AlfalfaGEDB | Msa1371400

M. sativa cultivar zhongmu-4 / Msa1371400

KEGG: -
GO: GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF08513.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371400	XP_003603460.2	98.551	897	4	3	1	888	1	897	0.0	1807

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371400	sp\|Q9FUY2\|LEUNG_ARATH	72.164	758	178	8	152	888	186	931	0.0	1046

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371400	G7JBP5	98.551	897	4	3	1	888	1	897	0.0	1807

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TFs/TRs:

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Gene ID	Type	Classification
Msa1371400	TR	LUG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0382940	Msa1371400	0.916687	1.319657e-85	-8.615850e-47
Msa0432740	Msa1371400	0.903728	2.568408e-79	-8.615850e-47
Msa0432860	Msa1371400	0.906425	1.504711e-80	-8.615850e-47
Msa1371400	Msa1415610	0.845473	3.972335e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371400	MtrunA17_Chr3g0138311	98.551	897	4	3	1	888	1	897	0.0	1807
Msa1371400	MtrunA17_Chr1g0148791	83.222	751	99	9	152	888	165	902	0.0	1178
Msa1371400	MtrunA17_Chr1g0171711	56.103	426	162	7	479	888	370	786	9.09e-157	479
Msa1371400	MtrunA17_Chr1g0171711	44.144	333	110	14	1	316	1	274	1.34e-55	206
Msa1371400	MtrunA17_Chr7g0237271	51.300	423	176	9	482	888	376	784	1.03e-134	421
Msa1371400	MtrunA17_Chr7g0237271	45.646	333	99	10	2	314	8	278	1.02e-61	224
Msa1371400	MtrunA17_Chr4g0062881	48.235	425	174	10	474	888	69	457	1.75e-117	365
Msa1371400	MtrunA17_Chr2g0282401	47.463	335	155	5	573	888	456	788	1.33e-93	312
Msa1371400	MtrunA17_Chr4g0047051	40.146	274	154	4	624	888	36	308	1.01e-58	203
Msa1371400	MtrunA17_Chr4g0047071	39.576	283	150	8	624	888	3	282	6.99e-56	194

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371400	AT4G32551.1	72.164	758	178	8	152	888	186	931	0.0	1046
Msa1371400	AT4G32551.2	68.844	796	177	9	152	888	186	969	0.0	1030
Msa1371400	AT2G32700.2	54.225	426	169	9	479	888	372	787	7.10e-150	461
Msa1371400	AT2G32700.2	43.544	333	111	12	1	315	1	274	2.09e-52	197
Msa1371400	AT2G32700.5	54.225	426	169	9	479	888	372	787	7.10e-150	461
Msa1371400	AT2G32700.5	43.544	333	111	12	1	315	1	274	2.09e-52	197
Msa1371400	AT2G32700.1	54.225	426	169	9	479	888	372	787	7.10e-150	461
Msa1371400	AT2G32700.1	43.544	333	111	12	1	315	1	274	2.09e-52	197
Msa1371400	AT2G32700.4	54.225	426	169	9	479	888	372	787	7.10e-150	461
Msa1371400	AT2G32700.4	43.544	333	111	12	1	315	1	274	2.09e-52	197

