AlfalfaGEDB | Msa0380800

M. sativa cultivar zhongmu-4 / Msa0380800

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380800	KEH35774.1	90.761	184	17	0	1	184	1	184	7.14e-114	332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380800	sp\|O49397\|ARR10_ARATH	53.571	224	58	1	6	183	11	234	5.31e-74	234

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380800	A0A072V176	90.761	184	17	0	1	184	1	184	3.41e-114	332

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TFs/TRs:

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Gene ID	Type	Classification
Msa0380800	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0380800	Msa0430540	0.872519	2.988687e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380800	MtrunA17_Chr3g0134481	90.761	184	17	0	1	184	1	184	6.57e-118	332
Msa0380800	MtrunA17_Chr3g0134461	70.769	195	46	2	1	184	1	195	1.46e-85	250
Msa0380800	MtrunA17_Chr3g0137101	82.707	133	23	0	1	133	1	133	1.52e-73	233
Msa0380800	MtrunA17_Chr3g0137101	72.917	48	13	0	134	181	200	247	6.67e-19	83.6
Msa0380800	MtrunA17_Chr4g0067981	46.444	239	68	3	3	181	26	264	3.00e-63	206
Msa0380800	MtrunA17_Chr2g0294911	45.532	235	70	3	5	181	26	260	3.75e-62	202
Msa0380800	MtrunA17_Chr3g0123131	44.915	236	68	2	8	181	13	248	1.29e-60	197
Msa0380800	MtrunA17_Chr8g0376881	45.339	236	69	2	6	181	23	258	3.23e-60	196
Msa0380800	MtrunA17_Chr1g0149841	71.318	129	37	0	5	133	2	130	5.41e-59	191
Msa0380800	MtrunA17_Chr1g0149841	82.609	46	8	0	136	181	195	240	1.43e-18	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380800	AT4G31920.1	53.571	224	58	1	6	183	11	234	5.40e-75	234
Msa0380800	AT2G25180.1	70.312	128	38	0	3	130	8	135	1.59e-59	195
Msa0380800	AT2G25180.1	64.000	50	18	0	132	181	195	244	2.92e-16	76.3
Msa0380800	AT5G58080.1	47.679	237	66	3	2	181	8	243	1.68e-56	188
Msa0380800	AT1G67710.1	44.118	238	66	5	9	181	8	243	4.09e-53	177
Msa0380800	AT3G16857.1	56.250	144	61	1	8	151	33	174	3.26e-50	171
Msa0380800	AT3G16857.1	73.913	46	12	0	136	181	241	286	1.58e-16	77.0
Msa0380800	AT3G16857.2	56.250	144	61	1	8	151	33	174	4.29e-50	171
Msa0380800	AT3G16857.2	73.913	46	12	0	136	181	241	286	1.65e-16	77.0
Msa0380800	AT2G01760.1	58.730	126	51	1	5	129	4	129	3.81e-44	150

