Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413860 | sp|F4IXE7|IDM1_ARATH | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.95e-63 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413860 | A0A072V1D9 | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1413860 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0381200 | Msa1413860 | 0.999334 | 6.412501e-304 | -8.615850e-47 |
| Msa0431040 | Msa1413860 | 0.975958 | 6.456050e-141 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413860 | MtrunA17_Chr3g0134811 | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
| Msa1413860 | MtrunA17_Chr7g0270101 | 71.160 | 638 | 138 | 3 | 44 | 658 | 182 | 796 | 0.0 | 873 |
| Msa1413860 | MtrunA17_Chr7g0270101 | 66.250 | 80 | 24 | 1 | 22 | 101 | 74 | 150 | 5.59e-19 | 91.7 |
| Msa1413860 | MtrunA17_Chr3g0134821 | 65.954 | 608 | 134 | 3 | 51 | 658 | 307 | 841 | 0.0 | 761 |
| Msa1413860 | MtrunA17_Chr3g0134821 | 34.783 | 253 | 94 | 7 | 1 | 190 | 1 | 245 | 5.62e-21 | 98.2 |
| Msa1413860 | MtrunA17_Chr5g0407211 | 72.955 | 440 | 101 | 5 | 223 | 658 | 3 | 428 | 0.0 | 665 |
| Msa1413860 | MtrunA17_Chr5g0407251 | 72.500 | 440 | 103 | 5 | 223 | 658 | 3 | 428 | 0.0 | 659 |
| Msa1413860 | MtrunA17_Chr3g0134851 | 47.360 | 606 | 166 | 10 | 57 | 651 | 3 | 466 | 6.89e-147 | 434 |
| Msa1413860 | MtrunA17_Chr5g0430361 | 40.826 | 436 | 225 | 8 | 222 | 651 | 651 | 1059 | 6.94e-106 | 345 |
| Msa1413860 | MtrunA17_Chr3g0105291 | 41.149 | 435 | 221 | 9 | 222 | 649 | 602 | 1008 | 1.67e-104 | 342 |
| Msa1413860 | MtrunA17_Chr2g0316251 | 35.412 | 449 | 257 | 9 | 206 | 649 | 746 | 1166 | 2.54e-79 | 275 |
| Msa1413860 | MtrunA17_Chr1g0205451 | 32.715 | 431 | 268 | 4 | 220 | 649 | 603 | 1012 | 1.55e-67 | 241 |
| Msa1413860 | MtrunA17_Chr1g0185491 | 32.045 | 440 | 265 | 8 | 220 | 651 | 809 | 1222 | 2.53e-65 | 234 |
| Msa1413860 | MtrunA17_Chr7g0259981 | 31.562 | 320 | 188 | 6 | 338 | 655 | 8 | 298 | 5.88e-46 | 165 |
| Msa1413860 | MtrunA17_Chr1g0182481 | 26.013 | 469 | 250 | 15 | 224 | 649 | 478 | 892 | 6.03e-43 | 166 |
| Msa1413860 | MtrunA17_Chr7g0265211 | 25.263 | 475 | 237 | 14 | 249 | 656 | 527 | 950 | 7.14e-38 | 150 |
| Msa1413860 | MtrunA17_Chr1g0179841 | 24.837 | 459 | 241 | 12 | 257 | 651 | 386 | 804 | 1.29e-30 | 128 |
| Msa1413860 | MtrunA17_Chr4g0028111 | 26.265 | 415 | 197 | 12 | 272 | 621 | 189 | 559 | 4.62e-27 | 116 |
| Msa1413860 | MtrunA17_Chr4g0055731 | 22.973 | 444 | 246 | 15 | 220 | 649 | 108 | 469 | 5.99e-23 | 102 |
| Msa1413860 | MtrunA17_Chr2g0320451 | 29.630 | 189 | 112 | 6 | 469 | 653 | 852 | 1023 | 1.92e-18 | 90.1 |
| Msa1413860 | MtrunA17_Chr4g0025251 | 26.692 | 266 | 156 | 8 | 412 | 652 | 453 | 704 | 1.75e-17 | 86.7 |
| Msa1413860 | MtrunA17_Chr3g0139561 | 32.086 | 187 | 98 | 7 | 441 | 620 | 191 | 355 | 9.27e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413860 | AT5G58610.4 | 40.181 | 443 | 237 | 7 | 211 | 649 | 359 | 777 | 1.40e-101 | 330 |
| Msa1413860 | AT5G58610.8 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.32e-99 | 328 |
| Msa1413860 | AT5G58610.2 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.32e-99 | 328 |
| Msa1413860 | AT5G58610.3 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.76e-99 | 328 |
| Msa1413860 | AT5G58610.5 | 40.181 | 443 | 237 | 7 | 211 | 649 | 581 | 999 | 3.16e-99 | 328 |
| Msa1413860 | AT5G58610.7 | 40.181 | 443 | 237 | 7 | 211 | 649 | 581 | 999 | 4.86e-99 | 327 |
| Msa1413860 | AT5G58610.6 | 38.095 | 441 | 223 | 7 | 211 | 649 | 581 | 973 | 7.20e-88 | 296 |
| Msa1413860 | AT5G58610.1 | 38.095 | 441 | 223 | 7 | 211 | 649 | 581 | 973 | 1.15e-87 | 296 |
| Msa1413860 | AT5G58610.10 | 39.642 | 391 | 208 | 7 | 211 | 597 | 590 | 956 | 2.83e-84 | 285 |
| Msa1413860 | AT5G58610.9 | 39.642 | 391 | 208 | 7 | 211 | 597 | 581 | 947 | 5.12e-84 | 284 |
| Msa1413860 | AT5G36740.5 | 32.054 | 443 | 260 | 8 | 215 | 649 | 540 | 949 | 7.09e-70 | 247 |
| Msa1413860 | AT5G36740.1 | 32.054 | 443 | 260 | 8 | 215 | 649 | 540 | 949 | 7.09e-70 | 247 |
| Msa1413860 | AT5G58610.11 | 38.244 | 353 | 190 | 7 | 211 | 559 | 581 | 909 | 1.02e-68 | 241 |
| Msa1413860 | AT1G05380.3 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
| Msa1413860 | AT1G05380.1 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
| Msa1413860 | AT1G05380.2 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
| Msa1413860 | AT5G36740.4 | 31.473 | 448 | 266 | 8 | 215 | 649 | 387 | 806 | 1.37e-67 | 239 |
| Msa1413860 | AT3G14980.5 | 31.364 | 440 | 266 | 8 | 222 | 655 | 575 | 984 | 1.85e-64 | 231 |
| Msa1413860 | AT3G14980.6 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
| Msa1413860 | AT3G14980.1 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
| Msa1413860 | AT3G14980.2 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
| Msa1413860 | AT3G14980.3 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 3.21e-64 | 230 |
| Msa1413860 | AT5G36670.4 | 29.847 | 459 | 263 | 10 | 215 | 649 | 540 | 963 | 4.85e-61 | 221 |
| Msa1413860 | AT5G36670.5 | 29.847 | 459 | 263 | 10 | 215 | 649 | 540 | 963 | 4.85e-61 | 221 |
| Msa1413860 | AT4G14920.2 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.02e-60 | 220 |
