTSDNGLNQMVQQPHSMSRMQPLGLSLHGNNSFESMEGVLVPNGSESDHCSSLYNMGSDGSQGNDAPQLFPYQWE*