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Find 88 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAGACATGTTTGACC+TGG	0.663608	3_1:-82760044	Msa0380800:CDS
AAACGGGCTATATTTAGATT+TGG	0.324315	3_1:+82758990	None:intergenic
AAATCTTACAAGAGAGGACA+TGG	0.601706	3_1:-82759485	Msa0380800:CDS
AAATTAAACCATATGGACAT+TGG	0.582977	3_1:+82759215	None:intergenic
AACTATCCCACTGGGTGAAA+AGG	0.434436	3_1:+82759299	None:intergenic
AAGGTCTTCAATATTATTTA+TGG	0.259242	3_1:+82759055	None:intergenic
AATGTTTCTGGTTTATGAAA+TGG	0.388291	3_1:-82759392	Msa0380800:three_prime_UTR
ACAATCTTTATTTATTTGCT+CGG	0.422303	3_1:-82760494	None:intergenic
ACATTTGGCAGCATGTAATT+CGG	0.438242	3_1:-82759710	Msa0380800:CDS
ACCTAATAAGGACATGCTCA+TGG	0.580944	3_1:+82759151	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTAGAGAAGAGAGAATAA+TGG	-	chr3_1:82759012-82759031	Msa0380800:three_prime_UTR	30.0%
CGTTATTACATTACTAGTTG+TGG	+	chr3_1:82759391-82759410	None:intergenic	30.0%
TGTTGAAAATCTTACAAGAG+AGG	-	chr3_1:82759984-82760003	Msa0380800:CDS	30.0%
TAGTAGAGAAGAGAGAATAA+TGG	-	chr3_1:82759012-82759031	Msa0380800:three_prime_UTR	30.0%
CGTTATTACATTACTAGTTG+TGG	+	chr3_1:82759391-82759410	None:intergenic	30.0%
TGTTGAAAATCTTACAAGAG+AGG	-	chr3_1:82759984-82760003	Msa0380800:CDS	30.0%
GTTTCCAAAATCATGAGAGA+AGG	+	chr3_1:82759097-82759116	None:intergenic	35.0%
GTATAAAAAGAAACACACCG+TGG	+	chr3_1:82759141-82759160	None:intergenic	35.0%
ACTTTGTACCTGTTATTGCT+TGG	-	chr3_1:82759227-82759246	Msa0380800:three_prime_UTR	35.0%
AAACATAGACATGTTTGACC+TGG	-	chr3_1:82759431-82759450	Msa0380800:three_prime_UTR	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	82758992	82760505	82758992	ID=Msa0380800;Name=Msa0380800
chr3_1	mRNA	82758992	82760505	82758992	ID=Msa0380800-mRNA-1;Parent=Msa0380800;Name=Msa0380800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39\|1\|1\|1\|1\|1\|4\|467\|184
chr3_1	exon	82758992	82759547	82758992	ID=Msa0380800-mRNA-1:exon:21129;Parent=Msa0380800-mRNA-1
chr3_1	exon	82759631	82759831	82759631	ID=Msa0380800-mRNA-1:exon:21128;Parent=Msa0380800-mRNA-1
chr3_1	exon	82759960	82760112	82759960	ID=Msa0380800-mRNA-1:exon:21127;Parent=Msa0380800-mRNA-1
chr3_1	exon	82760355	82760505	82760355	ID=Msa0380800-mRNA-1:exon:21126;Parent=Msa0380800-mRNA-1
chr3_1	five_prime_UTR	82760467	82760505	82760467	ID=Msa0380800-mRNA-1:five_prime_utr;Parent=Msa0380800-mRNA-1
chr3_1	CDS	82760355	82760466	82760355	ID=Msa0380800-mRNA-1:cds;Parent=Msa0380800-mRNA-1
chr3_1	CDS	82759960	82760112	82759960	ID=Msa0380800-mRNA-1:cds;Parent=Msa0380800-mRNA-1
chr3_1	CDS	82759631	82759831	82759631	ID=Msa0380800-mRNA-1:cds;Parent=Msa0380800-mRNA-1
chr3_1	CDS	82759459	82759547	82759459	ID=Msa0380800-mRNA-1:cds;Parent=Msa0380800-mRNA-1
chr3_1	three_prime_UTR	82758992	82759458	82758992	ID=Msa0380800-mRNA-1:three_prime_utr;Parent=Msa0380800-mRNA-1

Gene Sequence

>Msa0380800

ATGGATGATTCCAGTGATCAATTTCCCATCGGAATGCGTGTTCTCGCTGTCGACGACGATCCTCCTTCTCTCATGATTTTGGAAACTCTCCTCCGATCATGTCAATACCACGTAACCACAACTAGTAATGTAATAACGGCATTGACTATGTTGCGAGAAAACATAGACATGTTTGACCTGGTAATCGCTGAAGTTCACATGCCTGACATGGATGGACTTAAGCTGCTGGAACTTGTGGGACTTGAAATGGACCTTCCTGTCATAATGTTGTCTGCATATGGTGATACGGAGCTGGTGATGAAGGCAATTTCCCACGGTGCCCGTGATTTTCTGCTGAAACCTGTGAGATTGGAGGAGCTAAGGAACATTTGGCAGCATGTAATTCGGAATACGGAGTCCCAGTTTGTTTGGTCTATGGAACTGCACCGCAAGTTTCTTGAAGCTGTTAATCAGTTAGGAGTTGACAAGGCTGTACCCAAAAAGATTTTTGAATTGATGAATGTTGAAAATCTTACAAGAGAGGACATGGCGACCCATCTCCAGGCACTTTTCTAG

Protein sequence

>Msa0380800

MDDSSDQFPIGMRVLAVDDDPPSLMILETLLRSCQYHVTTTSNVITALTMLRENIDMFDLVIAEVHMPDMDGLKLLELVGLEMDLPVIMLSAYGDTELVMKAISHGARDFLLKPVRLEELRNIWQHVIRNTESQFVWSMELHRKFLEAVNQLGVDKAVPKKIFELMNVENLTREDMATHLQALF*