AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382940 MtrunA17_Chr3g0138311 98.218 505 1 1 1 505 401 897 0.0 1026
Msa0382940 MtrunA17_Chr1g0148791 83.203 512 61 7 1 505 409 902 0.0 777
Msa0382940 MtrunA17_Chr1g0171711 56.221 434 163 7 82 505 370 786 3.45e-164 484
Msa0382940 MtrunA17_Chr7g0237271 50.812 431 180 9 85 505 376 784 1.06e-139 421
Msa0382940 MtrunA17_Chr7g0237241 50.348 431 182 9 85 505 367 775 6.64e-137 414
Msa0382940 MtrunA17_Chr4g0062881 47.696 434 177 11 77 505 69 457 2.00e-121 363
Msa0382940 MtrunA17_Chr2g0282401 47.813 343 156 5 176 505 456 788 1.54e-99 317
Msa0382940 MtrunA17_Chr4g0047051 40.000 285 159 4 224 505 33 308 5.19e-65 213
Msa0382940 MtrunA17_Chr4g0047071 39.863 291 152 8 227 505 3 282 7.98e-62 204
Msa0382940 MtrunA17_Chr4g0047091 37.801 291 167 6 219 505 86 366 1.42e-57 195
Msa0382940 MtrunA17_Chr4g0047061 39.313 262 145 6 247 505 80 330 9.73e-52 179
Msa0382940 MtrunA17_Chr4g0047101 38.776 245 133 5 218 457 23 255 1.10e-42 152
Msa0382940 MtrunA17_Chr4g0047111 38.710 155 70 3 305 457 7 138 2.40e-26 104
Msa0382940 MtrunA17_Chr5g0405851 25.664 339 210 11 194 504 125 449 5.18e-22 99.0
Msa0382940 MtrunA17_Chr1g0172501 26.073 303 203 9 209 504 264 552 5.78e-22 99.4
Msa0382940 MtrunA17_Chr3g0093681 25.743 303 204 9 209 504 264 552 3.11e-21 97.1
Msa0382940 MtrunA17_Chr6g0448921 27.407 270 182 10 219 478 14 279 1.46e-19 92.4
Msa0382940 MtrunA17_Chr1g0163021 67.797 59 13 2 395 447 25 83 2.21e-19 83.6
Msa0382940 MtrunA17_Chr4g0053651 23.529 323 207 12 212 504 221 533 1.72e-16 82.4
Msa0382940 MtrunA17_Chr1g0185501 25.597 293 152 10 224 504 30 268 3.40e-16 79.7
Msa0382940 MtrunA17_Chr1g0185501 23.585 212 150 6 214 415 104 313 9.04e-13 69.3
Msa0382940 MtrunA17_Chr5g0401661 22.561 328 212 12 209 504 323 640 3.75e-16 81.6
Msa0382940 MtrunA17_Chr5g0401661 27.753 227 143 9 224 434 440 661 6.06e-14 74.7
Msa0382940 MtrunA17_Chr3g0136971 29.146 199 133 6 221 414 419 614 6.58e-16 80.9
Msa0382940 MtrunA17_Chr3g0136971 33.553 152 96 3 229 377 469 618 5.29e-15 77.8
Msa0382940 MtrunA17_Chr2g0281451 25.991 227 158 8 219 438 13 236 5.97e-15 78.2
Msa0382940 MtrunA17_Chr4g0067151 28.054 221 146 7 229 439 86 303 1.00e-14 75.5
Msa0382940 MtrunA17_Chr4g0067151 24.891 229 157 7 197 415 99 322 2.38e-14 74.3
Msa0382940 MtrunA17_Chr4g0067151 27.376 263 166 9 259 504 23 277 8.98e-14 72.4
Msa0382940 MtrunA17_Chr4g0067151 24.252 301 199 12 224 504 30 321 1.39e-13 72.0
Msa0382940 MtrunA17_Chr4g0004241 23.474 213 141 4 216 414 52 256 1.38e-14 76.6
Msa0382940 MtrunA17_Chr2g0331981 23.005 213 142 4 216 414 52 256 1.42e-14 76.6
Msa0382940 MtrunA17_Chr1g0168391 28.342 187 128 3 235 416 238 423 2.37e-14 75.5
Msa0382940 MtrunA17_Chr1g0197551 28.272 191 122 5 227 416 57 233 1.01e-13 74.3
Msa0382940 MtrunA17_Chr4g0030281 58.824 68 1 1 261 328 593 633 1.14e-13 73.6
Msa0382940 MtrunA17_Chr2g0331961 21.801 211 159 3 210 414 48 258 2.44e-13 70.9
Msa0382940 MtrunA17_Chr1g0200901 28.326 233 151 6 193 417 98 322 5.46e-13 70.9
Msa0382940 MtrunA17_Chr7g0253861 22.635 296 206 9 222 503 56 342 8.29e-13 69.7
Msa0382940 MtrunA17_Chr8g0392701 26.991 226 132 10 235 438 30 244 2.04e-12 68.2
Msa0382940 MtrunA17_Chr4g0035611 26.178 191 126 5 227 416 57 233 2.38e-12 69.7
Msa0382940 MtrunA17_Chr5g0401671 28.488 172 110 4 214 374 423 592 2.83e-12 68.9
Msa0382940 MtrunA17_Chr4g0070791 27.092 251 150 10 276 504 31 270 6.29e-12 66.6
Msa0382940 MtrunA17_Chr4g0059031 30.952 126 85 2 217 342 496 619 7.73e-12 68.2
Msa0382940 MtrunA17_Chr4g0059031 25.258 194 129 5 235 414 462 653 1.48e-11 67.0
Msa0382940 MtrunA17_Chr4g0034491 25.210 238 151 8 278 505 34 254 8.47e-12 67.8
Msa0382940 MtrunA17_Chr8g0352821 22.295 305 214 11 209 504 174 464 1.17e-11 67.4
Msa0382940 MtrunA17_Chr1g0176241 23.973 292 171 10 257 504 113 397 2.10e-11 66.2
Msa0382940 MtrunA17_Chr2g0295791 23.109 238 174 7 206 438 115 348 4.36e-11 65.1
Msa0382940 MtrunA17_Chr3g0095501 24.653 288 197 10 228 504 277 555 6.59e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382940 AT4G32551.1 74.895 474 97 4 36 505 476 931 0.0 720
Msa0382940 AT4G32551.2 74.895 474 97 4 36 505 514 969 0.0 719
Msa0382940 AT2G32700.2 54.608 434 169 9 82 505 372 787 1.60e-157 468
Msa0382940 AT2G32700.5 54.608 434 169 9 82 505 372 787 1.60e-157 468
Msa0382940 AT2G32700.1 54.608 434 169 9 82 505 372 787 1.60e-157 468
Msa0382940 AT2G32700.4 54.608 434 169 9 82 505 372 787 1.60e-157 468
Msa0382940 AT2G32700.3 54.608 434 169 9 82 505 372 787 1.60e-157 468
Msa0382940 AT2G32700.7 54.608 434 169 9 82 505 391 806 2.17e-157 468
Msa0382940 AT2G32700.6 54.378 434 168 9 82 505 372 785 2.47e-156 464
Msa0382940 AT2G41500.1 26.667 285 192 8 227 504 261 535 2.67e-22 100
Msa0382940 AT2G41500.1 26.368 201 141 5 223 418 341 539 1.79e-12 70.1
Msa0382940 AT2G41500.2 26.667 285 192 8 227 504 261 535 2.67e-22 100
Msa0382940 AT2G41500.2 26.368 201 141 5 223 418 341 539 1.79e-12 70.1
Msa0382940 AT4G02730.1 27.575 301 163 9 211 504 33 285 5.98e-20 91.3
Msa0382940 AT5G23430.1 31.220 205 132 7 219 417 14 215 1.02e-19 93.2
Msa0382940 AT5G23430.3 31.220 205 132 7 219 417 14 215 1.03e-19 93.2
Msa0382940 AT5G23430.2 31.220 205 132 7 219 417 14 215 1.03e-19 93.2
Msa0382940 AT5G08390.1 30.244 205 134 7 219 417 14 215 1.57e-19 92.8
Msa0382940 AT1G61210.1 26.432 227 157 8 219 438 13 236 2.28e-17 86.3
Msa0382940 AT1G61210.1 24.167 240 167 7 205 435 81 314 1.17e-11 68.2
Msa0382940 AT1G61210.2 26.432 227 157 8 219 438 13 236 2.30e-17 86.3
Msa0382940 AT1G61210.2 24.167 240 167 7 205 435 81 314 1.15e-11 68.2
Msa0382940 AT1G61210.3 26.432 227 157 8 219 438 13 236 2.51e-17 85.9
Msa0382940 AT1G61210.3 24.167 240 167 7 205 435 81 314 9.04e-12 68.6
Msa0382940 AT2G33340.2 31.414 191 119 6 235 416 236 423 1.41e-16 82.8
Msa0382940 AT2G33340.1 31.414 191 119 6 235 416 236 423 1.41e-16 82.8
Msa0382940 AT3G49660.1 23.051 295 204 9 224 504 27 312 1.53e-16 80.9
Msa0382940 AT3G49660.1 25.974 231 158 7 197 419 92 317 7.20e-14 73.2
Msa0382940 AT2G33340.3 31.414 191 119 6 235 416 236 423 1.69e-16 82.4
Msa0382940 AT5G67320.1 25.455 330 192 9 212 504 256 568 4.37e-16 81.6
Msa0382940 AT1G11160.1 25.551 227 159 8 219 438 13 236 7.33e-16 81.3
Msa0382940 AT1G11160.4 25.551 227 159 8 219 438 13 236 8.96e-16 81.3
Msa0382940 AT1G11160.2 25.551 227 159 8 219 438 13 236 9.36e-16 80.9
Msa0382940 AT2G43770.1 22.945 292 210 6 222 503 54 340 1.17e-15 79.0
Msa0382940 AT2G43770.1 25.098 255 171 10 217 457 92 340 6.97e-13 70.5
Msa0382940 AT5G25150.1 28.643 199 134 6 221 414 418 613 1.60e-15 80.1
Msa0382940 AT5G25150.2 28.643 199 134 6 221 414 418 613 1.86e-15 79.7
Msa0382940 AT3G15980.7 23.944 213 140 4 216 414 52 256 7.61e-15 78.2
Msa0382940 AT1G52360.4 23.474 213 141 4 216 414 52 256 7.86e-15 78.2
Msa0382940 AT1G52360.1 23.474 213 141 4 216 414 52 256 7.86e-15 78.2
Msa0382940 AT3G15980.3 23.944 213 140 4 216 414 52 256 8.17e-15 77.8
Msa0382940 AT3G15980.6 23.944 213 140 4 216 414 52 256 8.17e-15 77.8
Msa0382940 AT3G15980.2 23.944 213 140 4 216 414 52 256 8.17e-15 77.8
Msa0382940 AT3G15980.4 23.944 213 140 4 216 414 52 256 8.17e-15 77.8
Msa0382940 AT3G15980.1 23.944 213 140 4 216 414 52 256 8.42e-15 77.8
Msa0382940 AT3G15980.5 23.944 213 140 4 216 414 52 256 8.82e-15 77.8
Msa0382940 AT1G52360.3 23.474 213 141 4 216 414 52 256 9.42e-15 77.8
Msa0382940 AT1G52360.2 24.500 200 129 4 229 414 109 300 1.17e-14 77.4
Msa0382940 AT1G04510.1 29.474 190 125 5 235 416 236 424 1.26e-13 73.6
Msa0382940 AT1G04510.2 29.474 190 125 5 235 416 236 424 1.28e-13 73.6
Msa0382940 AT1G79990.1 22.791 215 144 4 214 414 50 256 1.69e-13 73.9
Msa0382940 AT1G79990.2 22.791 215 144 4 214 414 50 256 1.74e-13 73.9
Msa0382940 AT1G71840.1 23.891 293 202 7 224 505 116 398 1.75e-13 72.8
Msa0382940 AT1G18080.1 27.727 220 139 9 235 438 30 245 5.02e-13 70.5
Msa0382940 AT2G21390.1 28.125 192 121 7 227 416 57 233 1.05e-12 71.2
Msa0382940 AT1G62020.1 27.602 221 125 7 227 414 57 275 1.34e-12 71.2
Msa0382940 AT4G15900.1 24.490 196 140 6 248 438 162 354 8.05e-12 67.8
Msa0382940 AT5G13480.1 24.125 257 158 7 209 436 155 403 8.43e-12 68.2
Msa0382940 AT5G13480.1 22.549 306 212 10 209 504 114 404 3.98e-11 65.9
Msa0382940 AT4G29830.1 26.506 249 150 10 278 504 33 270 8.85e-12 66.6
Msa0382940 AT5G16750.1 33.333 108 70 2 235 342 513 618 8.91e-12 68.2
Msa0382940 AT5G16750.1 27.000 200 134 6 215 405 54 250 1.35e-11 67.8
Msa0382940 AT5G13480.3 23.715 253 164 6 209 436 143 391 9.10e-12 68.2
Msa0382940 AT5G13480.4 23.715 253 164 6 209 436 143 391 9.16e-12 68.2
Msa0382940 AT5G13480.4 22.549 306 212 10 209 504 102 392 4.45e-11 65.9
Msa0382940 AT5G13480.2 23.938 259 160 7 207 436 164 414 1.06e-11 67.8
Msa0382940 AT3G18130.1 26.244 221 140 9 235 438 30 244 1.46e-11 66.2
Msa0382940 AT5G43920.1 24.183 306 208 12 214 504 217 513 2.07e-11 66.6

Find 230 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATAAGATCATCTTTATT+TGG 0.065820 3_1:-85727696 None:intergenic
GGATCATTGTTAGGAATTTC+TGG 0.201289 3_1:+85723693 Msa0382940:five_prime_UTR
GCAGCTGGTGGTCAGCCTTC+AGG 0.211841 3_1:+85723207 Msa0382940:five_prime_UTR
TTCAATATTGAGGCATGATT+TGG 0.222066 3_1:-85723177 None:intergenic
ACCCACCGCCTCCACTCTTT+TGG 0.240322 3_1:+85728778 Msa0382940:three_prime_UTR
CAACCATGTCTCAAACTAAC+TGG 0.250472 3_1:+85721588 Msa0382940:five_prime_UTR
TTGAAAGGCCATCCTTATTT+AGG 0.266930 3_1:-85724202 None:intergenic
CAGCTGGTGGTCAGCCTTCA+GGG 0.269946 3_1:+85723208 Msa0382940:five_prime_UTR
CAAAGTTCGAATATTGTAAA+TGG 0.281413 3_1:-85728919 None:intergenic
CTTCTGAATAATAGGAATAT+TGG 0.288773 3_1:+85724179 Msa0382940:five_prime_UTR
CTCTTAAATGGTAGCGCAAA+TGG 0.294488 3_1:+85722924 Msa0382940:five_prime_UTR
TTGGCGGTTTCAACTGTAAA+TGG 0.301887 3_1:+85728591 Msa0382940:CDS
TGAGAATGCTTCTGAATAAT+AGG 0.303232 3_1:+85724171 Msa0382940:five_prime_UTR
ATGTAATGCAGGCTGTTATA+TGG 0.307030 3_1:+85726747 Msa0382940:intron
GGCTGAGGAGCCTGCATATA+AGG 0.310194 3_1:-85724047 None:intergenic
GATAGGGCTCATCTCTTAAA+TGG 0.312174 3_1:+85722912 Msa0382940:five_prime_UTR
GTTTGAGACATGGTTGAAAA+AGG 0.313668 3_1:-85721581 None:intergenic
TAGGAATATTGGCCTAAATA+AGG 0.314773 3_1:+85724190 Msa0382940:five_prime_UTR
TCGACAAAACTGTCAGGGTT+TGG 0.315809 3_1:+85726873 Msa0382940:CDS
GCCGTTCCTGAACTATTTGC+AGG 0.317851 3_1:-85725441 None:intergenic
CGACAAAACTGTCAGGGTTT+GGG 0.331128 3_1:+85726874 Msa0382940:CDS
TCCTTCAGGACCCGCAGCTC+TGG 0.334645 3_1:-85723673 None:intergenic
ATATAAGATCATCTTTATTT+GGG 0.338718 3_1:-85727695 None:intergenic
GCTTTCTCTTTCTTCCCATC+TGG 0.344539 3_1:-85725398 None:intergenic
TTTGTATGTGTAGTTGAAAC+TGG 0.360749 3_1:+85724450 Msa0382940:intron
GCTATTGCATTAGCAGTTGC+CGG 0.366121 3_1:-85722960 None:intergenic
GTGAGGACTCTGTCAGGATT+TGG 0.366793 3_1:+85728271 Msa0382940:CDS
GGCATGCCGATATTCATTAA+AGG 0.372801 3_1:+85728031 Msa0382940:CDS
ATGTATGAGGAAAGGTTAAA+AGG 0.381721 3_1:+85722990 Msa0382940:five_prime_UTR
GGATCCATCGGGAGAATTGC+TGG 0.381986 3_1:+85728239 Msa0382940:CDS
TCGGGTCCTGCAAATAGTTC+AGG 0.382571 3_1:+85725435 Msa0382940:CDS
GCAGAAGTAGATGAAGAGTT+TGG 0.385208 3_1:-85721512 None:intergenic
GACGAGGTTGAAATCTCATC+TGG 0.387712 3_1:-85727947 None:intergenic
GTATGAGTTGAGGGAGTTGA+GGG 0.393882 3_1:-85725495 None:intergenic
CCCTCTTAACAAGGTAATCA+TGG 0.394159 3_1:-85721950 None:intergenic
GACAATAGATTCTGTATGTT+GGG 0.395558 3_1:+85728218 Msa0382940:CDS
AAGTGGTGGCCATGACAAAA+AGG 0.396352 3_1:+85726563 Msa0382940:CDS
AAAGCAACCGGTATCTTCTT+CGG 0.398253 3_1:+85725416 Msa0382940:CDS
TGTTGTTGTGGTTGTGGTTG+TGG 0.400127 3_1:-85722879 None:intergenic
TTCCCTTCACTGCTCGTCAT+TGG 0.404238 3_1:+85728369 Msa0382940:CDS
ATTCCTAACAATGATCCTTC+AGG 0.412068 3_1:-85723687 None:intergenic
AACAACAATTTGACTTTGAA+AGG 0.413556 3_1:+85723842 Msa0382940:five_prime_UTR
GGCTGCTGCGGCTGCGATTG+TGG 0.414076 3_1:-85722858 None:intergenic
AACAACAGCAAAATAGAGAT+AGG 0.415075 3_1:+85722895 Msa0382940:five_prime_UTR
AGTATGAGTTGAGGGAGTTG+AGG 0.417532 3_1:-85725496 None:intergenic
CAGTTGTGTTAGAGTCTCTA+AGG 0.417904 3_1:+85727767 Msa0382940:CDS
AAGCAACCGGTATCTTCTTC+GGG 0.418059 3_1:+85725417 Msa0382940:CDS
TCCATGATTACCTTGTTAAG+AGG 0.419410 3_1:+85721949 Msa0382940:five_prime_UTR
AGAGAGTAAAAGAGAAATGA+AGG 0.432806 3_1:-85721444 None:intergenic
TCAGTGCTAAACATCATTAG+AGG 0.437472 3_1:-85725573 None:intergenic
CAACTCACCAACTGGTTTGA+AGG 0.438265 3_1:-85725618 None:intergenic
TGATGGTTTAATTACTGCCT+TGG 0.438872 3_1:+85728572 Msa0382940:CDS
ACGACAAGTTCATCAAGCTT+TGG 0.441767 3_1:+85728634 Msa0382940:CDS
CACCTCCGAGTGCTTCTCAT+TGG 0.442657 3_1:-85722241 None:intergenic
GTCAGGATTTGGACTCTTGA+AGG 0.442934 3_1:+85728282 Msa0382940:CDS
TCAATATTGAGGCATGATTT+GGG 0.442975 3_1:-85723176 None:intergenic
TGAGAACATGGGTCAGCTCT+TGG 0.447717 3_1:+85723152 Msa0382940:five_prime_UTR
TTTGAAGAACTACTATTATG+AGG 0.452165 3_1:-85725549 None:intergenic
GGTCCTGAAGGATCATTGTT+AGG 0.452925 3_1:+85723684 Msa0382940:five_prime_UTR
TAGTTCAGGAACGGCAAATA+CGG 0.454165 3_1:+85725449 Msa0382940:CDS
ATCAGATGAGAAATGGCAAC+AGG 0.462338 3_1:-85726526 None:intergenic
TGGTTTAATTACTGCCTTGG+CGG 0.462707 3_1:+85728575 Msa0382940:CDS
TTCTGTATGTTGGGATCCAT+CGG 0.462819 3_1:+85728227 Msa0382940:CDS
CTGCCAGTGAAGAAAGTAGA+AGG 0.462904 3_1:+85724147 Msa0382940:five_prime_UTR
CAGCCTTCTACTTTCTTCAC+TGG 0.466524 3_1:-85724150 None:intergenic
AGACAATAGATTCTGTATGT+TGG 0.466596 3_1:+85728217 Msa0382940:CDS
AATGTTGGATCACCTCTTCA+TGG 0.466607 3_1:+85724248 Msa0382940:five_prime_UTR
GGTAGCGCAAATGGGTTAGC+TGG 0.466716 3_1:+85722933 Msa0382940:five_prime_UTR
ATCTGTATCTCCACGGGGAA+AGG 0.470992 3_1:-85724281 None:intergenic
TGCTGTGACTGCTGAGGTTG+AGG 0.471903 3_1:-85722744 None:intergenic
TTTGTGCCAGGATCAAATCA+AGG 0.472333 3_1:+85723818 Msa0382940:intron
CTGTGAGTGAGGACTCTGTC+AGG 0.473083 3_1:+85728265 Msa0382940:CDS
CTTCATTCGACAAAACTGTC+AGG 0.474156 3_1:+85726867 Msa0382940:CDS
GCAGCTCTGGGATTTAAAAC+CGG 0.474188 3_1:-85723660 None:intergenic
TGATAAGGATCTTGAATTGA+AGG 0.475846 3_1:+85725724 Msa0382940:CDS
CTTGATGAACTTGTCGTGAC+TGG 0.476097 3_1:-85728628 None:intergenic
TGTTGCCATTTCTCATCTGA+TGG 0.476232 3_1:+85726528 Msa0382940:CDS
CTACTTTCTTCACTGGCAGA+TGG 0.477409 3_1:-85724143 None:intergenic
AGATCCTGTTGGCCGTTGTA+TGG 0.479819 3_1:+85725829 Msa0382940:CDS
CCTTCAGGACCCGCAGCTCT+GGG 0.479942 3_1:-85723672 None:intergenic
GCTCGTAGTCAGCAACTACC+AGG 0.480624 3_1:+85723523 Msa0382940:five_prime_UTR
GTTCATGAGCTTAGCTGTAA+TGG 0.482292 3_1:+85728312 Msa0382940:CDS
ATTGCAGCTATTGATGCTCC+TGG 0.482548 3_1:+85722165 Msa0382940:intron
GGTTTGGAGCAACTTCGCTC+TGG 0.483401 3_1:+85724005 Msa0382940:five_prime_UTR
GGCTGATGTGGATCGCTTTG+TGG 0.483591 3_1:+85725745 Msa0382940:CDS
AATTAATCCAAGCTGAGTTC+AGG 0.485969 3_1:+85728851 Msa0382940:three_prime_UTR
AATAAAGACGTGGACTTGCC+TGG 0.486850 3_1:-85728398 None:intergenic
CTACTATTATGAGGCAAAGC+AGG 0.494245 3_1:-85725540 None:intergenic
TCAGGATTTGGACTCTTGAA+GGG 0.495748 3_1:+85728283 Msa0382940:CDS
TTTGGATGACGCAGCAATGA+AGG 0.495789 3_1:+85723031 Msa0382940:five_prime_UTR
ACATCCATACAACGGCCAAC+AGG 0.497907 3_1:-85725833 None:intergenic
GCAGCAAAAGCCTTATATGC+AGG 0.497961 3_1:+85724037 Msa0382940:five_prime_UTR
AGGATGGCCTTTCAAACCCT+GGG 0.498402 3_1:+85724210 Msa0382940:five_prime_UTR
CTAATGATGTTTAGCACTGA+TGG 0.498844 3_1:+85725576 Msa0382940:CDS
CATAAAGAGTGAGATAAATC+CGG 0.499438 3_1:+85723641 Msa0382940:five_prime_UTR
TATGCTGTACAGCAAAGATT+TGG 0.504149 3_1:+85723129 Msa0382940:intron
TCTCCAGGAGTATGAGTTGA+GGG 0.506142 3_1:-85725504 None:intergenic
ATGACTTTGTCTGCTCATGA+TGG 0.507469 3_1:+85728555 Msa0382940:CDS
TAGCATATCTGTATCTCCAC+GGG 0.507683 3_1:-85724287 None:intergenic
CTTTGGAAGTAACTAACATA+AGG 0.508508 3_1:+85728651 Msa0382940:exon
CCATGATTACCTTGTTAAGA+GGG 0.510376 3_1:+85721950 Msa0382940:five_prime_UTR
ACAACAATTTGACTTTGAAA+GGG 0.512235 3_1:+85723843 Msa0382940:five_prime_UTR
GGATCACCTCTTCATGGCGG+TGG 0.513287 3_1:+85724254 Msa0382940:five_prime_UTR
GCAAAGATTTGGTGAGAACA+TGG 0.513679 3_1:+85723140 Msa0382940:intron
GTCCAAAAGAGTGGAGGCGG+TGG 0.515293 3_1:-85728780 None:intergenic
CTCATATCGAGGAAATGATC+AGG 0.515609 3_1:+85724660 Msa0382940:CDS
GGCATTGAAACAGCATCTCC+AGG 0.515902 3_1:-85725519 None:intergenic
GTGGCATGCTTGCACTGAAA+CGG 0.517376 3_1:-85726832 None:intergenic
CAACCAATGACGAGCAGTGA+AGG 0.518554 3_1:-85728372 None:intergenic
GGGAAGAAAGAGAAAGCAAC+CGG 0.518811 3_1:+85725404 Msa0382940:CDS
AATAGCAACAAAGATGTATG+AGG 0.521157 3_1:+85722977 Msa0382940:five_prime_UTR
GCTCGTCATTGGTTGTTACC+AGG 0.524683 3_1:+85728380 Msa0382940:CDS
TCTTAAATGGTAGCGCAAAT+GGG 0.525075 3_1:+85722925 Msa0382940:five_prime_UTR
ACTCCCTCAACTCATACTCC+TGG 0.525867 3_1:+85725501 Msa0382940:CDS
TGCACCAGCAAGATAAGGTA+GGG 0.526080 3_1:+85724596 Msa0382940:CDS
ACAATACTCGCGATACAGTC+AGG 0.527168 3_1:+85728692 Msa0382940:three_prime_UTR
AACATTTGTAGTTGATGAAA+CGG 0.527598 3_1:-85724068 None:intergenic
ATGAGATTTCAACCTCGTCT+AGG 0.533516 3_1:+85727951 Msa0382940:CDS
CTTTCAAATCCCTCTTAACA+AGG 0.536686 3_1:-85721959 None:intergenic
ATGTTTAGCACTGATGGTAC+TGG 0.538876 3_1:+85725582 Msa0382940:CDS
ATATTGAAGTCAGCTGCAGC+TGG 0.539698 3_1:+85723192 Msa0382940:five_prime_UTR