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Find 224 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAACCGGTATCTTCTT+CGG	0.398253	tig0019197:+156176	Msa1371400:CDS
AAAGTATCATCTGACCCTGT+TGG	0.567966	tig0019197:+152777	Msa1371400:CDS
AAAGTGCGAAGAGAATACCC+AGG	0.782358	tig0019197:-158393	None:intergenic
AAATGATCACGTACTGTGAG+TGG	0.589381	tig0019197:-154628	None:intergenic
AAATGGGTTAGCTGGAAACC+CGG	0.578315	tig0019197:+153701	Msa1371400:CDS
AACAACAATTTGACTTTGAA+AGG	0.413556	tig0019197:+154601	Msa1371400:CDS
AACAACAGCAAAATAGAGAT+AGG	0.415075	tig0019197:+153655	Msa1371400:CDS
AACATTTGTAGTTGATGAAA+CGG	0.527598	tig0019197:-154827	None:intergenic
AACCAATGACGAGCAGTGAA+GGG	0.566783	tig0019197:-159131	None:intergenic
AACCATGTCTCAAACTAACT+GGG	0.603782	tig0019197:+152366	Msa1371400:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAAAAGAAAAGCCATGT+GGG	-	tig0019197:152444-152463	None:intergenic	30.0%
ATGCTATGCTAGTTAAAAGA+AGG	+	tig0019197:153083-153102	Msa1371400:intron	30.0%
AACAACGGTAACAAAGATAA+TGG	-	tig0019197:153335-153354	None:intergenic	30.0%
TGTTACCGTTGTTAAATTGA+TGG	+	tig0019197:153342-153361	Msa1371400:intron	30.0%
TGATTAATTGAGTCTGCATA+CGG	-	tig0019197:153449-153468	None:intergenic	30.0%
TATGCAGACTCAATTAATCA+AGG	+	tig0019197:153449-153468	Msa1371400:intron	30.0%
AACAACAGCAAAATAGAGAT+AGG	+	tig0019197:153655-153674	Msa1371400:CDS	30.0%
ACAACAGCAAAATAGAGATA+GGG	+	tig0019197:153656-153675	Msa1371400:CDS	30.0%
AATAGCAACAAAGATGTATG+AGG	+	tig0019197:153737-153756	Msa1371400:CDS	30.0%
ATGTATGAGGAAAGGTTAAA+AGG	+	tig0019197:153750-153769	Msa1371400:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019197	gene	152199	159722	152199	ID=Msa1371400;Name=Msa1371400
tig0019197	mRNA	152199	159722	152199	ID=Msa1371400-mRNA-1;Parent=Msa1371400;Name=Msa1371400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=171\|0.94\|0.94\|1\|0.88\|0.88\|18\|300\|888
tig0019197	exon	152199	152401	152199	ID=Msa1371400-mRNA-1:exon:2208;Parent=Msa1371400-mRNA-1
tig0019197	exon	152701	152798	152701	ID=Msa1371400-mRNA-1:exon:2209;Parent=Msa1371400-mRNA-1
tig0019197	exon	152938	153047	152938	ID=Msa1371400-mRNA-1:exon:2210;Parent=Msa1371400-mRNA-1
tig0019197	exon	153456	153812	153456	ID=Msa1371400-mRNA-1:exon:2211;Parent=Msa1371400-mRNA-1
tig0019197	exon	153901	153989	153901	ID=Msa1371400-mRNA-1:exon:2212;Parent=Msa1371400-mRNA-1
tig0019197	exon	154236	154314	154236	ID=Msa1371400-mRNA-1:exon:2213;Parent=Msa1371400-mRNA-1
tig0019197	exon	154398	154473	154398	ID=Msa1371400-mRNA-1:exon:2214;Parent=Msa1371400-mRNA-1
tig0019197	exon	154587	154636	154587	ID=Msa1371400-mRNA-1:exon:2215;Parent=Msa1371400-mRNA-1
tig0019197	exon	154764	155075	154764	ID=Msa1371400-mRNA-1:exon:2216;Parent=Msa1371400-mRNA-1
tig0019197	exon	155223	155441	155223	ID=Msa1371400-mRNA-1:exon:2217;Parent=Msa1371400-mRNA-1
tig0019197	exon	156147	156392	156147	ID=Msa1371400-mRNA-1:exon:2218;Parent=Msa1371400-mRNA-1
tig0019197	exon	156479	156623	156479	ID=Msa1371400-mRNA-1:exon:2219;Parent=Msa1371400-mRNA-1
tig0019197	exon	157235	157344	157235	ID=Msa1371400-mRNA-1:exon:2220;Parent=Msa1371400-mRNA-1
tig0019197	exon	157518	157667	157518	ID=Msa1371400-mRNA-1:exon:2221;Parent=Msa1371400-mRNA-1
tig0019197	exon	158393	158548	158393	ID=Msa1371400-mRNA-1:exon:2222;Parent=Msa1371400-mRNA-1
tig0019197	exon	158696	158812	158696	ID=Msa1371400-mRNA-1:exon:2223;Parent=Msa1371400-mRNA-1
tig0019197	exon	158967	159143	158967	ID=Msa1371400-mRNA-1:exon:2224;Parent=Msa1371400-mRNA-1
tig0019197	exon	159279	159722	159279	ID=Msa1371400-mRNA-1:exon:2225;Parent=Msa1371400-mRNA-1
tig0019197	five_prime_UTR	152199	152369	152199	ID=Msa1371400-mRNA-1:five_prime_utr;Parent=Msa1371400-mRNA-1
tig0019197	CDS	152370	152401	152370	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	152701	152798	152701	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	152938	153047	152938	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	153456	153812	153456	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	153901	153989	153901	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	154236	154314	154236	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	154398	154473	154398	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	154587	154636	154587	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	154764	155075	154764	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	155223	155441	155223	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	156147	156392	156147	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	156479	156623	156479	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	157235	157344	157235	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	157518	157667	157518	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	158393	158548	158393	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	158696	158812	158696	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	158967	159143	158967	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	CDS	159279	159422	159279	ID=Msa1371400-mRNA-1:cds;Parent=Msa1371400-mRNA-1
tig0019197	three_prime_UTR	159423	159722	159423	ID=Msa1371400-mRNA-1:three_prime_utr;Parent=Msa1371400-mRNA-1

