AlfalfaGEDB | Msa0381200

M. sativa cultivar zhongmu-4 / Msa0381200

KEGG: -
GO: GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
PFAM: PF16135.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381200	XP_013461784.1	63.164	809	138	8	1	658	1	800	0.0	947

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381200	sp\|F4IXE7\|IDM1_ARATH	31.364	440	266	8	222	655	620	1029	1.95e-63	231

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381200	A0A072V1D9	63.164	809	138	8	1	658	1	800	0.0	947

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TFs/TRs:

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Gene ID	Type	Classification
Msa0381200	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0381200	Msa0431040	0.975829	1.122631e-140	-8.615850e-47
Msa0381200	Msa1413860	0.999334	6.412501e-304	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381200	MtrunA17_Chr3g0134811	63.164	809	138	8	1	658	1	800	0.0	947
Msa0381200	MtrunA17_Chr7g0270101	71.160	638	138	3	44	658	182	796	0.0	873
Msa0381200	MtrunA17_Chr7g0270101	66.250	80	24	1	22	101	74	150	5.59e-19	91.7
Msa0381200	MtrunA17_Chr3g0134821	65.954	608	134	3	51	658	307	841	0.0	761
Msa0381200	MtrunA17_Chr3g0134821	34.783	253	94	7	1	190	1	245	5.62e-21	98.2
Msa0381200	MtrunA17_Chr5g0407211	72.955	440	101	5	223	658	3	428	0.0	665
Msa0381200	MtrunA17_Chr5g0407251	72.500	440	103	5	223	658	3	428	0.0	659
Msa0381200	MtrunA17_Chr3g0134851	47.360	606	166	10	57	651	3	466	6.89e-147	434
Msa0381200	MtrunA17_Chr5g0430361	40.826	436	225	8	222	651	651	1059	6.94e-106	345
Msa0381200	MtrunA17_Chr3g0105291	41.149	435	221	9	222	649	602	1008	1.67e-104	342

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381200	AT5G58610.4	40.181	443	237	7	211	649	359	777	1.40e-101	330
Msa0381200	AT5G58610.8	40.181	443	237	7	211	649	590	1008	1.32e-99	328
Msa0381200	AT5G58610.2	40.181	443	237	7	211	649	590	1008	1.32e-99	328
Msa0381200	AT5G58610.3	40.181	443	237	7	211	649	590	1008	1.76e-99	328
Msa0381200	AT5G58610.5	40.181	443	237	7	211	649	581	999	3.16e-99	328
Msa0381200	AT5G58610.7	40.181	443	237	7	211	649	581	999	4.86e-99	327
Msa0381200	AT5G58610.6	38.095	441	223	7	211	649	581	973	7.20e-88	296
Msa0381200	AT5G58610.1	38.095	441	223	7	211	649	581	973	1.15e-87	296
Msa0381200	AT5G58610.10	39.642	391	208	7	211	597	590	956	2.83e-84	285
Msa0381200	AT5G58610.9	39.642	391	208	7	211	597	581	947	5.12e-84	284