CCCAGAGCTGCGGGTCCTGA+AGG 0.540779 3_1:+85723672 Msa0382940:five_prime_UTR
CTATTGCATTAGCAGTTGCC+GGG 0.541486 3_1:-85722959 None:intergenic
CATCGTGTCTATACTTGATG+TGG 0.541488 3_1:+85728001 Msa0382940:CDS
CAATGAGAAGCACTCGGAGG+TGG 0.544235 3_1:+85722242 Msa0382940:five_prime_UTR
AAGGATGGCCTTTCAAACCC+TGG 0.546368 3_1:+85724209 Msa0382940:five_prime_UTR
TCAGGAACGGCAAATACGGC+AGG 0.546613 3_1:+85725453 Msa0382940:CDS
TGCAGCTGACTTCAATATTG+AGG 0.547077 3_1:-85723187 None:intergenic
GTGTAGAAGGTGTTGGATGA+TGG 0.547218 3_1:-85721553 None:intergenic
TGAGATTTCAACCTCGTCTA+GGG 0.547964 3_1:+85727952 Msa0382940:CDS
GCAGGACCCGAAGAAGATAC+CGG 0.549009 3_1:-85725423 None:intergenic
CAACGGCCAACAGGATCTCT+AGG 0.552220 3_1:-85725824 None:intergenic
TTCATTCGACAAAACTGTCA+GGG 0.553440 3_1:+85726868 Msa0382940:CDS
GTGGATCGCTTTGTGGACGA+TGG 0.553830 3_1:+85725752 Msa0382940:CDS
TATGCAGACTCAATTAATCA+AGG 0.554395 3_1:+85722683 Msa0382940:intron
TGTATCTCCACGGGGAAAGG+AGG 0.555404 3_1:-85724278 None:intergenic
TACATCACCTTCAAACCAGT+TGG 0.556639 3_1:+85725611 Msa0382940:CDS
GGTGGCTGCATCATATATAG+AGG 0.557327 3_1:+85722260 Msa0382940:five_prime_UTR
ACGAGCAGTGAAGGGAATGT+TGG 0.559129 3_1:-85728363 None:intergenic
ATGAGTTGAGGGAGTTGAGG+GGG 0.560911 3_1:-85725493 None:intergenic
TAGCATGCACCAGCAAGATA+AGG 0.561666 3_1:+85724591 Msa0382940:CDS
TGCGCATGCTGTGACTGCTG+AGG 0.561774 3_1:-85722750 None:intergenic
AGGTGGTGGTAGTGTCACCA+TGG 0.562183 3_1:+85724621 Msa0382940:CDS
GTATCGCGAGTATTGTCAAT+CGG 0.564534 3_1:-85728685 None:intergenic
ACAATTTGACTTTGAAAGGG+TGG 0.565454 3_1:+85723846 Msa0382940:five_prime_UTR
AAGTCTACCTGAACTCAGCT+TGG 0.565977 3_1:-85728858 None:intergenic
AACCAATGACGAGCAGTGAA+GGG 0.566783 3_1:-85728371 None:intergenic
AAAGTATCATCTGACCCTGT+TGG 0.567966 3_1:+85722011 Msa0382940:five_prime_UTR
GTCATTGGAGCTGTGGAACA+TGG 0.570092 3_1:+85728518 Msa0382940:intron
CATCCAAAGAATCCCTCTGT+GGG 0.570844 3_1:-85723016 None:intergenic
TTGTGCCAGGATCAAATCAA+GGG 0.571058 3_1:+85723819 Msa0382940:intron
TATGAGTTGAGGGAGTTGAG+GGG 0.574119 3_1:-85725494 None:intergenic
TCTTGAATTGAAGGCTGATG+TGG 0.574684 3_1:+85725733 Msa0382940:CDS
GGAGGGCCACCGCCATGAAG+AGG 0.575836 3_1:-85724260 None:intergenic
AAATGGGTTAGCTGGAAACC+CGG 0.578315 3_1:+85722941 Msa0382940:five_prime_UTR
AACGTTGCATTACATTACAT+AGG 0.582212 3_1:-85728806 None:intergenic
CAACAAAGATGTATGAGGAA+AGG 0.582289 3_1:+85722982 Msa0382940:five_prime_UTR
ATGCACCAGCAAGATAAGGT+AGG 0.584371 3_1:+85724595 Msa0382940:CDS
ACAACAGCAAAATAGAGATA+GGG 0.585250 3_1:+85722896 Msa0382940:five_prime_UTR
TCTGTATGTTGGGATCCATC+GGG 0.588620 3_1:+85728228 Msa0382940:CDS
GACTCAATTAATCAAGGCAA+GGG 0.589226 3_1:+85722689 Msa0382940:intron
AAATGATCACGTACTGTGAG+TGG 0.589381 3_1:-85723869 None:intergenic
AGATACAGATATGCTAATGA+AGG 0.589638 3_1:+85724294 Msa0382940:exon
AATATTGGCCTAAATAAGGA+TGG 0.589670 3_1:+85724194 Msa0382940:five_prime_UTR
GTATCTCCACGGGGAAAGGA+GGG 0.590072 3_1:-85724277 None:intergenic
GGTGACATGTTATCGAATGT+TGG 0.590892 3_1:+85724233 Msa0382940:five_prime_UTR
TGTAGTTGATGAAACGGCTG+AGG 0.591774 3_1:-85724062 None:intergenic
CAGGATTTGGACTCTTGAAG+GGG 0.592600 3_1:+85728284 Msa0382940:CDS
GCAGTGAAGGGAATGTTGGA+TGG 0.593172 3_1:-85728359 None:intergenic
GGTGGTAGTGTCACCATGGA+TGG 0.593565 3_1:+85724625 Msa0382940:CDS
ATCTCCAGGAGTATGAGTTG+AGG 0.594181 3_1:-85725505 None:intergenic
CACTCAAACAGAAAACCTCC+AGG 0.595072 3_1:-85722183 None:intergenic
TCCTGCAAATAGTTCAGGAA+CGG 0.598491 3_1:+85725440 Msa0382940:CDS
TGGATCGCTTTGTGGACGAT+GGG 0.599275 3_1:+85725753 Msa0382940:CDS
TTCCCAGTTAGTTTGAGACA+TGG 0.601725 3_1:-85721591 None:intergenic
AACCATGTCTCAAACTAACT+GGG 0.603782 3_1:+85721589 Msa0382940:five_prime_UTR
GTTTGACATGCTGCCATCCA+TGG 0.604630 3_1:-85724638 None:intergenic
TTAGTCCAAAAGAGTGGAGG+CGG 0.605487 3_1:-85728783 None:intergenic
AGACTCAATTAATCAAGGCA+AGG 0.605620 3_1:+85722688 Msa0382940:intron
TTAGCATATCTGTATCTCCA+CGG 0.610660 3_1:-85724288 None:intergenic
ATATGTTCGTGTGATGGTGA+TGG 0.610859 3_1:+85727714 Msa0382940:CDS
TGACTACGAGCTTGAACTTG+TGG 0.613035 3_1:-85723511 None:intergenic
GGTGACCGTGTAGAAGGTGT+TGG 0.613103 3_1:-85721560 None:intergenic
GATGCCAGCAATTCTCCCGA+TGG 0.613289 3_1:-85728243 None:intergenic
CATAGGTTAGTCCAAAAGAG+TGG 0.615725 3_1:-85728789 None:intergenic
TTGAAGTCAGCTGCAGCTGG+TGG 0.619431 3_1:+85723195 Msa0382940:five_prime_UTR
GATCTTATATGTTCGTGTGA+TGG 0.621408 3_1:+85727708 Msa0382940:CDS
ACGAGGTTGAAATCTCATCT+GGG 0.623795 3_1:-85727946 None:intergenic
GCAGCTATTGATGCTCCTGG+AGG 0.625054 3_1:+85722168 Msa0382940:intron
TTGTGTAGTCATTGGAGCTG+TGG 0.626523 3_1:+85728511 Msa0382940:intron
GGTTGTGGTTGTGGCTGCTG+CGG 0.628420 3_1:-85722870 None:intergenic
ATCATCCAACACCTTCTACA+CGG 0.632839 3_1:+85721555 Msa0382940:five_prime_UTR
ATAAGCTGTTGCTGATGCTG+TGG 0.633531 3_1:-85724095 None:intergenic
GTGATGGTGAGATACGGTAT+TGG 0.634594 3_1:+85727730 Msa0382940:CDS
TATACTTGATGTGGAAACAC+AGG 0.635213 3_1:+85728010 Msa0382940:CDS
TCCAAAAGAGTGGAGGCGGT+GGG 0.635542 3_1:-85728779 None:intergenic
GCACCAGCAAGATAAGGTAG+GGG 0.636793 3_1:+85724597 Msa0382940:CDS
CAAAGATTTGGTGAGAACAT+GGG 0.639604 3_1:+85723141 Msa0382940:five_prime_UTR
ATTGCTGGCATCTGTGAGTG+AGG 0.640756 3_1:+85728254 Msa0382940:CDS
TCCAAAGAATCCCTCTGTGG+GGG 0.642699 3_1:-85723014 None:intergenic
AATGAAGATGTTGCTAGACG+TGG 0.645026 3_1:-85726851 None:intergenic
CGGTGGCCCTCCTTTCCCCG+TGG 0.648248 3_1:+85724271 Msa0382940:five_prime_UTR
GTGATGGTGATGGTGAGATA+CGG 0.649915 3_1:+85727724 Msa0382940:CDS
GATGGAAAATTACTTGCAAG+TGG 0.651402 3_1:+85726546 Msa0382940:CDS
AGGTGTACCGGTGTAGACCC+TGG 0.655843 3_1:-85723541 None:intergenic
CACCAGCAAGATAAGGTAGG+GGG 0.660685 3_1:+85724598 Msa0382940:CDS
GCAGGCTGTTATATGGTATG+CGG 0.663868 3_1:+85726754 Msa0382940:intron
GGAAAATTACTTGCAAGTGG+TGG 0.669872 3_1:+85726549 Msa0382940:CDS
GCAAGGTACCTCCCTAGACG+AGG 0.669924 3_1:-85727963 None:intergenic
AGCATGTCAAACTCATATCG+AGG 0.671384 3_1:+85724649 Msa0382940:CDS
AGGTTAGTCCAAAAGAGTGG+AGG 0.672044 3_1:-85728786 None:intergenic
TCATCCAAAGAATCCCTCTG+TGG 0.672717 3_1:-85723017 None:intergenic
GCAACTACCAGGGTCTACAC+CGG 0.673262 3_1:+85723534 Msa0382940:five_prime_UTR
ATTTACAGTTGAAACCGCCA+AGG 0.674075 3_1:-85728589 None:intergenic
AAGGACCAATGAGAAGCACT+CGG 0.676097 3_1:+85722236 Msa0382940:five_prime_UTR
ACGGATCCTAGAGATCCTGT+TGG 0.677640 3_1:+85725818 Msa0382940:CDS
TTTGAGGAATCTTACCAACA+GGG 0.679460 3_1:-85722025 None:intergenic
GATTTCAACCTCGTCTAGGG+AGG 0.679700 3_1:+85727955 Msa0382940:CDS
CTTTGCTTACATCCATACAA+CGG 0.680525 3_1:-85725841 None:intergenic
GGATGGCCTTTCAAACCCTG+GGG 0.681233 3_1:+85724211 Msa0382940:five_prime_UTR
ATCCAAAGAATCCCTCTGTG+GGG 0.683864 3_1:-85723015 None:intergenic
CTCGTAGTCAGCAACTACCA+GGG 0.685612 3_1:+85723524 Msa0382940:five_prime_UTR
CGTTGTATGGATGTAAGCAA+AGG 0.710350 3_1:+85725842 Msa0382940:CDS
CGGTATTGGAGCATAAACAA+CGG 0.729220 3_1:+85727744 Msa0382940:CDS
GACCAATGAGAAGCACTCGG+AGG 0.730786 3_1:+85722239 Msa0382940:five_prime_UTR
TCAACAAGAAAATAAAGACG+TGG 0.731582 3_1:-85728408 None:intergenic
GTTGGATCACCTCTTCATGG+CGG 0.742763 3_1:+85724251 Msa0382940:five_prime_UTR
GATGGCCTTTCAAACCCTGG+GGG 0.747909 3_1:+85724212 Msa0382940:five_prime_UTR
AGCATATCTGTATCTCCACG+GGG 0.764619 3_1:-85724286 None:intergenic
AAAGTGCGAAGAGAATACCC+AGG 0.782358 3_1:-85727633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATAAAATAAAGATAAAA+AGG - chr3_1:85724344-85724363 None:intergenic 10.0%
!!! AAAAGATTTTATTTCTTATT+TGG + chr3_1:85725225-85725244 Msa0382940:intron 10.0%
!!! TTATTATCGCTTTTAATTTA+TGG + chr3_1:85722646-85722665 Msa0382940:intron 15.0%
!!! TATTTTTCCATAAAGATTTT+TGG + chr3_1:85723716-85723735 Msa0382940:intron 15.0%
!!! ATTTTTCCATAAAGATTTTT+GGG + chr3_1:85723717-85723736 Msa0382940:intron 15.0%
!!! AGTTAAACAATTTTATCTAT+AGG + chr3_1:85724374-85724393 Msa0382940:intron 15.0%
!!! ATCTATTTACTTGTTTTTTA+AGG + chr3_1:85724959-85724978 Msa0382940:intron 15.0%
!!! ATTTTATGATCAATATAAAG+TGG - chr3_1:85725879-85725898 None:intergenic 15.0%
!!! GTTTTCAAATTAAATATTTG+AGG - chr3_1:85726289-85726308 None:intergenic 15.0%
!!! ATTATTTCTATATTTTCCAA+AGG + chr3_1:85726962-85726981 Msa0382940:intron 15.0%
!!! TTATTTCTATATTTTCCAAA+GGG + chr3_1:85726963-85726982 Msa0382940:intron 15.0%
!!! ATATAAGATCATCTTTATTT+GGG - chr3_1:85727698-85727717 None:intergenic 15.0%
!!! CTTTATCTTCTATTTTTTAA+GGG + chr3_1:85727862-85727881 Msa0382940:intron 15.0%
!! TGAAGAAATAAACAAAGTAA+AGG - chr3_1:85721639-85721658 None:intergenic 20.0%
!!! TATTTCTTCATTTTGCTTAA+TGG + chr3_1:85721711-85721730 Msa0382940:intron 20.0%