Gene Sequence

>Msa1371400

ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTTAAGAGGGATTTGAAAGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCATCTGACCCTGTTGCTATTGATGCTCCTGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGATATTTTCATTGCAAGGACCAATGAGAAGCACTCGGAGGTGGCTGCATCATATATAGAGACTCAATTAATCAAGGCAAGGGAACAACAGCAACAGCAACAACAACAGCAGCAGCCTCAACCTCAGCAGTCACAGCATGCGCAGCAGCAGCAACACATGCAGATGCAACAACTTCTGATGCAGAGACATGCACAGCAGCAGCAACAGCAGCAGCAGCATCAGCAACAGCCACAATCGCAGCCGCAGCAGCCACAACCACAACAACAGCAAAATAGAGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGCTGGAAACCCGGCAACTGCTAATGCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGGTCCCCCACAGAGGGATTCTTTGGATGACGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAGCTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTGGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACACCGGACATAAAGAGTGAGATAAATCCGGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGTTAGGAATTTCTGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCGTTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGTCATCACCATCTGCCAGTGAAGAAAGTAGAAGGCTGAGAATGCTTCTGAATAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCAAACCCTGGGGGTGACATGTTATCGAATGTTGGATCACCTCTTCATGGCGGTGGCCCTCCTTTTCCCCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACAACAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAACAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGCAGCATGTCAAACTCATATCGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCGGTATCTTCTTCGGGTCCTGCAAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTGTTTCAATGCCTGCTTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGAAGGCTGATGTGGATCGCTTTGTGGACGATGGGTCTTTAGATGATAATGTAGAGTCTTTTTTATCGCAAGATGATACGGATCCTAGAGATCCTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTATGCGGATTCACTAAAACAAAAAGCTATTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTGCAAGCATGCCACGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACTTTTACGGGACATTCTACATCTGTCATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATATGTTCGTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAACGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCTGAAAACATCGTGTCTATACTTGATGTGGAAACACAGGCATGCCGATATTCATTAAAGGGTCACACAAAGACAATAGATTCTGTATGTTGGGATCCATCGGGAGAATTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGATTTGGACTCTTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTCCCTTCACTGCTCTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTAGTTGCTTCTGCCAGTCACGACAAGTTCATCAAGCTTTGGAAGTAA

Protein sequence

>Msa1371400

MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQPQPQQSQHAQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRAHLLNGSANGLAGNPATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLSSPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSSLITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTLEGECVHELSCNGSKFHSCVFHPTFPSLLSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK*