Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379910 | XP_024633753.1 | 97.129 | 209 | 4 | 1 | 13 | 221 | 341 | 547 | 8.12e-138 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379910 | sp|Q8L7S0|ULP2B_ARATH | 50.450 | 222 | 89 | 8 | 13 | 221 | 535 | 748 | 1.03e-49 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379910 | G7J545 | 97.129 | 209 | 4 | 1 | 13 | 221 | 532 | 738 | 1.39e-136 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379870 | Msa0379910 | 0.829734 | 4.361313e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379910 | MtrunA17_Chr3g0132991 | 97.129 | 209 | 4 | 1 | 13 | 221 | 535 | 741 | 2.74e-140 | 419 |
| Msa0379910 | MtrunA17_Chr5g0427421 | 53.589 | 209 | 84 | 3 | 13 | 221 | 35 | 230 | 2.75e-61 | 199 |
| Msa0379910 | MtrunA17_Chr2g0279601 | 59.804 | 102 | 38 | 2 | 15 | 116 | 540 | 638 | 4.39e-31 | 121 |
| Msa0379910 | MtrunA17_Chr5g0427691 | 58.442 | 77 | 30 | 1 | 13 | 89 | 15 | 89 | 1.23e-25 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379910 | AT1G09730.1 | 50.450 | 222 | 89 | 8 | 13 | 221 | 567 | 780 | 9.95e-51 | 178 |
| Msa0379910 | AT1G09730.2 | 50.450 | 222 | 89 | 8 | 13 | 221 | 535 | 748 | 1.05e-50 | 178 |
| Msa0379910 | AT4G33620.1 | 49.515 | 103 | 48 | 2 | 15 | 117 | 446 | 544 | 1.51e-23 | 100 |
Find 54 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAACTACTTACAAAAT+TGG | 0.231631 | 3_1:-81355123 | None:intergenic |
| GAAAACTTGGTTACTTTGAA+TGG | 0.356668 | 3_1:-81355101 | None:intergenic |
| TTGAGCATCTTGAGTTCAAC+AGG | 0.358785 | 3_1:+81355833 | Msa0379910:CDS |
| ACTTACAAAATTGGAAAACT+TGG | 0.397236 | 3_1:-81355114 | None:intergenic |
| TTGAATGGATTGAAAGTAAG+AGG | 0.400476 | 3_1:-81355086 | None:intergenic |
| GAAAATATTGAGAATGGAAC+TGG | 0.420627 | 3_1:+81355808 | Msa0379910:CDS |
| GCGTCAAAACCTTCCCATGC+TGG | 0.429353 | 3_1:+81355856 | Msa0379910:CDS |
| CACTACAGAAGCCTCTCATT+TGG | 0.455531 | 3_1:-81356187 | None:intergenic |
| ATAGAAATGACTCTATTGTC+TGG | 0.467501 | 3_1:+81355886 | Msa0379910:CDS |
| CGTCAAAACCTTCCCATGCT+GGG | 0.468834 | 3_1:+81355857 | Msa0379910:CDS |
| CGCTTGAGATAAGCTTCAGC+AGG | 0.471468 | 3_1:-81355691 | None:intergenic |
| CCCGGGTTGTTAAAAGATTG+AGG | 0.480157 | 3_1:-81355925 | None:intergenic |
| GTTGTTCCTGCTGTAGTACC+TGG | 0.482047 | 3_1:-81355973 | None:intergenic |
| TACATCGAAAATATTGAGAA+TGG | 0.485387 | 3_1:+81355802 | Msa0379910:CDS |
| ATGATCGCTGGTCAAAAGAT+TGG | 0.486843 | 3_1:-81356008 | None:intergenic |
| CTTCAGCAAGGAAGAGCTCT+AGG | 0.487355 | 3_1:-81355061 | None:intergenic |
| ACAGCTACTTGTGGGAAGAA+TGG | 0.490613 | 3_1:+81354414 | Msa0379910:CDS |
| TTCTATTCCCTCCCCAGCAT+GGG | 0.499439 | 3_1:-81355869 | None:intergenic |
| TGATATTGACAGCTACTTGT+GGG | 0.500465 | 3_1:+81354406 | Msa0379910:CDS |
| ATGGAAAGAAAGACATAAAG+AGG | 0.509158 | 3_1:+81354433 | Msa0379910:CDS |
| AGATCCTTGAGAACCATGCC+CGG | 0.517384 | 3_1:-81355943 | None:intergenic |
| TTTGAGCCAGGTACTACAGC+AGG | 0.521418 | 3_1:+81355967 | Msa0379910:CDS |