!!! ATTTCTTCATTTTGCTTAAT+GGG + chr3_1:85721712-85721731 Msa0382940:intron 20.0%
!! AAGCAACTAAATCAATAAAA+TGG - chr3_1:85722110-85722129 None:intergenic 20.0%
!!! TTCTTTATATCTTAGTCTTT+TGG + chr3_1:85723310-85723329 Msa0382940:intron 20.0%
!! TATGAAAGAGATTTACTTTA+TGG + chr3_1:85725050-85725069 Msa0382940:intron 20.0%
!!! TTGTTGGTTATGTAATTAAA+AGG + chr3_1:85726334-85726353 Msa0382940:intron 20.0%
!! CAAAATTCATTTCTTTATTC+TGG + chr3_1:85726685-85726704 Msa0382940:intron 20.0%
!! TTACTAATATAATACCACTT+TGG + chr3_1:85726935-85726954 Msa0382940:intron 20.0%
!! TACTAATATAATACCACTTT+GGG + chr3_1:85726936-85726955 Msa0382940:intron 20.0%
!! CTTAAAAAATATGAGGATTA+CGG - chr3_1:85727380-85727399 None:intergenic 20.0%
!! ACATGATCTTAAAAAATATG+AGG - chr3_1:85727387-85727406 None:intergenic 20.0%
!! TTAGATTAATGTTTACTACA+TGG + chr3_1:85727432-85727451 Msa0382940:intron 20.0%
!! CATATAAGATCATCTTTATT+TGG - chr3_1:85727699-85727718 None:intergenic 20.0%
!! CCTTAAAAAATAGAAGATAA+AGG - chr3_1:85727864-85727883 None:intergenic 20.0%
!!! CCTTTATCTTCTATTTTTTA+AGG + chr3_1:85727861-85727880 Msa0382940:intron 20.0%
!!! GTTTTACCTTTAATGAATAT+CGG - chr3_1:85728040-85728059 None:intergenic 20.0%
!! GAACTTAAAATATTAACCAA+TGG + chr3_1:85728156-85728175 Msa0382940:intron 20.0%
!! TTAAAAAATCCAAAAAAGAG+AGG - chr3_1:85728755-85728774 None:intergenic 20.0%
! AAAGGAAAAACTGGATTTAA+AGG + chr3_1:85722062-85722081 Msa0382940:intron 25.0%
! TAGTTGAAAGAAAACTTTCA+TGG + chr3_1:85722284-85722303 Msa0382940:intron 25.0%
!! TGTTTTTCACATGTTTGTAA+AGG + chr3_1:85722398-85722417 Msa0382940:intron 25.0%
!!! TTGATTGTTTTAATGAACTG+CGG + chr3_1:85722465-85722484 Msa0382940:intron 25.0%
! TAGTACCATCAATTTAACAA+CGG - chr3_1:85722584-85722603 None:intergenic 25.0%
! AACAATGTTCATCTTATAGT+AGG - chr3_1:85723077-85723096 None:intergenic 25.0%
!!! CATATGTTCATTGCTTTTTT+TGG + chr3_1:85723106-85723125 Msa0382940:intron 25.0%
!!! TTATATCTTAGTCTTTTGGA+CGG + chr3_1:85723314-85723333 Msa0382940:intron 25.0%
!!! ATCATTAATTTTTCGAAAGC+AGG - chr3_1:85723346-85723365 None:intergenic 25.0%
! ATGAAACCCAAAAATCTTTA+TGG - chr3_1:85723726-85723745 None:intergenic 25.0%
! TTTCATTGTAACATTAGTTG+TGG + chr3_1:85723740-85723759 Msa0382940:intron 25.0%
! TACACTGTTTACTACAATTA+CGG - chr3_1:85723787-85723806 None:intergenic 25.0%
!! AACAACAATTTGACTTTGAA+AGG + chr3_1:85723842-85723861 Msa0382940:five_prime_UTR 25.0%
!! ACAACAATTTGACTTTGAAA+GGG + chr3_1:85723843-85723862 Msa0382940:five_prime_UTR 25.0%
!! AGTAATGAAAGTTTGTTTGA+AGG - chr3_1:85723961-85723980 None:intergenic 25.0%
!! CCTTTCTTATCCTTTTATTA+GGG + chr3_1:85723984-85724003 Msa0382940:intron 25.0%
!!! AACATTTGTAGTTGATGAAA+CGG - chr3_1:85724071-85724090 None:intergenic 25.0%
! CTTCTGAATAATAGGAATAT+TGG + chr3_1:85724179-85724198 Msa0382940:five_prime_UTR 25.0%
!! TATGCAAATCATGAATCTTT+TGG - chr3_1:85724413-85724432 None:intergenic 25.0%
! TACATTTCTACAGCTATAAA+AGG - chr3_1:85724691-85724710 None:intergenic 25.0%
!! ATTATGCATGTATTCTTTTG+TGG + chr3_1:85725004-85725023 Msa0382940:intron 25.0%
!! TTTGTGGTTAGTGTATTTTA+TGG + chr3_1:85725020-85725039 Msa0382940:intron 25.0%
!!! TGTGACTTTGAGAATTTTAA+TGG + chr3_1:85725080-85725099 Msa0382940:intron 25.0%
!!! ACTTTGAGAATTTTAATGGT+GGG + chr3_1:85725084-85725103 Msa0382940:intron 25.0%
! TTATAATAATGTCACCAAGT+TGG - chr3_1:85725300-85725319 None:intergenic 25.0%
! ACTTATGTAGAGTATGAAAT+TGG + chr3_1:85725332-85725351 Msa0382940:intron 25.0%
! TTTGAAGAACTACTATTATG+AGG - chr3_1:85725552-85725571 None:intergenic 25.0%
!! TACTCATTGCAATTTCATTT+TGG + chr3_1:85725693-85725712 Msa0382940:intron 25.0%
!!! TTTTTTATCGCAAGATGATA+CGG + chr3_1:85725799-85725818 Msa0382940:CDS 25.0%
! TCTTATCTTTCAGAATTTGA+AGG + chr3_1:85725975-85725994 Msa0382940:intron 25.0%
!! TTCTTTATTCTGGTTAGATA+TGG + chr3_1:85726695-85726714 Msa0382940:intron 25.0%
! ACTAATATAATACCACTTTG+GGG + chr3_1:85726937-85726956 Msa0382940:intron 25.0%
!! ATCTTTATAACTTTTCAGAG+TGG - chr3_1:85727046-85727065 None:intergenic 25.0%
! AAAATACTTTCAGTGAAAGA+TGG - chr3_1:85727079-85727098 None:intergenic 25.0%
!! TTTGAGATTGTTCAAGTTAT+AGG + chr3_1:85727181-85727200 Msa0382940:intron 25.0%
!!! TAAACACCAACACTTATTTT+GGG + chr3_1:85727284-85727303 Msa0382940:intron 25.0%
!!! ACATAGATGCTATTTTATCA+TGG + chr3_1:85727348-85727367 Msa0382940:intron 25.0%
! TCGAATCTAAATACAATAAC+AGG - chr3_1:85727482-85727501 None:intergenic 25.0%
! GTTAGATCTATATCTTTACT+GGG + chr3_1:85727504-85727523 Msa0382940:intron 25.0%
! ACAATTCATCTTCTATATAG+AGG - chr3_1:85727563-85727582 None:intergenic 25.0%
! ATGAATTGTGTTTCTCTAAT+GGG + chr3_1:85727574-85727593 Msa0382940:intron 25.0%
!! TAAAGTGACAATTTTCTTGT+TGG + chr3_1:85727909-85727928 Msa0382940:intron 25.0%
!! TCTAAAACTATGATGATAAC+CGG - chr3_1:85728133-85728152 None:intergenic 25.0%
! TACAACATTAAAACAACCAT+TGG - chr3_1:85728175-85728194 None:intergenic 25.0%
! TAATGTTGTACAATGATTGT+AGG + chr3_1:85728185-85728204 Msa0382940:intron 25.0%
! AATGTTGTACAATGATTGTA+GGG + chr3_1:85728186-85728205 Msa0382940:intron 25.0%
! CTTAATTGCATATTAGAGTA+GGG - chr3_1:85728465-85728484 None:intergenic 25.0%
! TCTTAATTGCATATTAGAGT+AGG - chr3_1:85728466-85728485 None:intergenic 25.0%
! AAGAAATTCATGCTTGATAT+TGG + chr3_1:85728482-85728501 Msa0382940:intron 25.0%
!!! GTAATTATTCCTCTCTTTTT+TGG + chr3_1:85728743-85728762 Msa0382940:three_prime_UTR 25.0%
! CAAAGTTCGAATATTGTAAA+TGG - chr3_1:85728922-85728941 None:intergenic 25.0%
AGAGAGTAAAAGAGAAATGA+AGG - chr3_1:85721447-85721466 None:intergenic 30.0%
!! ATTTCTTCATTTTTCCCACA+TGG + chr3_1:85721650-85721669 Msa0382940:intron 30.0%
ATGAAAAAGAAAAGCCATGT+GGG - chr3_1:85721678-85721697 None:intergenic 30.0%
! TTTTCTTTGTTGGGTTTCTT+AGG + chr3_1:85721802-85721821 Msa0382940:intron 30.0%
!! TTCATAAAAGCACAGTTTTG+AGG - chr3_1:85722044-85722063 None:intergenic 30.0%
! CAAAACTGTGCTTTTATGAA+AGG + chr3_1:85722044-85722063 Msa0382940:intron 30.0%
! GCTTTTATGAAAGGAAAAAC+TGG + chr3_1:85722053-85722072 Msa0382940:intron 30.0%
ATGCTATGCTAGTTAAAAGA+AGG + chr3_1:85722317-85722336 Msa0382940:intron 30.0%
!!! TGATTGTTTTAATGAACTGC+GGG + chr3_1:85722466-85722485 Msa0382940:intron 30.0%
AACAACGGTAACAAAGATAA+TGG - chr3_1:85722569-85722588 None:intergenic 30.0%
TGTTACCGTTGTTAAATTGA+TGG + chr3_1:85722576-85722595 Msa0382940:intron 30.0%
! GTTGTTAAATTGATGGTACT+AGG + chr3_1:85722583-85722602 Msa0382940:intron 30.0%
TGATTAATTGAGTCTGCATA+CGG - chr3_1:85722683-85722702 None:intergenic 30.0%
TATGCAGACTCAATTAATCA+AGG + chr3_1:85722683-85722702 Msa0382940:intron 30.0%
AACAACAGCAAAATAGAGAT+AGG + chr3_1:85722895-85722914 Msa0382940:five_prime_UTR 30.0%
ACAACAGCAAAATAGAGATA+GGG + chr3_1:85722896-85722915 Msa0382940:five_prime_UTR 30.0%
AATAGCAACAAAGATGTATG+AGG + chr3_1:85722977-85722996 Msa0382940:five_prime_UTR 30.0%
ATGTATGAGGAAAGGTTAAA+AGG + chr3_1:85722990-85723009 Msa0382940:five_prime_UTR 30.0%
TCAATATTGAGGCATGATTT+GGG - chr3_1:85723179-85723198 None:intergenic 30.0%
TTCAATATTGAGGCATGATT+TGG - chr3_1:85723180-85723199 None:intergenic 30.0%
TTGCCTGAAATCAAGAAATT+TGG - chr3_1:85723461-85723480 None:intergenic 30.0%
GAAGTAACAAGATAACTATG+GGG - chr3_1:85723571-85723590 None:intergenic 30.0%
GGAAGTAACAAGATAACTAT+GGG - chr3_1:85723572-85723591 None:intergenic 30.0%
AGGAAGTAACAAGATAACTA+TGG - chr3_1:85723573-85723592 None:intergenic 30.0%
AAGCAGCTAATATGGAATAT+AGG - chr3_1:85723593-85723612 None:intergenic 30.0%
CATAAAGAGTGAGATAAATC+CGG + chr3_1:85723641-85723660 Msa0382940:five_prime_UTR 30.0%
ACACTGTTTACTACAATTAC+GGG - chr3_1:85723786-85723805 None:intergenic 30.0%
!!! ATTTTCACTTTTTTTGTGCC+AGG + chr3_1:85723806-85723825 Msa0382940:intron 30.0%
GAAAGTAGAATATATCTGCA+GGG - chr3_1:85723914-85723933 None:intergenic 30.0%
TGAAAGTAGAATATATCTGC+AGG - chr3_1:85723915-85723934 None:intergenic 30.0%
! GCCTTTCTTATCCTTTTATT+AGG + chr3_1:85723983-85724002 Msa0382940:intron 30.0%
CCCTAATAAAAGGATAAGAA+AGG - chr3_1:85723987-85724006 None:intergenic 30.0%
! CTTATCCTTTTATTAGGGTT+TGG + chr3_1:85723989-85724008 Msa0382940:intron 30.0%
TGAGAATGCTTCTGAATAAT+AGG + chr3_1:85724171-85724190 Msa0382940:five_prime_UTR 30.0%
! TAGGAATATTGGCCTAAATA+AGG + chr3_1:85724190-85724209 Msa0382940:five_prime_UTR 30.0%
! AATATTGGCCTAAATAAGGA+TGG + chr3_1:85724194-85724213 Msa0382940:five_prime_UTR 30.0%
AGATACAGATATGCTAATGA+AGG + chr3_1:85724294-85724313 Msa0382940:exon 30.0%
TTTGTATGTGTAGTTGAAAC+TGG + chr3_1:85724450-85724469 Msa0382940:intron 30.0%
! TTTTTCTGATATGCTCAATC+AGG + chr3_1:85724738-85724757 Msa0382940:intron 30.0%
ATCATTAAGAATCTCATCCT+TGG - chr3_1:85724864-85724883 None:intergenic 30.0%
AAGGATGAGATTCTTAATGA+TGG + chr3_1:85724863-85724882 Msa0382940:intron 30.0%
ATGAGATTCTTAATGATGGT+TGG + chr3_1:85724867-85724886 Msa0382940:intron 30.0%
! TTCACCAATTTTTGCAATAG+TGG + chr3_1:85724895-85724914 Msa0382940:intron 30.0%
!! GACTTTGAGAATTTTAATGG+TGG + chr3_1:85725083-85725102 Msa0382940:intron 30.0%
!!! AGCATTTTGGAATACAGAAT+AGG + chr3_1:85725108-85725127 Msa0382940:intron 30.0%
!!! GCATTTTGGAATACAGAATA+GGG + chr3_1:85725109-85725128 Msa0382940:intron 30.0%
GAATAGGGAATTTGAATCTT+TGG + chr3_1:85725124-85725143 Msa0382940:intron 30.0%
!! ATCTTTGGTTGTTTCTTCAA+TGG + chr3_1:85725139-85725158 Msa0382940:intron 30.0%
AACTACTTATATGTCCAACT+TGG + chr3_1:85725283-85725302 Msa0382940:intron 30.0%
! TATGAAATTGGTTCCTAACA+TGG + chr3_1:85725344-85725363 Msa0382940:intron 30.0%
TACATTAAGAGAACCATGTT+AGG - chr3_1:85725360-85725379 None:intergenic 30.0%
AAGGTTTCAAAAAACCAGAT+GGG + chr3_1:85725384-85725403 Msa0382940:intron 30.0%
TTTATACGCGGTTTAATTGA+TGG + chr3_1:85725643-85725662 Msa0382940:intron 30.0%
TGATAAGGATCTTGAATTGA+AGG + chr3_1:85725724-85725743 Msa0382940:CDS 30.0%
AGTGTAAAACGAATTTACAC+TGG + chr3_1:85726136-85726155 Msa0382940:intron 30.0%
TAAAGAGTAACTATGTACAG+TGG - chr3_1:85726392-85726411 None:intergenic 30.0%
! ATTTTCCATCAGATGAGAAA+TGG - chr3_1:85726536-85726555 None:intergenic 30.0%
!! TTTTTCAATTTCCTTCAAGC+AGG - chr3_1:85726665-85726684 None:intergenic 30.0%
TAGAAATAATTTCCCCAAAG+TGG - chr3_1:85726952-85726971 None:intergenic 30.0%
! GTAAACACCAACACTTATTT+TGG + chr3_1:85727283-85727302 Msa0382940:intron 30.0%
TTCAATAAACTTCCAATTGC+TGG - chr3_1:85727313-85727332 None:intergenic 30.0%
TTACTACATGGAGTTGTAAA+AGG + chr3_1:85727444-85727463 Msa0382940:intron 30.0%
CGTTAGATCTATATCTTTAC+TGG + chr3_1:85727503-85727522 Msa0382940:intron 30.0%
GATGTTAATGATTGCATTCT+TGG + chr3_1:85727526-85727545 Msa0382940:intron 30.0%
GATGAATTGTGTTTCTCTAA+TGG + chr3_1:85727573-85727592 Msa0382940:intron 30.0%
!! TGACAATTTTCTTGTTGGTT+AGG + chr3_1:85727914-85727933 Msa0382940:intron 30.0%
!! GACAATTTTCTTGTTGGTTA+GGG + chr3_1:85727915-85727934 Msa0382940:intron 30.0%
TTAGAAGTTCTACTTGAGTT+AGG + chr3_1:85728078-85728097 Msa0382940:intron 30.0%
TAGAAGTTCTACTTGAGTTA+GGG + chr3_1:85728079-85728098 Msa0382940:intron 30.0%
! AAGATAAAAAGTGCACAACT+CGG - chr3_1:85728108-85728127 None:intergenic 30.0%
!! TGTGCACTTTTTATCTTATC+CGG + chr3_1:85728111-85728130 Msa0382940:intron 30.0%
AGACAATAGATTCTGTATGT+TGG + chr3_1:85728217-85728236 Msa0382940:CDS 30.0%
GACAATAGATTCTGTATGTT+GGG + chr3_1:85728218-85728237 Msa0382940:CDS 30.0%
TCAACAAGAAAATAAAGACG+TGG - chr3_1:85728411-85728430 None:intergenic 30.0%
CTTGTTGATATTTGCGAATT+TGG + chr3_1:85728423-85728442 Msa0382940:intron 30.0%
! CTTTGGAAGTAACTAACATA+AGG + chr3_1:85728651-85728670 Msa0382940:exon 30.0%
AACGTTGCATTACATTACAT+AGG - chr3_1:85728809-85728828 None:intergenic 30.0%
!!! AGAGTTTGGTTTTCTTGCTA+TGG - chr3_1:85721501-85721520 None:intergenic 35.0%
! GTTTGAGACATGGTTGAAAA+AGG - chr3_1:85721584-85721603 None:intergenic 35.0%
AACCATGTCTCAAACTAACT+GGG + chr3_1:85721589-85721608 Msa0382940:five_prime_UTR 35.0%
CATGAAAAAGAAAAGCCATG+TGG - chr3_1:85721679-85721698 None:intergenic 35.0%
!!! TGCACACACTTTTTCTTTGT+TGG + chr3_1:85721792-85721811 Msa0382940:intron 35.0%
!!! GCACACACTTTTTCTTTGTT+GGG + chr3_1:85721793-85721812 Msa0382940:intron 35.0%
GTTGCATTGTGAGAAATTTC+AGG + chr3_1:85721913-85721932 Msa0382940:intron 35.0%
TCCATGATTACCTTGTTAAG+AGG + chr3_1:85721949-85721968 Msa0382940:five_prime_UTR 35.0%
CCATGATTACCTTGTTAAGA+GGG + chr3_1:85721950-85721969 Msa0382940:five_prime_UTR 35.0%
CTTTCAAATCCCTCTTAACA+AGG - chr3_1:85721962-85721981 None:intergenic 35.0%
TTTGAGGAATCTTACCAACA+GGG - chr3_1:85722028-85722047 None:intergenic 35.0%
!! TTTTGAGGAATCTTACCAAC+AGG - chr3_1:85722029-85722048 None:intergenic 35.0%
!! TCTGGGATATTTTCATTGCA+AGG + chr3_1:85722217-85722236 Msa0382940:five_prime_UTR 35.0%
!! GTTTGCTATCACAGAATAGT+TGG + chr3_1:85722435-85722454 Msa0382940:intron 35.0%
AGACTCAATTAATCAAGGCA+AGG + chr3_1:85722688-85722707 Msa0382940:intron 35.0%
GACTCAATTAATCAAGGCAA+GGG + chr3_1:85722689-85722708 Msa0382940:intron 35.0%
!!! TCTCTATTTTGCTGTTGTTG+TGG - chr3_1:85722894-85722913 None:intergenic 35.0%
! TCTTAAATGGTAGCGCAAAT+GGG + chr3_1:85722925-85722944 Msa0382940:five_prime_UTR 35.0%
CAACAAAGATGTATGAGGAA+AGG + chr3_1:85722982-85723001 Msa0382940:five_prime_UTR 35.0%
TATGCTGTACAGCAAAGATT+TGG + chr3_1:85723129-85723148 Msa0382940:intron 35.0%
!! CAAAGATTTGGTGAGAACAT+GGG + chr3_1:85723141-85723160 Msa0382940:five_prime_UTR 35.0%
ACAAAAAAAACTCACCCTGA+AGG - chr3_1:85723225-85723244 None:intergenic 35.0%
TTCTGCATTCTCTATATCTG+TGG + chr3_1:85723417-85723436 Msa0382940:intron 35.0%
TCTGCATTCTCTATATCTGT+GGG + chr3_1:85723418-85723437 Msa0382940:intron 35.0%
GCACCAAATTTCTTGATTTC+AGG + chr3_1:85723455-85723474 Msa0382940:intron 35.0%
CTTTATGTCCTGATTCCAAA+TGG - chr3_1:85723628-85723647 None:intergenic 35.0%
ATTCCTAACAATGATCCTTC+AGG - chr3_1:85723690-85723709 None:intergenic 35.0%
GGATCATTGTTAGGAATTTC+TGG + chr3_1:85723693-85723712 Msa0382940:five_prime_UTR 35.0%
! ACAATTTGACTTTGAAAGGG+TGG + chr3_1:85723846-85723865 Msa0382940:five_prime_UTR 35.0%
TTGCTCCAAACCCTAATAAA+AGG - chr3_1:85723997-85724016 None:intergenic 35.0%
! TTGAAAGGCCATCCTTATTT+AGG - chr3_1:85724205-85724224 None:intergenic 35.0%
TTAGCATATCTGTATCTCCA+CGG - chr3_1:85724291-85724310 None:intergenic 35.0%
!! TTCCACCTTTTGCTTGTTTT+TGG + chr3_1:85724837-85724856 Msa0382940:intron 35.0%
TTGGACCAAAAACAAGCAAA+AGG - chr3_1:85724845-85724864 None:intergenic 35.0%
!!! TTTTGCTTGTTTTTGGTCCA+AGG + chr3_1:85724844-85724863 Msa0382940:intron 35.0%
CAAGCCACTATTGCAAAAAT+TGG - chr3_1:85724902-85724921 None:intergenic 35.0%
!!! TTTAATGGTGGGAAGCATTT+TGG + chr3_1:85725095-85725114 Msa0382940:intron 35.0%
! CTCTTTAACTTCAAGATTCG+AGG + chr3_1:85725189-85725208 Msa0382940:intron 35.0%
AGATTCGAGGATTGAATAGT+TGG + chr3_1:85725202-85725221 Msa0382940:intron 35.0%
GGTTCTCTTAATGTACTTGA+AGG + chr3_1:85725365-85725384 Msa0382940:intron 35.0%
GAAGGTTTCAAAAAACCAGA+TGG + chr3_1:85725383-85725402 Msa0382940:intron 35.0%
TCAGTGCTAAACATCATTAG+AGG - chr3_1:85725576-85725595 None:intergenic 35.0%
! CTAATGATGTTTAGCACTGA+TGG + chr3_1:85725576-85725595 Msa0382940:CDS 35.0%
TATAAAAGCAACTCACCAAC+TGG - chr3_1:85725629-85725648 None:intergenic 35.0%
TTGCAATGAGTATACATGCA+AGG - chr3_1:85725685-85725704 None:intergenic 35.0%
!! TTGCAATTTCATTTTGGCAG+TGG + chr3_1:85725699-85725718 Msa0382940:intron 35.0%
!! TGCAATTTCATTTTGGCAGT+GGG + chr3_1:85725700-85725719 Msa0382940:intron 35.0%
CTTTGCTTACATCCATACAA+CGG - chr3_1:85725844-85725863 None:intergenic 35.0%
CACATAAGAAACTCTTTGCA+AGG - chr3_1:85725915-85725934 None:intergenic 35.0%
! TGATGATGTAGTTAGAGGAA+TGG - chr3_1:85726070-85726089 None:intergenic 35.0%
!! CACTTTGATGATGTAGTTAG+AGG - chr3_1:85726075-85726094 None:intergenic 35.0%
CTCTAACTACATCATCAAAG+TGG + chr3_1:85726073-85726092 Msa0382940:intron 35.0%
!!! GGGCTGATTTTTTTTCTTTC+AGG + chr3_1:85726453-85726472 Msa0382940:intron 35.0%
GATGGAAAATTACTTGCAAG+TGG + chr3_1:85726546-85726565 Msa0382940:CDS 35.0%
TGCATTACATGAAAATCAGG+AGG - chr3_1:85726737-85726756 None:intergenic 35.0%
! TCCTGATTTTCATGTAATGC+AGG + chr3_1:85726736-85726755 Msa0382940:intron 35.0%
ATGTAATGCAGGCTGTTATA+TGG + chr3_1:85726747-85726766 Msa0382940:intron 35.0%
TTCATTCGACAAAACTGTCA+GGG + chr3_1:85726868-85726887 Msa0382940:CDS 35.0%
GTATGTTACTCAAAACCCTT+TGG - chr3_1:85726981-85727000 None:intergenic 35.0%
ACATACTATGCACATCACAA+TGG + chr3_1:85726995-85727014 Msa0382940:intron 35.0%
TGGTATCCCAAAATAAGTGT+TGG - chr3_1:85727293-85727312 None:intergenic 35.0%
!!! TATTTTGGGATACCAGCAAT+TGG + chr3_1:85727298-85727317 Msa0382940:intron 35.0%
GTAGTCTATGCATAAGTTTG+TGG + chr3_1:85727405-85727424 Msa0382940:intron 35.0%
! GTATTCTCTTCGCACTTTTA+CGG + chr3_1:85727638-85727657 Msa0382940:CDS 35.0%
! TATTCTCTTCGCACTTTTAC+GGG + chr3_1:85727639-85727658 Msa0382940:CDS 35.0%
GATCTTATATGTTCGTGTGA+TGG + chr3_1:85727708-85727727 Msa0382940:CDS 35.0%
! TGCAAAGCATCTTGTACAAA+GGG - chr3_1:85727830-85727849 None:intergenic 35.0%
TAGAAGATAAAGGCCATCTA+GGG - chr3_1:85727854-85727873 None:intergenic 35.0%
ATAGAAGATAAAGGCCATCT+AGG - chr3_1:85727855-85727874 None:intergenic 35.0%
TAATACGCAAGCTACAAAAC+AGG - chr3_1:85727891-85727910 None:intergenic 35.0%
!! AATTTTCTTGTTGGTTAGGG+TGG + chr3_1:85727918-85727937 Msa0382940:intron 35.0%