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Find 118 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAGAAAGTTGAATG+TGG	0.626130	3_1:-83189461	Msa0381200:CDS
AAAGAGATTGAGAGAATCCG+AGG	0.612293	3_1:-83190748	Msa0381200:CDS
AAAGCGACCAAGAGAATCCG+AGG	0.592053	3_1:-83190682	Msa0381200:CDS
AAAGGTATTCACTTGTTTCT+TGG	0.322354	3_1:-83190284	Msa0381200:CDS
AAATCACATTATAGAAACCA+TGG	0.572412	3_1:+83189326	None:intergenic
AAATTGACACTTGTCTTCAC+GGG	0.497364	3_1:+83189069	None:intergenic
AACACCATCATTATTTGCTT+TGG	0.281757	3_1:+83189924	None:intergenic
AACTACCATCAAGCAATACA+AGG	0.564139	3_1:+83188977	None:intergenic
AAGATTTGGATCTAGTCACA+TGG	0.660288	3_1:-83189662	Msa0381200:CDS
AAGGAACAATATCGAAGACA+AGG	0.663403	3_1:-83189220	Msa0381200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAACCAGAAGTTACTAATT+CGG	-	chr3_1:83189455-83189474	Msa0381200:CDS	30.0%
AGTAACAATGTTGTCAAAAG+AGG	-	chr3_1:83189714-83189733	Msa0381200:CDS	30.0%
GTAACAATGTTGTCAAAAGA+GGG	-	chr3_1:83189715-83189734	Msa0381200:CDS	30.0%
GTTTCCAAAGCAAATAATGA+TGG	-	chr3_1:83189996-83190015	Msa0381200:CDS	30.0%
AACACCATCATTATTTGCTT+TGG	+	chr3_1:83190003-83190022	None:intergenic	30.0%
TGTTTGTTCTATTTGTGGTT+TGG	-	chr3_1:83190019-83190038	Msa0381200:CDS	30.0%
GTTTGTTCTATTTGTGGTTT+GGG	-	chr3_1:83190020-83190039	Msa0381200:CDS	30.0%
AAAGAAGAGAAAGTTGAATG+TGG	-	chr3_1:83190463-83190482	Msa0381200:CDS	30.0%
GAAAATGGGTAAAGTCATTT+CGG	-	chr3_1:83190625-83190644	Msa0381200:CDS	30.0%
TAGGTCTATTTAGGGATTTA+AGG	+	chr3_1:83190922-83190941	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	83188985	83190961	83188985	ID=Msa0381200;Name=Msa0381200
chr3_1	mRNA	83188985	83190961	83188985	ID=Msa0381200-mRNA-1;Parent=Msa0381200;Name=Msa0381200-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|658
chr3_1	exon	83188985	83190961	83188985	ID=Msa0381200-mRNA-1:exon:21377;Parent=Msa0381200-mRNA-1
chr3_1	CDS	83188985	83190961	83188985	ID=Msa0381200-mRNA-1:cds;Parent=Msa0381200-mRNA-1

Gene Sequence

>Msa0381200

ATGGATTCATGTTCACCACCTCCTGATTTCAACATAGAACCTGAGAACTGCCCAGAACCTAACAATGCCAAAAACTACATTTCTCTTAGAAAACCCTGCGAGAGTTGCATTGAAGAAGGAGGGTGTTCCCTCAAACACCCTTCGACTGCAGCACCAGTAGCAGCAATTTCTTCGTCTCTGTTACGGTTGAAAAAGAGATTGAGAGAATCCGAGGAAACAGCAGAAGCAACAATTTCTTTGTCTCTATCACAGTCGAAAAAGCGACCAAGAGAATCCGAGGAAGCAGCAGCAATAGCAATTTCTTCAGAATCCGATGAATCAACTTCTGATGATGATTCTGAAGTCTCTAGTTGCAGTTCTGAATCAACTTCTGACGAGGATTTTGAAGTCTCGAGTTTCAGTTCGATTAAAAAATCTACGGTTACTACGGTGTCAACATCAATGGAAAATGAGAAGCGTGTGACTCGATCTGAACCAGAAGTTACTAATTCGGTGGGTAGTGGTAAAAGAGGAAAGGTTTTAAAAATGAGTACAATGGAGAAGAATTCAGACGATTGTGGTAGAAGAGGGAAAGTATTAAAGATGAGTATAATGGAGAAGAATTCAGAGGTTTACGGTAAGAGAGGGAAGGTATCAAAGAGGGAAGGTACAAGGGAAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTTCTGGGACTACTGTGTTTTGTTGTGGTAGTAACAATGTTGTCAAAAGAGGGAGTTTATTTTATGATGGCATAGTTTGTGATTGTTGTCGTGTTAATTTCACTATCACTGGATTTGAGGCTCATGCTGGTTGTACAAGGCATAGACCATCCACTACTATCTTGTTGGAAGACGGAAGGTCATTGTTGGAATGTCAGAGGGAAGCTCAGAGTTCGCATGATGAAAAGGGGAATCATTGTGTGGCTGAAGCAGATTCTGAAGCACAAAATCATTGTGTTTCCGAAGCAAGTTCTGAAGTAGGGAATCACTGTGTTTCCAAAGCAAATAATGATGGTGTTTGTTCTATTTGTGGTTTGGGAGGTGATATAGTACTATGTGATCGATGTCCTTCTGCATTCCACCTCGTTTGCTTAGGTCTCGATCAAGTTCCGGATGGTGATTGGTTTTGTCCAACTTGTTGTTGCAAAATATGTTATCACCCAAAATGCAAACAACAATGTGCAGATGAAAATGATAACAATATTCTTGTTTGTGTTCAATGTGAGCAAAATTTTCACTTTGGATGTGTAAAGGCTACAAGATTTGGATCTAGTCACATGGAGAGCAATGTTAAAAACAGGAACTGGTTTTGCAGTGTAGTTTGCGGGAAGATGTTCTTCTGTCTGAAGAAGCTATTAGGGAAACCAATTAAGGTTGCAAATAAAATAAATTGGACACTGTTGAAGAATTTGAGTAGTGATGATGATGGCGGAGATTTTACTTCAAATGAGCTTAGTCAAAAGAAGAGAAAGTTGAATGTGGCTCTTGATGTATTGTATGAGAGTTTTAACCCAACTATTGATGCTTTATCTGGAAGAGAAATGATTAAAGATGTCGTTTTTAGTAGAGGCTCAAAACATAAACGCTTGAATTTCCATGGTTTCTATAATGTGATTTTAGAGAAAATGGGTAAAGTCATTTCGGTTGCAACTATAAGAATTTATGGTCAAAAGGTTGCCGAGATAGTTTTCGTGGCTACCAAGGAACAATATCGAAGACAAGGAATGTGTCGTTTGTTGATGCACGAGCTTGAGAAACAGTTGACACGCTTAGGAGTTGAAAGCTTGGTTTTGCATTCCTCCGAGGATGCTATAGACACGTGGACAAAAGCGTTTGGTTTTGCTAGGATAACCCGTGAAGACAAGTGTCAATTTGTTGATAAAACTTTCTTAGAATTTCAGAACACTATCATGTGCCTTAAATCCCTAAATAGACCTATATGGCCTTGTATTGCTTGA

Protein sequence

>Msa0381200

MDSCSPPPDFNIEPENCPEPNNAKNYISLRKPCESCIEEGGCSLKHPSTAAPVAAISSSLLRLKKRLRESEETAEATISLSLSQSKKRPRESEEAAAIAISSESDESTSDDDSEVSSCSSESTSDEDFEVSSFSSIKKSTVTTVSTSMENEKRVTRSEPEVTNSVGSGKRGKVLKMSTMEKNSDDCGRRGKVLKMSIMEKNSEVYGKRGKVSKREGTRERYSLVSWLIKNQVLVSGTTVFCCGSNNVVKRGSLFYDGIVCDCCRVNFTITGFEAHAGCTRHRPSTTILLEDGRSLLECQREAQSSHDEKGNHCVAEADSEAQNHCVSEASSEVGNHCVSKANNDGVCSICGLGGDIVLCDRCPSAFHLVCLGLDQVPDGDWFCPTCCCKICYHPKCKQQCADENDNNILVCVQCEQNFHFGCVKATRFGSSHMESNVKNRNWFCSVVCGKMFFCLKKLLGKPIKVANKINWTLLKNLSSDDDGGDFTSNELSQKKRKLNVALDVLYESFNPTIDALSGREMIKDVVFSRGSKHKRLNFHGFYNVILEKMGKVISVATIRIYGQKVAEIVFVATKEQYRRQGMCRLLMHELEKQLTRLGVESLVLHSSEDAIDTWTKAFGFARITREDKCQFVDKTFLEFQNTIMCLKSLNRPIWPCIA*