| CGAGTTCAGATATCAGCCTC+TGG | 0.528803 | 3_1:-81355723 | None:intergenic |
| CAACCCGGGCATGGTTCTCA+AGG | 0.530042 | 3_1:+81355939 | Msa0379910:CDS |
| CTAGGTAGTGCAGCAGAAAG+AGG | 0.536010 | 3_1:-81355043 | None:intergenic |
| TTTCTATTCCCTCCCCAGCA+TGG | 0.536676 | 3_1:-81355870 | None:intergenic |
| ATTCCCTCCCCAGCATGGGA+AGG | 0.539807 | 3_1:-81355865 | None:intergenic |
| GAAGCCTCTCATTTGGTACA+AGG | 0.540229 | 3_1:-81356180 | None:intergenic |
| GCTGTCAATATCAGATGAGA+AGG | 0.548465 | 3_1:-81354396 | None:intergenic |
| CGTGAAATCTCATCCTCTGA+TGG | 0.553794 | 3_1:+81355763 | Msa0379910:CDS |
| AGAAAGACATAAAGAGGCAT+CGG | 0.553805 | 3_1:+81354439 | Msa0379910:CDS |
| CTGATATTGACAGCTACTTG+TGG | 0.556622 | 3_1:+81354405 | Msa0379910:CDS |
| AAAACCTTCCCATGCTGGGG+AGG | 0.563359 | 3_1:+81355861 | Msa0379910:CDS |
| AGCGATAATCAGATGATCGC+TGG | 0.566868 | 3_1:-81356020 | None:intergenic |
| CTGTCAATATCAGATGAGAA+GGG | 0.570243 | 3_1:-81354395 | None:intergenic |
| GATCCTTGAGAACCATGCCC+GGG | 0.570927 | 3_1:-81355942 | None:intergenic |
| AAACCTTCCCATGCTGGGGA+GGG | 0.581514 | 3_1:+81355862 | Msa0379910:CDS |
| TCGTACTCAAAATAACATGC+TGG | 0.588880 | 3_1:-81356131 | None:intergenic |
| CAAGAAAACTCATATGATTG+TGG | 0.597824 | 3_1:+81355020 | Msa0379910:CDS |
| ATGAGATTTCACGTGAACCA+TGG | 0.601955 | 3_1:-81355753 | None:intergenic |
| GTCAAAACCTTCCCATGCTG+GGG | 0.614821 | 3_1:+81355858 | Msa0379910:CDS |
| ATAGCAGACAATACCGCAAG+GGG | 0.623428 | 3_1:-81354503 | None:intergenic |
| GAGGCTGATATCTGAACTCG+TGG | 0.629107 | 3_1:+81355726 | Msa0379910:CDS |
| AAGCCTCTCATTTGGTACAA+GGG | 0.639815 | 3_1:-81356179 | None:intergenic |
| TGTCAATATCAGATGAGAAG+GGG | 0.647892 | 3_1:-81354394 | None:intergenic |
| TATAGCAGACAATACCGCAA+GGG | 0.650245 | 3_1:-81354504 | None:intergenic |
| AAGTAAGAGGAGCTTCAGCA+AGG | 0.651363 | 3_1:-81355073 | None:intergenic |
| TCTGAACTCGTGGAAAACCA+TGG | 0.661929 | 3_1:+81355736 | Msa0379910:CDS |
| TACTACAGCAGGAACAACAT+CGG | 0.662535 | 3_1:+81355978 | Msa0379910:CDS |
| TCAAGCGAACACTGATCCAG+AGG | 0.666862 | 3_1:+81355707 | Msa0379910:CDS |
| GTGATCATCACTACCATCAG+AGG | 0.671831 | 3_1:-81355776 | None:intergenic |
| AAGGGCTCAAGATTGAGATG+AGG | 0.687868 | 3_1:-81356161 | None:intergenic |
| TGAGCATCTTGAGTTCAACA+GGG | 0.743931 | 3_1:+81355834 | Msa0379910:CDS |
| TAGCAGACAATACCGCAAGG+GGG | 0.771280 | 3_1:-81354502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAACATTATTATTAAG+TGG | - | chr3_1:81353243-81353262 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAAAAAAACA+AGG | - | chr3_1:81354333-81354352 | None:intergenic | 10.0% |
| !! | AAAATCAATATTAAAATTGT+CGG | - | chr3_1:81355602-81355621 | None:intergenic | 10.0% |
| !! | TAATGTCAAAAAATTTACAT+TGG | + | chr3_1:81353280-81353299 | Msa0379910:intron | 15.0% |
| !!! | NNNNNNAAATGTGTTTTTGA+GGG | - | chr3_1:81353365-81353384 | None:intergenic | 15.0% |
| !!! | NNNNNNNAAATGTGTTTTTG+AGG | - | chr3_1:81353366-81353385 | None:intergenic | 15.0% |
| !!! | CCTTATTTATTAATTTTGTT+AGG | - | chr3_1:81353785-81353804 | None:intergenic | 15.0% |
| !! | CCTAACAAAATTAATAAATA+AGG | + | chr3_1:81353782-81353801 | Msa0379910:intron | 15.0% |
| !!! | ATAAATTTTGTTACTTTTGA+TGG | - | chr3_1:81353995-81354014 | None:intergenic | 15.0% |
| !! | CATAATATATACATTCATTT+GGG | - | chr3_1:81354276-81354295 | None:intergenic | 15.0% |
| !!! | TTGTTTCAATTTTCTATTTT+TGG | + | chr3_1:81355364-81355383 | Msa0379910:intron | 15.0% |
| !!! | TTATCTGTTTTAATATTACA+AGG | + | chr3_1:81355467-81355486 | Msa0379910:intron | 15.0% |
| !!! | TATCTGTTTTAATATTACAA+GGG | + | chr3_1:81355468-81355487 | Msa0379910:intron | 15.0% |
| !! | TAAAACAGATAAATATAACT+AGG | - | chr3_1:81355561-81355580 | None:intergenic | 15.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | + | chr3_1:81353696-81353715 | Msa0379910:intron | 20.0% |
| !! | AACGAGATAAAACATAATTA+AGG | + | chr3_1:81353948-81353967 | Msa0379910:intron | 20.0% |
| !! | ACGAGATAAAACATAATTAA+GGG | + | chr3_1:81353949-81353968 | Msa0379910:intron | 20.0% |
| !! | ATTGGTATGTAAAAAAGAAA+GGG | - | chr3_1:81354189-81354208 | None:intergenic | 20.0% |
| !! | GCATAATATATACATTCATT+TGG | - | chr3_1:81354277-81354296 | None:intergenic | 20.0% |
| !! | TACTAGTTAATTGTATTGAA+CGG | + | chr3_1:81354580-81354599 | Msa0379910:intron | 20.0% |
| !! | AATCAAAATTATCAAGTGAT+AGG | - | chr3_1:81354847-81354866 | None:intergenic | 20.0% |
| !! | AAACATAAGAGAAAACAAAA+AGG | - | chr3_1:81354948-81354967 | None:intergenic | 20.0% |
| !! | AAGAAAACTACTTACAAAAT+TGG | - | chr3_1:81355126-81355145 | None:intergenic | 20.0% |
| !! | TTATGGAGAATCATTAAAAA+AGG | + | chr3_1:81355174-81355193 | Msa0379910:intron | 20.0% |
| !!! | TGGTTAATTGATTTTTAGAA+TGG | - | chr3_1:81355218-81355237 | None:intergenic | 20.0% |
| !!! | TGAAACAAAAAAAAAAGCAT+GGG | - | chr3_1:81355352-81355371 | None:intergenic | 20.0% |
| !! | TTGAAACAAAAAAAAAAGCA+TGG | - | chr3_1:81355353-81355372 | None:intergenic | 20.0% |
| ! | AGAAAGATGTATAAGATTGA+CGG | + | chr3_1:81352992-81353011 | Msa0379910:intron | 25.0% |
| ! | ATAAAAAAATATACGTAGCG+TGG | + | chr3_1:81353113-81353132 | Msa0379910:intron | 25.0% |
| ! | CAATTTCATTCATATCTTGT+TGG | - | chr3_1:81353597-81353616 | None:intergenic | 25.0% |
| ! | CAACAAGATATGAATGAAAT+TGG | + | chr3_1:81353595-81353614 | Msa0379910:intron | 25.0% |
| ! | CAACATGATATGAATGAAAT+TGG | + | chr3_1:81353663-81353682 | Msa0379910:intron | 25.0% |
| ! | CTCTCTGCAATAAATAATTA+TGG | - | chr3_1:81353916-81353935 | None:intergenic | 25.0% |
| ! | TTTATTGCAGAGAGAAAAAT+AGG | + | chr3_1:81353922-81353941 | Msa0379910:intron | 25.0% |
| !!! | CCTTTTTAGTTATCGTTTTA+GGG | - | chr3_1:81354043-81354062 | None:intergenic | 25.0% |
| !!! | TCCTTTTTAGTTATCGTTTT+AGG | - | chr3_1:81354044-81354063 | None:intergenic | 25.0% |
| ! | AAAACGATAACTAAAAAGGA+AGG | + | chr3_1:81354044-81354063 | Msa0379910:intron | 25.0% |
| ! | AAACGATAACTAAAAAGGAA+GGG | + | chr3_1:81354045-81354064 | Msa0379910:intron | 25.0% |