| Msa1413860 | AT4G14920.1 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.02e-60 | 220 |
| Msa1413860 | AT4G14920.3 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.11e-60 | 220 |
| Msa1413860 | AT5G36670.3 | 29.310 | 464 | 269 | 10 | 215 | 649 | 387 | 820 | 1.24e-58 | 214 |
| Msa1413860 | AT5G36670.2 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
| Msa1413860 | AT5G36740.2 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
| Msa1413860 | AT5G36740.3 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
| Msa1413860 | AT5G36670.1 | 29.310 | 464 | 269 | 10 | 215 | 649 | 540 | 973 | 2.74e-58 | 213 |
| Msa1413860 | AT5G63900.1 | 36.570 | 309 | 169 | 8 | 346 | 651 | 258 | 542 | 4.97e-58 | 205 |
| Msa1413860 | AT3G53680.2 | 28.859 | 447 | 222 | 14 | 224 | 624 | 411 | 807 | 8.31e-44 | 169 |
| Msa1413860 | AT3G53680.1 | 28.859 | 447 | 222 | 14 | 224 | 624 | 409 | 805 | 9.47e-44 | 169 |
| Msa1413860 | AT3G14980.4 | 30.145 | 345 | 205 | 8 | 222 | 560 | 620 | 934 | 4.64e-42 | 164 |
| Msa1413860 | AT2G37520.1 | 26.025 | 488 | 239 | 15 | 224 | 651 | 392 | 817 | 5.68e-42 | 163 |
| Msa1413860 | AT2G27980.1 | 26.389 | 504 | 263 | 14 | 217 | 652 | 597 | 1060 | 2.76e-38 | 152 |
| Msa1413860 | AT2G36720.1 | 25.272 | 459 | 239 | 13 | 257 | 653 | 557 | 973 | 9.92e-38 | 151 |
| Msa1413860 | AT2G36720.2 | 25.272 | 459 | 239 | 13 | 257 | 653 | 557 | 973 | 9.92e-38 | 151 |
Find 118 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACATTGTTGTTTGCATTT+TGG | 0.154123 | tig0024068:+78627 | None:intergenic |
| GTTGCAACTATAAGAATTTA+TGG | 0.208645 | tig0024068:-78144 | Msa1413860:CDS |
| AAGGCCATATAGGTCTATTT+AGG | 0.215735 | tig0024068:+77863 | None:intergenic |
| CCAACTATTGATGCTTTATC+TGG | 0.251503 | tig0024068:-78276 | Msa1413860:CDS |
| AACACCATCATTATTTGCTT+TGG | 0.281757 | tig0024068:+78791 | None:intergenic |
| TTCTGTCTGAAGAAGCTATT+AGG | 0.283860 | tig0024068:-78450 | Msa1413860:CDS |
| AGGTTGCAAATAAAATAAAT+TGG | 0.285418 | tig0024068:-78416 | Msa1413860:CDS |
| TAGGTCTATTTAGGGATTTA+AGG | 0.304954 | tig0024068:+77872 | None:intergenic |
| GTTTGTTCTATTTGTGGTTT+GGG | 0.311387 | tig0024068:-78771 | Msa1413860:CDS |
| GCTATTAGGGAAACCAATTA+AGG | 0.314529 | tig0024068:-78436 | Msa1413860:CDS |
| AAAGGTATTCACTTGTTTCT+TGG | 0.322354 | tig0024068:-79151 | Msa1413860:CDS |
| TGTGTAAAGGCTACAAGATT+TGG | 0.323605 | tig0024068:-78543 | Msa1413860:CDS |
| GTTGATAAAGAATCAAGTTT+TGG | 0.324712 | tig0024068:-79129 | Msa1413860:CDS |
| AGGCCATATAGGTCTATTTA+GGG | 0.326281 | tig0024068:+77864 | None:intergenic |
| AATCCCTAAATAGACCTATA+TGG | 0.346948 | tig0024068:-77867 | Msa1413860:CDS |
| TGTTTGTTCTATTTGTGGTT+TGG | 0.372212 | tig0024068:-78772 | Msa1413860:CDS |
| GAAAATGGGTAAAGTCATTT+CGG | 0.376245 | tig0024068:-78166 | Msa1413860:CDS |
| TATGGCCTTGTATTGCTTGA+TGG | 0.376913 | tig0024068:-77849 | None:intergenic |
| CTTAGGTCTCGATCAAGTTC+CGG | 0.377173 | tig0024068:-78697 | Msa1413860:CDS |
| TTAGGTTCTGGGCAGTTCTC+AGG | 0.378707 | tig0024068:+79767 | None:intergenic |
| CGTGTTAATTTCACTATCAC+TGG | 0.385095 | tig0024068:-79017 | Msa1413860:CDS |
| CCCTACTTCAGAACTTGCTT+CGG | 0.386240 | tig0024068:+78827 | None:intergenic |
| CCAGATAAAGCATCAATAGT+TGG | 0.388520 | tig0024068:+78276 | None:intergenic |
| AGTAACAATGTTGTCAAAAG+AGG | 0.388998 | tig0024068:-79077 | Msa1413860:CDS |
| TCAGGTTCTATGTTGAAATC+AGG | 0.401611 | tig0024068:+79785 | None:intergenic |
| AGTATTAAAGATGAGTATAA+TGG | 0.402129 | tig0024068:-79234 | Msa1413860:CDS |
| GATGGTGTTTGTTCTATTTG+TGG | 0.402818 | tig0024068:-78777 | Msa1413860:CDS |
| CAAATTGACACTTGTCTTCA+CGG | 0.405716 | tig0024068:+77935 | None:intergenic |
| TTCTTCAATGCAACTCTCGC+AGG | 0.405765 | tig0024068:+79712 | None:intergenic |
| CAATTTCTTCGTCTCTGTTA+CGG | 0.406401 | tig0024068:-79643 | Msa1413860:CDS |
| ACCATCCACTACTATCTTGT+TGG | 0.407099 | tig0024068:-78961 | Msa1413860:CDS |
| TGCTATTGCTGCTGCTTCCT+CGG | 0.411590 | tig0024068:+79532 | None:intergenic |
| GCATTCCACCTCGTTTGCTT+AGG | 0.414402 | tig0024068:-78714 | Msa1413860:CDS |
| GAGAAGAATTCAGAGGTTTA+CGG | 0.421103 | tig0024068:-79212 | Msa1413860:CDS |
| GCTGCTTCCTCGGATTCTCT+TGG | 0.429778 | tig0024068:+79542 | None:intergenic |
| CCCACCGAATTAGTAACTTC+TGG | 0.432390 | tig0024068:+79332 | None:intergenic |
| TCTGTCTGAAGAAGCTATTA+GGG | 0.432712 | tig0024068:-78449 | Msa1413860:CDS |
| TTTCACTATCACTGGATTTG+AGG | 0.433458 | tig0024068:-79009 | Msa1413860:CDS |
| ATCAAGTTCCGGATGGTGAT+TGG | 0.433575 | tig0024068:-78686 | Msa1413860:CDS |
| CATAAACGCTTGAATTTCCA+TGG | 0.434704 | tig0024068:-78210 | Msa1413860:CDS |
| TATAAGAATTTATGGTCAAA+AGG | 0.441015 | tig0024068:-78136 | Msa1413860:CDS |
| TCAGAGTTCGCATGATGAAA+AGG | 0.443317 | tig0024068:-78901 | Msa1413860:CDS |
| CAGATAAAGCATCAATAGTT+GGG | 0.446006 | tig0024068:+78277 | None:intergenic |
| TGTTGCTTCTGCTGTTTCCT+CGG | 0.450642 | tig0024068:+79598 | None:intergenic |
| CAGAGTTCGCATGATGAAAA+GGG | 0.457917 | tig0024068:-78900 | Msa1413860:CDS |
| GCTACTGGTGCTGCAGTCGA+AGG | 0.458616 | tig0024068:+79668 | None:intergenic |
| TGAACCAGAAGTTACTAATT+CGG | 0.467506 | tig0024068:-79336 | Msa1413860:CDS |
| CAAGCAATACAAGGCCATAT+AGG | 0.468400 | tig0024068:+77853 | None:intergenic |
| CTGCAGTCGAAGGGTGTTTG+AGG | 0.471352 | tig0024068:+79678 | None:intergenic |
| GACGAAGAAATTGCTGCTAC+TGG | 0.475004 | tig0024068:+79653 | None:intergenic |
| GACACGTGGACAAAAGCGTT+TGG | 0.477202 | tig0024068:-77973 | Msa1413860:CDS |
| GAGAAACAGTTGACACGCTT+AGG | 0.478300 | tig0024068:-78036 | Msa1413860:CDS |
| AGGCTCATGCTGGTTGTACA+AGG | 0.491245 | tig0024068:-78989 | Msa1413860:CDS |
| AAATTGACACTTGTCTTCAC+GGG | 0.497364 | tig0024068:+77936 | None:intergenic |
| GAGAGGGAAGGTATCAAAGA+GGG | 0.502506 | tig0024068:-79186 | Msa1413860:CDS |
| TACTACGGTGTCAACATCAA+TGG | 0.502626 | tig0024068:-79384 | Msa1413860:CDS |
| TTGTCTTCGATATTGTTCCT+TGG | 0.503462 | tig0024068:+78089 | None:intergenic |
| ATCATCAGAAGTTGATTCAT+CGG | 0.513368 | tig0024068:+79496 | None:intergenic |
| GGAAGACGGAAGGTCATTGT+TGG | 0.514903 | tig0024068:-78940 | Msa1413860:CDS |
| ACTGGATTTGAGGCTCATGC+TGG | 0.514944 | tig0024068:-78999 | Msa1413860:CDS |
| TATCAAAGAGGGAAGGTACA+AGG | 0.524975 | tig0024068:-79175 | Msa1413860:CDS |
| CCACGTGTCTATAGCATCCT+CGG | 0.528623 | tig0024068:+77987 | None:intergenic |
| CCGAAGCAAGTTCTGAAGTA+GGG | 0.528703 | tig0024068:-78827 | Msa1413860:CDS |
| TCTTCAATGCAACTCTCGCA+GGG | 0.531694 | tig0024068:+79713 | None:intergenic |
| GTTACTAATTCGGTGGGTAG+TGG | 0.540215 | tig0024068:-79326 | Msa1413860:CDS |
| TGCAGTCGAAGGGTGTTTGA+GGG | 0.545311 | tig0024068:+79679 | None:intergenic |
| TCCGAAGCAAGTTCTGAAGT+AGG | 0.548155 | tig0024068:-78828 | Msa1413860:CDS |
| ACGCTTAGGAGTTGAAAGCT+TGG | 0.553379 | tig0024068:-78022 | Msa1413860:CDS |
| CAGACGATTGTGGTAGAAGA+GGG | 0.555231 | tig0024068:-79259 | Msa1413860:CDS |
| CTACTGGTGCTGCAGTCGAA+GGG | 0.556866 | tig0024068:+79669 | None:intergenic |
| TGCGAGAGTTGCATTGAAGA+AGG | 0.557070 | tig0024068:-79710 | Msa1413860:CDS |
| AACTACCATCAAGCAATACA+AGG | 0.564139 | tig0024068:+77844 | None:intergenic |
| GGACAAAACCAATCACCATC+CGG | 0.566171 | tig0024068:+78678 | None:intergenic |
| CAGAGGTTTACGGTAAGAGA+GGG | 0.567218 | tig0024068:-79202 | Msa1413860:CDS |
| TCGGTGGGTAGTGGTAAAAG+AGG | 0.571961 | tig0024068:-79317 | Msa1413860:CDS |
| AAATCACATTATAGAAACCA+TGG | 0.572412 | tig0024068:+78193 | None:intergenic |
| GGTAGCCACGAAAACTATCT+CGG | 0.575564 | tig0024068:+78110 | None:intergenic |
| TATAATGGAGAAGAATTCAG+AGG | 0.575599 | tig0024068:-79219 | Msa1413860:CDS |
| TCAGACGATTGTGGTAGAAG+AGG | 0.577488 | tig0024068:-79260 | Msa1413860:CDS |
| TCAGAGGTTTACGGTAAGAG+AGG | 0.577597 | tig0024068:-79203 | Msa1413860:CDS |
| GTAACAATGTTGTCAAAAGA+GGG | 0.581494 | tig0024068:-79076 | Msa1413860:CDS |
| TGTTCTATTTGTGGTTTGGG+AGG | 0.585455 | tig0024068:-78768 | Msa1413860:CDS |
| ACTACTATCTTGTTGGAAGA+CGG | 0.590421 | tig0024068:-78954 | Msa1413860:CDS |
| AAAGCGACCAAGAGAATCCG+AGG | 0.592053 | tig0024068:-79549 | Msa1413860:CDS |
| AGAGAGGGAAGGTATCAAAG+AGG | 0.595325 | tig0024068:-79187 | Msa1413860:CDS |
| GTTTCCAAAGCAAATAATGA+TGG | 0.599744 | tig0024068:-78795 | Msa1413860:CDS |
| ACCAGAAGTTACTAATTCGG+TGG | 0.600989 | tig0024068:-79333 | Msa1413860:CDS |
| AAAGAGATTGAGAGAATCCG+AGG | 0.612293 | tig0024068:-79615 | Msa1413860:CDS |
| GAGAAGAATTCAGACGATTG+TGG | 0.613172 | tig0024068:-79269 | Msa1413860:CDS |
| GTCATTGTTGGAATGTCAGA+GGG | 0.614589 | tig0024068:-78928 | Msa1413860:CDS |
| AGAGGGAAGGTACAAGGGAA+AGG | 0.618121 | tig0024068:-79169 | Msa1413860:CDS |
| GTCTTCCAACAAGATAGTAG+TGG | 0.619064 | tig0024068:+78956 | None:intergenic |
| GGTCATTGTTGGAATGTCAG+AGG | 0.622266 | tig0024068:-78929 | Msa1413860:CDS |
| AAAGAAGAGAAAGTTGAATG+TGG | 0.626130 | tig0024068:-78328 | Msa1413860:CDS |
| CCAGAAGTTACTAATTCGGT+GGG | 0.626761 | tig0024068:-79332 | Msa1413860:CDS |
| TTCTGAATCAACTTCTGACG+AGG | 0.630454 | tig0024068:-79450 | Msa1413860:CDS |
| TCCAACAAGATAGTAGTGGA+TGG | 0.630549 | tig0024068:+78960 | None:intergenic |
| CAAACGAGGTGGAATGCAGA+AGG | 0.631169 | tig0024068:+78720 | None:intergenic |
| GAGAGTTGCATTGAAGAAGG+AGG | 0.635933 | tig0024068:-79707 | Msa1413860:CDS |
| GGGTAGTGGTAAAAGAGGAA+AGG | 0.636646 | tig0024068:-79312 | Msa1413860:CDS |
| AGAGTTGCATTGAAGAAGGA+GGG | 0.637310 | tig0024068:-79706 | Msa1413860:CDS |
| ATCAAAGAGGGAAGGTACAA+GGG | 0.637578 | tig0024068:-79174 | Msa1413860:CDS |
| CTATCTTGTTGGAAGACGGA+AGG | 0.639850 | tig0024068:-78950 | Msa1413860:CDS |
| GGGAAGGTATCAAAGAGGGA+AGG | 0.651040 | tig0024068:-79182 | Msa1413860:CDS |
| AGAGTTCGCATGATGAAAAG+GGG | 0.652963 | tig0024068:-78899 | Msa1413860:CDS |
| TCTATGTTGAAATCAGGAGG+TGG | 0.653673 | tig0024068:+79791 | None:intergenic |
| GGTTCTATGTTGAAATCAGG+AGG | 0.654128 | tig0024068:+79788 | None:intergenic |
| GGTTTACGGTAAGAGAGGGA+AGG | 0.658054 | tig0024068:-79198 | Msa1413860:CDS |
| AAGATTTGGATCTAGTCACA+TGG | 0.660288 | tig0024068:-78529 | Msa1413860:CDS |
| AATTTGAGTAGTGATGATGA+TGG | 0.661624 | tig0024068:-78381 | Msa1413860:CDS |
| AAGGAACAATATCGAAGACA+AGG | 0.663403 | tig0024068:-78087 | Msa1413860:CDS |
| CCGAGGATGCTATAGACACG+TGG | 0.685477 | tig0024068:-77987 | Msa1413860:CDS |
| TTGAGTAGTGATGATGATGG+CGG | 0.685672 | tig0024068:-78378 | Msa1413860:CDS |
| GGTCTCGATCAAGTTCCGGA+TGG | 0.685979 | tig0024068:-78693 | Msa1413860:CDS |
| GATCGAGACCTAAGCAAACG+AGG | 0.703690 | tig0024068:+78706 | None:intergenic |
| CGAGACCTAAGCAAACGAGG+TGG | 0.726299 | tig0024068:+78709 | None:intergenic |
| CGTGTCTATAGCATCCTCGG+AGG | 0.738184 | tig0024068:+77990 | None:intergenic |
| TGAAAAGGGGAATCATTGTG+TGG | 0.749018 | tig0024068:-78886 | Msa1413860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTAAAGATGAGTATAA+TGG | - | tig0024068:78424-78443 | Msa1413860:CDS | 20.0% |
| !!! | ATTTTATTTGCAACCTTAAT+TGG | + | tig0024068:79238-79257 | None:intergenic | 20.0% |
| !! | AGGTTGCAAATAAAATAAAT+TGG | - | tig0024068:79242-79261 | Msa1413860:CDS | 20.0% |
| !!! | TAATGTGATTTTAGAGAAAA+TGG | - | tig0024068:79477-79496 | Msa1413860:CDS | 20.0% |
| !!! | AATGTGATTTTAGAGAAAAT+GGG | - | tig0024068:79478-79497 | Msa1413860:CDS | 20.0% |
| !! | TATAAGAATTTATGGTCAAA+AGG | - | tig0024068:79522-79541 | Msa1413860:CDS | 20.0% |
| !! | AGTATTAAAGATGAGTATAA+TGG | - | tig0024068:78424-78443 | Msa1413860:CDS | 20.0% |
| !!! | ATTTTATTTGCAACCTTAAT+TGG | + | tig0024068:79238-79257 | None:intergenic | 20.0% |
| !! | AGGTTGCAAATAAAATAAAT+TGG | - | tig0024068:79242-79261 | Msa1413860:CDS | 20.0% |
| !!! | TAATGTGATTTTAGAGAAAA+TGG | - | tig0024068:79477-79496 | Msa1413860:CDS | 20.0% |
| !!! | AATGTGATTTTAGAGAAAAT+GGG | - | tig0024068:79478-79497 | Msa1413860:CDS | 20.0% |
| !! | TATAAGAATTTATGGTCAAA+AGG | - | tig0024068:79522-79541 | Msa1413860:CDS | 20.0% |
| !! | TCTAAGAGAAATGTAGTTTT+TGG | + | tig0024068:77922-77941 | None:intergenic | 25.0% |
| ! | CAGTTCGATTAAAAAATCTA+CGG | - | tig0024068:78250-78269 | Msa1413860:CDS | 25.0% |
| ! | TAAAAAATCTACGGTTACTA+CGG | - | tig0024068:78259-78278 | Msa1413860:CDS | 25.0% |
| !!! | GGTTTTAAAAATGAGTACAA+TGG | - | tig0024068:78367-78386 | Msa1413860:CDS | 25.0% |
| !!! | GTTGATAAAGAATCAAGTTT+TGG | - | tig0024068:78529-78548 | Msa1413860:CDS | 25.0% |
| ! | AAATCACATTATAGAAACCA+TGG | + | tig0024068:79468-79487 | None:intergenic | 25.0% |
| ! | GTTGCAACTATAAGAATTTA+TGG | - | tig0024068:79514-79533 | Msa1413860:CDS | 25.0% |
| !! | TCTAAGAGAAATGTAGTTTT+TGG | + | tig0024068:77922-77941 | None:intergenic | 25.0% |
| ! | CAGTTCGATTAAAAAATCTA+CGG | - | tig0024068:78250-78269 | Msa1413860:CDS | 25.0% |
| ! | TAAAAAATCTACGGTTACTA+CGG | - | tig0024068:78259-78278 | Msa1413860:CDS | 25.0% |
| !!! | GGTTTTAAAAATGAGTACAA+TGG | - | tig0024068:78367-78386 | Msa1413860:CDS | 25.0% |
| !!! | GTTGATAAAGAATCAAGTTT+TGG | - | tig0024068:78529-78548 | Msa1413860:CDS | 25.0% |
| ! | AAATCACATTATAGAAACCA+TGG | + | tig0024068:79468-79487 | None:intergenic | 25.0% |
| ! | GTTGCAACTATAAGAATTTA+TGG | - | tig0024068:79514-79533 | Msa1413860:CDS | 25.0% |
| !!! | ATGTAGTTTTTGGCATTGTT+AGG | + | tig0024068:77912-77931 | None:intergenic | 30.0% |
| ! | ATCATCAGAAGTTGATTCAT+CGG | + | tig0024068:78165-78184 | None:intergenic | 30.0% |
| TGAACCAGAAGTTACTAATT+CGG | - | tig0024068:78322-78341 | Msa1413860:CDS | 30.0% | |
| ! | TATAATGGAGAAGAATTCAG+AGG | - | tig0024068:78439-78458 | Msa1413860:CDS | 30.0% |
| !! | AAAGGTATTCACTTGTTTCT+TGG | - | tig0024068:78507-78526 | Msa1413860:CDS | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+TGG | - | tig0024068:78536-78555 | Msa1413860:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCT+GGG | - | tig0024068:78537-78556 | Msa1413860:CDS | 30.0% |
| AGTAACAATGTTGTCAAAAG+AGG | - | tig0024068:78581-78600 | Msa1413860:CDS | 30.0% | |
| GTAACAATGTTGTCAAAAGA+GGG | - | tig0024068:78582-78601 | Msa1413860:CDS | 30.0% | |
| !!! | AGAGGGAGTTTATTTTATGA+TGG | - | tig0024068:78599-78618 | Msa1413860:CDS | 30.0% |
| GTTTCCAAAGCAAATAATGA+TGG | - | tig0024068:78863-78882 | Msa1413860:CDS | 30.0% | |
| AACACCATCATTATTTGCTT+TGG | + | tig0024068:78870-78889 | None:intergenic | 30.0% | |
| TGTTTGTTCTATTTGTGGTT+TGG | - | tig0024068:78886-78905 | Msa1413860:CDS | 30.0% | |
| GTTTGTTCTATTTGTGGTTT+GGG | - | tig0024068:78887-78906 | Msa1413860:CDS | 30.0% | |
| ! | CATATTTTGCAACAACAAGT+TGG | + | tig0024068:79004-79023 | None:intergenic | 30.0% |
| !!! | CACATTGTTGTTTGCATTTT+GGG | + | tig0024068:79033-79052 | None:intergenic | 30.0% |
| ! | TGTGAGCAAAATTTTCACTT+TGG | - | tig0024068:79091-79110 | Msa1413860:CDS | 30.0% |
| ! | TTTTCACTTTGGATGTGTAA+AGG | - | tig0024068:79102-79121 | Msa1413860:CDS | 30.0% |
| ! | AATTTGAGTAGTGATGATGA+TGG | - | tig0024068:79277-79296 | Msa1413860:CDS | 30.0% |
| AAAGAAGAGAAAGTTGAATG+TGG | - | tig0024068:79330-79349 | Msa1413860:CDS | 30.0% | |
| ! | CAGATAAAGCATCAATAGTT+GGG | + | tig0024068:79384-79403 | None:intergenic | 30.0% |
| !!! | AAAGATGTCGTTTTTAGTAG+AGG | - | tig0024068:79418-79437 | Msa1413860:CDS | 30.0% |
| GAAAATGGGTAAAGTCATTT+CGG | - | tig0024068:79492-79511 | Msa1413860:CDS | 30.0% | |
| TAGGTCTATTTAGGGATTTA+AGG | + | tig0024068:79789-79808 | None:intergenic | 30.0% | |
| AATCCCTAAATAGACCTATA+TGG | - | tig0024068:79791-79810 | Msa1413860:CDS | 30.0% | |
| !!! | ATGTAGTTTTTGGCATTGTT+AGG | + | tig0024068:77912-77931 | None:intergenic | 30.0% |
| ! | ATCATCAGAAGTTGATTCAT+CGG | + | tig0024068:78165-78184 | None:intergenic | 30.0% |
| TGAACCAGAAGTTACTAATT+CGG | - | tig0024068:78322-78341 | Msa1413860:CDS | 30.0% | |
| ! | TATAATGGAGAAGAATTCAG+AGG | - | tig0024068:78439-78458 | Msa1413860:CDS | 30.0% |
| !! | AAAGGTATTCACTTGTTTCT+TGG | - | tig0024068:78507-78526 | Msa1413860:CDS | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+TGG | - | tig0024068:78536-78555 | Msa1413860:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCT+GGG | - | tig0024068:78537-78556 | Msa1413860:CDS | 30.0% |
| AGTAACAATGTTGTCAAAAG+AGG | - | tig0024068:78581-78600 | Msa1413860:CDS | 30.0% | |
| GTAACAATGTTGTCAAAAGA+GGG | - | tig0024068:78582-78601 | Msa1413860:CDS | 30.0% | |
| !!! | AGAGGGAGTTTATTTTATGA+TGG | - | tig0024068:78599-78618 | Msa1413860:CDS | 30.0% |
| GTTTCCAAAGCAAATAATGA+TGG | - | tig0024068:78863-78882 | Msa1413860:CDS | 30.0% | |
| AACACCATCATTATTTGCTT+TGG | + | tig0024068:78870-78889 | None:intergenic | 30.0% | |
| TGTTTGTTCTATTTGTGGTT+TGG | - | tig0024068:78886-78905 | Msa1413860:CDS | 30.0% | |
| GTTTGTTCTATTTGTGGTTT+GGG | - | tig0024068:78887-78906 | Msa1413860:CDS | 30.0% | |
| ! | CATATTTTGCAACAACAAGT+TGG | + | tig0024068:79004-79023 | None:intergenic | 30.0% |
| !!! | CACATTGTTGTTTGCATTTT+GGG | + | tig0024068:79033-79052 | None:intergenic | 30.0% |
| ! | TGTGAGCAAAATTTTCACTT+TGG | - | tig0024068:79091-79110 | Msa1413860:CDS | 30.0% |
| ! | TTTTCACTTTGGATGTGTAA+AGG | - | tig0024068:79102-79121 | Msa1413860:CDS | 30.0% |
| ! | AATTTGAGTAGTGATGATGA+TGG | - | tig0024068:79277-79296 | Msa1413860:CDS | 30.0% |
| AAAGAAGAGAAAGTTGAATG+TGG | - | tig0024068:79330-79349 | Msa1413860:CDS | 30.0% | |
| ! | CAGATAAAGCATCAATAGTT+GGG | + | tig0024068:79384-79403 | None:intergenic | 30.0% |
| !!! | AAAGATGTCGTTTTTAGTAG+AGG | - | tig0024068:79418-79437 | Msa1413860:CDS | 30.0% |
| GAAAATGGGTAAAGTCATTT+CGG | - | tig0024068:79492-79511 | Msa1413860:CDS | 30.0% | |
| TAGGTCTATTTAGGGATTTA+AGG | + | tig0024068:79789-79808 | None:intergenic | 30.0% | |
| AATCCCTAAATAGACCTATA+TGG | - | tig0024068:79791-79810 | Msa1413860:CDS | 30.0% | |
| TCAGGTTCTATGTTGAAATC+AGG | + | tig0024068:77876-77895 | None:intergenic | 35.0% | |
| ! | TTTTGGCATTGTTAGGTTCT+GGG | + | tig0024068:77905-77924 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTGTTAGGTTC+TGG | + | tig0024068:77906-77925 | None:intergenic | 35.0% |
| CAATTTCTTCGTCTCTGTTA+CGG | - | tig0024068:78015-78034 | Msa1413860:CDS | 35.0% | |
| GAGAAGAATTCAGAGGTTTA+CGG | - | tig0024068:78446-78465 | Msa1413860:CDS | 35.0% | |
| CGTGTTAATTTCACTATCAC+TGG | - | tig0024068:78641-78660 | Msa1413860:CDS | 35.0% | |
| TTTCACTATCACTGGATTTG+AGG | - | tig0024068:78649-78668 | Msa1413860:CDS | 35.0% | |
| ACTACTATCTTGTTGGAAGA+CGG | - | tig0024068:78704-78723 | Msa1413860:CDS | 35.0% | |
| GATGGTGTTTGTTCTATTTG+TGG | - | tig0024068:78881-78900 | Msa1413860:CDS | 35.0% | |
| !!! | GCACATTGTTGTTTGCATTT+TGG | + | tig0024068:79034-79053 | None:intergenic | 35.0% |
| TGTGTAAAGGCTACAAGATT+TGG | - | tig0024068:79115-79134 | Msa1413860:CDS | 35.0% | |
| AAGATTTGGATCTAGTCACA+TGG | - | tig0024068:79129-79148 | Msa1413860:CDS | 35.0% | |
| TGGAGAGCAATGTTAAAAAC+AGG | - | tig0024068:79149-79168 | Msa1413860:CDS | 35.0% | |
| GCAATGTTAAAAACAGGAAC+TGG | - | tig0024068:79155-79174 | Msa1413860:CDS | 35.0% | |
| TTCTGTCTGAAGAAGCTATT+AGG | - | tig0024068:79208-79227 | Msa1413860:CDS | 35.0% | |
| TCTGTCTGAAGAAGCTATTA+GGG | - | tig0024068:79209-79228 | Msa1413860:CDS | 35.0% | |
| GCTATTAGGGAAACCAATTA+AGG | - | tig0024068:79222-79241 | Msa1413860:CDS | 35.0% | |
| ! | CCAGATAAAGCATCAATAGT+TGG | + | tig0024068:79385-79404 | None:intergenic | 35.0% |
| CCAACTATTGATGCTTTATC+TGG | - | tig0024068:79382-79401 | Msa1413860:CDS | 35.0% | |
| CATAAACGCTTGAATTTCCA+TGG | - | tig0024068:79448-79467 | Msa1413860:CDS | 35.0% | |
| TTGTCTTCGATATTGTTCCT+TGG | + | tig0024068:79572-79591 | None:intergenic | 35.0% | |
| AAGGAACAATATCGAAGACA+AGG | - | tig0024068:79571-79590 | Msa1413860:CDS | 35.0% | |
| AAATTGACACTTGTCTTCAC+GGG | + | tig0024068:79725-79744 | None:intergenic | 35.0% | |
| CAAATTGACACTTGTCTTCA+CGG | + | tig0024068:79726-79745 | None:intergenic | 35.0% | |
| AGGCCATATAGGTCTATTTA+GGG | + | tig0024068:79797-79816 | None:intergenic | 35.0% | |
| AAGGCCATATAGGTCTATTT+AGG | + | tig0024068:79798-79817 | None:intergenic | 35.0% | |
| TCAGGTTCTATGTTGAAATC+AGG | + | tig0024068:77876-77895 | None:intergenic | 35.0% | |
| ! | TTTTGGCATTGTTAGGTTCT+GGG | + | tig0024068:77905-77924 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTGTTAGGTTC+TGG | + | tig0024068:77906-77925 | None:intergenic | 35.0% |
| CAATTTCTTCGTCTCTGTTA+CGG | - | tig0024068:78015-78034 | Msa1413860:CDS | 35.0% | |
| GAGAAGAATTCAGAGGTTTA+CGG | - | tig0024068:78446-78465 | Msa1413860:CDS | 35.0% | |
| CGTGTTAATTTCACTATCAC+TGG | - | tig0024068:78641-78660 | Msa1413860:CDS | 35.0% | |
| TTTCACTATCACTGGATTTG+AGG | - | tig0024068:78649-78668 | Msa1413860:CDS | 35.0% | |
| ACTACTATCTTGTTGGAAGA+CGG | - | tig0024068:78704-78723 | Msa1413860:CDS | 35.0% | |
| GATGGTGTTTGTTCTATTTG+TGG | - | tig0024068:78881-78900 | Msa1413860:CDS | 35.0% | |
| !!! | GCACATTGTTGTTTGCATTT+TGG | + | tig0024068:79034-79053 | None:intergenic | 35.0% |
| TGTGTAAAGGCTACAAGATT+TGG | - | tig0024068:79115-79134 | Msa1413860:CDS | 35.0% | |
| AAGATTTGGATCTAGTCACA+TGG | - | tig0024068:79129-79148 | Msa1413860:CDS | 35.0% | |
| TGGAGAGCAATGTTAAAAAC+AGG | - | tig0024068:79149-79168 | Msa1413860:CDS | 35.0% | |
| GCAATGTTAAAAACAGGAAC+TGG | - | tig0024068:79155-79174 | Msa1413860:CDS | 35.0% | |
| TTCTGTCTGAAGAAGCTATT+AGG | - | tig0024068:79208-79227 | Msa1413860:CDS | 35.0% | |
| TCTGTCTGAAGAAGCTATTA+GGG | - | tig0024068:79209-79228 | Msa1413860:CDS | 35.0% | |
| GCTATTAGGGAAACCAATTA+AGG | - | tig0024068:79222-79241 | Msa1413860:CDS | 35.0% | |
| ! | CCAGATAAAGCATCAATAGT+TGG | + | tig0024068:79385-79404 | None:intergenic | 35.0% |
| CCAACTATTGATGCTTTATC+TGG | - | tig0024068:79382-79401 | Msa1413860:CDS | 35.0% | |
| CATAAACGCTTGAATTTCCA+TGG | - | tig0024068:79448-79467 | Msa1413860:CDS | 35.0% | |
| TTGTCTTCGATATTGTTCCT+TGG | + | tig0024068:79572-79591 | None:intergenic | 35.0% | |
| AAGGAACAATATCGAAGACA+AGG | - | tig0024068:79571-79590 | Msa1413860:CDS | 35.0% | |
| AAATTGACACTTGTCTTCAC+GGG | + | tig0024068:79725-79744 | None:intergenic | 35.0% | |
| CAAATTGACACTTGTCTTCA+CGG | + | tig0024068:79726-79745 | None:intergenic | 35.0% | |
| AGGCCATATAGGTCTATTTA+GGG | + | tig0024068:79797-79816 | None:intergenic | 35.0% | |
| AAGGCCATATAGGTCTATTT+AGG | + | tig0024068:79798-79817 | None:intergenic | 35.0% | |
| TCTATGTTGAAATCAGGAGG+TGG | + | tig0024068:77870-77889 | None:intergenic | 40.0% | |
| GGTTCTATGTTGAAATCAGG+AGG | + | tig0024068:77873-77892 | None:intergenic | 40.0% | |
| AGAGTTGCATTGAAGAAGGA+GGG | - | tig0024068:77952-77971 | Msa1413860:CDS | 40.0% | |
| AAAGAGATTGAGAGAATCCG+AGG | - | tig0024068:78043-78062 | Msa1413860:CDS | 40.0% | |
| TTCTGAATCAACTTCTGACG+AGG | - | tig0024068:78208-78227 | Msa1413860:CDS | 40.0% | |
| ! | TACTACGGTGTCAACATCAA+TGG | - | tig0024068:78274-78293 | Msa1413860:CDS | 40.0% |
| ACCAGAAGTTACTAATTCGG+TGG | - | tig0024068:78325-78344 | Msa1413860:CDS | 40.0% | |
| CCAGAAGTTACTAATTCGGT+GGG | - | tig0024068:78326-78345 | Msa1413860:CDS | 40.0% | |
| GAGAAGAATTCAGACGATTG+TGG | - | tig0024068:78389-78408 | Msa1413860:CDS | 40.0% | |
| ! | TATCAAAGAGGGAAGGTACA+AGG | - | tig0024068:78483-78502 | Msa1413860:CDS | 40.0% |
| ! | ATCAAAGAGGGAAGGTACAA+GGG | - | tig0024068:78484-78503 | Msa1413860:CDS | 40.0% |
| ACCATCCACTACTATCTTGT+TGG | - | tig0024068:78697-78716 | Msa1413860:CDS | 40.0% | |
| ! | TCCAACAAGATAGTAGTGGA+TGG | + | tig0024068:78701-78720 | None:intergenic | 40.0% |
| GTCTTCCAACAAGATAGTAG+TGG | + | tig0024068:78705-78724 | None:intergenic | 40.0% | |
| GTCATTGTTGGAATGTCAGA+GGG | - | tig0024068:78730-78749 | Msa1413860:CDS | 40.0% | |
| TCAGAGTTCGCATGATGAAA+AGG | - | tig0024068:78757-78776 | Msa1413860:CDS | 40.0% | |
| CAGAGTTCGCATGATGAAAA+GGG | - | tig0024068:78758-78777 | Msa1413860:CDS | 40.0% | |
| AGAGTTCGCATGATGAAAAG+GGG | - | tig0024068:78759-78778 | Msa1413860:CDS | 40.0% | |
| TGAAAAGGGGAATCATTGTG+TGG | - | tig0024068:78772-78791 | Msa1413860:CDS | 40.0% | |
| ! | TGTTCTATTTGTGGTTTGGG+AGG | - | tig0024068:78890-78909 | Msa1413860:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+CGG | - | tig0024068:79175-79194 | Msa1413860:CDS | 40.0% |
| !! | TTGAGTAGTGATGATGATGG+CGG | - | tig0024068:79280-79299 | Msa1413860:CDS | 40.0% |
| !!! | CAAAAGCGTTTGGTTTTGCT+AGG | - | tig0024068:79695-79714 | Msa1413860:CDS | 40.0% |
| CAAGCAATACAAGGCCATAT+AGG | + | tig0024068:79808-79827 | None:intergenic | 40.0% | |
| TCTATGTTGAAATCAGGAGG+TGG | + | tig0024068:77870-77889 | None:intergenic | 40.0% | |
| GGTTCTATGTTGAAATCAGG+AGG | + | tig0024068:77873-77892 | None:intergenic | 40.0% | |
| AGAGTTGCATTGAAGAAGGA+GGG | - | tig0024068:77952-77971 | Msa1413860:CDS | 40.0% | |
| AAAGAGATTGAGAGAATCCG+AGG | - | tig0024068:78043-78062 | Msa1413860:CDS | 40.0% | |
| TTCTGAATCAACTTCTGACG+AGG | - | tig0024068:78208-78227 | Msa1413860:CDS | 40.0% | |
| ! | TACTACGGTGTCAACATCAA+TGG | - | tig0024068:78274-78293 | Msa1413860:CDS | 40.0% |
| ACCAGAAGTTACTAATTCGG+TGG | - | tig0024068:78325-78344 | Msa1413860:CDS | 40.0% | |
| CCAGAAGTTACTAATTCGGT+GGG | - | tig0024068:78326-78345 | Msa1413860:CDS | 40.0% | |
| GAGAAGAATTCAGACGATTG+TGG | - | tig0024068:78389-78408 | Msa1413860:CDS | 40.0% | |
| ! | TATCAAAGAGGGAAGGTACA+AGG | - | tig0024068:78483-78502 | Msa1413860:CDS | 40.0% |
| ! | ATCAAAGAGGGAAGGTACAA+GGG | - | tig0024068:78484-78503 | Msa1413860:CDS | 40.0% |
| ACCATCCACTACTATCTTGT+TGG | - | tig0024068:78697-78716 | Msa1413860:CDS | 40.0% | |
| ! | TCCAACAAGATAGTAGTGGA+TGG | + | tig0024068:78701-78720 | None:intergenic | 40.0% |
| GTCTTCCAACAAGATAGTAG+TGG | + | tig0024068:78705-78724 | None:intergenic | 40.0% | |
| GTCATTGTTGGAATGTCAGA+GGG | - | tig0024068:78730-78749 | Msa1413860:CDS | 40.0% | |
| TCAGAGTTCGCATGATGAAA+AGG | - | tig0024068:78757-78776 | Msa1413860:CDS | 40.0% | |
| CAGAGTTCGCATGATGAAAA+GGG | - | tig0024068:78758-78777 | Msa1413860:CDS | 40.0% | |
| AGAGTTCGCATGATGAAAAG+GGG | - | tig0024068:78759-78778 | Msa1413860:CDS | 40.0% | |
| TGAAAAGGGGAATCATTGTG+TGG | - | tig0024068:78772-78791 | Msa1413860:CDS | 40.0% | |
| ! | TGTTCTATTTGTGGTTTGGG+AGG | - | tig0024068:78890-78909 | Msa1413860:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+CGG | - | tig0024068:79175-79194 | Msa1413860:CDS | 40.0% |
| !! | TTGAGTAGTGATGATGATGG+CGG | - | tig0024068:79280-79299 | Msa1413860:CDS | 40.0% |
| !!! | CAAAAGCGTTTGGTTTTGCT+AGG | - | tig0024068:79695-79714 | Msa1413860:CDS | 40.0% |
| CAAGCAATACAAGGCCATAT+AGG | + | tig0024068:79808-79827 | None:intergenic | 40.0% | |
| TCTTCAATGCAACTCTCGCA+GGG | + | tig0024068:77948-77967 | None:intergenic | 45.0% | |
| TTCTTCAATGCAACTCTCGC+AGG | + | tig0024068:77949-77968 | None:intergenic | 45.0% | |
| TGCGAGAGTTGCATTGAAGA+AGG | - | tig0024068:77948-77967 | Msa1413860:CDS | 45.0% | |
| GAGAGTTGCATTGAAGAAGG+AGG | - | tig0024068:77951-77970 | Msa1413860:CDS | 45.0% | |
| GACGAAGAAATTGCTGCTAC+TGG | + | tig0024068:78008-78027 | None:intergenic | 45.0% | |
| !! | TGTTGCTTCTGCTGTTTCCT+CGG | + | tig0024068:78063-78082 | None:intergenic | 45.0% |
| CCCACCGAATTAGTAACTTC+TGG | + | tig0024068:78329-78348 | None:intergenic | 45.0% | |
| ! | GTTACTAATTCGGTGGGTAG+TGG | - | tig0024068:78332-78351 | Msa1413860:CDS | 45.0% |
| ! | GGGTAGTGGTAAAAGAGGAA+AGG | - | tig0024068:78346-78365 | Msa1413860:CDS | 45.0% |
| TCAGACGATTGTGGTAGAAG+AGG | - | tig0024068:78398-78417 | Msa1413860:CDS | 45.0% | |
| CAGACGATTGTGGTAGAAGA+GGG | - | tig0024068:78399-78418 | Msa1413860:CDS | 45.0% | |
| TCAGAGGTTTACGGTAAGAG+AGG | - | tig0024068:78455-78474 | Msa1413860:CDS | 45.0% | |
| CAGAGGTTTACGGTAAGAGA+GGG | - | tig0024068:78456-78475 | Msa1413860:CDS | 45.0% | |
| !! | AGAGAGGGAAGGTATCAAAG+AGG | - | tig0024068:78471-78490 | Msa1413860:CDS | 45.0% |
| !! | GAGAGGGAAGGTATCAAAGA+GGG | - | tig0024068:78472-78491 | Msa1413860:CDS | 45.0% |
| !! | GGGACTACTGTGTTTTGTTG+TGG | - | tig0024068:78557-78576 | Msa1413860:CDS | 45.0% |
| CTATCTTGTTGGAAGACGGA+AGG | - | tig0024068:78708-78727 | Msa1413860:CDS | 45.0% | |
| GGTCATTGTTGGAATGTCAG+AGG | - | tig0024068:78729-78748 | Msa1413860:CDS | 45.0% | |
| !! | TCCGAAGCAAGTTCTGAAGT+AGG | - | tig0024068:78830-78849 | Msa1413860:CDS | 45.0% |
| ! | CCCTACTTCAGAACTTGCTT+CGG | + | tig0024068:78834-78853 | None:intergenic | 45.0% |
| !! | CCGAAGCAAGTTCTGAAGTA+GGG | - | tig0024068:78831-78850 | Msa1413860:CDS | 45.0% |
| CTTAGGTCTCGATCAAGTTC+CGG | - | tig0024068:78961-78980 | Msa1413860:CDS | 45.0% | |
| ATCAAGTTCCGGATGGTGAT+TGG | - | tig0024068:78972-78991 | Msa1413860:CDS | 45.0% | |
| GGACAAAACCAATCACCATC+CGG | + | tig0024068:78983-79002 | None:intergenic | 45.0% | |
| !! | GGTTTTGCAGTGTAGTTTGC+GGG | - | tig0024068:79176-79195 | Msa1413860:CDS | 45.0% |
| GGTAGCCACGAAAACTATCT+CGG | + | tig0024068:79551-79570 | None:intergenic | 45.0% | |
| ! | GATAGTTTTCGTGGCTACCA+AGG | - | tig0024068:79552-79571 | Msa1413860:CDS | 45.0% |
| GAGAAACAGTTGACACGCTT+AGG | - | tig0024068:79622-79641 | Msa1413860:CDS | 45.0% | |
| ACGCTTAGGAGTTGAAAGCT+TGG | - | tig0024068:79636-79655 | Msa1413860:CDS | 45.0% | |
| TCTTCAATGCAACTCTCGCA+GGG | + | tig0024068:77948-77967 | None:intergenic | 45.0% | |
| TTCTTCAATGCAACTCTCGC+AGG | + | tig0024068:77949-77968 | None:intergenic | 45.0% | |
| TGCGAGAGTTGCATTGAAGA+AGG | - | tig0024068:77948-77967 | Msa1413860:CDS | 45.0% | |
| GAGAGTTGCATTGAAGAAGG+AGG | - | tig0024068:77951-77970 | Msa1413860:CDS | 45.0% | |
| GACGAAGAAATTGCTGCTAC+TGG | + | tig0024068:78008-78027 | None:intergenic | 45.0% | |
| !! | TGTTGCTTCTGCTGTTTCCT+CGG | + | tig0024068:78063-78082 | None:intergenic | 45.0% |
| CCCACCGAATTAGTAACTTC+TGG | + | tig0024068:78329-78348 | None:intergenic | 45.0% | |
| ! | GTTACTAATTCGGTGGGTAG+TGG | - | tig0024068:78332-78351 | Msa1413860:CDS | 45.0% |
| ! | GGGTAGTGGTAAAAGAGGAA+AGG | - | tig0024068:78346-78365 | Msa1413860:CDS | 45.0% |
| TCAGACGATTGTGGTAGAAG+AGG | - | tig0024068:78398-78417 | Msa1413860:CDS | 45.0% | |
| CAGACGATTGTGGTAGAAGA+GGG | - | tig0024068:78399-78418 | Msa1413860:CDS | 45.0% | |
| TCAGAGGTTTACGGTAAGAG+AGG | - | tig0024068:78455-78474 | Msa1413860:CDS | 45.0% | |
| CAGAGGTTTACGGTAAGAGA+GGG | - | tig0024068:78456-78475 | Msa1413860:CDS | 45.0% | |
| !! | AGAGAGGGAAGGTATCAAAG+AGG | - | tig0024068:78471-78490 | Msa1413860:CDS | 45.0% |
| !! | GAGAGGGAAGGTATCAAAGA+GGG | - | tig0024068:78472-78491 | Msa1413860:CDS | 45.0% |
| !! | GGGACTACTGTGTTTTGTTG+TGG | - | tig0024068:78557-78576 | Msa1413860:CDS | 45.0% |
| CTATCTTGTTGGAAGACGGA+AGG | - | tig0024068:78708-78727 | Msa1413860:CDS | 45.0% | |
| GGTCATTGTTGGAATGTCAG+AGG | - | tig0024068:78729-78748 | Msa1413860:CDS | 45.0% | |
| !! | TCCGAAGCAAGTTCTGAAGT+AGG | - | tig0024068:78830-78849 | Msa1413860:CDS | 45.0% |
| ! | CCCTACTTCAGAACTTGCTT+CGG | + | tig0024068:78834-78853 | None:intergenic | 45.0% |
| !! | CCGAAGCAAGTTCTGAAGTA+GGG | - | tig0024068:78831-78850 | Msa1413860:CDS | 45.0% |
| CTTAGGTCTCGATCAAGTTC+CGG | - | tig0024068:78961-78980 | Msa1413860:CDS | 45.0% | |
| ATCAAGTTCCGGATGGTGAT+TGG | - | tig0024068:78972-78991 | Msa1413860:CDS | 45.0% | |
| GGACAAAACCAATCACCATC+CGG | + | tig0024068:78983-79002 | None:intergenic | 45.0% | |
| !! | GGTTTTGCAGTGTAGTTTGC+GGG | - | tig0024068:79176-79195 | Msa1413860:CDS | 45.0% |
| GGTAGCCACGAAAACTATCT+CGG | + | tig0024068:79551-79570 | None:intergenic | 45.0% | |
| ! | GATAGTTTTCGTGGCTACCA+AGG | - | tig0024068:79552-79571 | Msa1413860:CDS | 45.0% |
| GAGAAACAGTTGACACGCTT+AGG | - | tig0024068:79622-79641 | Msa1413860:CDS | 45.0% | |
| ACGCTTAGGAGTTGAAAGCT+TGG | - | tig0024068:79636-79655 | Msa1413860:CDS | 45.0% | |
| !! | TTAGGTTCTGGGCAGTTCTC+AGG | + | tig0024068:77894-77913 | None:intergenic | 50.0% |
| !! | TGCAGTCGAAGGGTGTTTGA+GGG | + | tig0024068:77982-78001 | None:intergenic | 50.0% |
| AAAGCGACCAAGAGAATCCG+AGG | - | tig0024068:78109-78128 | Msa1413860:CDS | 50.0% | |
| ! | TGCTATTGCTGCTGCTTCCT+CGG | + | tig0024068:78129-78148 | None:intergenic | 50.0% |
| ! | TCGGTGGGTAGTGGTAAAAG+AGG | - | tig0024068:78341-78360 | Msa1413860:CDS | 50.0% |
| GGTTTACGGTAAGAGAGGGA+AGG | - | tig0024068:78460-78479 | Msa1413860:CDS | 50.0% | |
| !! | GGGAAGGTATCAAAGAGGGA+AGG | - | tig0024068:78476-78495 | Msa1413860:CDS | 50.0% |
| ! | AGAGGGAAGGTACAAGGGAA+AGG | - | tig0024068:78489-78508 | Msa1413860:CDS | 50.0% |
| ! | ACTGGATTTGAGGCTCATGC+TGG | - | tig0024068:78659-78678 | Msa1413860:CDS | 50.0% |
| ! | AGGCTCATGCTGGTTGTACA+AGG | - | tig0024068:78669-78688 | Msa1413860:CDS | 50.0% |
| GGAAGACGGAAGGTCATTGT+TGG | - | tig0024068:78718-78737 | Msa1413860:CDS | 50.0% | |
| CAAACGAGGTGGAATGCAGA+AGG | + | tig0024068:78941-78960 | None:intergenic | 50.0% | |
| GCATTCCACCTCGTTTGCTT+AGG | - | tig0024068:78944-78963 | Msa1413860:CDS | 50.0% | |
| GATCGAGACCTAAGCAAACG+AGG | + | tig0024068:78955-78974 | None:intergenic | 50.0% | |
| ! | GGTTGCCGAGATAGTTTTCG+TGG | - | tig0024068:79543-79562 | Msa1413860:CDS | 50.0% |
| !!! | CTTGGTTTTGCATTCCTCCG+AGG | - | tig0024068:79654-79673 | Msa1413860:CDS | 50.0% |
| CCACGTGTCTATAGCATCCT+CGG | + | tig0024068:79674-79693 | None:intergenic | 50.0% | |
| !! | GACACGTGGACAAAAGCGTT+TGG | - | tig0024068:79685-79704 | Msa1413860:CDS | 50.0% |
| !! | TTAGGTTCTGGGCAGTTCTC+AGG | + | tig0024068:77894-77913 | None:intergenic | 50.0% |
| !! | TGCAGTCGAAGGGTGTTTGA+GGG | + | tig0024068:77982-78001 | None:intergenic | 50.0% |
| AAAGCGACCAAGAGAATCCG+AGG | - | tig0024068:78109-78128 | Msa1413860:CDS | 50.0% | |
| ! | TGCTATTGCTGCTGCTTCCT+CGG | + | tig0024068:78129-78148 | None:intergenic | 50.0% |
| ! | TCGGTGGGTAGTGGTAAAAG+AGG | - | tig0024068:78341-78360 | Msa1413860:CDS | 50.0% |
| GGTTTACGGTAAGAGAGGGA+AGG | - | tig0024068:78460-78479 | Msa1413860:CDS | 50.0% | |
| !! | GGGAAGGTATCAAAGAGGGA+AGG | - | tig0024068:78476-78495 | Msa1413860:CDS | 50.0% |
| ! | AGAGGGAAGGTACAAGGGAA+AGG | - | tig0024068:78489-78508 | Msa1413860:CDS | 50.0% |
| ! | ACTGGATTTGAGGCTCATGC+TGG | - | tig0024068:78659-78678 | Msa1413860:CDS | 50.0% |
| ! | AGGCTCATGCTGGTTGTACA+AGG | - | tig0024068:78669-78688 | Msa1413860:CDS | 50.0% |
| GGAAGACGGAAGGTCATTGT+TGG | - | tig0024068:78718-78737 | Msa1413860:CDS | 50.0% | |
| CAAACGAGGTGGAATGCAGA+AGG | + | tig0024068:78941-78960 | None:intergenic | 50.0% | |
| GCATTCCACCTCGTTTGCTT+AGG | - | tig0024068:78944-78963 | Msa1413860:CDS | 50.0% | |
| GATCGAGACCTAAGCAAACG+AGG | + | tig0024068:78955-78974 | None:intergenic | 50.0% | |
| ! | GGTTGCCGAGATAGTTTTCG+TGG | - | tig0024068:79543-79562 | Msa1413860:CDS | 50.0% |
| !!! | CTTGGTTTTGCATTCCTCCG+AGG | - | tig0024068:79654-79673 | Msa1413860:CDS | 50.0% |
| CCACGTGTCTATAGCATCCT+CGG | + | tig0024068:79674-79693 | None:intergenic | 50.0% | |
| !! | GACACGTGGACAAAAGCGTT+TGG | - | tig0024068:79685-79704 | Msa1413860:CDS | 50.0% |
| !! | CTGCAGTCGAAGGGTGTTTG+AGG | + | tig0024068:77983-78002 | None:intergenic | 55.0% |
| !! | CTACTGGTGCTGCAGTCGAA+GGG | + | tig0024068:77992-78011 | None:intergenic | 55.0% |
| GCTGCTTCCTCGGATTCTCT+TGG | + | tig0024068:78119-78138 | None:intergenic | 55.0% | |
| CGAGACCTAAGCAAACGAGG+TGG | + | tig0024068:78952-78971 | None:intergenic | 55.0% | |
| GGTCTCGATCAAGTTCCGGA+TGG | - | tig0024068:78965-78984 | Msa1413860:CDS | 55.0% | |
| CGTGTCTATAGCATCCTCGG+AGG | + | tig0024068:79671-79690 | None:intergenic | 55.0% | |
| CCGAGGATGCTATAGACACG+TGG | - | tig0024068:79671-79690 | Msa1413860:CDS | 55.0% | |
| !! | CTGCAGTCGAAGGGTGTTTG+AGG | + | tig0024068:77983-78002 | None:intergenic | 55.0% |
| !! | CTACTGGTGCTGCAGTCGAA+GGG | + | tig0024068:77992-78011 | None:intergenic | 55.0% |
| GCTGCTTCCTCGGATTCTCT+TGG | + | tig0024068:78119-78138 | None:intergenic | 55.0% | |
| CGAGACCTAAGCAAACGAGG+TGG | + | tig0024068:78952-78971 | None:intergenic | 55.0% | |
| GGTCTCGATCAAGTTCCGGA+TGG | - | tig0024068:78965-78984 | Msa1413860:CDS | 55.0% | |
| CGTGTCTATAGCATCCTCGG+AGG | + | tig0024068:79671-79690 | None:intergenic | 55.0% | |
| CCGAGGATGCTATAGACACG+TGG | - | tig0024068:79671-79690 | Msa1413860:CDS | 55.0% | |
| !! | GCTACTGGTGCTGCAGTCGA+AGG | + | tig0024068:77993-78012 | None:intergenic | 60.0% |
| !! | GCTACTGGTGCTGCAGTCGA+AGG | + | tig0024068:77993-78012 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024068 | gene | 77852 | 79828 | 77852 | ID=Msa1413860;Name=Msa1413860 |
| tig0024068 | mRNA | 77852 | 79828 | 77852 | ID=Msa1413860-mRNA-1;Parent=Msa1413860;Name=Msa1413860-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|658 |
| tig0024068 | exon | 77852 | 79828 | 77852 | ID=Msa1413860-mRNA-1:exon:21422;Parent=Msa1413860-mRNA-1 |
| tig0024068 | CDS | 77852 | 79828 | 77852 | ID=Msa1413860-mRNA-1:cds;Parent=Msa1413860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