TATACTTGATGTGGAAACAC+AGG + chr3_1:85728010-85728029 Msa0382940:CDS 35.0%
TGATGGTTTAATTACTGCCT+TGG + chr3_1:85728572-85728591 Msa0382940:CDS 35.0%
AATTAATCCAAGCTGAGTTC+AGG + chr3_1:85728851-85728870 Msa0382940:three_prime_UTR 35.0%
GCAGAAGTAGATGAAGAGTT+TGG - chr3_1:85721515-85721534 None:intergenic 40.0%
ATCATCCAACACCTTCTACA+CGG + chr3_1:85721555-85721574 Msa0382940:five_prime_UTR 40.0%
CAACCATGTCTCAAACTAAC+TGG + chr3_1:85721588-85721607 Msa0382940:five_prime_UTR 40.0%
! TTCCCAGTTAGTTTGAGACA+TGG - chr3_1:85721594-85721613 None:intergenic 40.0%
CCCTCTTAACAAGGTAATCA+TGG - chr3_1:85721953-85721972 None:intergenic 40.0%
! AAAGTATCATCTGACCCTGT+TGG + chr3_1:85722011-85722030 Msa0382940:five_prime_UTR 40.0%
! TTTTCTGTTTGAGTGGTGGT+CGG + chr3_1:85722191-85722210 Msa0382940:five_prime_UTR 40.0%
ATGTTTGTAAAGGACCTTCG+TGG + chr3_1:85722408-85722427 Msa0382940:intron 40.0%
TGTTTGTAAAGGACCTTCGT+GGG + chr3_1:85722409-85722428 Msa0382940:intron 40.0%
!!! TTTTGCTGTTGTTGTGGTTG+TGG - chr3_1:85722888-85722907 None:intergenic 40.0%
GATAGGGCTCATCTCTTAAA+TGG + chr3_1:85722912-85722931 Msa0382940:five_prime_UTR 40.0%
! CTCTTAAATGGTAGCGCAAA+TGG + chr3_1:85722924-85722943 Msa0382940:five_prime_UTR 40.0%
ATGAAGGTAGAAGGATGTTC+TGG + chr3_1:85723047-85723066 Msa0382940:intron 40.0%
!! GCAAAGATTTGGTGAGAACA+TGG + chr3_1:85723140-85723159 Msa0382940:intron 40.0%
! TGCAGCTGACTTCAATATTG+AGG - chr3_1:85723190-85723209 None:intergenic 40.0%
! GATTTCAGGCAAGTTTTGCA+TGG + chr3_1:85723469-85723488 Msa0382940:intron 40.0%
TCAGGGAAAAGCAGCTAATA+TGG - chr3_1:85723601-85723620 None:intergenic 40.0%
TGATTCCAAATGGCAAGTCA+GGG - chr3_1:85723618-85723637 None:intergenic 40.0%
TTTGTGCCAGGATCAAATCA+AGG + chr3_1:85723818-85723837 Msa0382940:intron 40.0%
TTGTGCCAGGATCAAATCAA+GGG + chr3_1:85723819-85723838 Msa0382940:intron 40.0%
! TTGTTCCCTTGATTTGATCC+TGG - chr3_1:85723827-85723846 None:intergenic 40.0%
AAATGATCACGTACTGTGAG+TGG - chr3_1:85723872-85723891 None:intergenic 40.0%
GGTGACATGTTATCGAATGT+TGG + chr3_1:85724233-85724252 Msa0382940:five_prime_UTR 40.0%
AATGTTGGATCACCTCTTCA+TGG + chr3_1:85724248-85724267 Msa0382940:five_prime_UTR 40.0%
TAGCATATCTGTATCTCCAC+GGG - chr3_1:85724290-85724309 None:intergenic 40.0%
AGCATGTCAAACTCATATCG+AGG + chr3_1:85724649-85724668 Msa0382940:CDS 40.0%
CTCATATCGAGGAAATGATC+AGG + chr3_1:85724660-85724679 Msa0382940:CDS 40.0%
GTATAATGCTTGACGCATGA+CGG + chr3_1:85724708-85724727 Msa0382940:intron 40.0%
GTGTGAGTTCTTATGCTTTG+TGG + chr3_1:85724812-85724831 Msa0382940:intron 40.0%
GACCAAAAACAAGCAAAAGG+TGG - chr3_1:85724842-85724861 None:intergenic 40.0%
AAAGCAACCGGTATCTTCTT+CGG + chr3_1:85725416-85725435 Msa0382940:CDS 40.0%
TCCTGCAAATAGTTCAGGAA+CGG + chr3_1:85725440-85725459 Msa0382940:CDS 40.0%
TAGTTCAGGAACGGCAAATA+CGG + chr3_1:85725449-85725468 Msa0382940:CDS 40.0%
CTACTATTATGAGGCAAAGC+AGG - chr3_1:85725543-85725562 None:intergenic 40.0%
!! ATGTTTAGCACTGATGGTAC+TGG + chr3_1:85725582-85725601 Msa0382940:CDS 40.0%
TACATCACCTTCAAACCAGT+TGG + chr3_1:85725611-85725630 Msa0382940:CDS 40.0%
!!! TGGTGAGTTGCTTTTATACG+CGG + chr3_1:85725631-85725650 Msa0382940:intron 40.0%
TACGCGGTTTAATTGATGGA+AGG + chr3_1:85725647-85725666 Msa0382940:intron 40.0%
!! ATTTTGGCAGTGGGATGATA+AGG + chr3_1:85725709-85725728 Msa0382940:intron 40.0%
TCTTGAATTGAAGGCTGATG+TGG + chr3_1:85725733-85725752 Msa0382940:CDS 40.0%
CGTTGTATGGATGTAAGCAA+AGG + chr3_1:85725842-85725861 Msa0382940:CDS 40.0%
TCTTTATGCGTGTGTGTTGT+TGG + chr3_1:85726318-85726337 Msa0382940:intron 40.0%
CTCTTTAATTCCTTGACGTG+AGG + chr3_1:85726405-85726424 Msa0382940:intron 40.0%
ATCAGATGAGAAATGGCAAC+AGG - chr3_1:85726529-85726548 None:intergenic 40.0%
! TGTTGCCATTTCTCATCTGA+TGG + chr3_1:85726528-85726547 Msa0382940:CDS 40.0%
GGAAAATTACTTGCAAGTGG+TGG + chr3_1:85726549-85726568 Msa0382940:CDS 40.0%
TGGCCATGACAAAAAGGTTA+GGG + chr3_1:85726569-85726588 Msa0382940:intron 40.0%
! TTCCCCTAACCTTTTTGTCA+TGG - chr3_1:85726575-85726594 None:intergenic 40.0%
GCCTGCATTACATGAAAATC+AGG - chr3_1:85726740-85726759 None:intergenic 40.0%
AATGAAGATGTTGCTAGACG+TGG - chr3_1:85726854-85726873 None:intergenic 40.0%
CTTCATTCGACAAAACTGTC+AGG + chr3_1:85726867-85726886 Msa0382940:CDS 40.0%
TATATGCTTTCTATGCAGCC+TGG + chr3_1:85727615-85727634 Msa0382940:intron 40.0%
ATATGCTTTCTATGCAGCCT+GGG + chr3_1:85727616-85727635 Msa0382940:intron 40.0%
! ATATGTTCGTGTGATGGTGA+TGG + chr3_1:85727714-85727733 Msa0382940:CDS 40.0%
! CGGTATTGGAGCATAAACAA+CGG + chr3_1:85727744-85727763 Msa0382940:CDS 40.0%
CAGTTGTGTTAGAGTCTCTA+AGG + chr3_1:85727767-85727786 Msa0382940:CDS 40.0%
! GCAAAGCATCTTGTACAAAG+GGG - chr3_1:85727829-85727848 None:intergenic 40.0%
! CTGCAAAGCATCTTGTACAA+AGG - chr3_1:85727831-85727850 None:intergenic 40.0%
ACGAGGTTGAAATCTCATCT+GGG - chr3_1:85727949-85727968 None:intergenic 40.0%
ATGAGATTTCAACCTCGTCT+AGG + chr3_1:85727951-85727970 Msa0382940:CDS 40.0%
TGAGATTTCAACCTCGTCTA+GGG + chr3_1:85727952-85727971 Msa0382940:CDS 40.0%
CATCGTGTCTATACTTGATG+TGG + chr3_1:85728001-85728020 Msa0382940:CDS 40.0%
GGCATGCCGATATTCATTAA+AGG + chr3_1:85728031-85728050 Msa0382940:CDS 40.0%
TTCTGTATGTTGGGATCCAT+CGG + chr3_1:85728227-85728246 Msa0382940:CDS 40.0%
TCAGGATTTGGACTCTTGAA+GGG + chr3_1:85728283-85728302 Msa0382940:CDS 40.0%
GTTCATGAGCTTAGCTGTAA+TGG + chr3_1:85728312-85728331 Msa0382940:CDS 40.0%
GGTACATGTTGTGTAGTCAT+TGG + chr3_1:85728503-85728522 Msa0382940:intron 40.0%
ATGACTTTGTCTGCTCATGA+TGG + chr3_1:85728555-85728574 Msa0382940:CDS 40.0%
TGGTTTAATTACTGCCTTGG+CGG + chr3_1:85728575-85728594 Msa0382940:CDS 40.0%
ATTTACAGTTGAAACCGCCA+AGG - chr3_1:85728592-85728611 None:intergenic 40.0%
TTGGCGGTTTCAACTGTAAA+TGG + chr3_1:85728591-85728610 Msa0382940:CDS 40.0%
ACGACAAGTTCATCAAGCTT+TGG + chr3_1:85728634-85728653 Msa0382940:CDS 40.0%
! GTATCGCGAGTATTGTCAAT+CGG - chr3_1:85728688-85728707 None:intergenic 40.0%
! CATAGGTTAGTCCAAAAGAG+TGG - chr3_1:85728792-85728811 None:intergenic 40.0%
!! GTGTAGAAGGTGTTGGATGA+TGG - chr3_1:85721556-85721575 None:intergenic 45.0%
GAAAAAGGTGACCGTGTAGA+AGG - chr3_1:85721569-85721588 None:intergenic 45.0%
!! TGCTCAAGCTTTTCAAGCTG+AGG + chr3_1:85721986-85722005 Msa0382940:five_prime_UTR 45.0%
!! GCTCAAGCTTTTCAAGCTGA+GGG + chr3_1:85721987-85722006 Msa0382940:five_prime_UTR 45.0%
!! GCTTTATTTGCGTGTGTGTG+TGG + chr3_1:85722126-85722145 Msa0382940:intron 45.0%
!! TGTGTGGTTGATGGCAACAT+GGG + chr3_1:85722142-85722161 Msa0382940:intron 45.0%
ATTGCAGCTATTGATGCTCC+TGG + chr3_1:85722165-85722184 Msa0382940:intron 45.0%
CACTCAAACAGAAAACCTCC+AGG - chr3_1:85722186-85722205 None:intergenic 45.0%
! CTGGAGGTTTTCTGTTTGAG+TGG + chr3_1:85722184-85722203 Msa0382940:five_prime_UTR 45.0%
! GAGGTTTTCTGTTTGAGTGG+TGG + chr3_1:85722187-85722206 Msa0382940:five_prime_UTR 45.0%
!! AAGGACCAATGAGAAGCACT+CGG + chr3_1:85722236-85722255 Msa0382940:five_prime_UTR 45.0%
GGTGGCTGCATCATATATAG+AGG + chr3_1:85722260-85722279 Msa0382940:five_prime_UTR 45.0%
GATAGCAAACTAACCCACGA+AGG - chr3_1:85722425-85722444 None:intergenic 45.0%
TGTTGTTGTGGTTGTGGTTG+TGG - chr3_1:85722882-85722901 None:intergenic 45.0%
!! AAATGGGTTAGCTGGAAACC+CGG + chr3_1:85722941-85722960 Msa0382940:five_prime_UTR 45.0%
CTATTGCATTAGCAGTTGCC+GGG - chr3_1:85722962-85722981 None:intergenic 45.0%
GCTATTGCATTAGCAGTTGC+CGG - chr3_1:85722963-85722982 None:intergenic 45.0%
ATCCAAAGAATCCCTCTGTG+GGG - chr3_1:85723018-85723037 None:intergenic 45.0%
CATCCAAAGAATCCCTCTGT+GGG - chr3_1:85723019-85723038 None:intergenic 45.0%
TCATCCAAAGAATCCCTCTG+TGG - chr3_1:85723020-85723039 None:intergenic 45.0%
TTTGGATGACGCAGCAATGA+AGG + chr3_1:85723031-85723050 Msa0382940:five_prime_UTR 45.0%
ATATTGAAGTCAGCTGCAGC+TGG + chr3_1:85723192-85723211 Msa0382940:five_prime_UTR 45.0%
TGACTACGAGCTTGAACTTG+TGG - chr3_1:85723514-85723533 None:intergenic 45.0%
CAAGATAACTATGGGGACAG+AGG - chr3_1:85723564-85723583 None:intergenic 45.0%
!! CTTTTCCCTGACTTGCCATT+TGG + chr3_1:85723610-85723629 Msa0382940:intron 45.0%
CTGATTCCAAATGGCAAGTC+AGG - chr3_1:85723619-85723638 None:intergenic 45.0%
! CTGACTTGCCATTTGGAATC+AGG + chr3_1:85723617-85723636 Msa0382940:intron 45.0%
!! GCAGCTCTGGGATTTAAAAC+CGG - chr3_1:85723663-85723682 None:intergenic 45.0%
!!! GGTTTTAAATCCCAGAGCTG+CGG + chr3_1:85723662-85723681 Msa0382940:five_prime_UTR 45.0%
!! GTTTTAAATCCCAGAGCTGC+GGG + chr3_1:85723663-85723682 Msa0382940:five_prime_UTR 45.0%
GGTCCTGAAGGATCATTGTT+AGG + chr3_1:85723684-85723703 Msa0382940:five_prime_UTR 45.0%
! GCAGCAAAAGCCTTATATGC+AGG + chr3_1:85724037-85724056 Msa0382940:five_prime_UTR 45.0%
!! TGTAGTTGATGAAACGGCTG+AGG - chr3_1:85724065-85724084 None:intergenic 45.0%
ATAAGCTGTTGCTGATGCTG+TGG - chr3_1:85724098-85724117 None:intergenic 45.0%
CTACTTTCTTCACTGGCAGA+TGG - chr3_1:85724146-85724165 None:intergenic 45.0%
CTGCCAGTGAAGAAAGTAGA+AGG + chr3_1:85724147-85724166 Msa0382940:five_prime_UTR 45.0%
CAGCCTTCTACTTTCTTCAC+TGG - chr3_1:85724153-85724172 None:intergenic 45.0%
AGCATATCTGTATCTCCACG+GGG - chr3_1:85724289-85724308 None:intergenic 45.0%
TAGCATGCACCAGCAAGATA+AGG + chr3_1:85724591-85724610 Msa0382940:CDS 45.0%
ATGCACCAGCAAGATAAGGT+AGG + chr3_1:85724595-85724614 Msa0382940:CDS 45.0%
TGCACCAGCAAGATAAGGTA+GGG + chr3_1:85724596-85724615 Msa0382940:CDS 45.0%
AAATGCAGTTAACCCTGCTG+TGG - chr3_1:85724927-85724946 None:intergenic 45.0%
GCTTTCTCTTTCTTCCCATC+TGG - chr3_1:85725401-85725420 None:intergenic 45.0%
GGGAAGAAAGAGAAAGCAAC+CGG + chr3_1:85725404-85725423 Msa0382940:CDS 45.0%
AAGCAACCGGTATCTTCTTC+GGG + chr3_1:85725417-85725436 Msa0382940:CDS 45.0%
! TATGAGTTGAGGGAGTTGAG+GGG - chr3_1:85725497-85725516 None:intergenic 45.0%
! GTATGAGTTGAGGGAGTTGA+GGG - chr3_1:85725498-85725517 None:intergenic 45.0%
! AGTATGAGTTGAGGGAGTTG+AGG - chr3_1:85725499-85725518 None:intergenic 45.0%
! TCTCCAGGAGTATGAGTTGA+GGG - chr3_1:85725507-85725526 None:intergenic 45.0%
! ATCTCCAGGAGTATGAGTTG+AGG - chr3_1:85725508-85725527 None:intergenic 45.0%
!! CAACTCACCAACTGGTTTGA+AGG - chr3_1:85725621-85725640 None:intergenic 45.0%
! TTTTAGCGTGTAACTCGCTG+TGG + chr3_1:85726184-85726203 Msa0382940:intron 45.0%
TGGCACAGATTCAGAAGCTA+TGG + chr3_1:85726431-85726450 Msa0382940:intron 45.0%
GGCACAGATTCAGAAGCTAT+GGG + chr3_1:85726432-85726451 Msa0382940:intron 45.0%
GCACAGATTCAGAAGCTATG+GGG + chr3_1:85726433-85726452 Msa0382940:intron 45.0%
AAGTGGTGGCCATGACAAAA+AGG + chr3_1:85726563-85726582 Msa0382940:CDS 45.0%
GTGGCCATGACAAAAAGGTT+AGG + chr3_1:85726568-85726587 Msa0382940:intron 45.0%
GGCCATGACAAAAAGGTTAG+GGG + chr3_1:85726570-85726589 Msa0382940:intron 45.0%
TGTGCAATTGTCCTGCTTGA+AGG + chr3_1:85726651-85726670 Msa0382940:intron 45.0%
GCAGGCTGTTATATGGTATG+CGG + chr3_1:85726754-85726773 Msa0382940:intron 45.0%
TCGACAAAACTGTCAGGGTT+TGG + chr3_1:85726873-85726892 Msa0382940:CDS 45.0%
CGACAAAACTGTCAGGGTTT+GGG + chr3_1:85726874-85726893 Msa0382940:CDS 45.0%
AAAGTGCGAAGAGAATACCC+AGG - chr3_1:85727636-85727655 None:intergenic 45.0%
!! GTGATGGTGATGGTGAGATA+CGG + chr3_1:85727724-85727743 Msa0382940:CDS 45.0%
! GTGATGGTGAGATACGGTAT+TGG + chr3_1:85727730-85727749 Msa0382940:CDS 45.0%
GACGAGGTTGAAATCTCATC+TGG - chr3_1:85727950-85727969 None:intergenic 45.0%
TCTGTATGTTGGGATCCATC+GGG + chr3_1:85728228-85728247 Msa0382940:CDS 45.0%
GTCAGGATTTGGACTCTTGA+AGG + chr3_1:85728282-85728301 Msa0382940:CDS 45.0%
CAGGATTTGGACTCTTGAAG+GGG + chr3_1:85728284-85728303 Msa0382940:CDS 45.0%
AACCAATGACGAGCAGTGAA+GGG - chr3_1:85728374-85728393 None:intergenic 45.0%
AATAAAGACGTGGACTTGCC+TGG - chr3_1:85728401-85728420 None:intergenic 45.0%
TTGTGTAGTCATTGGAGCTG+TGG + chr3_1:85728511-85728530 Msa0382940:intron 45.0%
CTTGATGAACTTGTCGTGAC+TGG - chr3_1:85728631-85728650 None:intergenic 45.0%
ACAATACTCGCGATACAGTC+AGG + chr3_1:85728692-85728711 Msa0382940:three_prime_UTR 45.0%
TTAGTCCAAAAGAGTGGAGG+CGG - chr3_1:85728786-85728805 None:intergenic 45.0%
! AGGTTAGTCCAAAAGAGTGG+AGG - chr3_1:85728789-85728808 None:intergenic 45.0%
AAGTCTACCTGAACTCAGCT+TGG - chr3_1:85728861-85728880 None:intergenic 45.0%
!!! TTATTTTAAAAACATTTATT+TGG + chr3_1:85723376-85723395 Msa0382940:intron 5.0%
!!! ACAAAATAATAAAATTTTAT+TGG - chr3_1:85726038-85726057 None:intergenic 5.0%
TTTCCCACATGGTTCCCACA+TGG + chr3_1:85721661-85721680 Msa0382940:intron 50.0%
AAGCCATGTGGGAACCATGT+GGG - chr3_1:85721667-85721686 None:intergenic 50.0%
AAAGCCATGTGGGAACCATG+TGG - chr3_1:85721668-85721687 None:intergenic 50.0%
TTGCGTGTGTGTGTGGTTGA+TGG + chr3_1:85722133-85722152 Msa0382940:intron 50.0%
!! GTGTGTGGTTGATGGCAACA+TGG + chr3_1:85722141-85722160 Msa0382940:intron 50.0%
!! TTGAGTGGTGGTCGGTTTTC+TGG + chr3_1:85722199-85722218 Msa0382940:five_prime_UTR 50.0%
!! TGAGTGGTGGTCGGTTTTCT+GGG + chr3_1:85722200-85722219 Msa0382940:five_prime_UTR 50.0%
GTTAAAAGGTCCCCCACAGA+GGG + chr3_1:85723004-85723023 Msa0382940:five_prime_UTR 50.0%
TCCAAAGAATCCCTCTGTGG+GGG - chr3_1:85723017-85723036 None:intergenic 50.0%
GACGCAGCAATGAAGGTAGA+AGG + chr3_1:85723038-85723057 Msa0382940:intron 50.0%
TGAGAACATGGGTCAGCTCT+TGG + chr3_1:85723152-85723171 Msa0382940:five_prime_UTR 50.0%
! CAAGTTTTGCATGGCACTGC+TGG + chr3_1:85723478-85723497 Msa0382940:five_prime_UTR 50.0%
! TTTTGCATGGCACTGCTGGT+GGG + chr3_1:85723482-85723501 Msa0382940:five_prime_UTR 50.0%
CTCGTAGTCAGCAACTACCA+GGG + chr3_1:85723524-85723543 Msa0382940:five_prime_UTR 50.0%
AAGGATGGCCTTTCAAACCC+TGG + chr3_1:85724209-85724228 Msa0382940:five_prime_UTR 50.0%
AGGATGGCCTTTCAAACCCT+GGG + chr3_1:85724210-85724229 Msa0382940:five_prime_UTR 50.0%
TCGATAACATGTCACCCCCA+GGG - chr3_1:85724229-85724248 None:intergenic 50.0%
TTCGATAACATGTCACCCCC+AGG - chr3_1:85724230-85724249 None:intergenic 50.0%
GTTGGATCACCTCTTCATGG+CGG + chr3_1:85724251-85724270 Msa0382940:five_prime_UTR 50.0%
ATCTGTATCTCCACGGGGAA+AGG - chr3_1:85724284-85724303 None:intergenic 50.0%
GCACCAGCAAGATAAGGTAG+GGG + chr3_1:85724597-85724616 Msa0382940:CDS 50.0%
CACCAGCAAGATAAGGTAGG+GGG + chr3_1:85724598-85724617 Msa0382940:CDS 50.0%
GTTTGACATGCTGCCATCCA+TGG - chr3_1:85724641-85724660 None:intergenic 50.0%
!! ATAGTGGCTTGTTCCACAGC+AGG + chr3_1:85724911-85724930 Msa0382940:intron 50.0%
!! TAGTGGCTTGTTCCACAGCA+GGG + chr3_1:85724912-85724931 Msa0382940:intron 50.0%
TCGGGTCCTGCAAATAGTTC+AGG + chr3_1:85725435-85725454 Msa0382940:CDS 50.0%
GCCGTTCCTGAACTATTTGC+AGG - chr3_1:85725444-85725463 None:intergenic 50.0%
! ATGAGTTGAGGGAGTTGAGG+GGG - chr3_1:85725496-85725515 None:intergenic 50.0%
ACTCCCTCAACTCATACTCC+TGG + chr3_1:85725501-85725520 Msa0382940:CDS 50.0%
! GGCATTGAAACAGCATCTCC+AGG - chr3_1:85725522-85725541 None:intergenic 50.0%
TGGATCGCTTTGTGGACGAT+GGG + chr3_1:85725753-85725772 Msa0382940:CDS 50.0%
ACGGATCCTAGAGATCCTGT+TGG + chr3_1:85725818-85725837 Msa0382940:CDS 50.0%
AGATCCTGTTGGCCGTTGTA+TGG + chr3_1:85725829-85725848 Msa0382940:CDS 50.0%
ACATCCATACAACGGCCAAC+AGG - chr3_1:85725836-85725855 None:intergenic 50.0%
GACATGACGCAGCAAAGTAG+CGG + chr3_1:85726097-85726116 Msa0382940:intron 50.0%
CGTGTAACTCGCTGTGGTAA+TGG + chr3_1:85726190-85726209 Msa0382940:intron 50.0%
GTGGCATGCTTGCACTGAAA+CGG - chr3_1:85726835-85726854 None:intergenic 50.0%
AGATGCTTTGCAGCCCTAGA+TGG + chr3_1:85727838-85727857 Msa0382940:intron 50.0%
GATTTCAACCTCGTCTAGGG+AGG + chr3_1:85727955-85727974 Msa0382940:CDS 50.0%
! TGTTTTCAGCTGCTGCAGCA+AGG - chr3_1:85727983-85728002 None:intergenic 50.0%
ATTGCTGGCATCTGTGAGTG+AGG + chr3_1:85728254-85728273 Msa0382940:CDS 50.0%
GTGAGGACTCTGTCAGGATT+TGG + chr3_1:85728271-85728290 Msa0382940:CDS 50.0%
GCAGTGAAGGGAATGTTGGA+TGG - chr3_1:85728362-85728381 None:intergenic 50.0%
ACGAGCAGTGAAGGGAATGT+TGG - chr3_1:85728366-85728385 None:intergenic 50.0%
TTCCCTTCACTGCTCGTCAT+TGG + chr3_1:85728369-85728388 Msa0382940:CDS 50.0%
CAACCAATGACGAGCAGTGA+AGG - chr3_1:85728375-85728394 None:intergenic 50.0%
! GCTCGTCATTGGTTGTTACC+AGG + chr3_1:85728380-85728399 Msa0382940:CDS 50.0%
GTCATTGGAGCTGTGGAACA+TGG + chr3_1:85728518-85728537 Msa0382940:intron 50.0%
! GGTGACCGTGTAGAAGGTGT+TGG - chr3_1:85721563-85721582 None:intergenic 55.0%
GCAGCTATTGATGCTCCTGG+AGG + chr3_1:85722168-85722187 Msa0382940:intron 55.0%
!! GACCAATGAGAAGCACTCGG+AGG + chr3_1:85722239-85722258 Msa0382940:five_prime_UTR 55.0%
CACCTCCGAGTGCTTCTCAT+TGG - chr3_1:85722244-85722263 None:intergenic 55.0%
!! CAATGAGAAGCACTCGGAGG+TGG + chr3_1:85722242-85722261 Msa0382940:five_prime_UTR 55.0%
TGCTGTGACTGCTGAGGTTG+AGG - chr3_1:85722747-85722766 None:intergenic 55.0%
!! GGTAGCGCAAATGGGTTAGC+TGG + chr3_1:85722933-85722952 Msa0382940:five_prime_UTR 55.0%
GGTTAAAAGGTCCCCCACAG+AGG + chr3_1:85723003-85723022 Msa0382940:five_prime_UTR 55.0%
TCCCCCACAGAGGGATTCTT+TGG + chr3_1:85723013-85723032 Msa0382940:five_prime_UTR 55.0%
TTGAAGTCAGCTGCAGCTGG+TGG + chr3_1:85723195-85723214 Msa0382940:five_prime_UTR 55.0%
! GTTTTGCATGGCACTGCTGG+TGG + chr3_1:85723481-85723500 Msa0382940:five_prime_UTR 55.0%
GCTCGTAGTCAGCAACTACC+AGG + chr3_1:85723523-85723542 Msa0382940:five_prime_UTR 55.0%
GCAACTACCAGGGTCTACAC+CGG + chr3_1:85723534-85723553 Msa0382940:five_prime_UTR 55.0%
! CTATGGGGACAGAGGTGTAC+CGG - chr3_1:85723556-85723575 None:intergenic 55.0%