| ! | TATGTAACAGAATCTTATCA+CGG | - | chr3_1:81354100-81354119 | None:intergenic | 25.0% |
| ! | GATTGGTATGTAAAAAAGAA+AGG | - | chr3_1:81354190-81354209 | None:intergenic | 25.0% |
| !! | TTTTTACATACCAATCTTGA+AGG | + | chr3_1:81354194-81354213 | Msa0379910:intron | 25.0% |
| ! | ATATTGACGACTTTCAAATA+AGG | + | chr3_1:81354524-81354543 | Msa0379910:intron | 25.0% |
| !!! | TATCTGGAAGATTTTTTATG+TGG | - | chr3_1:81354678-81354697 | None:intergenic | 25.0% |
| ! | ACTTACAAAATTGGAAAACT+TGG | - | chr3_1:81355117-81355136 | None:intergenic | 25.0% |
| !! | TAGTTTTCTTAACTCAGTAT+TGG | + | chr3_1:81355136-81355155 | Msa0379910:intron | 25.0% |
| !!! | GGCTTAAGTCAATATTTTTA+TGG | + | chr3_1:81355157-81355176 | Msa0379910:intron | 25.0% |
| ! | GAATCATTAAAAAAGGTCAT+TGG | + | chr3_1:81355181-81355200 | Msa0379910:intron | 25.0% |
| ! | AATATGGATAATCAATCAAG+TGG | - | chr3_1:81355238-81355257 | None:intergenic | 25.0% |
| ! | AATGGTTAATTAAGTCAATC+AGG | - | chr3_1:81355291-81355310 | None:intergenic | 25.0% |
| !! | GATTGACTTAATTAACCATT+TGG | + | chr3_1:81355291-81355310 | Msa0379910:intron | 25.0% |
| !! | GATTTTTACGGTTTCTTATA+TGG | + | chr3_1:81355616-81355635 | Msa0379910:intron | 25.0% |
| ! | GGAAAAATACTAGTTATGTT+GGG | - | chr3_1:81355648-81355667 | None:intergenic | 25.0% |
| ! | TGGAAAAATACTAGTTATGT+TGG | - | chr3_1:81355649-81355668 | None:intergenic | 25.0% |
| ! | TACATCGAAAATATTGAGAA+TGG | + | chr3_1:81355802-81355821 | Msa0379910:CDS | 25.0% |
| !! | CGATAATTCAATATTTTCGA+TGG | + | chr3_1:81356044-81356063 | Msa0379910:CDS | 25.0% |
| !! | TAATTCAATATTTTCGATGG+AGG | + | chr3_1:81356047-81356066 | Msa0379910:CDS | 25.0% |
| ATGTAAATGCCAAAATGAGA+AGG | + | chr3_1:81352937-81352956 | Msa0379910:intron | 30.0% | |
| AAGTATATGTTAAGCTCACA+AGG | + | chr3_1:81353204-81353223 | Msa0379910:intron | 30.0% | |
| AACCTAATACAACAAATGAG+CGG | + | chr3_1:81353732-81353751 | Msa0379910:intron | 30.0% | |
| TAGGGTTATTTACACATATC+AGG | - | chr3_1:81354025-81354044 | None:intergenic | 30.0% | |
| CCCTAAAACGATAACTAAAA+AGG | + | chr3_1:81354040-81354059 | Msa0379910:intron | 30.0% | |
| ATGGAAAGAAAGACATAAAG+AGG | + | chr3_1:81354433-81354452 | Msa0379910:CDS | 30.0% | |
| ACATAGATTCTACATTGTTC+AGG | + | chr3_1:81354628-81354647 | Msa0379910:intron | 30.0% | |
| CATAGATTCTACATTGTTCA+GGG | + | chr3_1:81354629-81354648 | Msa0379910:intron | 30.0% | |
| TGTTCATCAATATCACTATC+TGG | - | chr3_1:81354694-81354713 | None:intergenic | 30.0% | |
| TTCAAGTGTGTATACACAAA+TGG | - | chr3_1:81354815-81354834 | None:intergenic | 30.0% | |
| TTGTGTATACACACTTGAAA+AGG | + | chr3_1:81354816-81354835 | Msa0379910:intron | 30.0% | |
| CAAGAAAACTCATATGATTG+TGG | + | chr3_1:81355020-81355039 | Msa0379910:CDS | 30.0% | |
| !! | TTGAATGGATTGAAAGTAAG+AGG | - | chr3_1:81355089-81355108 | None:intergenic | 30.0% |
| ! | GAAAACTTGGTTACTTTGAA+TGG | - | chr3_1:81355104-81355123 | None:intergenic | 30.0% |
| GATTATCCATATTCAATGAG+TGG | + | chr3_1:81355245-81355264 | Msa0379910:intron | 30.0% | |
| TGACTTAATTAACCATTTGG+TGG | + | chr3_1:81355294-81355313 | Msa0379910:intron | 30.0% | |
| GACTTAATTAACCATTTGGT+GGG | + | chr3_1:81355295-81355314 | Msa0379910:intron | 30.0% | |
| TATTAACATCTCCCAATTTG+TGG | + | chr3_1:81355419-81355438 | Msa0379910:intron | 30.0% | |
| AACATAAAGACAACTACACA+AGG | - | chr3_1:81355449-81355468 | None:intergenic | 30.0% | |
| ! | TCTCAATATTTTCGATGTAC+TGG | - | chr3_1:81355801-81355820 | None:intergenic | 30.0% |
| GAAAATATTGAGAATGGAAC+TGG | + | chr3_1:81355808-81355827 | Msa0379910:CDS | 30.0% | |
| ATAGAAATGACTCTATTGTC+TGG | + | chr3_1:81355886-81355905 | Msa0379910:CDS | 30.0% | |
| AAATGCCAAAATGAGAAGGA+AGG | + | chr3_1:81352941-81352960 | Msa0379910:intron | 35.0% | |
| AAGATGTATAAGATTGACGG+AGG | + | chr3_1:81352995-81353014 | Msa0379910:intron | 35.0% | |
| ! | AACAAGTAGAAGTGTAGAAC+CGG | + | chr3_1:81353076-81353095 | Msa0379910:intron | 35.0% |
| TTTATAACTTACCTGCTGAC+CGG | - | chr3_1:81353098-81353117 | None:intergenic | 35.0% | |
| ATATGTTAAGCTCACAAGGA+CGG | + | chr3_1:81353208-81353227 | Msa0379910:intron | 35.0% | |
| AAGGGATTGACATACGAATA+AGG | + | chr3_1:81353565-81353584 | Msa0379910:intron | 35.0% | |
| !!! | GTGCGATGCATTTTTTTAGA+TGG | + | chr3_1:81353685-81353704 | Msa0379910:intron | 35.0% |
| ACCTAATACAACAAATGAGC+GGG | + | chr3_1:81353733-81353752 | Msa0379910:intron | 35.0% | |
| CAAATGAGCGGGAAAATATT+AGG | + | chr3_1:81353744-81353763 | Msa0379910:intron | 35.0% | |
| CATACCAATCTTGAAGGAAA+TGG | + | chr3_1:81354200-81354219 | Msa0379910:intron | 35.0% | |
| ! | AATGCCATTTCCTTCAAGAT+TGG | - | chr3_1:81354207-81354226 | None:intergenic | 35.0% |
| TGTCAATATCAGATGAGAAG+GGG | - | chr3_1:81354397-81354416 | None:intergenic | 35.0% | |
| CTGTCAATATCAGATGAGAA+GGG | - | chr3_1:81354398-81354417 | None:intergenic | 35.0% | |
| TGATATTGACAGCTACTTGT+GGG | + | chr3_1:81354406-81354425 | Msa0379910:CDS | 35.0% | |
| ! | AGAAAGACATAAAGAGGCAT+CGG | + | chr3_1:81354439-81354458 | Msa0379910:CDS | 35.0% |
| ! | TGCTGTTGAATTGAGTTGTA+TGG | + | chr3_1:81354730-81354749 | Msa0379910:intron | 35.0% |
| !! | GTATGGTTCTGATGAACTAT+AGG | + | chr3_1:81354747-81354766 | Msa0379910:intron | 35.0% |
| CAAAAGTTCCTAGCATATGA+TGG | - | chr3_1:81354786-81354805 | None:intergenic | 35.0% | |
| GATATGCCGTACTTTATTGT+GGG | + | chr3_1:81354903-81354922 | Msa0379910:intron | 35.0% | |
| CAGTAACCCACAATAAAGTA+CGG | - | chr3_1:81354912-81354931 | None:intergenic | 35.0% | |
| ! | TCATATGAGTTTTCTTGCTG+TGG | - | chr3_1:81355017-81355036 | None:intergenic | 35.0% |
| CATTAGCCACTCATTGAATA+TGG | - | chr3_1:81355254-81355273 | None:intergenic | 35.0% | |
| TTAAGTCAATCAGGCATCAA+GGG | - | chr3_1:81355282-81355301 | None:intergenic | 35.0% | |
| ATTAAGTCAATCAGGCATCA+AGG | - | chr3_1:81355283-81355302 | None:intergenic | 35.0% | |
| AAAACAACAAACCCACCAAA+TGG | - | chr3_1:81355309-81355328 | None:intergenic | 35.0% | |
| GGCAATGAACTGAAAAAACT+GGG | - | chr3_1:81355540-81355559 | None:intergenic | 35.0% | |
| AGGCAATGAACTGAAAAAAC+TGG | - | chr3_1:81355541-81355560 | None:intergenic | 35.0% | |
| ! | AGTATTTTTCCAGCTCAATG+TGG | + | chr3_1:81355657-81355676 | Msa0379910:intron | 35.0% |
| ! | ATTGTCTGGATCATCGTTTT+TGG | + | chr3_1:81355900-81355919 | Msa0379910:CDS | 35.0% |
| ! | TCCTCAATCTTTTAACAACC+CGG | + | chr3_1:81355924-81355943 | Msa0379910:CDS | 35.0% |
| !! | CTGCATGTGCATTTGTTTTT+CGG | + | chr3_1:81356087-81356106 | Msa0379910:CDS | 35.0% |
| TCGTACTCAAAATAACATGC+TGG | - | chr3_1:81356134-81356153 | None:intergenic | 35.0% | |
| ! | ACCTTCCTTCCTTCTCATTT+TGG | - | chr3_1:81352949-81352968 | None:intergenic | 40.0% |
| ! | GAAGGAAGGTTGAAAGTATG+AGG | + | chr3_1:81352959-81352978 | Msa0379910:intron | 40.0% |
| ATGTATAAGATTGACGGAGG+TGG | + | chr3_1:81352998-81353017 | Msa0379910:intron | 40.0% | |
| TGTATAAGATTGACGGAGGT+GGG | + | chr3_1:81352999-81353018 | Msa0379910:intron | 40.0% | |
| TCCGCACAGGTTTATTGTAA+AGG | + | chr3_1:81353546-81353565 | Msa0379910:intron | 40.0% | |
| CCCTTTACAATAAACCTGTG+CGG | - | chr3_1:81353550-81353569 | None:intergenic | 40.0% | |
| CCGCACAGGTTTATTGTAAA+GGG | + | chr3_1:81353547-81353566 | Msa0379910:intron | 40.0% | |
| !! | TCCCGCTCATTTGTTGTATT+AGG | - | chr3_1:81353737-81353756 | None:intergenic | 40.0% |
| GCTGTCAATATCAGATGAGA+AGG | - | chr3_1:81354399-81354418 | None:intergenic | 40.0% | |
| CTGATATTGACAGCTACTTG+TGG | + | chr3_1:81354405-81354424 | Msa0379910:CDS | 40.0% | |
| TATAGCAGACAATACCGCAA+GGG | - | chr3_1:81354507-81354526 | None:intergenic | 40.0% | |
| ATATAGCAGACAATACCGCA+AGG | - | chr3_1:81354508-81354527 | None:intergenic | 40.0% | |
| CAGGGAACTACTTGAAAAAG+CGG | + | chr3_1:81354647-81354666 | Msa0379910:intron | 40.0% | |
| GACTCAATCCATCATATGCT+AGG | + | chr3_1:81354775-81354794 | Msa0379910:intron | 40.0% | |
| !! | TGTTTTTCAACGGCATGTGA+AGG | - | chr3_1:81354875-81354894 | None:intergenic | 40.0% |
| CACATGCCGTTGAAAAACAA+AGG | + | chr3_1:81354876-81354895 | Msa0379910:intron | 40.0% | |
| !!! | TCCCAGCCTTTGTTTTTCAA+CGG | - | chr3_1:81354885-81354904 | None:intergenic | 40.0% |
| GGATATGCCGTACTTTATTG+TGG | + | chr3_1:81354902-81354921 | Msa0379910:intron | 40.0% | |
| ATAAGCATGATCAACAGCTC+AGG | - | chr3_1:81355400-81355419 | None:intergenic | 40.0% | |
| CACAAGGAACTCCACAAATT+GGG | - | chr3_1:81355433-81355452 | None:intergenic | 40.0% | |
| ACACAAGGAACTCCACAAAT+TGG | - | chr3_1:81355434-81355453 | None:intergenic | 40.0% | |
| TGGGAGATGCAATATTCGAT+AGG | - | chr3_1:81355521-81355540 | None:intergenic | 40.0% | |
| ATGAGATTTCACGTGAACCA+TGG | - | chr3_1:81355756-81355775 | None:intergenic | 40.0% | |
| TTGAGCATCTTGAGTTCAAC+AGG | + | chr3_1:81355833-81355852 | Msa0379910:CDS | 40.0% | |
| TGAGCATCTTGAGTTCAACA+GGG | + | chr3_1:81355834-81355853 | Msa0379910:CDS | 40.0% | |
| ! | CCTCAATCTTTTAACAACCC+GGG | + | chr3_1:81355925-81355944 | Msa0379910:CDS | 40.0% |
| TACTACAGCAGGAACAACAT+CGG | + | chr3_1:81355978-81355997 | Msa0379910:CDS | 40.0% | |
| ATGATCGCTGGTCAAAAGAT+TGG | - | chr3_1:81356011-81356030 | None:intergenic | 40.0% | |
| GCCAAAATGAGAAGGAAGGA+AGG | + | chr3_1:81352945-81352964 | Msa0379910:intron | 45.0% | |
| GATTGAACACACCCACTTGT+AGG | - | chr3_1:81353142-81353161 | None:intergenic | 45.0% | |
| ACAGCTACTTGTGGGAAGAA+TGG | + | chr3_1:81354414-81354433 | Msa0379910:CDS | 45.0% | |
| ATAGCAGACAATACCGCAAG+GGG | - | chr3_1:81354506-81354525 | None:intergenic | 45.0% | |
| TTTCAACGGCATGTGAAGGA+TGG | - | chr3_1:81354871-81354890 | None:intergenic | 45.0% | |
| TGCCGTTGAAAAACAAAGGC+TGG | + | chr3_1:81354880-81354899 | Msa0379910:intron | 45.0% | |
| GCCGTTGAAAAACAAAGGCT+GGG | + | chr3_1:81354881-81354900 | Msa0379910:intron | 45.0% | |
| ACTGTCATGGAGTAAGCACT+AGG | - | chr3_1:81354992-81355011 | None:intergenic | 45.0% | |
| AAGTAAGAGGAGCTTCAGCA+AGG | - | chr3_1:81355076-81355095 | None:intergenic | 45.0% | |
| ! | TTTTCCAGCTCAATGTGGAC+TGG | + | chr3_1:81355662-81355681 | Msa0379910:intron | 45.0% |
| TCTGAACTCGTGGAAAACCA+TGG | + | chr3_1:81355736-81355755 | Msa0379910:CDS | 45.0% | |
| CGTGAAATCTCATCCTCTGA+TGG | + | chr3_1:81355763-81355782 | Msa0379910:CDS | 45.0% | |
| GTGATCATCACTACCATCAG+AGG | - | chr3_1:81355779-81355798 | None:intergenic | 45.0% | |
| CCCGGGTTGTTAAAAGATTG+AGG | - | chr3_1:81355928-81355947 | None:intergenic | 45.0% | |
| ! | ATCTTTTAACAACCCGGGCA+TGG | + | chr3_1:81355930-81355949 | Msa0379910:CDS | 45.0% |
| !! | CTCAAGGATCTTTTTGAGCC+AGG | + | chr3_1:81355955-81355974 | Msa0379910:CDS | 45.0% |
| AGCGATAATCAGATGATCGC+TGG | - | chr3_1:81356023-81356042 | None:intergenic | 45.0% | |
| AAGGGCTCAAGATTGAGATG+AGG | - | chr3_1:81356164-81356183 | None:intergenic | 45.0% | |
| !!! | AATTTTAATATTGATTTTTA+CGG | + | chr3_1:81355604-81355623 | Msa0379910:intron | 5.0% |
| TAAGATTGACGGAGGTGGGT+CGG | + | chr3_1:81353003-81353022 | Msa0379910:intron | 50.0% | |
| TAGCGTGGCATCCTACAAGT+GGG | + | chr3_1:81353128-81353147 | Msa0379910:intron | 50.0% | |
| GTATGAGCAATGCTAGCTGC+AGG | - | chr3_1:81353180-81353199 | None:intergenic | 50.0% | |
| AATAAACCTGTGCGGAGCAC+GGG | - | chr3_1:81353542-81353561 | None:intergenic | 50.0% | |
| CAATAAACCTGTGCGGAGCA+CGG | - | chr3_1:81353543-81353562 | None:intergenic | 50.0% | |
| ! | TTTGCGTTTTCTCCCCCTTG+CGG | + | chr3_1:81354490-81354509 | Msa0379910:CDS | 50.0% |
| TAGCAGACAATACCGCAAGG+GGG | - | chr3_1:81354505-81354524 | None:intergenic | 50.0% | |
| ! | TCTTGCTGTGGCAACTGTCA+TGG | - | chr3_1:81355005-81355024 | None:intergenic | 50.0% |
| CTAGGTAGTGCAGCAGAAAG+AGG | - | chr3_1:81355046-81355065 | None:intergenic | 50.0% | |
| CTTCAGCAAGGAAGAGCTCT+AGG | - | chr3_1:81355064-81355083 | None:intergenic | 50.0% | |
| GAAACCAGTCCACATTGAGC+TGG | - | chr3_1:81355669-81355688 | None:intergenic | 50.0% | |
| CGCTTGAGATAAGCTTCAGC+AGG | - | chr3_1:81355694-81355713 | None:intergenic | 50.0% | |
| TCAAGCGAACACTGATCCAG+AGG | + | chr3_1:81355707-81355726 | Msa0379910:CDS | 50.0% | |
| CGAGTTCAGATATCAGCCTC+TGG | - | chr3_1:81355726-81355745 | None:intergenic | 50.0% | |
| GAGGCTGATATCTGAACTCG+TGG | + | chr3_1:81355726-81355745 | Msa0379910:CDS | 50.0% | |
| CGTCAAAACCTTCCCATGCT+GGG | + | chr3_1:81355857-81355876 | Msa0379910:CDS | 50.0% | |
| GTCAAAACCTTCCCATGCTG+GGG | + | chr3_1:81355858-81355877 | Msa0379910:CDS | 50.0% | |
| TTCTATTCCCTCCCCAGCAT+GGG | - | chr3_1:81355872-81355891 | None:intergenic | 50.0% | |
| TTTCTATTCCCTCCCCAGCA+TGG | - | chr3_1:81355873-81355892 | None:intergenic | 50.0% | |
| AGATCCTTGAGAACCATGCC+CGG | - | chr3_1:81355946-81355965 | None:intergenic | 50.0% | |
| TTTGAGCCAGGTACTACAGC+AGG | + | chr3_1:81355967-81355986 | Msa0379910:CDS | 50.0% | |
| GTTGTTCCTGCTGTAGTACC+TGG | - | chr3_1:81355976-81355995 | None:intergenic | 50.0% | |
| GAAGTGTAGAACCGGTCAGC+AGG | + | chr3_1:81353084-81353103 | Msa0379910:intron | 55.0% | |
| GTAGCGTGGCATCCTACAAG+TGG | + | chr3_1:81353127-81353146 | Msa0379910:intron | 55.0% | |
| GCGTCAAAACCTTCCCATGC+TGG | + | chr3_1:81355856-81355875 | Msa0379910:CDS | 55.0% | |
| AAAACCTTCCCATGCTGGGG+AGG | + | chr3_1:81355861-81355880 | Msa0379910:CDS | 55.0% | |
| AAACCTTCCCATGCTGGGGA+GGG | + | chr3_1:81355862-81355881 | Msa0379910:CDS | 55.0% | |
| GATCCTTGAGAACCATGCCC+GGG | - | chr3_1:81355945-81355964 | None:intergenic | 55.0% | |
| ATTTGACCCGTGCTCCGCAC+AGG | + | chr3_1:81353533-81353552 | Msa0379910:intron | 60.0% | |
| ATTCCCTCCCCAGCATGGGA+AGG | - | chr3_1:81355868-81355887 | None:intergenic | 60.0% | |
| CAACCCGGGCATGGTTCTCA+AGG | + | chr3_1:81355939-81355958 | Msa0379910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 81352897 | 81356194 | 81352897 | ID=Msa0379910;Name=Msa0379910 |
| chr3_1 | mRNA | 81352897 | 81356194 | 81352897 | ID=Msa0379910-mRNA-1;Parent=Msa0379910;Name=Msa0379910-mRNA-1;_AED=0.18;_eAED=0.22;_QI=0|0|0|0.4|0.25|0.4|5|0|262 |
| chr3_1 | exon | 81352897 | 81352901 | 81352897 | ID=Msa0379910-mRNA-1:exon:20597;Parent=Msa0379910-mRNA-1 |
| chr3_1 | exon | 81354379 | 81354511 | 81354379 | ID=Msa0379910-mRNA-1:exon:20598;Parent=Msa0379910-mRNA-1 |
| chr3_1 | exon | 81354586 | 81354591 | 81354586 | ID=Msa0379910-mRNA-1:exon:20599;Parent=Msa0379910-mRNA-1 |
| chr3_1 | exon | 81355011 | 81355130 | 81355011 | ID=Msa0379910-mRNA-1:exon:20600;Parent=Msa0379910-mRNA-1 |
| chr3_1 | exon | 81355670 | 81356194 | 81355670 | ID=Msa0379910-mRNA-1:exon:20601;Parent=Msa0379910-mRNA-1 |
| chr3_1 | CDS | 81352897 | 81352901 | 81352897 | ID=Msa0379910-mRNA-1:cds;Parent=Msa0379910-mRNA-1 |
| chr3_1 | CDS | 81354379 | 81354511 | 81354379 | ID=Msa0379910-mRNA-1:cds;Parent=Msa0379910-mRNA-1 |
| chr3_1 | CDS | 81354586 | 81354591 | 81354586 | ID=Msa0379910-mRNA-1:cds;Parent=Msa0379910-mRNA-1 |
| chr3_1 | CDS | 81355011 | 81355130 | 81355011 | ID=Msa0379910-mRNA-1:cds;Parent=Msa0379910-mRNA-1 |
| chr3_1 | CDS | 81355670 | 81356194 | 81355670 | ID=Msa0379910-mRNA-1:cds;Parent=Msa0379910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
