Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381200 | XP_013461784.1 | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381200 | sp|F4IXE7|IDM1_ARATH | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.95e-63 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381200 | A0A072V1D9 | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0381200 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0381200 | Msa0431040 | 0.975829 | 1.122631e-140 | -8.615850e-47 |
| Msa0381200 | Msa1413860 | 0.999334 | 6.412501e-304 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381200 | MtrunA17_Chr3g0134811 | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
| Msa0381200 | MtrunA17_Chr7g0270101 | 71.160 | 638 | 138 | 3 | 44 | 658 | 182 | 796 | 0.0 | 873 |
| Msa0381200 | MtrunA17_Chr7g0270101 | 66.250 | 80 | 24 | 1 | 22 | 101 | 74 | 150 | 5.59e-19 | 91.7 |
| Msa0381200 | MtrunA17_Chr3g0134821 | 65.954 | 608 | 134 | 3 | 51 | 658 | 307 | 841 | 0.0 | 761 |
| Msa0381200 | MtrunA17_Chr3g0134821 | 34.783 | 253 | 94 | 7 | 1 | 190 | 1 | 245 | 5.62e-21 | 98.2 |
| Msa0381200 | MtrunA17_Chr5g0407211 | 72.955 | 440 | 101 | 5 | 223 | 658 | 3 | 428 | 0.0 | 665 |
| Msa0381200 | MtrunA17_Chr5g0407251 | 72.500 | 440 | 103 | 5 | 223 | 658 | 3 | 428 | 0.0 | 659 |
| Msa0381200 | MtrunA17_Chr3g0134851 | 47.360 | 606 | 166 | 10 | 57 | 651 | 3 | 466 | 6.89e-147 | 434 |
| Msa0381200 | MtrunA17_Chr5g0430361 | 40.826 | 436 | 225 | 8 | 222 | 651 | 651 | 1059 | 6.94e-106 | 345 |
| Msa0381200 | MtrunA17_Chr3g0105291 | 41.149 | 435 | 221 | 9 | 222 | 649 | 602 | 1008 | 1.67e-104 | 342 |
| Msa0381200 | MtrunA17_Chr2g0316251 | 35.412 | 449 | 257 | 9 | 206 | 649 | 746 | 1166 | 2.54e-79 | 275 |
| Msa0381200 | MtrunA17_Chr1g0205451 | 32.715 | 431 | 268 | 4 | 220 | 649 | 603 | 1012 | 1.55e-67 | 241 |
| Msa0381200 | MtrunA17_Chr1g0185491 | 32.045 | 440 | 265 | 8 | 220 | 651 | 809 | 1222 | 2.53e-65 | 234 |
| Msa0381200 | MtrunA17_Chr7g0259981 | 31.562 | 320 | 188 | 6 | 338 | 655 | 8 | 298 | 5.88e-46 | 165 |
| Msa0381200 | MtrunA17_Chr1g0182481 | 26.013 | 469 | 250 | 15 | 224 | 649 | 478 | 892 | 6.03e-43 | 166 |
| Msa0381200 | MtrunA17_Chr7g0265211 | 25.263 | 475 | 237 | 14 | 249 | 656 | 527 | 950 | 7.14e-38 | 150 |
| Msa0381200 | MtrunA17_Chr1g0179841 | 24.837 | 459 | 241 | 12 | 257 | 651 | 386 | 804 | 1.29e-30 | 128 |
| Msa0381200 | MtrunA17_Chr4g0028111 | 26.265 | 415 | 197 | 12 | 272 | 621 | 189 | 559 | 4.62e-27 | 116 |
| Msa0381200 | MtrunA17_Chr4g0055731 | 22.973 | 444 | 246 | 15 | 220 | 649 | 108 | 469 | 5.99e-23 | 102 |
| Msa0381200 | MtrunA17_Chr2g0320451 | 29.630 | 189 | 112 | 6 | 469 | 653 | 852 | 1023 | 1.92e-18 | 90.1 |
| Msa0381200 | MtrunA17_Chr4g0025251 | 26.692 | 266 | 156 | 8 | 412 | 652 | 453 | 704 | 1.75e-17 | 86.7 |
| Msa0381200 | MtrunA17_Chr3g0139561 | 32.086 | 187 | 98 | 7 | 441 | 620 | 191 | 355 | 9.27e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381200 | AT5G58610.4 | 40.181 | 443 | 237 | 7 | 211 | 649 | 359 | 777 | 1.40e-101 | 330 |
| Msa0381200 | AT5G58610.8 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.32e-99 | 328 |
| Msa0381200 | AT5G58610.2 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.32e-99 | 328 |
| Msa0381200 | AT5G58610.3 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.76e-99 | 328 |
| Msa0381200 | AT5G58610.5 | 40.181 | 443 | 237 | 7 | 211 | 649 | 581 | 999 | 3.16e-99 | 328 |
| Msa0381200 | AT5G58610.7 | 40.181 | 443 | 237 | 7 | 211 | 649 | 581 | 999 | 4.86e-99 | 327 |
| Msa0381200 | AT5G58610.6 | 38.095 | 441 | 223 | 7 | 211 | 649 | 581 | 973 | 7.20e-88 | 296 |
| Msa0381200 | AT5G58610.1 | 38.095 | 441 | 223 | 7 | 211 | 649 | 581 | 973 | 1.15e-87 | 296 |
| Msa0381200 | AT5G58610.10 | 39.642 | 391 | 208 | 7 | 211 | 597 | 590 | 956 | 2.83e-84 | 285 |
| Msa0381200 | AT5G58610.9 | 39.642 | 391 | 208 | 7 | 211 | 597 | 581 | 947 | 5.12e-84 | 284 |
| Msa0381200 | AT5G36740.5 | 32.054 | 443 | 260 | 8 | 215 | 649 | 540 | 949 | 7.09e-70 | 247 |
| Msa0381200 | AT5G36740.1 | 32.054 | 443 | 260 | 8 | 215 | 649 | 540 | 949 | 7.09e-70 | 247 |
| Msa0381200 | AT5G58610.11 | 38.244 | 353 | 190 | 7 | 211 | 559 | 581 | 909 | 1.02e-68 | 241 |
| Msa0381200 | AT1G05380.3 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
| Msa0381200 | AT1G05380.1 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
| Msa0381200 | AT1G05380.2 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
| Msa0381200 | AT5G36740.4 | 31.473 | 448 | 266 | 8 | 215 | 649 | 387 | 806 | 1.37e-67 | 239 |
| Msa0381200 | AT3G14980.5 | 31.364 | 440 | 266 | 8 | 222 | 655 | 575 | 984 | 1.85e-64 | 231 |
| Msa0381200 | AT3G14980.6 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
| Msa0381200 | AT3G14980.1 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
| Msa0381200 | AT3G14980.2 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
| Msa0381200 | AT3G14980.3 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 3.21e-64 | 230 |
| Msa0381200 | AT5G36670.4 | 29.847 | 459 | 263 | 10 | 215 | 649 | 540 | 963 | 4.85e-61 | 221 |
| Msa0381200 | AT5G36670.5 | 29.847 | 459 | 263 | 10 | 215 | 649 | 540 | 963 | 4.85e-61 | 221 |
| Msa0381200 | AT4G14920.2 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.02e-60 | 220 |
| Msa0381200 | AT4G14920.1 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.02e-60 | 220 |
| Msa0381200 | AT4G14920.3 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.11e-60 | 220 |
| Msa0381200 | AT5G36670.3 | 29.310 | 464 | 269 | 10 | 215 | 649 | 387 | 820 | 1.24e-58 | 214 |
| Msa0381200 | AT5G36670.2 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
| Msa0381200 | AT5G36740.2 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
| Msa0381200 | AT5G36740.3 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
| Msa0381200 | AT5G36670.1 | 29.310 | 464 | 269 | 10 | 215 | 649 | 540 | 973 | 2.74e-58 | 213 |
| Msa0381200 | AT5G63900.1 | 36.570 | 309 | 169 | 8 | 346 | 651 | 258 | 542 | 4.97e-58 | 205 |
| Msa0381200 | AT3G53680.2 | 28.859 | 447 | 222 | 14 | 224 | 624 | 411 | 807 | 8.31e-44 | 169 |
| Msa0381200 | AT3G53680.1 | 28.859 | 447 | 222 | 14 | 224 | 624 | 409 | 805 | 9.47e-44 | 169 |
| Msa0381200 | AT3G14980.4 | 30.145 | 345 | 205 | 8 | 222 | 560 | 620 | 934 | 4.64e-42 | 164 |
| Msa0381200 | AT2G37520.1 | 26.025 | 488 | 239 | 15 | 224 | 651 | 392 | 817 | 5.68e-42 | 163 |
| Msa0381200 | AT2G27980.1 | 26.389 | 504 | 263 | 14 | 217 | 652 | 597 | 1060 | 2.76e-38 | 152 |
| Msa0381200 | AT2G36720.1 | 25.272 | 459 | 239 | 13 | 257 | 653 | 557 | 973 | 9.92e-38 | 151 |
| Msa0381200 | AT2G36720.2 | 25.272 | 459 | 239 | 13 | 257 | 653 | 557 | 973 | 9.92e-38 | 151 |
Find 118 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACATTGTTGTTTGCATTT+TGG | 0.154123 | 3_1:+83189760 | None:intergenic |
| GTTGCAACTATAAGAATTTA+TGG | 0.208645 | 3_1:-83189277 | Msa0381200:CDS |
| AAGGCCATATAGGTCTATTT+AGG | 0.215735 | 3_1:+83188996 | None:intergenic |
| CCAACTATTGATGCTTTATC+TGG | 0.251503 | 3_1:-83189409 | Msa0381200:CDS |
| AACACCATCATTATTTGCTT+TGG | 0.281757 | 3_1:+83189924 | None:intergenic |
| TTCTGTCTGAAGAAGCTATT+AGG | 0.283860 | 3_1:-83189583 | Msa0381200:CDS |
| AGGTTGCAAATAAAATAAAT+TGG | 0.285418 | 3_1:-83189549 | Msa0381200:CDS |
| TAGGTCTATTTAGGGATTTA+AGG | 0.304954 | 3_1:+83189005 | None:intergenic |
| GTTTGTTCTATTTGTGGTTT+GGG | 0.311387 | 3_1:-83189904 | Msa0381200:CDS |
| GCTATTAGGGAAACCAATTA+AGG | 0.314529 | 3_1:-83189569 | Msa0381200:CDS |
| AAAGGTATTCACTTGTTTCT+TGG | 0.322354 | 3_1:-83190284 | Msa0381200:CDS |
| TGTGTAAAGGCTACAAGATT+TGG | 0.323605 | 3_1:-83189676 | Msa0381200:CDS |
| GTTGATAAAGAATCAAGTTT+TGG | 0.324712 | 3_1:-83190262 | Msa0381200:CDS |
| AGGCCATATAGGTCTATTTA+GGG | 0.326281 | 3_1:+83188997 | None:intergenic |
| AATCCCTAAATAGACCTATA+TGG | 0.346948 | 3_1:-83189000 | Msa0381200:CDS |
| TGTTTGTTCTATTTGTGGTT+TGG | 0.372212 | 3_1:-83189905 | Msa0381200:CDS |
| GAAAATGGGTAAAGTCATTT+CGG | 0.376245 | 3_1:-83189299 | Msa0381200:CDS |
| TATGGCCTTGTATTGCTTGA+TGG | 0.376913 | 3_1:-83188982 | None:intergenic |
| CTTAGGTCTCGATCAAGTTC+CGG | 0.377173 | 3_1:-83189830 | Msa0381200:CDS |
| TTAGGTTCTGGGCAGTTCTC+AGG | 0.378707 | 3_1:+83190900 | None:intergenic |
| CGTGTTAATTTCACTATCAC+TGG | 0.385095 | 3_1:-83190150 | Msa0381200:CDS |
| CCCTACTTCAGAACTTGCTT+CGG | 0.386240 | 3_1:+83189960 | None:intergenic |
| CCAGATAAAGCATCAATAGT+TGG | 0.388520 | 3_1:+83189409 | None:intergenic |
| AGTAACAATGTTGTCAAAAG+AGG | 0.388998 | 3_1:-83190210 | Msa0381200:CDS |
| TCAGGTTCTATGTTGAAATC+AGG | 0.401611 | 3_1:+83190918 | None:intergenic |
| AGTATTAAAGATGAGTATAA+TGG | 0.402129 | 3_1:-83190367 | Msa0381200:CDS |
| GATGGTGTTTGTTCTATTTG+TGG | 0.402818 | 3_1:-83189910 | Msa0381200:CDS |
| CAAATTGACACTTGTCTTCA+CGG | 0.405716 | 3_1:+83189068 | None:intergenic |
| TTCTTCAATGCAACTCTCGC+AGG | 0.405765 | 3_1:+83190845 | None:intergenic |
| CAATTTCTTCGTCTCTGTTA+CGG | 0.406401 | 3_1:-83190776 | Msa0381200:CDS |
| ACCATCCACTACTATCTTGT+TGG | 0.407099 | 3_1:-83190094 | Msa0381200:CDS |
| TGCTATTGCTGCTGCTTCCT+CGG | 0.411590 | 3_1:+83190665 | None:intergenic |
| GCATTCCACCTCGTTTGCTT+AGG | 0.414402 | 3_1:-83189847 | Msa0381200:CDS |
| GAGAAGAATTCAGAGGTTTA+CGG | 0.421103 | 3_1:-83190345 | Msa0381200:CDS |
| GCTGCTTCCTCGGATTCTCT+TGG | 0.429778 | 3_1:+83190675 | None:intergenic |
| CCCACCGAATTAGTAACTTC+TGG | 0.432390 | 3_1:+83190465 | None:intergenic |
| TCTGTCTGAAGAAGCTATTA+GGG | 0.432712 | 3_1:-83189582 | Msa0381200:CDS |
| TTTCACTATCACTGGATTTG+AGG | 0.433458 | 3_1:-83190142 | Msa0381200:CDS |
| ATCAAGTTCCGGATGGTGAT+TGG | 0.433575 | 3_1:-83189819 | Msa0381200:CDS |
| CATAAACGCTTGAATTTCCA+TGG | 0.434704 | 3_1:-83189343 | Msa0381200:CDS |
| TATAAGAATTTATGGTCAAA+AGG | 0.441015 | 3_1:-83189269 | Msa0381200:CDS |
| TCAGAGTTCGCATGATGAAA+AGG | 0.443317 | 3_1:-83190034 | Msa0381200:CDS |
| CAGATAAAGCATCAATAGTT+GGG | 0.446006 | 3_1:+83189410 | None:intergenic |
| TGTTGCTTCTGCTGTTTCCT+CGG | 0.450642 | 3_1:+83190731 | None:intergenic |
| CAGAGTTCGCATGATGAAAA+GGG | 0.457917 | 3_1:-83190033 | Msa0381200:CDS |
| GCTACTGGTGCTGCAGTCGA+AGG | 0.458616 | 3_1:+83190801 | None:intergenic |
| TGAACCAGAAGTTACTAATT+CGG | 0.467506 | 3_1:-83190469 | Msa0381200:CDS |
| CAAGCAATACAAGGCCATAT+AGG | 0.468400 | 3_1:+83188986 | None:intergenic |
| CTGCAGTCGAAGGGTGTTTG+AGG | 0.471352 | 3_1:+83190811 | None:intergenic |
| GACGAAGAAATTGCTGCTAC+TGG | 0.475004 | 3_1:+83190786 | None:intergenic |
| GACACGTGGACAAAAGCGTT+TGG | 0.477202 | 3_1:-83189106 | Msa0381200:CDS |
| GAGAAACAGTTGACACGCTT+AGG | 0.478300 | 3_1:-83189169 | Msa0381200:CDS |
| AGGCTCATGCTGGTTGTACA+AGG | 0.491245 | 3_1:-83190122 | Msa0381200:CDS |
| AAATTGACACTTGTCTTCAC+GGG | 0.497364 | 3_1:+83189069 | None:intergenic |
| GAGAGGGAAGGTATCAAAGA+GGG | 0.502506 | 3_1:-83190319 | Msa0381200:CDS |
| TACTACGGTGTCAACATCAA+TGG | 0.502626 | 3_1:-83190517 | Msa0381200:CDS |
| TTGTCTTCGATATTGTTCCT+TGG | 0.503462 | 3_1:+83189222 | None:intergenic |
| ATCATCAGAAGTTGATTCAT+CGG | 0.513368 | 3_1:+83190629 | None:intergenic |
| GGAAGACGGAAGGTCATTGT+TGG | 0.514903 | 3_1:-83190073 | Msa0381200:CDS |
| ACTGGATTTGAGGCTCATGC+TGG | 0.514944 | 3_1:-83190132 | Msa0381200:CDS |
| TATCAAAGAGGGAAGGTACA+AGG | 0.524975 | 3_1:-83190308 | Msa0381200:CDS |
| CCACGTGTCTATAGCATCCT+CGG | 0.528623 | 3_1:+83189120 | None:intergenic |
| CCGAAGCAAGTTCTGAAGTA+GGG | 0.528703 | 3_1:-83189960 | Msa0381200:CDS |
| TCTTCAATGCAACTCTCGCA+GGG | 0.531694 | 3_1:+83190846 | None:intergenic |
| GTTACTAATTCGGTGGGTAG+TGG | 0.540215 | 3_1:-83190459 | Msa0381200:CDS |
| TGCAGTCGAAGGGTGTTTGA+GGG | 0.545311 | 3_1:+83190812 | None:intergenic |
| TCCGAAGCAAGTTCTGAAGT+AGG | 0.548155 | 3_1:-83189961 | Msa0381200:CDS |
| ACGCTTAGGAGTTGAAAGCT+TGG | 0.553379 | 3_1:-83189155 | Msa0381200:CDS |
| CAGACGATTGTGGTAGAAGA+GGG | 0.555231 | 3_1:-83190392 | Msa0381200:CDS |
| CTACTGGTGCTGCAGTCGAA+GGG | 0.556866 | 3_1:+83190802 | None:intergenic |
| TGCGAGAGTTGCATTGAAGA+AGG | 0.557070 | 3_1:-83190843 | Msa0381200:CDS |
| AACTACCATCAAGCAATACA+AGG | 0.564139 | 3_1:+83188977 | None:intergenic |
| GGACAAAACCAATCACCATC+CGG | 0.566171 | 3_1:+83189811 | None:intergenic |
| CAGAGGTTTACGGTAAGAGA+GGG | 0.567218 | 3_1:-83190335 | Msa0381200:CDS |
| TCGGTGGGTAGTGGTAAAAG+AGG | 0.571961 | 3_1:-83190450 | Msa0381200:CDS |
| AAATCACATTATAGAAACCA+TGG | 0.572412 | 3_1:+83189326 | None:intergenic |
| GGTAGCCACGAAAACTATCT+CGG | 0.575564 | 3_1:+83189243 | None:intergenic |
| TATAATGGAGAAGAATTCAG+AGG | 0.575599 | 3_1:-83190352 | Msa0381200:CDS |
| TCAGACGATTGTGGTAGAAG+AGG | 0.577488 | 3_1:-83190393 | Msa0381200:CDS |
| TCAGAGGTTTACGGTAAGAG+AGG | 0.577597 | 3_1:-83190336 | Msa0381200:CDS |
| GTAACAATGTTGTCAAAAGA+GGG | 0.581494 | 3_1:-83190209 | Msa0381200:CDS |
| TGTTCTATTTGTGGTTTGGG+AGG | 0.585455 | 3_1:-83189901 | Msa0381200:CDS |
| ACTACTATCTTGTTGGAAGA+CGG | 0.590421 | 3_1:-83190087 | Msa0381200:CDS |
| AAAGCGACCAAGAGAATCCG+AGG | 0.592053 | 3_1:-83190682 | Msa0381200:CDS |
| AGAGAGGGAAGGTATCAAAG+AGG | 0.595325 | 3_1:-83190320 | Msa0381200:CDS |
| GTTTCCAAAGCAAATAATGA+TGG | 0.599744 | 3_1:-83189928 | Msa0381200:CDS |
| ACCAGAAGTTACTAATTCGG+TGG | 0.600989 | 3_1:-83190466 | Msa0381200:CDS |
| AAAGAGATTGAGAGAATCCG+AGG | 0.612293 | 3_1:-83190748 | Msa0381200:CDS |
| GAGAAGAATTCAGACGATTG+TGG | 0.613172 | 3_1:-83190402 | Msa0381200:CDS |
| GTCATTGTTGGAATGTCAGA+GGG | 0.614589 | 3_1:-83190061 | Msa0381200:CDS |
| AGAGGGAAGGTACAAGGGAA+AGG | 0.618121 | 3_1:-83190302 | Msa0381200:CDS |
| GTCTTCCAACAAGATAGTAG+TGG | 0.619064 | 3_1:+83190089 | None:intergenic |
| GGTCATTGTTGGAATGTCAG+AGG | 0.622266 | 3_1:-83190062 | Msa0381200:CDS |
| AAAGAAGAGAAAGTTGAATG+TGG | 0.626130 | 3_1:-83189461 | Msa0381200:CDS |
| CCAGAAGTTACTAATTCGGT+GGG | 0.626761 | 3_1:-83190465 | Msa0381200:CDS |
| TTCTGAATCAACTTCTGACG+AGG | 0.630454 | 3_1:-83190583 | Msa0381200:CDS |
| TCCAACAAGATAGTAGTGGA+TGG | 0.630549 | 3_1:+83190093 | None:intergenic |
| CAAACGAGGTGGAATGCAGA+AGG | 0.631169 | 3_1:+83189853 | None:intergenic |
| GAGAGTTGCATTGAAGAAGG+AGG | 0.635933 | 3_1:-83190840 | Msa0381200:CDS |
| GGGTAGTGGTAAAAGAGGAA+AGG | 0.636646 | 3_1:-83190445 | Msa0381200:CDS |
| AGAGTTGCATTGAAGAAGGA+GGG | 0.637310 | 3_1:-83190839 | Msa0381200:CDS |
| ATCAAAGAGGGAAGGTACAA+GGG | 0.637578 | 3_1:-83190307 | Msa0381200:CDS |
| CTATCTTGTTGGAAGACGGA+AGG | 0.639850 | 3_1:-83190083 | Msa0381200:CDS |
| GGGAAGGTATCAAAGAGGGA+AGG | 0.651040 | 3_1:-83190315 | Msa0381200:CDS |
| AGAGTTCGCATGATGAAAAG+GGG | 0.652963 | 3_1:-83190032 | Msa0381200:CDS |
| TCTATGTTGAAATCAGGAGG+TGG | 0.653673 | 3_1:+83190924 | None:intergenic |
| GGTTCTATGTTGAAATCAGG+AGG | 0.654128 | 3_1:+83190921 | None:intergenic |
| GGTTTACGGTAAGAGAGGGA+AGG | 0.658054 | 3_1:-83190331 | Msa0381200:CDS |
| AAGATTTGGATCTAGTCACA+TGG | 0.660288 | 3_1:-83189662 | Msa0381200:CDS |
| AATTTGAGTAGTGATGATGA+TGG | 0.661624 | 3_1:-83189514 | Msa0381200:CDS |
| AAGGAACAATATCGAAGACA+AGG | 0.663403 | 3_1:-83189220 | Msa0381200:CDS |
| CCGAGGATGCTATAGACACG+TGG | 0.685477 | 3_1:-83189120 | Msa0381200:CDS |
| TTGAGTAGTGATGATGATGG+CGG | 0.685672 | 3_1:-83189511 | Msa0381200:CDS |
| GGTCTCGATCAAGTTCCGGA+TGG | 0.685979 | 3_1:-83189826 | Msa0381200:CDS |
| GATCGAGACCTAAGCAAACG+AGG | 0.703690 | 3_1:+83189839 | None:intergenic |
| CGAGACCTAAGCAAACGAGG+TGG | 0.726299 | 3_1:+83189842 | None:intergenic |
| CGTGTCTATAGCATCCTCGG+AGG | 0.738184 | 3_1:+83189123 | None:intergenic |
| TGAAAAGGGGAATCATTGTG+TGG | 0.749018 | 3_1:-83190019 | Msa0381200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTAAAGATGAGTATAA+TGG | - | chr3_1:83189557-83189576 | Msa0381200:CDS | 20.0% |
| !!! | ATTTTATTTGCAACCTTAAT+TGG | + | chr3_1:83190371-83190390 | None:intergenic | 20.0% |
| !! | AGGTTGCAAATAAAATAAAT+TGG | - | chr3_1:83190375-83190394 | Msa0381200:CDS | 20.0% |
| !!! | TAATGTGATTTTAGAGAAAA+TGG | - | chr3_1:83190610-83190629 | Msa0381200:CDS | 20.0% |
| !!! | AATGTGATTTTAGAGAAAAT+GGG | - | chr3_1:83190611-83190630 | Msa0381200:CDS | 20.0% |
| !! | TATAAGAATTTATGGTCAAA+AGG | - | chr3_1:83190655-83190674 | Msa0381200:CDS | 20.0% |
| !! | AGTATTAAAGATGAGTATAA+TGG | - | chr3_1:83189557-83189576 | Msa0381200:CDS | 20.0% |
| !!! | ATTTTATTTGCAACCTTAAT+TGG | + | chr3_1:83190371-83190390 | None:intergenic | 20.0% |
| !! | AGGTTGCAAATAAAATAAAT+TGG | - | chr3_1:83190375-83190394 | Msa0381200:CDS | 20.0% |
| !!! | TAATGTGATTTTAGAGAAAA+TGG | - | chr3_1:83190610-83190629 | Msa0381200:CDS | 20.0% |
| !!! | AATGTGATTTTAGAGAAAAT+GGG | - | chr3_1:83190611-83190630 | Msa0381200:CDS | 20.0% |
| !! | TATAAGAATTTATGGTCAAA+AGG | - | chr3_1:83190655-83190674 | Msa0381200:CDS | 20.0% |
| !! | TCTAAGAGAAATGTAGTTTT+TGG | + | chr3_1:83189055-83189074 | None:intergenic | 25.0% |
| ! | CAGTTCGATTAAAAAATCTA+CGG | - | chr3_1:83189383-83189402 | Msa0381200:CDS | 25.0% |
| ! | TAAAAAATCTACGGTTACTA+CGG | - | chr3_1:83189392-83189411 | Msa0381200:CDS | 25.0% |
| !!! | GGTTTTAAAAATGAGTACAA+TGG | - | chr3_1:83189500-83189519 | Msa0381200:CDS | 25.0% |
| !!! | GTTGATAAAGAATCAAGTTT+TGG | - | chr3_1:83189662-83189681 | Msa0381200:CDS | 25.0% |
| ! | AAATCACATTATAGAAACCA+TGG | + | chr3_1:83190601-83190620 | None:intergenic | 25.0% |
| ! | GTTGCAACTATAAGAATTTA+TGG | - | chr3_1:83190647-83190666 | Msa0381200:CDS | 25.0% |
| !! | TCTAAGAGAAATGTAGTTTT+TGG | + | chr3_1:83189055-83189074 | None:intergenic | 25.0% |
| ! | CAGTTCGATTAAAAAATCTA+CGG | - | chr3_1:83189383-83189402 | Msa0381200:CDS | 25.0% |
| ! | TAAAAAATCTACGGTTACTA+CGG | - | chr3_1:83189392-83189411 | Msa0381200:CDS | 25.0% |
| !!! | GGTTTTAAAAATGAGTACAA+TGG | - | chr3_1:83189500-83189519 | Msa0381200:CDS | 25.0% |
| !!! | GTTGATAAAGAATCAAGTTT+TGG | - | chr3_1:83189662-83189681 | Msa0381200:CDS | 25.0% |
| ! | AAATCACATTATAGAAACCA+TGG | + | chr3_1:83190601-83190620 | None:intergenic | 25.0% |
| ! | GTTGCAACTATAAGAATTTA+TGG | - | chr3_1:83190647-83190666 | Msa0381200:CDS | 25.0% |
| !!! | ATGTAGTTTTTGGCATTGTT+AGG | + | chr3_1:83189045-83189064 | None:intergenic | 30.0% |
| ! | ATCATCAGAAGTTGATTCAT+CGG | + | chr3_1:83189298-83189317 | None:intergenic | 30.0% |
| TGAACCAGAAGTTACTAATT+CGG | - | chr3_1:83189455-83189474 | Msa0381200:CDS | 30.0% | |
| ! | TATAATGGAGAAGAATTCAG+AGG | - | chr3_1:83189572-83189591 | Msa0381200:CDS | 30.0% |
| !! | AAAGGTATTCACTTGTTTCT+TGG | - | chr3_1:83189640-83189659 | Msa0381200:CDS | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+TGG | - | chr3_1:83189669-83189688 | Msa0381200:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCT+GGG | - | chr3_1:83189670-83189689 | Msa0381200:CDS | 30.0% |
| AGTAACAATGTTGTCAAAAG+AGG | - | chr3_1:83189714-83189733 | Msa0381200:CDS | 30.0% | |
| GTAACAATGTTGTCAAAAGA+GGG | - | chr3_1:83189715-83189734 | Msa0381200:CDS | 30.0% | |
| !!! | AGAGGGAGTTTATTTTATGA+TGG | - | chr3_1:83189732-83189751 | Msa0381200:CDS | 30.0% |
| GTTTCCAAAGCAAATAATGA+TGG | - | chr3_1:83189996-83190015 | Msa0381200:CDS | 30.0% | |
| AACACCATCATTATTTGCTT+TGG | + | chr3_1:83190003-83190022 | None:intergenic | 30.0% | |
| TGTTTGTTCTATTTGTGGTT+TGG | - | chr3_1:83190019-83190038 | Msa0381200:CDS | 30.0% | |
| GTTTGTTCTATTTGTGGTTT+GGG | - | chr3_1:83190020-83190039 | Msa0381200:CDS | 30.0% | |
| ! | CATATTTTGCAACAACAAGT+TGG | + | chr3_1:83190137-83190156 | None:intergenic | 30.0% |
| !!! | CACATTGTTGTTTGCATTTT+GGG | + | chr3_1:83190166-83190185 | None:intergenic | 30.0% |
| ! | TGTGAGCAAAATTTTCACTT+TGG | - | chr3_1:83190224-83190243 | Msa0381200:CDS | 30.0% |
| ! | TTTTCACTTTGGATGTGTAA+AGG | - | chr3_1:83190235-83190254 | Msa0381200:CDS | 30.0% |
| ! | AATTTGAGTAGTGATGATGA+TGG | - | chr3_1:83190410-83190429 | Msa0381200:CDS | 30.0% |
| AAAGAAGAGAAAGTTGAATG+TGG | - | chr3_1:83190463-83190482 | Msa0381200:CDS | 30.0% | |
| ! | CAGATAAAGCATCAATAGTT+GGG | + | chr3_1:83190517-83190536 | None:intergenic | 30.0% |
| !!! | AAAGATGTCGTTTTTAGTAG+AGG | - | chr3_1:83190551-83190570 | Msa0381200:CDS | 30.0% |
| GAAAATGGGTAAAGTCATTT+CGG | - | chr3_1:83190625-83190644 | Msa0381200:CDS | 30.0% | |
| TAGGTCTATTTAGGGATTTA+AGG | + | chr3_1:83190922-83190941 | None:intergenic | 30.0% | |
| AATCCCTAAATAGACCTATA+TGG | - | chr3_1:83190924-83190943 | Msa0381200:CDS | 30.0% | |
| !!! | ATGTAGTTTTTGGCATTGTT+AGG | + | chr3_1:83189045-83189064 | None:intergenic | 30.0% |
| ! | ATCATCAGAAGTTGATTCAT+CGG | + | chr3_1:83189298-83189317 | None:intergenic | 30.0% |
| TGAACCAGAAGTTACTAATT+CGG | - | chr3_1:83189455-83189474 | Msa0381200:CDS | 30.0% | |
| ! | TATAATGGAGAAGAATTCAG+AGG | - | chr3_1:83189572-83189591 | Msa0381200:CDS | 30.0% |
| !! | AAAGGTATTCACTTGTTTCT+TGG | - | chr3_1:83189640-83189659 | Msa0381200:CDS | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+TGG | - | chr3_1:83189669-83189688 | Msa0381200:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCT+GGG | - | chr3_1:83189670-83189689 | Msa0381200:CDS | 30.0% |
| AGTAACAATGTTGTCAAAAG+AGG | - | chr3_1:83189714-83189733 | Msa0381200:CDS | 30.0% | |
| GTAACAATGTTGTCAAAAGA+GGG | - | chr3_1:83189715-83189734 | Msa0381200:CDS | 30.0% | |
| !!! | AGAGGGAGTTTATTTTATGA+TGG | - | chr3_1:83189732-83189751 | Msa0381200:CDS | 30.0% |
| GTTTCCAAAGCAAATAATGA+TGG | - | chr3_1:83189996-83190015 | Msa0381200:CDS | 30.0% | |
| AACACCATCATTATTTGCTT+TGG | + | chr3_1:83190003-83190022 | None:intergenic | 30.0% | |
| TGTTTGTTCTATTTGTGGTT+TGG | - | chr3_1:83190019-83190038 | Msa0381200:CDS | 30.0% | |
| GTTTGTTCTATTTGTGGTTT+GGG | - | chr3_1:83190020-83190039 | Msa0381200:CDS | 30.0% | |
| ! | CATATTTTGCAACAACAAGT+TGG | + | chr3_1:83190137-83190156 | None:intergenic | 30.0% |
| !!! | CACATTGTTGTTTGCATTTT+GGG | + | chr3_1:83190166-83190185 | None:intergenic | 30.0% |
| ! | TGTGAGCAAAATTTTCACTT+TGG | - | chr3_1:83190224-83190243 | Msa0381200:CDS | 30.0% |
| ! | TTTTCACTTTGGATGTGTAA+AGG | - | chr3_1:83190235-83190254 | Msa0381200:CDS | 30.0% |
| ! | AATTTGAGTAGTGATGATGA+TGG | - | chr3_1:83190410-83190429 | Msa0381200:CDS | 30.0% |
| AAAGAAGAGAAAGTTGAATG+TGG | - | chr3_1:83190463-83190482 | Msa0381200:CDS | 30.0% | |
| ! | CAGATAAAGCATCAATAGTT+GGG | + | chr3_1:83190517-83190536 | None:intergenic | 30.0% |
| !!! | AAAGATGTCGTTTTTAGTAG+AGG | - | chr3_1:83190551-83190570 | Msa0381200:CDS | 30.0% |
| GAAAATGGGTAAAGTCATTT+CGG | - | chr3_1:83190625-83190644 | Msa0381200:CDS | 30.0% | |
| TAGGTCTATTTAGGGATTTA+AGG | + | chr3_1:83190922-83190941 | None:intergenic | 30.0% | |
| AATCCCTAAATAGACCTATA+TGG | - | chr3_1:83190924-83190943 | Msa0381200:CDS | 30.0% | |
| TCAGGTTCTATGTTGAAATC+AGG | + | chr3_1:83189009-83189028 | None:intergenic | 35.0% | |
| ! | TTTTGGCATTGTTAGGTTCT+GGG | + | chr3_1:83189038-83189057 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTGTTAGGTTC+TGG | + | chr3_1:83189039-83189058 | None:intergenic | 35.0% |
| CAATTTCTTCGTCTCTGTTA+CGG | - | chr3_1:83189148-83189167 | Msa0381200:CDS | 35.0% | |
| GAGAAGAATTCAGAGGTTTA+CGG | - | chr3_1:83189579-83189598 | Msa0381200:CDS | 35.0% | |
| CGTGTTAATTTCACTATCAC+TGG | - | chr3_1:83189774-83189793 | Msa0381200:CDS | 35.0% | |
| TTTCACTATCACTGGATTTG+AGG | - | chr3_1:83189782-83189801 | Msa0381200:CDS | 35.0% | |
| ACTACTATCTTGTTGGAAGA+CGG | - | chr3_1:83189837-83189856 | Msa0381200:CDS | 35.0% | |
| GATGGTGTTTGTTCTATTTG+TGG | - | chr3_1:83190014-83190033 | Msa0381200:CDS | 35.0% | |
| !!! | GCACATTGTTGTTTGCATTT+TGG | + | chr3_1:83190167-83190186 | None:intergenic | 35.0% |
| TGTGTAAAGGCTACAAGATT+TGG | - | chr3_1:83190248-83190267 | Msa0381200:CDS | 35.0% | |
| AAGATTTGGATCTAGTCACA+TGG | - | chr3_1:83190262-83190281 | Msa0381200:CDS | 35.0% | |
| TGGAGAGCAATGTTAAAAAC+AGG | - | chr3_1:83190282-83190301 | Msa0381200:CDS | 35.0% | |
| GCAATGTTAAAAACAGGAAC+TGG | - | chr3_1:83190288-83190307 | Msa0381200:CDS | 35.0% | |
| TTCTGTCTGAAGAAGCTATT+AGG | - | chr3_1:83190341-83190360 | Msa0381200:CDS | 35.0% | |
| TCTGTCTGAAGAAGCTATTA+GGG | - | chr3_1:83190342-83190361 | Msa0381200:CDS | 35.0% | |
| GCTATTAGGGAAACCAATTA+AGG | - | chr3_1:83190355-83190374 | Msa0381200:CDS | 35.0% | |
| ! | CCAGATAAAGCATCAATAGT+TGG | + | chr3_1:83190518-83190537 | None:intergenic | 35.0% |
| CCAACTATTGATGCTTTATC+TGG | - | chr3_1:83190515-83190534 | Msa0381200:CDS | 35.0% | |
| CATAAACGCTTGAATTTCCA+TGG | - | chr3_1:83190581-83190600 | Msa0381200:CDS | 35.0% | |
| TTGTCTTCGATATTGTTCCT+TGG | + | chr3_1:83190705-83190724 | None:intergenic | 35.0% | |
| AAGGAACAATATCGAAGACA+AGG | - | chr3_1:83190704-83190723 | Msa0381200:CDS | 35.0% | |
| AAATTGACACTTGTCTTCAC+GGG | + | chr3_1:83190858-83190877 | None:intergenic | 35.0% | |
| CAAATTGACACTTGTCTTCA+CGG | + | chr3_1:83190859-83190878 | None:intergenic | 35.0% | |
| AGGCCATATAGGTCTATTTA+GGG | + | chr3_1:83190930-83190949 | None:intergenic | 35.0% | |
| AAGGCCATATAGGTCTATTT+AGG | + | chr3_1:83190931-83190950 | None:intergenic | 35.0% | |
| TCAGGTTCTATGTTGAAATC+AGG | + | chr3_1:83189009-83189028 | None:intergenic | 35.0% | |
| ! | TTTTGGCATTGTTAGGTTCT+GGG | + | chr3_1:83189038-83189057 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTGTTAGGTTC+TGG | + | chr3_1:83189039-83189058 | None:intergenic | 35.0% |
| CAATTTCTTCGTCTCTGTTA+CGG | - | chr3_1:83189148-83189167 | Msa0381200:CDS | 35.0% | |
| GAGAAGAATTCAGAGGTTTA+CGG | - | chr3_1:83189579-83189598 | Msa0381200:CDS | 35.0% | |
| CGTGTTAATTTCACTATCAC+TGG | - | chr3_1:83189774-83189793 | Msa0381200:CDS | 35.0% | |
| TTTCACTATCACTGGATTTG+AGG | - | chr3_1:83189782-83189801 | Msa0381200:CDS | 35.0% | |
| ACTACTATCTTGTTGGAAGA+CGG | - | chr3_1:83189837-83189856 | Msa0381200:CDS | 35.0% | |
| GATGGTGTTTGTTCTATTTG+TGG | - | chr3_1:83190014-83190033 | Msa0381200:CDS | 35.0% | |
| !!! | GCACATTGTTGTTTGCATTT+TGG | + | chr3_1:83190167-83190186 | None:intergenic | 35.0% |
| TGTGTAAAGGCTACAAGATT+TGG | - | chr3_1:83190248-83190267 | Msa0381200:CDS | 35.0% | |
| AAGATTTGGATCTAGTCACA+TGG | - | chr3_1:83190262-83190281 | Msa0381200:CDS | 35.0% | |
| TGGAGAGCAATGTTAAAAAC+AGG | - | chr3_1:83190282-83190301 | Msa0381200:CDS | 35.0% | |
| GCAATGTTAAAAACAGGAAC+TGG | - | chr3_1:83190288-83190307 | Msa0381200:CDS | 35.0% | |
| TTCTGTCTGAAGAAGCTATT+AGG | - | chr3_1:83190341-83190360 | Msa0381200:CDS | 35.0% | |
| TCTGTCTGAAGAAGCTATTA+GGG | - | chr3_1:83190342-83190361 | Msa0381200:CDS | 35.0% | |
| GCTATTAGGGAAACCAATTA+AGG | - | chr3_1:83190355-83190374 | Msa0381200:CDS | 35.0% | |
| ! | CCAGATAAAGCATCAATAGT+TGG | + | chr3_1:83190518-83190537 | None:intergenic | 35.0% |
| CCAACTATTGATGCTTTATC+TGG | - | chr3_1:83190515-83190534 | Msa0381200:CDS | 35.0% | |
| CATAAACGCTTGAATTTCCA+TGG | - | chr3_1:83190581-83190600 | Msa0381200:CDS | 35.0% | |
| TTGTCTTCGATATTGTTCCT+TGG | + | chr3_1:83190705-83190724 | None:intergenic | 35.0% | |
| AAGGAACAATATCGAAGACA+AGG | - | chr3_1:83190704-83190723 | Msa0381200:CDS | 35.0% | |
| AAATTGACACTTGTCTTCAC+GGG | + | chr3_1:83190858-83190877 | None:intergenic | 35.0% | |
| CAAATTGACACTTGTCTTCA+CGG | + | chr3_1:83190859-83190878 | None:intergenic | 35.0% | |
| AGGCCATATAGGTCTATTTA+GGG | + | chr3_1:83190930-83190949 | None:intergenic | 35.0% | |
| AAGGCCATATAGGTCTATTT+AGG | + | chr3_1:83190931-83190950 | None:intergenic | 35.0% | |
| TCTATGTTGAAATCAGGAGG+TGG | + | chr3_1:83189003-83189022 | None:intergenic | 40.0% | |
| GGTTCTATGTTGAAATCAGG+AGG | + | chr3_1:83189006-83189025 | None:intergenic | 40.0% | |
| AGAGTTGCATTGAAGAAGGA+GGG | - | chr3_1:83189085-83189104 | Msa0381200:CDS | 40.0% | |
| AAAGAGATTGAGAGAATCCG+AGG | - | chr3_1:83189176-83189195 | Msa0381200:CDS | 40.0% | |
| TTCTGAATCAACTTCTGACG+AGG | - | chr3_1:83189341-83189360 | Msa0381200:CDS | 40.0% | |
| ! | TACTACGGTGTCAACATCAA+TGG | - | chr3_1:83189407-83189426 | Msa0381200:CDS | 40.0% |
| ACCAGAAGTTACTAATTCGG+TGG | - | chr3_1:83189458-83189477 | Msa0381200:CDS | 40.0% | |
| CCAGAAGTTACTAATTCGGT+GGG | - | chr3_1:83189459-83189478 | Msa0381200:CDS | 40.0% | |
| GAGAAGAATTCAGACGATTG+TGG | - | chr3_1:83189522-83189541 | Msa0381200:CDS | 40.0% | |
| ! | TATCAAAGAGGGAAGGTACA+AGG | - | chr3_1:83189616-83189635 | Msa0381200:CDS | 40.0% |
| ! | ATCAAAGAGGGAAGGTACAA+GGG | - | chr3_1:83189617-83189636 | Msa0381200:CDS | 40.0% |
| ACCATCCACTACTATCTTGT+TGG | - | chr3_1:83189830-83189849 | Msa0381200:CDS | 40.0% | |
| ! | TCCAACAAGATAGTAGTGGA+TGG | + | chr3_1:83189834-83189853 | None:intergenic | 40.0% |
| GTCTTCCAACAAGATAGTAG+TGG | + | chr3_1:83189838-83189857 | None:intergenic | 40.0% | |
| GTCATTGTTGGAATGTCAGA+GGG | - | chr3_1:83189863-83189882 | Msa0381200:CDS | 40.0% | |
| TCAGAGTTCGCATGATGAAA+AGG | - | chr3_1:83189890-83189909 | Msa0381200:CDS | 40.0% | |
| CAGAGTTCGCATGATGAAAA+GGG | - | chr3_1:83189891-83189910 | Msa0381200:CDS | 40.0% | |
| AGAGTTCGCATGATGAAAAG+GGG | - | chr3_1:83189892-83189911 | Msa0381200:CDS | 40.0% | |
| TGAAAAGGGGAATCATTGTG+TGG | - | chr3_1:83189905-83189924 | Msa0381200:CDS | 40.0% | |
| ! | TGTTCTATTTGTGGTTTGGG+AGG | - | chr3_1:83190023-83190042 | Msa0381200:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+CGG | - | chr3_1:83190308-83190327 | Msa0381200:CDS | 40.0% |
| !! | TTGAGTAGTGATGATGATGG+CGG | - | chr3_1:83190413-83190432 | Msa0381200:CDS | 40.0% |
| !!! | CAAAAGCGTTTGGTTTTGCT+AGG | - | chr3_1:83190828-83190847 | Msa0381200:CDS | 40.0% |
| CAAGCAATACAAGGCCATAT+AGG | + | chr3_1:83190941-83190960 | None:intergenic | 40.0% | |
| TCTATGTTGAAATCAGGAGG+TGG | + | chr3_1:83189003-83189022 | None:intergenic | 40.0% | |
| GGTTCTATGTTGAAATCAGG+AGG | + | chr3_1:83189006-83189025 | None:intergenic | 40.0% | |
| AGAGTTGCATTGAAGAAGGA+GGG | - | chr3_1:83189085-83189104 | Msa0381200:CDS | 40.0% | |
| AAAGAGATTGAGAGAATCCG+AGG | - | chr3_1:83189176-83189195 | Msa0381200:CDS | 40.0% | |
| TTCTGAATCAACTTCTGACG+AGG | - | chr3_1:83189341-83189360 | Msa0381200:CDS | 40.0% | |
| ! | TACTACGGTGTCAACATCAA+TGG | - | chr3_1:83189407-83189426 | Msa0381200:CDS | 40.0% |
| ACCAGAAGTTACTAATTCGG+TGG | - | chr3_1:83189458-83189477 | Msa0381200:CDS | 40.0% | |
| CCAGAAGTTACTAATTCGGT+GGG | - | chr3_1:83189459-83189478 | Msa0381200:CDS | 40.0% | |
| GAGAAGAATTCAGACGATTG+TGG | - | chr3_1:83189522-83189541 | Msa0381200:CDS | 40.0% | |
| ! | TATCAAAGAGGGAAGGTACA+AGG | - | chr3_1:83189616-83189635 | Msa0381200:CDS | 40.0% |
| ! | ATCAAAGAGGGAAGGTACAA+GGG | - | chr3_1:83189617-83189636 | Msa0381200:CDS | 40.0% |
| ACCATCCACTACTATCTTGT+TGG | - | chr3_1:83189830-83189849 | Msa0381200:CDS | 40.0% | |
| ! | TCCAACAAGATAGTAGTGGA+TGG | + | chr3_1:83189834-83189853 | None:intergenic | 40.0% |
| GTCTTCCAACAAGATAGTAG+TGG | + | chr3_1:83189838-83189857 | None:intergenic | 40.0% | |
| GTCATTGTTGGAATGTCAGA+GGG | - | chr3_1:83189863-83189882 | Msa0381200:CDS | 40.0% | |
| TCAGAGTTCGCATGATGAAA+AGG | - | chr3_1:83189890-83189909 | Msa0381200:CDS | 40.0% | |
| CAGAGTTCGCATGATGAAAA+GGG | - | chr3_1:83189891-83189910 | Msa0381200:CDS | 40.0% | |
| AGAGTTCGCATGATGAAAAG+GGG | - | chr3_1:83189892-83189911 | Msa0381200:CDS | 40.0% | |
| TGAAAAGGGGAATCATTGTG+TGG | - | chr3_1:83189905-83189924 | Msa0381200:CDS | 40.0% | |
| ! | TGTTCTATTTGTGGTTTGGG+AGG | - | chr3_1:83190023-83190042 | Msa0381200:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+CGG | - | chr3_1:83190308-83190327 | Msa0381200:CDS | 40.0% |
| !! | TTGAGTAGTGATGATGATGG+CGG | - | chr3_1:83190413-83190432 | Msa0381200:CDS | 40.0% |
| !!! | CAAAAGCGTTTGGTTTTGCT+AGG | - | chr3_1:83190828-83190847 | Msa0381200:CDS | 40.0% |
| CAAGCAATACAAGGCCATAT+AGG | + | chr3_1:83190941-83190960 | None:intergenic | 40.0% | |
| TCTTCAATGCAACTCTCGCA+GGG | + | chr3_1:83189081-83189100 | None:intergenic | 45.0% | |
| TTCTTCAATGCAACTCTCGC+AGG | + | chr3_1:83189082-83189101 | None:intergenic | 45.0% | |
| TGCGAGAGTTGCATTGAAGA+AGG | - | chr3_1:83189081-83189100 | Msa0381200:CDS | 45.0% | |
| GAGAGTTGCATTGAAGAAGG+AGG | - | chr3_1:83189084-83189103 | Msa0381200:CDS | 45.0% | |
| GACGAAGAAATTGCTGCTAC+TGG | + | chr3_1:83189141-83189160 | None:intergenic | 45.0% | |
| !! | TGTTGCTTCTGCTGTTTCCT+CGG | + | chr3_1:83189196-83189215 | None:intergenic | 45.0% |
| CCCACCGAATTAGTAACTTC+TGG | + | chr3_1:83189462-83189481 | None:intergenic | 45.0% | |
| ! | GTTACTAATTCGGTGGGTAG+TGG | - | chr3_1:83189465-83189484 | Msa0381200:CDS | 45.0% |
| ! | GGGTAGTGGTAAAAGAGGAA+AGG | - | chr3_1:83189479-83189498 | Msa0381200:CDS | 45.0% |
| TCAGACGATTGTGGTAGAAG+AGG | - | chr3_1:83189531-83189550 | Msa0381200:CDS | 45.0% | |
| CAGACGATTGTGGTAGAAGA+GGG | - | chr3_1:83189532-83189551 | Msa0381200:CDS | 45.0% | |
| TCAGAGGTTTACGGTAAGAG+AGG | - | chr3_1:83189588-83189607 | Msa0381200:CDS | 45.0% | |
| CAGAGGTTTACGGTAAGAGA+GGG | - | chr3_1:83189589-83189608 | Msa0381200:CDS | 45.0% | |
| !! | AGAGAGGGAAGGTATCAAAG+AGG | - | chr3_1:83189604-83189623 | Msa0381200:CDS | 45.0% |
| !! | GAGAGGGAAGGTATCAAAGA+GGG | - | chr3_1:83189605-83189624 | Msa0381200:CDS | 45.0% |
| !! | GGGACTACTGTGTTTTGTTG+TGG | - | chr3_1:83189690-83189709 | Msa0381200:CDS | 45.0% |
| CTATCTTGTTGGAAGACGGA+AGG | - | chr3_1:83189841-83189860 | Msa0381200:CDS | 45.0% | |
| GGTCATTGTTGGAATGTCAG+AGG | - | chr3_1:83189862-83189881 | Msa0381200:CDS | 45.0% | |
| !! | TCCGAAGCAAGTTCTGAAGT+AGG | - | chr3_1:83189963-83189982 | Msa0381200:CDS | 45.0% |
| ! | CCCTACTTCAGAACTTGCTT+CGG | + | chr3_1:83189967-83189986 | None:intergenic | 45.0% |
| !! | CCGAAGCAAGTTCTGAAGTA+GGG | - | chr3_1:83189964-83189983 | Msa0381200:CDS | 45.0% |
| CTTAGGTCTCGATCAAGTTC+CGG | - | chr3_1:83190094-83190113 | Msa0381200:CDS | 45.0% | |
| ATCAAGTTCCGGATGGTGAT+TGG | - | chr3_1:83190105-83190124 | Msa0381200:CDS | 45.0% | |
| GGACAAAACCAATCACCATC+CGG | + | chr3_1:83190116-83190135 | None:intergenic | 45.0% | |
| !! | GGTTTTGCAGTGTAGTTTGC+GGG | - | chr3_1:83190309-83190328 | Msa0381200:CDS | 45.0% |
| GGTAGCCACGAAAACTATCT+CGG | + | chr3_1:83190684-83190703 | None:intergenic | 45.0% | |
| ! | GATAGTTTTCGTGGCTACCA+AGG | - | chr3_1:83190685-83190704 | Msa0381200:CDS | 45.0% |
| GAGAAACAGTTGACACGCTT+AGG | - | chr3_1:83190755-83190774 | Msa0381200:CDS | 45.0% | |
| ACGCTTAGGAGTTGAAAGCT+TGG | - | chr3_1:83190769-83190788 | Msa0381200:CDS | 45.0% | |
| TCTTCAATGCAACTCTCGCA+GGG | + | chr3_1:83189081-83189100 | None:intergenic | 45.0% | |
| TTCTTCAATGCAACTCTCGC+AGG | + | chr3_1:83189082-83189101 | None:intergenic | 45.0% | |
| TGCGAGAGTTGCATTGAAGA+AGG | - | chr3_1:83189081-83189100 | Msa0381200:CDS | 45.0% | |
| GAGAGTTGCATTGAAGAAGG+AGG | - | chr3_1:83189084-83189103 | Msa0381200:CDS | 45.0% | |
| GACGAAGAAATTGCTGCTAC+TGG | + | chr3_1:83189141-83189160 | None:intergenic | 45.0% | |
| !! | TGTTGCTTCTGCTGTTTCCT+CGG | + | chr3_1:83189196-83189215 | None:intergenic | 45.0% |
| CCCACCGAATTAGTAACTTC+TGG | + | chr3_1:83189462-83189481 | None:intergenic | 45.0% | |
| ! | GTTACTAATTCGGTGGGTAG+TGG | - | chr3_1:83189465-83189484 | Msa0381200:CDS | 45.0% |
| ! | GGGTAGTGGTAAAAGAGGAA+AGG | - | chr3_1:83189479-83189498 | Msa0381200:CDS | 45.0% |
| TCAGACGATTGTGGTAGAAG+AGG | - | chr3_1:83189531-83189550 | Msa0381200:CDS | 45.0% | |
| CAGACGATTGTGGTAGAAGA+GGG | - | chr3_1:83189532-83189551 | Msa0381200:CDS | 45.0% | |
| TCAGAGGTTTACGGTAAGAG+AGG | - | chr3_1:83189588-83189607 | Msa0381200:CDS | 45.0% | |
| CAGAGGTTTACGGTAAGAGA+GGG | - | chr3_1:83189589-83189608 | Msa0381200:CDS | 45.0% | |
| !! | AGAGAGGGAAGGTATCAAAG+AGG | - | chr3_1:83189604-83189623 | Msa0381200:CDS | 45.0% |
| !! | GAGAGGGAAGGTATCAAAGA+GGG | - | chr3_1:83189605-83189624 | Msa0381200:CDS | 45.0% |
| !! | GGGACTACTGTGTTTTGTTG+TGG | - | chr3_1:83189690-83189709 | Msa0381200:CDS | 45.0% |
| CTATCTTGTTGGAAGACGGA+AGG | - | chr3_1:83189841-83189860 | Msa0381200:CDS | 45.0% | |
| GGTCATTGTTGGAATGTCAG+AGG | - | chr3_1:83189862-83189881 | Msa0381200:CDS | 45.0% | |
| !! | TCCGAAGCAAGTTCTGAAGT+AGG | - | chr3_1:83189963-83189982 | Msa0381200:CDS | 45.0% |
| ! | CCCTACTTCAGAACTTGCTT+CGG | + | chr3_1:83189967-83189986 | None:intergenic | 45.0% |
| !! | CCGAAGCAAGTTCTGAAGTA+GGG | - | chr3_1:83189964-83189983 | Msa0381200:CDS | 45.0% |
| CTTAGGTCTCGATCAAGTTC+CGG | - | chr3_1:83190094-83190113 | Msa0381200:CDS | 45.0% | |
| ATCAAGTTCCGGATGGTGAT+TGG | - | chr3_1:83190105-83190124 | Msa0381200:CDS | 45.0% | |
| GGACAAAACCAATCACCATC+CGG | + | chr3_1:83190116-83190135 | None:intergenic | 45.0% | |
| !! | GGTTTTGCAGTGTAGTTTGC+GGG | - | chr3_1:83190309-83190328 | Msa0381200:CDS | 45.0% |
| GGTAGCCACGAAAACTATCT+CGG | + | chr3_1:83190684-83190703 | None:intergenic | 45.0% | |
| ! | GATAGTTTTCGTGGCTACCA+AGG | - | chr3_1:83190685-83190704 | Msa0381200:CDS | 45.0% |
| GAGAAACAGTTGACACGCTT+AGG | - | chr3_1:83190755-83190774 | Msa0381200:CDS | 45.0% | |
| ACGCTTAGGAGTTGAAAGCT+TGG | - | chr3_1:83190769-83190788 | Msa0381200:CDS | 45.0% | |
| !! | TTAGGTTCTGGGCAGTTCTC+AGG | + | chr3_1:83189027-83189046 | None:intergenic | 50.0% |
| !! | TGCAGTCGAAGGGTGTTTGA+GGG | + | chr3_1:83189115-83189134 | None:intergenic | 50.0% |
| AAAGCGACCAAGAGAATCCG+AGG | - | chr3_1:83189242-83189261 | Msa0381200:CDS | 50.0% | |
| ! | TGCTATTGCTGCTGCTTCCT+CGG | + | chr3_1:83189262-83189281 | None:intergenic | 50.0% |
| ! | TCGGTGGGTAGTGGTAAAAG+AGG | - | chr3_1:83189474-83189493 | Msa0381200:CDS | 50.0% |
| GGTTTACGGTAAGAGAGGGA+AGG | - | chr3_1:83189593-83189612 | Msa0381200:CDS | 50.0% | |
| !! | GGGAAGGTATCAAAGAGGGA+AGG | - | chr3_1:83189609-83189628 | Msa0381200:CDS | 50.0% |
| ! | AGAGGGAAGGTACAAGGGAA+AGG | - | chr3_1:83189622-83189641 | Msa0381200:CDS | 50.0% |
| ! | ACTGGATTTGAGGCTCATGC+TGG | - | chr3_1:83189792-83189811 | Msa0381200:CDS | 50.0% |
| ! | AGGCTCATGCTGGTTGTACA+AGG | - | chr3_1:83189802-83189821 | Msa0381200:CDS | 50.0% |
| GGAAGACGGAAGGTCATTGT+TGG | - | chr3_1:83189851-83189870 | Msa0381200:CDS | 50.0% | |
| CAAACGAGGTGGAATGCAGA+AGG | + | chr3_1:83190074-83190093 | None:intergenic | 50.0% | |
| GCATTCCACCTCGTTTGCTT+AGG | - | chr3_1:83190077-83190096 | Msa0381200:CDS | 50.0% | |
| GATCGAGACCTAAGCAAACG+AGG | + | chr3_1:83190088-83190107 | None:intergenic | 50.0% | |
| ! | GGTTGCCGAGATAGTTTTCG+TGG | - | chr3_1:83190676-83190695 | Msa0381200:CDS | 50.0% |
| !!! | CTTGGTTTTGCATTCCTCCG+AGG | - | chr3_1:83190787-83190806 | Msa0381200:CDS | 50.0% |
| CCACGTGTCTATAGCATCCT+CGG | + | chr3_1:83190807-83190826 | None:intergenic | 50.0% | |
| !! | GACACGTGGACAAAAGCGTT+TGG | - | chr3_1:83190818-83190837 | Msa0381200:CDS | 50.0% |
| !! | TTAGGTTCTGGGCAGTTCTC+AGG | + | chr3_1:83189027-83189046 | None:intergenic | 50.0% |
| !! | TGCAGTCGAAGGGTGTTTGA+GGG | + | chr3_1:83189115-83189134 | None:intergenic | 50.0% |
| AAAGCGACCAAGAGAATCCG+AGG | - | chr3_1:83189242-83189261 | Msa0381200:CDS | 50.0% | |
| ! | TGCTATTGCTGCTGCTTCCT+CGG | + | chr3_1:83189262-83189281 | None:intergenic | 50.0% |
| ! | TCGGTGGGTAGTGGTAAAAG+AGG | - | chr3_1:83189474-83189493 | Msa0381200:CDS | 50.0% |
| GGTTTACGGTAAGAGAGGGA+AGG | - | chr3_1:83189593-83189612 | Msa0381200:CDS | 50.0% | |
| !! | GGGAAGGTATCAAAGAGGGA+AGG | - | chr3_1:83189609-83189628 | Msa0381200:CDS | 50.0% |
| ! | AGAGGGAAGGTACAAGGGAA+AGG | - | chr3_1:83189622-83189641 | Msa0381200:CDS | 50.0% |
| ! | ACTGGATTTGAGGCTCATGC+TGG | - | chr3_1:83189792-83189811 | Msa0381200:CDS | 50.0% |
| ! | AGGCTCATGCTGGTTGTACA+AGG | - | chr3_1:83189802-83189821 | Msa0381200:CDS | 50.0% |
| GGAAGACGGAAGGTCATTGT+TGG | - | chr3_1:83189851-83189870 | Msa0381200:CDS | 50.0% | |
| CAAACGAGGTGGAATGCAGA+AGG | + | chr3_1:83190074-83190093 | None:intergenic | 50.0% | |
| GCATTCCACCTCGTTTGCTT+AGG | - | chr3_1:83190077-83190096 | Msa0381200:CDS | 50.0% | |
| GATCGAGACCTAAGCAAACG+AGG | + | chr3_1:83190088-83190107 | None:intergenic | 50.0% | |
| ! | GGTTGCCGAGATAGTTTTCG+TGG | - | chr3_1:83190676-83190695 | Msa0381200:CDS | 50.0% |
| !!! | CTTGGTTTTGCATTCCTCCG+AGG | - | chr3_1:83190787-83190806 | Msa0381200:CDS | 50.0% |
| CCACGTGTCTATAGCATCCT+CGG | + | chr3_1:83190807-83190826 | None:intergenic | 50.0% | |
| !! | GACACGTGGACAAAAGCGTT+TGG | - | chr3_1:83190818-83190837 | Msa0381200:CDS | 50.0% |
| !! | CTGCAGTCGAAGGGTGTTTG+AGG | + | chr3_1:83189116-83189135 | None:intergenic | 55.0% |
| !! | CTACTGGTGCTGCAGTCGAA+GGG | + | chr3_1:83189125-83189144 | None:intergenic | 55.0% |
| GCTGCTTCCTCGGATTCTCT+TGG | + | chr3_1:83189252-83189271 | None:intergenic | 55.0% | |
| CGAGACCTAAGCAAACGAGG+TGG | + | chr3_1:83190085-83190104 | None:intergenic | 55.0% | |
| GGTCTCGATCAAGTTCCGGA+TGG | - | chr3_1:83190098-83190117 | Msa0381200:CDS | 55.0% | |
| CGTGTCTATAGCATCCTCGG+AGG | + | chr3_1:83190804-83190823 | None:intergenic | 55.0% | |
| CCGAGGATGCTATAGACACG+TGG | - | chr3_1:83190804-83190823 | Msa0381200:CDS | 55.0% | |
| !! | CTGCAGTCGAAGGGTGTTTG+AGG | + | chr3_1:83189116-83189135 | None:intergenic | 55.0% |
| !! | CTACTGGTGCTGCAGTCGAA+GGG | + | chr3_1:83189125-83189144 | None:intergenic | 55.0% |
| GCTGCTTCCTCGGATTCTCT+TGG | + | chr3_1:83189252-83189271 | None:intergenic | 55.0% | |
| CGAGACCTAAGCAAACGAGG+TGG | + | chr3_1:83190085-83190104 | None:intergenic | 55.0% | |
| GGTCTCGATCAAGTTCCGGA+TGG | - | chr3_1:83190098-83190117 | Msa0381200:CDS | 55.0% | |
| CGTGTCTATAGCATCCTCGG+AGG | + | chr3_1:83190804-83190823 | None:intergenic | 55.0% | |
| CCGAGGATGCTATAGACACG+TGG | - | chr3_1:83190804-83190823 | Msa0381200:CDS | 55.0% | |
| !! | GCTACTGGTGCTGCAGTCGA+AGG | + | chr3_1:83189126-83189145 | None:intergenic | 60.0% |
| !! | GCTACTGGTGCTGCAGTCGA+AGG | + | chr3_1:83189126-83189145 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 83188985 | 83190961 | 83188985 | ID=Msa0381200;Name=Msa0381200 |
| chr3_1 | mRNA | 83188985 | 83190961 | 83188985 | ID=Msa0381200-mRNA-1;Parent=Msa0381200;Name=Msa0381200-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|658 |
| chr3_1 | exon | 83188985 | 83190961 | 83188985 | ID=Msa0381200-mRNA-1:exon:21377;Parent=Msa0381200-mRNA-1 |
| chr3_1 | CDS | 83188985 | 83190961 | 83188985 | ID=Msa0381200-mRNA-1:cds;Parent=Msa0381200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