! GGTTTGGAGCAACTTCGCTC+TGG + chr3_1:85724005-85724024 Msa0382940:five_prime_UTR 55.0%
GGCTGAGGAGCCTGCATATA+AGG - chr3_1:85724050-85724069 None:intergenic 55.0%
GGATGGCCTTTCAAACCCTG+GGG + chr3_1:85724211-85724230 Msa0382940:five_prime_UTR 55.0%
GATGGCCTTTCAAACCCTGG+GGG + chr3_1:85724212-85724231 Msa0382940:five_prime_UTR 55.0%
TGTCACCCCCAGGGTTTGAA+AGG - chr3_1:85724220-85724239 None:intergenic 55.0%
GTATCTCCACGGGGAAAGGA+GGG - chr3_1:85724280-85724299 None:intergenic 55.0%
TGTATCTCCACGGGGAAAGG+AGG - chr3_1:85724281-85724300 None:intergenic 55.0%
CTCCCCCTACCTTATCTTGC+TGG - chr3_1:85724603-85724622 None:intergenic 55.0%
CAGCAAGATAAGGTAGGGGG+AGG + chr3_1:85724601-85724620 Msa0382940:CDS 55.0%
CAAGATAAGGTAGGGGGAGG+TGG + chr3_1:85724604-85724623 Msa0382940:CDS 55.0%
! AGGTGGTGGTAGTGTCACCA+TGG + chr3_1:85724621-85724640 Msa0382940:CDS 55.0%
! GGTGGTAGTGTCACCATGGA+TGG + chr3_1:85724625-85724644 Msa0382940:CDS 55.0%
GCAGGACCCGAAGAAGATAC+CGG - chr3_1:85725426-85725445 None:intergenic 55.0%
TCAGGAACGGCAAATACGGC+AGG + chr3_1:85725453-85725472 Msa0382940:CDS 55.0%
! AGGGGGCTGAACTTGGTGAT+GGG - chr3_1:85725479-85725498 None:intergenic 55.0%
GGCTGATGTGGATCGCTTTG+TGG + chr3_1:85725745-85725764 Msa0382940:CDS 55.0%
GTGGATCGCTTTGTGGACGA+TGG + chr3_1:85725752-85725771 Msa0382940:CDS 55.0%
CAACGGCCAACAGGATCTCT+AGG - chr3_1:85725827-85725846 None:intergenic 55.0%
AGAGTGGCACGCTTCAAGAC+TGG - chr3_1:85727030-85727049 None:intergenic 55.0%
GGATCCATCGGGAGAATTGC+TGG + chr3_1:85728239-85728258 Msa0382940:CDS 55.0%
GATGCCAGCAATTCTCCCGA+TGG - chr3_1:85728246-85728265 None:intergenic 55.0%
CTGTGAGTGAGGACTCTGTC+AGG + chr3_1:85728265-85728284 Msa0382940:CDS 55.0%
TCCAAAAGAGTGGAGGCGGT+GGG - chr3_1:85728782-85728801 None:intergenic 55.0%
TGCGCATGCTGTGACTGCTG+AGG - chr3_1:85722753-85722772 None:intergenic 60.0%
GGTTGTGGTTGTGGCTGCTG+CGG - chr3_1:85722873-85722892 None:intergenic 60.0%
CAGCTGGTGGTCAGCCTTCA+GGG + chr3_1:85723208-85723227 Msa0382940:five_prime_UTR 60.0%
! AGGTGTACCGGTGTAGACCC+TGG - chr3_1:85723544-85723563 None:intergenic 60.0%
GGATCACCTCTTCATGGCGG+TGG + chr3_1:85724254-85724273 Msa0382940:five_prime_UTR 60.0%
GATAAGGTAGGGGGAGGTGG+TGG + chr3_1:85724607-85724626 Msa0382940:CDS 60.0%
! GAGGGGGCTGAACTTGGTGA+TGG - chr3_1:85725480-85725499 None:intergenic 60.0%
GGAGTTGAGGGGGCTGAACT+TGG - chr3_1:85725486-85725505 None:intergenic 60.0%
! GCAAGGTACCTCCCTAGACG+AGG - chr3_1:85727966-85727985 None:intergenic 60.0%
! ACCCACCGCCTCCACTCTTT+TGG + chr3_1:85728778-85728797 Msa0382940:three_prime_UTR 60.0%
GTCCAAAAGAGTGGAGGCGG+TGG - chr3_1:85728783-85728802 None:intergenic 60.0%
GCAGCTGGTGGTCAGCCTTC+AGG + chr3_1:85723207-85723226 Msa0382940:five_prime_UTR 65.0%
CCTTCAGGACCCGCAGCTCT+GGG - chr3_1:85723675-85723694 None:intergenic 65.0%
TCCTTCAGGACCCGCAGCTC+TGG - chr3_1:85723676-85723695 None:intergenic 65.0%
GGCTGCTGCGGCTGCGATTG+TGG - chr3_1:85722861-85722880 None:intergenic 70.0%
CCCAGAGCTGCGGGTCCTGA+AGG + chr3_1:85723672-85723691 Msa0382940:five_prime_UTR 70.0%
GGAGGGCCACCGCCATGAAG+AGG - chr3_1:85724263-85724282 None:intergenic 70.0%
CGGTGGCCCTCCTTTCCCCG+TGG + chr3_1:85724271-85724290 Msa0382940:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85721429 85728962 85721429 ID=Msa0382940;Name=Msa0382940
chr3_1 mRNA 85721429 85728962 85721429 ID=Msa0382940-mRNA-1;Parent=Msa0382940;Name=Msa0382940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=1360|0.94|0.94|1|0.82|0.83|18|300|505
chr3_1 exon 85721429 85721624 85721429 ID=Msa0382940-mRNA-1:exon:22539;Parent=Msa0382940-mRNA-1
chr3_1 exon 85721935 85722032 85721935 ID=Msa0382940-mRNA-1:exon:22540;Parent=Msa0382940-mRNA-1
chr3_1 exon 85722172 85722281 85722172 ID=Msa0382940-mRNA-1:exon:22541;Parent=Msa0382940-mRNA-1
chr3_1 exon 85722690 85723052 85722690 ID=Msa0382940-mRNA-1:exon:22542;Parent=Msa0382940-mRNA-1
chr3_1 exon 85723141 85723229 85723141 ID=Msa0382940-mRNA-1:exon:22543;Parent=Msa0382940-mRNA-1
chr3_1 exon 85723477 85723555 85723477 ID=Msa0382940-mRNA-1:exon:22544;Parent=Msa0382940-mRNA-1
chr3_1 exon 85723639 85723714 85723639 ID=Msa0382940-mRNA-1:exon:22545;Parent=Msa0382940-mRNA-1
chr3_1 exon 85723828 85723877 85723828 ID=Msa0382940-mRNA-1:exon:22546;Parent=Msa0382940-mRNA-1
chr3_1 exon 85724005 85724315 85724005 ID=Msa0382940-mRNA-1:exon:22547;Parent=Msa0382940-mRNA-1
chr3_1 exon 85724463 85724681 85724463 ID=Msa0382940-mRNA-1:exon:22548;Parent=Msa0382940-mRNA-1
chr3_1 exon 85725387 85725632 85725387 ID=Msa0382940-mRNA-1:exon:22549;Parent=Msa0382940-mRNA-1
chr3_1 exon 85725719 85725863 85725719 ID=Msa0382940-mRNA-1:exon:22550;Parent=Msa0382940-mRNA-1
chr3_1 exon 85726475 85726584 85726475 ID=Msa0382940-mRNA-1:exon:22551;Parent=Msa0382940-mRNA-1
chr3_1 exon 85726758 85726907 85726758 ID=Msa0382940-mRNA-1:exon:22552;Parent=Msa0382940-mRNA-1
chr3_1 exon 85727633 85727788 85727633 ID=Msa0382940-mRNA-1:exon:22553;Parent=Msa0382940-mRNA-1
chr3_1 exon 85727936 85728052 85727936 ID=Msa0382940-mRNA-1:exon:22554;Parent=Msa0382940-mRNA-1
chr3_1 exon 85728207 85728425 85728207 ID=Msa0382940-mRNA-1:exon:22555;Parent=Msa0382940-mRNA-1
chr3_1 exon 85728519 85728962 85728519 ID=Msa0382940-mRNA-1:exon:22556;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85721429 85721624 85721429 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85721935 85722032 85721935 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85722172 85722281 85722172 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85722690 85723052 85722690 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85723141 85723229 85723141 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85723477 85723555 85723477 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85723639 85723714 85723639 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85723828 85723877 85723828 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 five_prime_UTR 85724005 85724303 85724005 ID=Msa0382940-mRNA-1:five_prime_utr;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85724304 85724315 85724304 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85724463 85724681 85724463 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85725387 85725632 85725387 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85725719 85725863 85725719 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85726475 85726584 85726475 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85726758 85726907 85726758 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85727633 85727788 85727633 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85727936 85728052 85727936 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85728207 85728425 85728207 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 CDS 85728519 85728662 85728519 ID=Msa0382940-mRNA-1:cds;Parent=Msa0382940-mRNA-1
chr3_1 three_prime_UTR 85728663 85728962 85728663 ID=Msa0382940-mRNA-1:three_prime_utr;Parent=Msa0382940-mRNA-1
Gene Sequence

>Msa0382940

ATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACAACAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAACAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGCAGCATGTCAAACTCATATCGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCGGTATCTTCTTCGGGTCCTGCAAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTGTTTCAATGCCTGCTTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGAAGGCTGATGTGGATCGCTTTGTGGACGATGGGTCTTTAGATGATAATGTAGAGTCTTTTTTATCGCAAGATGATACGGATCCTAGAGATCCTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTATGCGGATTCACTAAAACAAAAAGCTATTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTGCAAGCATGCCACGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACTTTTACGGGACATTCTACATCTGTCATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATATGTTCGTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAACGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCTGAAAACATCGTGTCTATACTTGATGTGGAAACACAGGCATGCCGATATTCATTAAAGGGTCACACAAAGACAATAGATTCTGTATGTTGGGATCCATCGGGAGAATTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGATTTGGACTCTTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTCCCTTCACTGCTCGTCATTGGTTGTTACCAGGCAAGTCCACGTCTTTATTTTCTTTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTAGTTGCTTCTGCCAGTCACGACAAGTTCATCAAGCTTTGGAAGTAA
Protein sequence

>Msa0382940

MLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSSLITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTLEGECVHELSCNGSKFHSCVFHPTFPSLLVIGCYQASPRLYFLSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK*