AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383790 MtrunA17_Chr3g0140431 94.872 624 2 2 88 707 1 598 0.0 1229
Msa0383790 MtrunA17_Chr1g0146301 76.050 714 131 7 2 707 3 684 0.0 1102
Msa0383790 MtrunA17_Chr7g0214531 75.362 621 121 2 92 706 4 598 0.0 1011
Msa0383790 MtrunA17_Chr8g0340491 74.960 631 123 4 85 707 88 691 0.0 972
Msa0383790 MtrunA17_Chr1g0213321 71.994 632 144 4 82 706 70 675 0.0 969
Msa0383790 MtrunA17_Chr7g0253211 72.285 617 140 2 95 706 294 884 0.0 958
Msa0383790 MtrunA17_Chr4g0071031 36.789 299 152 6 125 420 9 273 7.87e-55 194
Msa0383790 MtrunA17_Chr2g0329981 35.786 299 155 6 125 420 9 273 1.76e-53 191
Msa0383790 MtrunA17_Chr2g0299661 35.786 299 155 6 125 420 9 273 1.13e-52 189
Msa0383790 MtrunA17_Chr1g0166821 35.738 305 157 7 119 420 6 274 1.18e-51 186
Msa0383790 MtrunA17_Chr8g0342821 35.836 293 150 7 125 414 9 266 1.30e-51 186
Msa0383790 MtrunA17_Chr7g0261501 35.786 299 155 6 125 420 9 273 1.42e-51 186
Msa0383790 MtrunA17_Chr1g0187571 35.738 305 157 7 119 420 6 274 1.35e-50 183
Msa0383790 MtrunA17_Chr1g0183631 34.426 305 161 7 119 420 5 273 2.32e-49 179
Msa0383790 MtrunA17_Chr1g0167261 35.275 309 159 7 117 420 4 276 1.20e-48 174
Msa0383790 MtrunA17_Chr3g0140071 33.770 305 163 7 119 420 5 273 1.34e-48 177
Msa0383790 MtrunA17_Chr1g0146151 34.304 309 163 8 115 420 2 273 2.63e-48 176
Msa0383790 MtrunA17_Chr8g0390211 34.754 305 160 7 119 420 5 273 5.14e-48 175
Msa0383790 MtrunA17_Chr6g0486611 33.779 299 161 7 125 420 9 273 9.90e-48 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383790 AT2G25760.1 72.879 719 137 9 1 707 1 673 0.0 1073
Msa0383790 AT2G25760.2 72.299 722 139 10 1 707 1 676 0.0 1064
Msa0383790 AT3G13670.1 67.594 719 184 8 1 707 22 703 0.0 996
Msa0383790 AT3G03940.1 71.203 632 149 3 82 706 95 700 0.0 961
Msa0383790 AT5G18190.2 71.338 628 147 3 86 706 89 690 0.0 957
Msa0383790 AT5G18190.1 71.338 628 147 3 86 706 89 690 0.0 957
Msa0383790 AT3G03930.1 69.388 245 74 1 463 706 43 287 4.64e-121 363
Msa0383790 AT1G03930.1 36.482 307 156 7 117 420 3 273 3.18e-54 194
Msa0383790 AT4G26100.1 36.120 299 154 6 125 420 9 273 1.21e-53 191
Msa0383790 AT2G19470.1 36.455 299 153 6 125 420 9 273 4.83e-53 189
Msa0383790 AT5G44100.1 35.410 305 158 7 119 420 5 273 4.91e-53 191
Msa0383790 AT5G44100.2 35.410 305 158 7 119 420 5 273 4.91e-53 191
Msa0383790 AT3G23340.1 36.393 305 155 7 119 420 5 273 6.69e-53 189
Msa0383790 AT1G72710.1 36.120 299 153 7 125 420 9 272 8.33e-52 187
Msa0383790 AT5G57015.1 35.452 299 156 6 125 420 9 273 1.12e-51 186
Msa0383790 AT4G14340.2 36.066 305 156 7 119 420 11 279 1.13e-51 184
Msa0383790 AT4G14340.1 36.066 305 156 7 119 420 11 279 2.13e-51 186
Msa0383790 AT5G43320.1 36.066 305 156 7 119 420 5 273 7.23e-51 184
Msa0383790 AT4G28540.1 35.082 305 159 7 119 420 9 277 9.84e-51 184
Msa0383790 AT5G43320.2 36.066 305 156 7 119 420 5 273 5.70e-50 179
Msa0383790 AT5G43320.3 36.066 305 156 7 119 420 5 273 5.70e-50 179
Msa0383790 AT1G04440.1 35.082 305 159 7 119 420 5 273 1.30e-49 181
Msa0383790 AT4G28860.2 34.754 305 160 7 119 420 5 273 3.55e-49 177
Msa0383790 AT4G28860.1 34.754 305 160 7 119 420 5 273 1.00e-48 177
Msa0383790 AT4G28880.3 35.082 305 159 7 119 420 5 273 1.76e-48 176
Msa0383790 AT4G28880.2 35.082 305 159 7 119 420 5 273 1.76e-48 176
Msa0383790 AT4G28880.1 35.082 305 159 7 119 420 5 273 1.76e-48 176
Msa0383790 AT4G28880.4 35.082 305 159 7 119 420 5 273 1.76e-48 176
Msa0383790 AT3G23340.2 35.540 287 148 6 137 420 7 259 4.92e-46 170
Msa0383790 AT4G08800.1 31.104 299 137 7 125 420 9 241 1.65e-37 142

Find 240 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGCTACACCTTTCTTTA+TGG 0.140701 3_1:+86815482 Msa0383790:three_prime_UTR
GACCTACAATTCCATCAAAA+AGG 0.194189 3_1:-86813849 None:intergenic
AATGCACCAACCTATGTATT+TGG 0.203168 3_1:+86815949 Msa0383790:three_prime_UTR
TCTGAGCACCCTCGGTATTT+AGG 0.209029 3_1:-86813891 None:intergenic
CCCATTCGGACCTTCTTCTT+TGG 0.219272 3_1:-86814071 None:intergenic
ACAATGTATAATGAGATATT+AGG 0.235440 3_1:-86810503 None:intergenic
TTTGAAAATAATACAGTATA+TGG 0.236549 3_1:-86815928 None:intergenic
CTGAGCACCCTCGGTATTTA+GGG 0.247642 3_1:-86813890 None:intergenic
CTTTCCCAACACATTGTAAA+AGG 0.251961 3_1:+86814257 Msa0383790:CDS
TGGCTTCTTGTGCTAGTCTT+TGG 0.253271 3_1:+86814309 Msa0383790:CDS
AAGCTTGGGAAGGGAGGATT+TGG 0.257494 3_1:+86811217 Msa0383790:CDS
TGTTTCACAGGAATGGATTA+TGG 0.259630 3_1:+86814525 Msa0383790:intron
ATCAACGCCCAGATGTATTT+AGG 0.259852 3_1:+86813350 Msa0383790:CDS
CTTCTGCCTCCGATTCCTTC+TGG 0.270294 3_1:-86810722 None:intergenic
AAACGAGTCACTGACTTTAT+AGG 0.282911 3_1:-86814782 None:intergenic
GGCTTCTTGTGCTAGTCTTT+GGG 0.284395 3_1:+86814310 Msa0383790:CDS
GCGGATCTCTCTCATCTTCA+TGG 0.287539 3_1:+86810581 Msa0383790:five_prime_UTR
GGCTCCTCAATGTCTGAATT+TGG 0.290706 3_1:+86815799 Msa0383790:three_prime_UTR
ATATGCTTGGCTCTAGTCTA+TGG 0.295213 3_1:+86811900 Msa0383790:CDS
TGGCCACTGCTGGCACTAGA+TGG 0.300589 3_1:+86814857 Msa0383790:CDS
TAAGAAGAGGGCAGTGGTTA+GGG 0.302713 3_1:+86810843 Msa0383790:CDS
TATAGGATTGTTGCATGTAT+TGG 0.306085 3_1:-86814765 None:intergenic
GCTCAAAACCTTTGTTTCAT+TGG 0.309003 3_1:-86814137 None:intergenic
AGGGGCCTAATGTCAGGATT+TGG 0.316161 3_1:-86813871 None:intergenic
GCTCTAGTCTATGGGATGTT+TGG 0.316967 3_1:+86811909 Msa0383790:CDS
CAATGTATAATGAGATATTA+GGG 0.327105 3_1:-86810502 None:intergenic
TTCGGCTCCCGGAGCTTTAT+CGG 0.329884 3_1:-86810914 None:intergenic
ATAGGATTGTTGCATGTATT+GGG 0.335579 3_1:-86814764 None:intergenic
TTTCTGGTTGATCTTGGATT+AGG 0.337171 3_1:+86813205 Msa0383790:CDS
ACCAACCTTGTGAAGAAAAC+TGG 0.342759 3_1:-86814387 None:intergenic
TAGTCTTTGGGCACTCATTA+TGG 0.347322 3_1:+86814322 Msa0383790:CDS
GTGAATAACGACGACGAAAC+AGG 0.354236 3_1:+86810787 Msa0383790:CDS
TGGGAGAACAGTTTCATAAA+TGG 0.360026 3_1:+86815322 Msa0383790:exon
ATAAGAAGAGGGCAGTGGTT+AGG 0.362750 3_1:+86810842 Msa0383790:CDS
ACACTAATCCACTGTGTTGC+TGG 0.363197 3_1:-86814098 None:intergenic
GTTACCTTGGCAAGGATATC+AGG 0.363733 3_1:+86813568 Msa0383790:CDS
TTCCTATCTAATCTATATAA+TGG 0.369860 3_1:-86811196 None:intergenic
CTCCCTTCTTCTTCGGCTCC+CGG 0.370094 3_1:-86810925 None:intergenic
AGAACAAACCTAAATACATC+TGG 0.381852 3_1:-86813358 None:intergenic
TTGTTACAGGGAGAAAATAA+AGG 0.383335 3_1:+86813688 Msa0383790:intron
GCAAGGTGACTACTACATTA+TGG 0.384482 3_1:+86811789 Msa0383790:CDS
CTCATTATGGATGCTGGCAC+TGG 0.386456 3_1:+86814335 Msa0383790:CDS
AACAGTAATTATTATGTTGA+AGG 0.391003 3_1:+86815641 Msa0383790:three_prime_UTR
AACAGCAAAGGGTGCAATTA+CGG 0.391275 3_1:+86811592 Msa0383790:CDS
TATAGATTAGATAGGAAGCT+TGG 0.395411 3_1:+86811202 Msa0383790:CDS
TATATCGCATCTATTAGTTA+TGG 0.395955 3_1:+86815302 Msa0383790:CDS
AACTTCTTGCTTGGACCCTC+GGG 0.405644 3_1:+86813160 Msa0383790:CDS
CGCCGCCGGTCGCCGGCGGG+AGG 0.407045 3_1:+86810671 Msa0383790:CDS
ACGCGCCGCCGGTCGCCGGC+GGG 0.411110 3_1:+86810668 Msa0383790:CDS
GTGACTCGTTTCCATTTAAG+TGG 0.412212 3_1:+86814794 Msa0383790:CDS
AGTTGTACTCCCTTCTTCTT+CGG 0.412608 3_1:-86810932 None:intergenic
ACTTCACTTATCAATGACTT+TGG 0.416588 3_1:+86810551 Msa0383790:five_prime_UTR
TCAATGTCTGAATTTGGCCT+TGG 0.421015 3_1:+86815805 Msa0383790:three_prime_UTR
AAGTTGTTTCTGGTTGATCT+TGG 0.425523 3_1:+86813199 Msa0383790:CDS
CTCCATTATATAGATTAGAT+AGG 0.426261 3_1:+86811194 Msa0383790:CDS
ATATCGCATCTATTAGTTAT+GGG 0.426501 3_1:+86815303 Msa0383790:CDS
GGAATCAAAATCACCTTCTC+AGG 0.426563 3_1:-86810961 None:intergenic
ATTGTTATGTCCCGTGGTGC+TGG 0.431009 3_1:+86814883 Msa0383790:CDS
CGACGCGTAGGAGCTGGTTC+TGG 0.431637 3_1:+86811256 Msa0383790:CDS
AAACTTCTTGCTTGGACCCT+CGG 0.431706 3_1:+86813159 Msa0383790:CDS
GATAGGAAGCTTGGGAAGGG+AGG 0.432226 3_1:+86811211 Msa0383790:CDS
TTCTTCGTGGTCGGTTACCT+TGG 0.433456 3_1:+86813555 Msa0383790:CDS
CAAAAGCAACACAAAGCTTC+GGG 0.436504 3_1:-86813745 None:intergenic
AACGCGCCGCCGGTCGCCGG+CGG 0.437647 3_1:+86810667 Msa0383790:CDS
CCTTCTGGTCTGTGCGGCGG+TGG 0.439587 3_1:-86810707 None:intergenic
GTCACTGCTATGGCCACTGC+TGG 0.440107 3_1:+86814847 Msa0383790:CDS
AGCGTTTCTTGAGTTTCATC+AGG 0.442256 3_1:-86815143 None:intergenic
ACGCTTGTCTTCCTTCTTCG+TGG 0.445559 3_1:+86813542 Msa0383790:CDS
TAGGTCCAAATCCTGACATT+AGG 0.445820 3_1:+86813866 Msa0383790:CDS
ACAAAAGCAACACAAAGCTT+CGG 0.446009 3_1:-86813746 None:intergenic
AAAATAAAAGCAGCTTGATC+AGG 0.446910 3_1:-86815098 None:intergenic
AAGCCTGAAAACTTCTTGCT+TGG 0.452042 3_1:+86813151 Msa0383790:CDS
GTATTTAGGGGCCTAATGTC+AGG 0.452090 3_1:-86813877 None:intergenic
CGTTGGCGTGATAGTTCAAC+TGG 0.453748 3_1:+86813310 Msa0383790:CDS
CTGTGCGGCGGTGGCAGCGA+CGG 0.454161 3_1:-86810698 None:intergenic
TTTACCTTAACATGAGTACT+AGG 0.455799 3_1:-86815182 None:intergenic
TATTACATCAGTGCCATAGC+TGG 0.456706 3_1:+86814565 Msa0383790:CDS
GTTGGCCGACGCGTAGGAGC+TGG 0.466210 3_1:+86811250 Msa0383790:CDS
GGTTTGTGATGAGAGGGAAA+TGG 0.469323 3_1:-86810481 None:intergenic
AAAATCACCTTCTCAGGAAG+TGG 0.470398 3_1:-86810955 None:intergenic
CTCCTCCCGCCGGCGACCGG+CGG 0.471128 3_1:-86810673 None:intergenic
GCTCTCCTCCCGCCGGCGAC+CGG 0.471790 3_1:-86810676 None:intergenic
TGGGCACTCATTATGGATGC+TGG 0.472875 3_1:+86814329 Msa0383790:CDS
AGCTAGTAACGGGTCCTCAT+TGG 0.474983 3_1:+86814588 Msa0383790:CDS
ATCTAGGATGTCTACTGAAA+TGG 0.475531 3_1:+86812046 Msa0383790:intron
CGAGGTCGGGTACGCAACTC+AGG 0.476552 3_1:-86810625 None:intergenic
GATAACGCGCCGCCGGTCGC+CGG 0.478774 3_1:+86810664 Msa0383790:CDS
TCATTGGTTGTAATGTCAAA+AGG 0.480800 3_1:+86814604 Msa0383790:CDS
AGCTTGGGAAGGGAGGATTT+GGG 0.483807 3_1:+86811218 Msa0383790:CDS
CTACATATTCTACAAACTGC+CGG 0.484853 3_1:-86813780 None:intergenic
AACTAATAGATGCGATATAG+AGG 0.485124 3_1:-86815298 None:intergenic
ATTGTAAAAGGAAATGAAGA+TGG 0.488040 3_1:+86814269 Msa0383790:CDS
GGAAGACAAGCGTGTAAGCA+AGG 0.490386 3_1:-86813532 None:intergenic
ATAGATTAGATAGGAAGCTT+GGG 0.491550 3_1:+86811203 Msa0383790:CDS
CCGCACAGACCAGAAGGAAT+CGG 0.493586 3_1:+86810713 Msa0383790:CDS
CTCTGTAAATCCAGCACCAC+GGG 0.494784 3_1:-86814893 None:intergenic
TTCATCATCATCCTCTTCCA+TGG 0.494964 3_1:-86814045 None:intergenic
TAGGTCAAAATCATATCAGC+TGG 0.495543 3_1:-86815363 None:intergenic
GTGTTGCTGGCTGACCCATT+CGG 0.496471 3_1:-86814085 None:intergenic
ATTGACAATGAAAGCATCAA+AGG 0.497939 3_1:-86813248 None:intergenic
AGGAAGGAGAGAATAAGAAG+AGG 0.503129 3_1:+86810830 Msa0383790:CDS
TTAGATAGGAAGCTTGGGAA+GGG 0.503149 3_1:+86811208 Msa0383790:CDS
CGTAGTGCCGATAAAGCTCC+GGG 0.503731 3_1:+86810907 Msa0383790:CDS
GCTCCGGGAGCCGAAGAAGA+AGG 0.504739 3_1:+86810922 Msa0383790:CDS
CCGTAGTGCCGATAAAGCTC+CGG 0.505206 3_1:+86810906 Msa0383790:CDS
ATTACGCTATTACAAACTGC+TGG 0.506619 3_1:-86815850 None:intergenic
CTTGCCTACACATCTGAGTT+GGG 0.508086 3_1:+86815400 Msa0383790:three_prime_UTR
CAATGACTTTGGAACTTTCG+CGG 0.508202 3_1:+86810562 Msa0383790:five_prime_UTR
GGAAGGAGAGAATAAGAAGA+GGG 0.512026 3_1:+86810831 Msa0383790:CDS
CCATAGCTGGAGCTAGTAAC+GGG 0.513636 3_1:+86814578 Msa0383790:CDS
AGAGAATAAGAAGAGGGCAG+TGG 0.514229 3_1:+86810837 Msa0383790:CDS
ATTAGATAGGAAGCTTGGGA+AGG 0.514540 3_1:+86811207 Msa0383790:CDS
ATTCTACAAGAAATTTATCA+TGG 0.514722 3_1:-86815436 None:intergenic
TATTAGGGTTTGTGATGAGA+GGG 0.517092 3_1:-86810487 None:intergenic
ATATTAGGGTTTGTGATGAG+AGG 0.520286 3_1:-86810488 None:intergenic
TTGTCTTCCTTCTTCGTGGT+CGG 0.524778 3_1:+86813546 Msa0383790:CDS
GCTATGGATGAGTACGATAG+TGG 0.525051 3_1:+86810880 Msa0383790:CDS
TGTAGAATGCAGTTCAGCAT+TGG 0.526609 3_1:+86815451 Msa0383790:three_prime_UTR
CTTCGATGAATACCTTCACT+AGG 0.528484 3_1:-86815035 None:intergenic
TAGCTTTAAATCAAGAGGTA+AGG 0.529304 3_1:-86815770 None:intergenic
TTCTCATCAGGGGTTCCCGA+GGG 0.529311 3_1:-86813175 None:intergenic
GCTTGCCTACACATCTGAGT+TGG 0.529392 3_1:+86815399 Msa0383790:three_prime_UTR
GGATTTGGGCAAGTCTATGT+TGG 0.531558 3_1:+86811232 Msa0383790:CDS
GAATACCTTCACTAGGGTAC+AGG 0.532543 3_1:-86815028 None:intergenic
CCAAAGAAGAAGGTCCGAAT+GGG 0.533192 3_1:+86814071 Msa0383790:CDS
TGAAGTATCGTATATAAGAG+AGG 0.533311 3_1:-86810534 None:intergenic
TAATTACAGATTCAAGTTGG+TGG 0.534253 3_1:+86811169 Msa0383790:intron
ATGATGACAACCATAAAGAA+AGG 0.534545 3_1:-86815492 None:intergenic
AGGACGATTGACCATGGAAG+AGG 0.534909 3_1:+86814034 Msa0383790:CDS
TTATAGCACCCAGTTCCCGC+TGG 0.535540 3_1:-86815717 None:intergenic
ATTACGGACCTCCACATGAA+TGG 0.537264 3_1:+86811608 Msa0383790:CDS
TCTTAATTACAGATTCAAGT+TGG 0.538540 3_1:+86811166 Msa0383790:intron
ACAAACTGCCGGAAAGGTGC+AGG 0.538874 3_1:-86813769 None:intergenic
TATGCTTGGCTCTAGTCTAT+GGG 0.539645 3_1:+86811901 Msa0383790:CDS
AGCTGGTTCTGGTGCCGTTG+AGG 0.543472 3_1:+86811267 Msa0383790:CDS
GGTTTCTAGAGAGGAAGCTA+TGG 0.545782 3_1:+86810864 Msa0383790:CDS
AAGAAACCAAATACATAGGT+TGG 0.545816 3_1:-86815955 None:intergenic
GAGACGGTTTATGCGAGGTC+GGG 0.546267 3_1:-86810638 None:intergenic
CGGACCTCCACATGAATGGC+AGG 0.546511 3_1:+86811612 Msa0383790:CDS
TGGTGCTGGATTTACAGAGC+AGG 0.546908 3_1:+86814897 Msa0383790:CDS
GAGAGATTGAAAGAAGAGGA+AGG 0.548043 3_1:+86810814 Msa0383790:CDS
GGCCACTGCTGGCACTAGAT+GGG 0.549197 3_1:+86814858 Msa0383790:CDS
AAGGTAACCGACCACGAAGA+AGG 0.552994 3_1:-86813553 None:intergenic
GTGAAGGTATTCATCGAAGG+TGG 0.556433 3_1:+86815039 Msa0383790:CDS
TTTCTCATCAGGGGTTCCCG+AGG 0.557461 3_1:-86813176 None:intergenic
CTCCGGGAGCCGAAGAAGAA+GGG 0.558776 3_1:+86810923 Msa0383790:CDS
TGAGCACCCTCGGTATTTAG+GGG 0.558929 3_1:-86813889 None:intergenic
ACTCAGATGTGTAGGCAAGC+GGG 0.559158 3_1:-86815396 None:intergenic
TGATGAACAACCAAAGAAGA+AGG 0.560213 3_1:+86814061 Msa0383790:CDS
AGTGGTTAGGGTTTCTAGAG+AGG 0.560234 3_1:+86810855 Msa0383790:CDS
TTGACAATGAAAGCATCAAA+GGG 0.560574 3_1:-86813247 None:intergenic
AGGAATGGATTATGGAACAG+TGG 0.562856 3_1:+86814533 Msa0383790:intron
GAAGTATCGTATATAAGAGA+GGG 0.563011 3_1:-86810533 None:intergenic
AAGTAGGCCTACCTTGTACT+TGG 0.563694 3_1:+86815738 Msa0383790:three_prime_UTR
CGTGGTCGGTTACCTTGGCA+AGG 0.564377 3_1:+86813560 Msa0383790:CDS
ATTCAGACATTGAGGAGCCT+CGG 0.564430 3_1:-86815795 None:intergenic
AAATACCGAGGGTGCTCAGA+AGG 0.565005 3_1:+86813894 Msa0383790:CDS
CACGAGTACATTACAAGGGA+CGG 0.566096 3_1:+86811767 Msa0383790:CDS
AGTAGAGAGATTGAAAGAAG+AGG 0.566314 3_1:+86810810 Msa0383790:CDS
GGATAAAAGAGCCAAGTACA+AGG 0.566325 3_1:-86815749 None:intergenic
TTTAGAGATCTGTGATGGGA+GGG 0.566369 3_1:-86810453 None:intergenic
GGGAACTGGGTGCTATAAGT+AGG 0.567142 3_1:+86815722 Msa0383790:three_prime_UTR
GCTAGTGTGCATGCACATCT+TGG 0.567152 3_1:+86813476 Msa0383790:CDS
GAAAGCATCAAAGGGTAACA+TGG 0.567495 3_1:-86813239 None:intergenic
AAGTAGCAGGAGAGATGACT+TGG 0.570146 3_1:+86813505 Msa0383790:CDS
TAGAGAAGATGCATTGTAGA+GGG 0.572443 3_1:+86812102 Msa0383790:CDS
AAGTGTTTAGAGATCTGTGA+TGG 0.573312 3_1:-86810458 None:intergenic
CCACCGCCGCACAGACCAGA+AGG 0.573426 3_1:+86810707 Msa0383790:CDS
ACCAAAGAAGAAGGTCCGAA+TGG 0.576715 3_1:+86814070 Msa0383790:CDS
CGGAGTAGCTTTAAATCAAG+AGG 0.576803 3_1:-86815775 None:intergenic
TATTCTACAAACTGCCGGAA+AGG 0.578047 3_1:-86813775 None:intergenic
GTTTCTTGAGTTTCATCAGG+TGG 0.578812 3_1:-86815140 None:intergenic
ACACAAAGCTTCGGGTGAAG+TGG 0.580070 3_1:-86813737 None:intergenic
ACACAGGTCATGGATATGCT+TGG 0.581027 3_1:+86811887 Msa0383790:intron
GCCATAGCTGGAGCTAGTAA+CGG 0.586802 3_1:+86814577 Msa0383790:CDS
GAACAAACCTAAATACATCT+GGG 0.586854 3_1:-86813357 None:intergenic
TGTTCCACGAGTACATTACA+AGG 0.586861 3_1:+86811762 Msa0383790:CDS
GGAATGGATTATGGAACAGT+GGG 0.588580 3_1:+86814534 Msa0383790:intron
GTCTATGTTGGCCGACGCGT+AGG 0.589738 3_1:+86811244 Msa0383790:CDS
TACAACTCCACTTCCTGAGA+AGG 0.591492 3_1:+86810948 Msa0383790:CDS
GTGTTGGGAAAGCCGCTCAT+CGG 0.591532 3_1:-86814246 None:intergenic
ATCTTGGTAGAACAAGTAGC+AGG 0.592624 3_1:+86813492 Msa0383790:CDS
AGTTCCCAACTCAGATGTGT+AGG 0.592708 3_1:-86815404 None:intergenic
TTAGAGAAGATGCATTGTAG+AGG 0.593386 3_1:+86812101 Msa0383790:CDS
AACTCAGATGTGTAGGCAAG+CGG 0.596134 3_1:-86815397 None:intergenic
TGAGACGGTTTATGCGAGGT+CGG 0.596794 3_1:-86810639 None:intergenic
AGCACATTAGGTGGTAGTCA+TGG 0.600563 3_1:+86811739 Msa0383790:intron
TCTCACTGATAACGCGCCGC+CGG 0.600651 3_1:+86810657 Msa0383790:CDS
AGCGACGGCTCTCCTCCCGC+CGG 0.600658 3_1:-86810683 None:intergenic
ATAACCTGATATCCTTGCCA+AGG 0.602758 3_1:-86813572 None:intergenic
AAAAGAGCCAAGTACAAGGT+AGG 0.604138 3_1:-86815745 None:intergenic
AAGGCCAAATTCAGACATTG+AGG 0.604160 3_1:-86815803 None:intergenic
GTTGATCATAATCAACATGA+AGG 0.605161 3_1:-86813333 None:intergenic
TTGTAATAGCGTAATCATTG+TGG 0.606706 3_1:+86815858 Msa0383790:three_prime_UTR
GATTTCCTGTACCCTAGTGA+AGG 0.606757 3_1:+86815023 Msa0383790:CDS
CACAGACCAGAAGGAATCGG+AGG 0.609955 3_1:+86810716 Msa0383790:CDS
TGAAGGTATTCATCGAAGGT+GGG 0.610628 3_1:+86815040 Msa0383790:CDS
CTCGTAGACCAATGAAACAA+AGG 0.611155 3_1:+86814129 Msa0383790:CDS
TTGTAAACCTGCCATTCATG+TGG 0.611605 3_1:-86811619 None:intergenic
TAGGATGTCTACTGAAATGG+TGG 0.612266 3_1:+86812049 Msa0383790:intron
TTGAGCATAGAAACAGCAAA+GGG 0.612579 3_1:+86811581 Msa0383790:CDS
CCCGTTACTAGCTCCAGCTA+TGG 0.614186 3_1:-86814578 None:intergenic
TTTGAGCATAGAAACAGCAA+AGG 0.615974 3_1:+86811580 Msa0383790:CDS
AAGTACCTTCTGAGCACCCT+CGG 0.619914 3_1:-86813899 None:intergenic
CCCAAAGAAACCAAATACAT+AGG 0.620931 3_1:-86815959 None:intergenic
AAAGAGAGGACGATTGACCA+TGG 0.622958 3_1:+86814028 Msa0383790:CDS
ATTCCTTCTGGTCTGTGCGG+CGG 0.623393 3_1:-86810710 None:intergenic
TTCGATGAATACCTTCACTA+GGG 0.624580 3_1:-86815034 None:intergenic
CGTCCCTTGTAATGTACTCG+TGG 0.624983 3_1:-86811766 None:intergenic
GGTGGCATGTATTGCAATCG+AGG 0.627258 3_1:+86812067 Msa0383790:CDS
CCGGAGCTTTATCGGCACTA+CGG 0.627559 3_1:-86810906 None:intergenic
GTTTAGAGATCTGTGATGGG+AGG 0.627689 3_1:-86810454 None:intergenic
TAAACCTGCCATTCATGTGG+AGG 0.628206 3_1:-86811616 None:intergenic
GTACATTACAAGGGACGGCA+AGG 0.629460 3_1:+86811772 Msa0383790:CDS
ATTACAATGTGGCCGATGAG+CGG 0.631315 3_1:+86814234 Msa0383790:CDS
TGCCCATCTAGTGCCAGCAG+TGG 0.632198 3_1:-86814860 None:intergenic
GCGGCGCGTTATCAGTGAGA+CGG 0.633560 3_1:-86810654 None:intergenic
TGTTGTTGCAGATATGTGCA+TGG 0.634497 3_1:+86813121 Msa0383790:intron
GAAGACAAGCGTGTAAGCAA+GGG 0.638778 3_1:-86813531 None:intergenic
TTGCAGCAGTTGCAGTAATG+CGG 0.640610 3_1:-86815073 None:intergenic
CTAGTGAAGGTATTCATCGA+AGG 0.644295 3_1:+86815036 Msa0383790:CDS
TGGGCAATTGTTATGTCCCG+TGG 0.648130 3_1:+86814877 Msa0383790:CDS
TACTAGGAAAATCAGACGTG+CGG 0.651938 3_1:-86815166 None:intergenic
TGGTTTATTTATTAGCAGTG+TGG 0.653080 3_1:+86814289 Msa0383790:CDS
AGGCATCGTAAAGATAGCGT+TGG 0.654933 3_1:-86810605 None:intergenic
AAACACCGTACATACCTCAA+CGG 0.667251 3_1:-86811281 None:intergenic
TGTCAGGTTGGACAAAAGAG+AGG 0.668670 3_1:+86814014 Msa0383790:intron
ATGGATGAGTACGATAGTGG+TGG 0.670453 3_1:+86810883 Msa0383790:CDS
CAGAACCAGCTCCTACGCGT+CGG 0.671406 3_1:-86811255 None:intergenic
GCTCTGTAAATCCAGCACCA+CGG 0.673158 3_1:-86814894 None:intergenic
CATTAGGCCCCTAAATACCG+AGG 0.680909 3_1:+86813882 Msa0383790:CDS
TCAGTGAGACGGTTTATGCG+AGG 0.681265 3_1:-86810643 None:intergenic
CTACAAGAAATTTATCATGG+AGG 0.683620 3_1:-86815433 None:intergenic
ATTAGGCCCCTAAATACCGA+GGG 0.697940 3_1:+86813883 Msa0383790:CDS
AGTGTTTAGAGATCTGTGAT+GGG 0.703597 3_1:-86810457 None:intergenic
TGGGTCAGCCAGCAACACAG+TGG 0.714696 3_1:+86814090 Msa0383790:CDS
GCGTAGGTATCATTACAATG+TGG 0.721199 3_1:+86814223 Msa0383790:intron
GTTCCACGAGTACATTACAA+GGG 0.736863 3_1:+86811763 Msa0383790:CDS
CTTGATTTAAAGCTACTCCG+AGG 0.740070 3_1:+86815778 Msa0383790:three_prime_UTR
CCGATTCCTTCTGGTCTGTG+CGG 0.742167 3_1:-86810713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTTTAATTTTGTAA+GGG + chr3_1:86811356-86811375 Msa0383790:intron 10.0%
!! AAAAAACTTTATAAAATGTA+AGG + chr3_1:86811406-86811425 Msa0383790:intron 10.0%
!! AAAAACTTTATAAAATGTAA+GGG + chr3_1:86811407-86811426 Msa0383790:intron 10.0%
!!! TAAGTTTTTTAATAAAGTAA+TGG + chr3_1:86811822-86811841 Msa0383790:intron 10.0%
!!! AAGTTTTTTAATAAAGTAAT+GGG + chr3_1:86811823-86811842 Msa0383790:intron 10.0%
!! ATAATAAATATAATATAACC+AGG - chr3_1:86812141-86812160 None:intergenic 10.0%
!! TTATTTATGCAAAAATAAAT+CGG + chr3_1:86812352-86812371 Msa0383790:intron 10.0%
!!! CTGAATTTTTTAATTTTGTA+AGG + chr3_1:86811355-86811374 Msa0383790:intron 15.0%
!!! TTGTTACATAATATTTTAGT+TGG + chr3_1:86811379-86811398 Msa0383790:intron 15.0%
!!! AGTTTTTTAATAAAGTAATG+GGG + chr3_1:86811824-86811843 Msa0383790:intron 15.0%
!! ATCTATTATATTACTAACAT+TGG - chr3_1:86813015-86813034 None:intergenic 15.0%
!!! TACATACATTGATTTAAATA+AGG - chr3_1:86813402-86813421 None:intergenic 15.0%
!! TATTTAAATCAATGTATGTA+TGG + chr3_1:86813402-86813421 Msa0383790:intron 15.0%
!!! TAATTATTTTTGTTTGATGA+TGG + chr3_1:86815666-86815685 Msa0383790:three_prime_UTR 15.0%
!! TTTGAAAATAATACAGTATA+TGG - chr3_1:86815931-86815950 None:intergenic 15.0%
!! CAATGTATAATGAGATATTA+GGG - chr3_1:86810505-86810524 None:intergenic 20.0%
!! ACAATGTATAATGAGATATT+AGG - chr3_1:86810506-86810525 None:intergenic 20.0%
!! TTCCTATCTAATCTATATAA+TGG - chr3_1:86811199-86811218 None:intergenic 20.0%
!! TGATTAAATAACATTGTTGT+GGG + chr3_1:86811475-86811494 Msa0383790:intron 20.0%
!!! GTTTTTTAATAAAGTAATGG+GGG + chr3_1:86811825-86811844 Msa0383790:intron 20.0%
!!! CATATTTTTTGTAAATGTCT+TGG + chr3_1:86811988-86812007 Msa0383790:intron 20.0%
!!! TTTTACTAAATTAAGTGTTG+TGG + chr3_1:86812445-86812464 Msa0383790:intron 20.0%
!! ATTTAATTGAGATACAGTAA+TGG - chr3_1:86812719-86812738 None:intergenic 20.0%
!! AAGAACAAAAACAAATTTGA+GGG - chr3_1:86812922-86812941 None:intergenic 20.0%
!!! TTATGAAATTGTTTGTTACA+GGG + chr3_1:86813676-86813695 Msa0383790:intron 20.0%
!!! GATATGTATTTTGCATAATT+TGG - chr3_1:86813829-86813848 None:intergenic 20.0%
!! TACATGTGTTATATCATTTA+AGG + chr3_1:86813937-86813956 Msa0383790:intron 20.0%
!! AAATATAGAAAGTCAAAACT+GGG - chr3_1:86814201-86814220 None:intergenic 20.0%
!! AAAATATAGAAAGTCAAAAC+TGG - chr3_1:86814202-86814221 None:intergenic 20.0%
!!! AGTTTTGACTTTCTATATTT+TGG + chr3_1:86814201-86814220 Msa0383790:intron 20.0%
!! TCTTGATGCATTATATATTT+AGG + chr3_1:86814639-86814658 Msa0383790:intron 20.0%
!!! TATTTGATATATTTTTCTGC+AGG + chr3_1:86815259-86815278 Msa0383790:intron 20.0%
!! ATTCTACAAGAAATTTATCA+TGG - chr3_1:86815439-86815458 None:intergenic 20.0%
!! AACAGTAATTATTATGTTGA+AGG + chr3_1:86815641-86815660 Msa0383790:three_prime_UTR 20.0%
!! GATAATTTTTGTCATGTGTT+AGG + chr3_1:86811121-86811140 Msa0383790:intron 25.0%
! TCTTAATTACAGATTCAAGT+TGG + chr3_1:86811166-86811185 Msa0383790:intron 25.0%
! CTCCATTATATAGATTAGAT+AGG + chr3_1:86811194-86811213 Msa0383790:CDS 25.0%
! GTGATTAAATAACATTGTTG+TGG + chr3_1:86811474-86811493 Msa0383790:intron 25.0%
! TTTACTAACAGATTGTCTAT+GGG + chr3_1:86812177-86812196 Msa0383790:intron 25.0%
! TTATGCAAAAATAAATCGGT+TGG + chr3_1:86812356-86812375 Msa0383790:intron 25.0%
! TATGCAAAAATAAATCGGTT+GGG + chr3_1:86812357-86812376 Msa0383790:intron 25.0%
! TATCATTCTGTGATTATGAT+AGG + chr3_1:86812744-86812763 Msa0383790:intron 25.0%
! ATCATTCTGTGATTATGATA+GGG + chr3_1:86812745-86812764 Msa0383790:intron 25.0%
! GAAGAACAAAAACAAATTTG+AGG - chr3_1:86812923-86812942 None:intergenic 25.0%
! GATTCTGTATATCATATTCT+TGG + chr3_1:86813434-86813453 Msa0383790:intron 25.0%
!! CTTATGAAATTGTTTGTTAC+AGG + chr3_1:86813675-86813694 Msa0383790:intron 25.0%
!! AAATACATATCCCTTTTTGA+TGG + chr3_1:86813838-86813857 Msa0383790:CDS 25.0%
!! ATTTCCTTTTACAATGTGTT+GGG - chr3_1:86814264-86814283 None:intergenic 25.0%
! ATTGTAAAAGGAAATGAAGA+TGG + chr3_1:86814269-86814288 Msa0383790:CDS 25.0%
! GATGCATTATATATTTAGGA+TGG + chr3_1:86814643-86814662 Msa0383790:intron 25.0%
!! TTTTTGTTGATCCACTTAAA+TGG - chr3_1:86814808-86814827 None:intergenic 25.0%
! TTAAGTGGATCAACAAAAAA+TGG + chr3_1:86814809-86814828 Msa0383790:CDS 25.0%
! ACAATGAATACATGAAAATC+AGG - chr3_1:86815216-86815235 None:intergenic 25.0%
!! ATATTTTTCTGCAGGAAAAA+TGG + chr3_1:86815267-86815286 Msa0383790:intron 25.0%
!! TATTTTTCTGCAGGAAAAAT+GGG + chr3_1:86815268-86815287 Msa0383790:intron 25.0%
! TATATCGCATCTATTAGTTA+TGG + chr3_1:86815302-86815321 Msa0383790:CDS 25.0%
! ATATCGCATCTATTAGTTAT+GGG + chr3_1:86815303-86815322 Msa0383790:CDS 25.0%
!! TTAGATCTTTTGTGTCAATT+GGG + chr3_1:86815584-86815603 Msa0383790:three_prime_UTR 25.0%
!! GAAGTATCGTATATAAGAGA+GGG - chr3_1:86810536-86810555 None:intergenic 30.0%
!! TGAAGTATCGTATATAAGAG+AGG - chr3_1:86810537-86810556 None:intergenic 30.0%
ACTTCACTTATCAATGACTT+TGG + chr3_1:86810551-86810570 Msa0383790:five_prime_UTR 30.0%
! CACAATGTTTTCGATTTTCT+CGG - chr3_1:86810770-86810789 None:intergenic 30.0%
!! TAATTACAGATTCAAGTTGG+TGG + chr3_1:86811169-86811188 Msa0383790:intron 30.0%
TATAGATTAGATAGGAAGCT+TGG + chr3_1:86811202-86811221 Msa0383790:CDS 30.0%
ATAGATTAGATAGGAAGCTT+GGG + chr3_1:86811203-86811222 Msa0383790:CDS 30.0%
AAAAAATTCAGACACCCAAA+TGG - chr3_1:86811346-86811365 None:intergenic 30.0%
GGAAAAAATTTGTACACCAA+AGG + chr3_1:86811496-86811515 Msa0383790:intron 30.0%
TTAATGCTACCTGCAATTAT+TGG - chr3_1:86811558-86811577 None:intergenic 30.0%
CTCTATTGAAACAGAAAAGA+GGG - chr3_1:86811654-86811673 None:intergenic 30.0%
ACTCTATTGAAACAGAAAAG+AGG - chr3_1:86811655-86811674 None:intergenic 30.0%
! TCTTTTCTGTTTCAATAGAG+TGG + chr3_1:86811654-86811673 Msa0383790:intron 30.0%
!!! CTCACTTTTTATAGCACATT+AGG + chr3_1:86811727-86811746 Msa0383790:intron 30.0%
! ACTTTTTATAGCACATTAGG+TGG + chr3_1:86811730-86811749 Msa0383790:intron 30.0%
TGTAACATAATGTTACACAC+AGG + chr3_1:86811871-86811890 Msa0383790:intron 30.0%
!!! GTCTAACCTTAGTTCTTTTT+TGG + chr3_1:86812023-86812042 Msa0383790:intron 30.0%
CTAGATCCAAAAAAGAACTA+AGG - chr3_1:86812032-86812051 None:intergenic 30.0%
!!! CTTAGTTCTTTTTTGGATCT+AGG + chr3_1:86812030-86812049 Msa0383790:intron 30.0%
CTTTACTAACAGATTGTCTA+TGG + chr3_1:86812176-86812195 Msa0383790:intron 30.0%
TTACTAACAGATTGTCTATG+GGG + chr3_1:86812178-86812197 Msa0383790:intron 30.0%
AACACCCAAATGATAACATA+AGG - chr3_1:86812225-86812244 None:intergenic 30.0%
!!! AGTTTTTTTTTTTTACCCCG+AGG + chr3_1:86812318-86812337 Msa0383790:intron 30.0%
AAATAAATGTTGCTCAACCT+CGG - chr3_1:86812338-86812357 None:intergenic 30.0%
! AAATTCTTCTGATTTAGCTC+TGG + chr3_1:86812395-86812414 Msa0383790:intron 30.0%
! TACTAAATTAAGTGTTGTGG+AGG + chr3_1:86812448-86812467 Msa0383790:intron 30.0%
! AGGTTTCTTTTTATCCAGTA+GGG + chr3_1:86812498-86812517 Msa0383790:intron 30.0%
ATTTACTAATTGACCATTGC+AGG - chr3_1:86812951-86812970 None:intergenic 30.0%
TTACTAACATTGGTATTGCA+TGG - chr3_1:86813005-86813024 None:intergenic 30.0%
!! AAACAACTTTTTCTCATCAG+GGG - chr3_1:86813188-86813207 None:intergenic 30.0%
!! GAAACAACTTTTTCTCATCA+GGG - chr3_1:86813189-86813208 None:intergenic 30.0%
!! AGAAACAACTTTTTCTCATC+AGG - chr3_1:86813190-86813209 None:intergenic 30.0%
! TGATGAGAAAAAGTTGTTTC+TGG + chr3_1:86813189-86813208 Msa0383790:CDS 30.0%
!! TTGACAATGAAAGCATCAAA+GGG - chr3_1:86813250-86813269 None:intergenic 30.0%
!! ATTGACAATGAAAGCATCAA+AGG - chr3_1:86813251-86813270 None:intergenic 30.0%
GTTGATCATAATCAACATGA+AGG - chr3_1:86813336-86813355 None:intergenic 30.0%
GAACAAACCTAAATACATCT+GGG - chr3_1:86813360-86813379 None:intergenic 30.0%
AGAACAAACCTAAATACATC+TGG - chr3_1:86813361-86813380 None:intergenic 30.0%
TGTATATCATATTCTTGGCA+GGG + chr3_1:86813439-86813458 Msa0383790:intron 30.0%
TTGTTACAGGGAGAAAATAA+AGG + chr3_1:86813688-86813707 Msa0383790:intron 30.0%
ACCTACAATTCCATCAAAAA+GGG - chr3_1:86813851-86813870 None:intergenic 30.0%
!! ATAAAAGGGCTTTAAGAGTA+TGG - chr3_1:86813971-86813990 None:intergenic 30.0%
! ATACTCTTAAAGCCCTTTTA+TGG + chr3_1:86813970-86813989 Msa0383790:intron 30.0%
! TACTCTTAAAGCCCTTTTAT+GGG + chr3_1:86813971-86813990 Msa0383790:intron 30.0%
! CATTTCCTTTTACAATGTGT+TGG - chr3_1:86814265-86814284 None:intergenic 30.0%
TGGTTTATTTATTAGCAGTG+TGG + chr3_1:86814289-86814308 Msa0383790:CDS 30.0%
AAATCATGAATCTGTTTCAC+AGG + chr3_1:86814513-86814532 Msa0383790:intron 30.0%
! TTTTGACATTACAACCAATG+AGG - chr3_1:86814605-86814624 None:intergenic 30.0%
! TCATTGGTTGTAATGTCAAA+AGG + chr3_1:86814604-86814623 Msa0383790:CDS 30.0%
AGATTTAAACACAACACTAC+TGG - chr3_1:86814704-86814723 None:intergenic 30.0%
ATAGGATTGTTGCATGTATT+GGG - chr3_1:86814767-86814786 None:intergenic 30.0%
TATAGGATTGTTGCATGTAT+TGG - chr3_1:86814768-86814787 None:intergenic 30.0%
AAAATAAAAGCAGCTTGATC+AGG - chr3_1:86815101-86815120 None:intergenic 30.0%
! TTTTCCTAGTACTCATGTTA+AGG + chr3_1:86815178-86815197 Msa0383790:CDS 30.0%
TTTACCTTAACATGAGTACT+AGG - chr3_1:86815185-86815204 None:intergenic 30.0%
AACTAATAGATGCGATATAG+AGG - chr3_1:86815301-86815320 None:intergenic 30.0%
CTACAAGAAATTTATCATGG+AGG - chr3_1:86815436-86815455 None:intergenic 30.0%
ATGATGACAACCATAAAGAA+AGG - chr3_1:86815495-86815514 None:intergenic 30.0%
! CTTAGATCTTTTGTGTCAAT+TGG + chr3_1:86815583-86815602 Msa0383790:three_prime_UTR 30.0%
! ATGCAACTAAAATTTTCCAG+CGG + chr3_1:86815701-86815720 Msa0383790:three_prime_UTR 30.0%
!! TAGCTTTAAATCAAGAGGTA+AGG - chr3_1:86815773-86815792 None:intergenic 30.0%
! TAAACAACTTTTTGTCACCA+AGG - chr3_1:86815825-86815844 None:intergenic 30.0%
TTGTAATAGCGTAATCATTG+TGG + chr3_1:86815858-86815877 Msa0383790:three_prime_UTR 30.0%
AGTGTTTAGAGATCTGTGAT+GGG - chr3_1:86810460-86810479 None:intergenic 35.0%
AAGTGTTTAGAGATCTGTGA+TGG - chr3_1:86810461-86810480 None:intergenic 35.0%
TATTAGGGTTTGTGATGAGA+GGG - chr3_1:86810490-86810509 None:intergenic 35.0%
ATATTAGGGTTTGTGATGAG+AGG - chr3_1:86810491-86810510 None:intergenic 35.0%
AGTAGAGAGATTGAAAGAAG+AGG + chr3_1:86810810-86810829 Msa0383790:CDS 35.0%
CTTCACTATGAACATTTCTG+AGG - chr3_1:86810985-86811004 None:intergenic 35.0%
! ATTGATACATGCTGCCATTT+GGG + chr3_1:86811329-86811348 Msa0383790:intron 35.0%
ATAAAAGTCGTAGATGCCTT+TGG - chr3_1:86811515-86811534 None:intergenic 35.0%
GATATTGCTCCAATAATTGC+AGG + chr3_1:86811546-86811565 Msa0383790:intron 35.0%
TTTGAGCATAGAAACAGCAA+AGG + chr3_1:86811580-86811599 Msa0383790:CDS 35.0%
TTGAGCATAGAAACAGCAAA+GGG + chr3_1:86811581-86811600 Msa0383790:CDS 35.0%
TGTGCTATAAAAAGTGAGCA+TGG - chr3_1:86811725-86811744 None:intergenic 35.0%
ATAATGTTACACACAGGTCA+TGG + chr3_1:86811877-86811896 Msa0383790:intron 35.0%
! ATCTAGGATGTCTACTGAAA+TGG + chr3_1:86812046-86812065 Msa0383790:intron 35.0%
TTAGAGAAGATGCATTGTAG+AGG + chr3_1:86812101-86812120 Msa0383790:CDS 35.0%
TAGAGAAGATGCATTGTAGA+GGG + chr3_1:86812102-86812121 Msa0383790:CDS 35.0%
TCTCGCCTTATGTTATCATT+TGG + chr3_1:86812217-86812236 Msa0383790:intron 35.0%
CTCGCCTTATGTTATCATTT+GGG + chr3_1:86812218-86812237 Msa0383790:intron 35.0%
!!! TGTTCCGTTTTTTTACCTCA+TGG + chr3_1:86812241-86812260 Msa0383790:intron 35.0%
!!! GTTCCGTTTTTTTACCTCAT+GGG + chr3_1:86812242-86812261 Msa0383790:intron 35.0%
!!! TTCCGTTTTTTTACCTCATG+GGG + chr3_1:86812243-86812262 Msa0383790:intron 35.0%
TTCCCCATGAGGTAAAAAAA+CGG - chr3_1:86812248-86812267 None:intergenic 35.0%
AATAAATGTTGCTCAACCTC+GGG - chr3_1:86812337-86812356 None:intergenic 35.0%
! GAGGTTTCTTTTTATCCAGT+AGG + chr3_1:86812497-86812516 Msa0383790:intron 35.0%
GAACTAATGAGAAAACTGCA+GGG - chr3_1:86812580-86812599 None:intergenic 35.0%
TGAACTAATGAGAAAACTGC+AGG - chr3_1:86812581-86812600 None:intergenic 35.0%
! TGCAGTTTTCTCATTAGTTC+AGG + chr3_1:86812580-86812599 Msa0383790:intron 35.0%
TGTGATTATGATAGGGACTT+GGG + chr3_1:86812752-86812771 Msa0383790:intron 35.0%
AAGTCCCAAATCAAGTAGTA+TGG + chr3_1:86812790-86812809 Msa0383790:intron 35.0%
!!! GGGTGAGTATTTTAGTAGAT+TGG + chr3_1:86812819-86812838 Msa0383790:intron 35.0%
ATCCTAAAAGCTAGCTATCA+AGG - chr3_1:86812853-86812872 None:intergenic 35.0%
CAAAAACAAATTTGAGGGCA+TGG - chr3_1:86812917-86812936 None:intergenic 35.0%
!! AAGTTGTTTCTGGTTGATCT+TGG + chr3_1:86813199-86813218 Msa0383790:CDS 35.0%
!! TTTCTGGTTGATCTTGGATT+AGG + chr3_1:86813205-86813224 Msa0383790:CDS 35.0%
CTGTATATCATATTCTTGGC+AGG + chr3_1:86813438-86813457 Msa0383790:intron 35.0%
GTATATCATATTCTTGGCAG+GGG + chr3_1:86813440-86813459 Msa0383790:intron 35.0%
TCTTGTCTGCAAGAAAAAGA+TGG + chr3_1:86813714-86813733 Msa0383790:CDS 35.0%
ACAAAAGCAACACAAAGCTT+CGG - chr3_1:86813749-86813768 None:intergenic 35.0%
CTACATATTCTACAAACTGC+CGG - chr3_1:86813783-86813802 None:intergenic 35.0%
! TCCCTTTTTGATGGAATTGT+AGG + chr3_1:86813847-86813866 Msa0383790:CDS 35.0%
GACCTACAATTCCATCAAAA+AGG - chr3_1:86813852-86813871 None:intergenic 35.0%
CACAACACAAACCCATAAAA+GGG - chr3_1:86813985-86814004 None:intergenic 35.0%
TCACAACACAAACCCATAAA+AGG - chr3_1:86813986-86814005 None:intergenic 35.0%
TGTTGTGAAGCTTATATGTC+AGG + chr3_1:86813998-86814017 Msa0383790:intron 35.0%
TGATGAACAACCAAAGAAGA+AGG + chr3_1:86814061-86814080 Msa0383790:CDS 35.0%
! GCTCAAAACCTTTGTTTCAT+TGG - chr3_1:86814140-86814159 None:intergenic 35.0%
!!! GACTTTCTATATTTTGGCGT+AGG + chr3_1:86814207-86814226 Msa0383790:intron 35.0%
CTTTCCCAACACATTGTAAA+AGG + chr3_1:86814257-86814276 Msa0383790:CDS 35.0%
ATGAATCTGTTTCACAGGAA+TGG + chr3_1:86814518-86814537 Msa0383790:intron 35.0%
!! TGTTTCACAGGAATGGATTA+TGG + chr3_1:86814525-86814544 Msa0383790:intron 35.0%
!! AAACGAGTCACTGACTTTAT+AGG - chr3_1:86814785-86814804 None:intergenic 35.0%
AGTGGATCAACAAAAAATGG+AGG + chr3_1:86814812-86814831 Msa0383790:CDS 35.0%
GTGGATCAACAAAAAATGGA+GGG + chr3_1:86814813-86814832 Msa0383790:CDS 35.0%
ATCAACAAAAAATGGAGGGA+AGG + chr3_1:86814817-86814836 Msa0383790:CDS 35.0%
!!! AGGATTTTTTGTCACTGCTA+TGG + chr3_1:86814837-86814856 Msa0383790:CDS 35.0%
TTCGATGAATACCTTCACTA+GGG - chr3_1:86815037-86815056 None:intergenic 35.0%
TGGGAGAACAGTTTCATAAA+TGG + chr3_1:86815322-86815341 Msa0383790:exon 35.0%
GTATGCTACACCTTTCTTTA+TGG + chr3_1:86815482-86815501 Msa0383790:three_prime_UTR 35.0%
! TGCAACTAAAATTTTCCAGC+GGG + chr3_1:86815702-86815721 Msa0383790:three_prime_UTR 35.0%
ATTACGCTATTACAAACTGC+TGG - chr3_1:86815853-86815872 None:intergenic 35.0%
! TTTAGAGATCTGTGATGGGA+GGG - chr3_1:86810456-86810475 None:intergenic 40.0%
!! CAATGACTTTGGAACTTTCG+CGG + chr3_1:86810562-86810581 Msa0383790:five_prime_UTR 40.0%
GAGAGATTGAAAGAAGAGGA+AGG + chr3_1:86810814-86810833 Msa0383790:CDS 40.0%
AGGAAGGAGAGAATAAGAAG+AGG + chr3_1:86810830-86810849 Msa0383790:CDS 40.0%
GGAAGGAGAGAATAAGAAGA+GGG + chr3_1:86810831-86810850 Msa0383790:CDS 40.0%
AGTTGTACTCCCTTCTTCTT+CGG - chr3_1:86810935-86810954 None:intergenic 40.0%
AAAATCACCTTCTCAGGAAG+TGG - chr3_1:86810958-86810977 None:intergenic 40.0%
GGAATCAAAATCACCTTCTC+AGG - chr3_1:86810964-86810983 None:intergenic 40.0%
TCTAGTTGAGTCAGACGTTA+TGG + chr3_1:86811073-86811092 Msa0383790:intron 40.0%
ATTAGATAGGAAGCTTGGGA+AGG + chr3_1:86811207-86811226 Msa0383790:CDS 40.0%
TTAGATAGGAAGCTTGGGAA+GGG + chr3_1:86811208-86811227 Msa0383790:CDS 40.0%
AAACACCGTACATACCTCAA+CGG - chr3_1:86811284-86811303 None:intergenic 40.0%
ATGGCAGCATGTATCAATCA+CGG - chr3_1:86811327-86811346 None:intergenic 40.0%
GATTGATACATGCTGCCATT+TGG + chr3_1:86811328-86811347 Msa0383790:intron 40.0%
GTTGCTTCGGCACAAAATAA+CGG - chr3_1:86811441-86811460 None:intergenic 40.0%
!! GTTATTTTGTGCCGAAGCAA+CGG + chr3_1:86811440-86811459 Msa0383790:intron 40.0%
!! TTATTTTGTGCCGAAGCAAC+GGG + chr3_1:86811441-86811460 Msa0383790:intron 40.0%
CATATCTATTCCCGTTGCTT+CGG - chr3_1:86811454-86811473 None:intergenic 40.0%
! AACAGCAAAGGGTGCAATTA+CGG + chr3_1:86811592-86811611 Msa0383790:CDS 40.0%
TTGTAAACCTGCCATTCATG+TGG - chr3_1:86811622-86811641 None:intergenic 40.0%
TGTTCCACGAGTACATTACA+AGG + chr3_1:86811762-86811781 Msa0383790:CDS 40.0%
GTTCCACGAGTACATTACAA+GGG + chr3_1:86811763-86811782 Msa0383790:CDS 40.0%
GCAAGGTGACTACTACATTA+TGG + chr3_1:86811789-86811808 Msa0383790:CDS 40.0%
!! ATATGCTTGGCTCTAGTCTA+TGG + chr3_1:86811900-86811919 Msa0383790:CDS 40.0%
!! TATGCTTGGCTCTAGTCTAT+GGG + chr3_1:86811901-86811920 Msa0383790:CDS 40.0%
TAGGATGTCTACTGAAATGG+TGG + chr3_1:86812049-86812068 Msa0383790:intron 40.0%
ATAAATGTTGCTCAACCTCG+GGG - chr3_1:86812336-86812355 None:intergenic 40.0%
! AATTAAGTGTTGTGGAGGAG+AGG + chr3_1:86812453-86812472 Msa0383790:intron 40.0%
! AGAGGTTTCTTGTTATCCAG+AGG + chr3_1:86812471-86812490 Msa0383790:intron 40.0%
! GAGGTTTCTTGTTATCCAGA+GGG + chr3_1:86812472-86812491 Msa0383790:intron 40.0%
! AGGTTTCTTGTTATCCAGAG+GGG + chr3_1:86812473-86812492 Msa0383790:intron 40.0%
! TCTTTTTATCCAGTAGGGTG+AGG + chr3_1:86812503-86812522 Msa0383790:intron 40.0%
! ACTTTTCATGAGCACATCTC+AGG - chr3_1:86812668-86812687 None:intergenic 40.0%
CTGTGATTATGATAGGGACT+TGG + chr3_1:86812751-86812770 Msa0383790:intron 40.0%
TGATAGGGACTTGGGTATTA+TGG + chr3_1:86812760-86812779 Msa0383790:intron 40.0%
GATAGGGACTTGGGTATTAT+GGG + chr3_1:86812761-86812780 Msa0383790:intron 40.0%
CACGCCATACTACTTGATTT+GGG - chr3_1:86812797-86812816 None:intergenic 40.0%
ACACGCCATACTACTTGATT+TGG - chr3_1:86812798-86812817 None:intergenic 40.0%
AATCAAGTAGTATGGCGTGT+TGG + chr3_1:86812798-86812817 Msa0383790:intron 40.0%
ATCAAGTAGTATGGCGTGTT+GGG + chr3_1:86812799-86812818 Msa0383790:intron 40.0%
CTAAAAGCTAGCTATCAAGG+AGG - chr3_1:86812850-86812869 None:intergenic 40.0%
!!! CTCCTTGATAGCTAGCTTTT+AGG + chr3_1:86812848-86812867 Msa0383790:intron 40.0%
ATATCTGCAACAACAACAGC+AGG - chr3_1:86813116-86813135 None:intergenic 40.0%
TGTTGTTGCAGATATGTGCA+TGG + chr3_1:86813121-86813140 Msa0383790:intron 40.0%
AAGCCTGAAAACTTCTTGCT+TGG + chr3_1:86813151-86813170 Msa0383790:CDS 40.0%
!! GAAAGCATCAAAGGGTAACA+TGG - chr3_1:86813242-86813261 None:intergenic 40.0%
! TTTTCTACACAGCAACTCGT+TGG + chr3_1:86813293-86813312 Msa0383790:CDS 40.0%
ATCAACGCCCAGATGTATTT+AGG + chr3_1:86813350-86813369 Msa0383790:CDS 40.0%
ATCTTGGTAGAACAAGTAGC+AGG + chr3_1:86813492-86813511 Msa0383790:CDS 40.0%
ATAACCTGATATCCTTGCCA+AGG - chr3_1:86813575-86813594 None:intergenic 40.0%
CAAAAGCAACACAAAGCTTC+GGG - chr3_1:86813748-86813767 None:intergenic 40.0%
TATTCTACAAACTGCCGGAA+AGG - chr3_1:86813778-86813797 None:intergenic 40.0%
TAGGTCCAAATCCTGACATT+AGG + chr3_1:86813866-86813885 Msa0383790:CDS 40.0%
GTGAAGCTTATATGTCAGGT+TGG + chr3_1:86814002-86814021 Msa0383790:intron 40.0%
TTCATCATCATCCTCTTCCA+TGG - chr3_1:86814048-86814067 None:intergenic 40.0%
CTCGTAGACCAATGAAACAA+AGG + chr3_1:86814129-86814148 Msa0383790:CDS 40.0%
GCGTAGGTATCATTACAATG+TGG + chr3_1:86814223-86814242 Msa0383790:intron 40.0%
TAGTCTTTGGGCACTCATTA+TGG + chr3_1:86814322-86814341 Msa0383790:CDS 40.0%
! CTCTTCCAGTTTTCTTCACA+AGG + chr3_1:86814382-86814401 Msa0383790:CDS 40.0%
! TCCAGTTTTCTTCACAAGGT+TGG + chr3_1:86814386-86814405 Msa0383790:intron 40.0%
ACCAACCTTGTGAAGAAAAC+TGG - chr3_1:86814390-86814409 None:intergenic 40.0%
!! AGGAATGGATTATGGAACAG+TGG + chr3_1:86814533-86814552 Msa0383790:intron 40.0%
!! GGAATGGATTATGGAACAGT+GGG + chr3_1:86814534-86814553 Msa0383790:intron 40.0%
TATTACATCAGTGCCATAGC+TGG + chr3_1:86814565-86814584 Msa0383790:CDS 40.0%
GTGACTCGTTTCCATTTAAG+TGG + chr3_1:86814794-86814813 Msa0383790:CDS 40.0%
TTCTCTCTAAACTCGATGCT+AGG + chr3_1:86814989-86815008 Msa0383790:intron 40.0%
CTTCGATGAATACCTTCACT+AGG - chr3_1:86815038-86815057 None:intergenic 40.0%
!! CTAGTGAAGGTATTCATCGA+AGG + chr3_1:86815036-86815055 Msa0383790:CDS 40.0%
!! TGAAGGTATTCATCGAAGGT+GGG + chr3_1:86815040-86815059 Msa0383790:CDS 40.0%
! CATCAGGTGGTTTTCTTCTT+GGG - chr3_1:86815130-86815149 None:intergenic 40.0%
! TCATCAGGTGGTTTTCTTCT+TGG - chr3_1:86815131-86815150 None:intergenic 40.0%
GTTTCTTGAGTTTCATCAGG+TGG - chr3_1:86815143-86815162 None:intergenic 40.0%
AGCGTTTCTTGAGTTTCATC+AGG - chr3_1:86815146-86815165 None:intergenic 40.0%
TACTAGGAAAATCAGACGTG+CGG - chr3_1:86815169-86815188 None:intergenic 40.0%
TGTAGAATGCAGTTCAGCAT+TGG + chr3_1:86815451-86815470 Msa0383790:three_prime_UTR 40.0%
! TAAAATTTTCCAGCGGGAAC+TGG + chr3_1:86815708-86815727 Msa0383790:three_prime_UTR 40.0%
! AAAATTTTCCAGCGGGAACT+GGG + chr3_1:86815709-86815728 Msa0383790:three_prime_UTR 40.0%
AAAAGAGCCAAGTACAAGGT+AGG - chr3_1:86815748-86815767 None:intergenic 40.0%
GGATAAAAGAGCCAAGTACA+AGG - chr3_1:86815752-86815771 None:intergenic 40.0%
!! CGGAGTAGCTTTAAATCAAG+AGG - chr3_1:86815778-86815797 None:intergenic 40.0%
! CTTGATTTAAAGCTACTCCG+AGG + chr3_1:86815778-86815797 Msa0383790:three_prime_UTR 40.0%
AAGGCCAAATTCAGACATTG+AGG - chr3_1:86815806-86815825 None:intergenic 40.0%
TCAATGTCTGAATTTGGCCT+TGG + chr3_1:86815805-86815824 Msa0383790:three_prime_UTR 40.0%
! GTTTAGAGATCTGTGATGGG+AGG - chr3_1:86810457-86810476 None:intergenic 45.0%
GGTTTGTGATGAGAGGGAAA+TGG - chr3_1:86810484-86810503 None:intergenic 45.0%
! AGGCATCGTAAAGATAGCGT+TGG - chr3_1:86810608-86810627 None:intergenic 45.0%
GTGAATAACGACGACGAAAC+AGG + chr3_1:86810787-86810806 Msa0383790:CDS 45.0%
AGAGAATAAGAAGAGGGCAG+TGG + chr3_1:86810837-86810856 Msa0383790:CDS 45.0%
ATAAGAAGAGGGCAGTGGTT+AGG + chr3_1:86810842-86810861 Msa0383790:CDS 45.0%
TAAGAAGAGGGCAGTGGTTA+GGG + chr3_1:86810843-86810862 Msa0383790:CDS 45.0%
! AGTGGTTAGGGTTTCTAGAG+AGG + chr3_1:86810855-86810874 Msa0383790:CDS 45.0%
! GGTTTCTAGAGAGGAAGCTA+TGG + chr3_1:86810864-86810883 Msa0383790:CDS 45.0%
GCTATGGATGAGTACGATAG+TGG + chr3_1:86810880-86810899 Msa0383790:CDS 45.0%
! ATGGATGAGTACGATAGTGG+TGG + chr3_1:86810883-86810902 Msa0383790:CDS 45.0%
TACAACTCCACTTCCTGAGA+AGG + chr3_1:86810948-86810967 Msa0383790:CDS 45.0%
GGATTTGGGCAAGTCTATGT+TGG + chr3_1:86811232-86811251 Msa0383790:CDS 45.0%
GGTGTTTATGTCTGCCATTG+TGG + chr3_1:86811297-86811316 Msa0383790:intron 45.0%
CGAAGCAACGGGAATAGATA+TGG + chr3_1:86811452-86811471 Msa0383790:intron 45.0%
ATTACGGACCTCCACATGAA+TGG + chr3_1:86811608-86811627 Msa0383790:CDS 45.0%
TAAACCTGCCATTCATGTGG+AGG - chr3_1:86811619-86811638 None:intergenic 45.0%
AGCACATTAGGTGGTAGTCA+TGG + chr3_1:86811739-86811758 Msa0383790:intron 45.0%
CACGAGTACATTACAAGGGA+CGG + chr3_1:86811767-86811786 Msa0383790:CDS 45.0%
GGGGTTTCTATTGTCTCTGA+AGG + chr3_1:86811844-86811863 Msa0383790:intron 45.0%
ACACAGGTCATGGATATGCT+TGG + chr3_1:86811887-86811906 Msa0383790:intron 45.0%
GCTCTAGTCTATGGGATGTT+TGG + chr3_1:86811909-86811928 Msa0383790:CDS 45.0%
ATTGAACGTGTTTCCCCATG+AGG - chr3_1:86812259-86812278 None:intergenic 45.0%
AAAAAGAAACCTCACCCCTC+TGG - chr3_1:86812490-86812509 None:intergenic 45.0%
TAAGCTTGACACACTGATCC+TGG - chr3_1:86812544-86812563 None:intergenic 45.0%
GACAAGTATCTGAGCACTTG+AGG - chr3_1:86812877-86812896 None:intergenic 45.0%
TAATTGACCATTGCAGGCAG+GGG - chr3_1:86812945-86812964 None:intergenic 45.0%
CTAATTGACCATTGCAGGCA+GGG - chr3_1:86812946-86812965 None:intergenic 45.0%
ACTAATTGACCATTGCAGGC+AGG - chr3_1:86812947-86812966 None:intergenic 45.0%
! GGTCCAAGCAAGAAGTTTTC+AGG - chr3_1:86813157-86813176 None:intergenic 45.0%
AAACTTCTTGCTTGGACCCT+CGG + chr3_1:86813159-86813178 Msa0383790:CDS 45.0%
AAGTAGCAGGAGAGATGACT+TGG + chr3_1:86813505-86813524 Msa0383790:CDS 45.0%
GAAGACAAGCGTGTAAGCAA+GGG - chr3_1:86813534-86813553 None:intergenic 45.0%
TTGTCTTCCTTCTTCGTGGT+CGG + chr3_1:86813546-86813565 Msa0383790:CDS 45.0%
GTTACCTTGGCAAGGATATC+AGG + chr3_1:86813568-86813587 Msa0383790:CDS 45.0%
GTATTTAGGGGCCTAATGTC+AGG - chr3_1:86813880-86813899 None:intergenic 45.0%
ATTAGGCCCCTAAATACCGA+GGG + chr3_1:86813883-86813902 Msa0383790:CDS 45.0%
!! TGTCAGGTTGGACAAAAGAG+AGG + chr3_1:86814014-86814033 Msa0383790:intron 45.0%
AAAGAGAGGACGATTGACCA+TGG + chr3_1:86814028-86814047 Msa0383790:CDS 45.0%
ACCAAAGAAGAAGGTCCGAA+TGG + chr3_1:86814070-86814089 Msa0383790:CDS 45.0%
CCAAAGAAGAAGGTCCGAAT+GGG + chr3_1:86814071-86814090 Msa0383790:CDS 45.0%
ACACTAATCCACTGTGTTGC+TGG - chr3_1:86814101-86814120 None:intergenic 45.0%
ATTACAATGTGGCCGATGAG+CGG + chr3_1:86814234-86814253 Msa0383790:CDS 45.0%
!! TGGCTTCTTGTGCTAGTCTT+TGG + chr3_1:86814309-86814328 Msa0383790:CDS 45.0%
!! GGCTTCTTGTGCTAGTCTTT+GGG + chr3_1:86814310-86814329 Msa0383790:CDS 45.0%
TGTGATCTGCTGTTCCTTAC+AGG + chr3_1:86814739-86814758 Msa0383790:intron 45.0%
GTGATCTGCTGTTCCTTACA+GGG + chr3_1:86814740-86814759 Msa0383790:intron 45.0%
CTAAACTCGATGCTAGGTTG+TGG + chr3_1:86814995-86815014 Msa0383790:intron 45.0%
GATTTCCTGTACCCTAGTGA+AGG + chr3_1:86815023-86815042 Msa0383790:CDS 45.0%
GAATACCTTCACTAGGGTAC+AGG - chr3_1:86815031-86815050 None:intergenic 45.0%
!! GTGAAGGTATTCATCGAAGG+TGG + chr3_1:86815039-86815058 Msa0383790:CDS 45.0%
TTGCAGCAGTTGCAGTAATG+CGG - chr3_1:86815076-86815095 None:intergenic 45.0%
! GCAAGCGGGAATTTTGCAAT+AGG - chr3_1:86815385-86815404 None:intergenic 45.0%
AACTCAGATGTGTAGGCAAG+CGG - chr3_1:86815400-86815419 None:intergenic 45.0%
CTTGCCTACACATCTGAGTT+GGG + chr3_1:86815400-86815419 Msa0383790:three_prime_UTR 45.0%
AGTTCCCAACTCAGATGTGT+AGG - chr3_1:86815407-86815426 None:intergenic 45.0%
AAGTAGGCCTACCTTGTACT+TGG + chr3_1:86815738-86815757 Msa0383790:three_prime_UTR 45.0%
ATTCAGACATTGAGGAGCCT+CGG - chr3_1:86815798-86815817 None:intergenic 45.0%
GGCTCCTCAATGTCTGAATT+TGG + chr3_1:86815799-86815818 Msa0383790:three_prime_UTR 45.0%
!! TTATATTTATTATTTATACA+TGG + chr3_1:86812148-86812167 Msa0383790:intron 5.0%
!! TATATTTATTATTTATACAT+GGG + chr3_1:86812149-86812168 Msa0383790:intron 5.0%
GCGGATCTCTCTCATCTTCA+TGG + chr3_1:86810581-86810600 Msa0383790:five_prime_UTR 50.0%
TGAGACGGTTTATGCGAGGT+CGG - chr3_1:86810642-86810661 None:intergenic 50.0%
TCAGTGAGACGGTTTATGCG+AGG - chr3_1:86810646-86810665 None:intergenic 50.0%
AAGCTTGGGAAGGGAGGATT+TGG + chr3_1:86811217-86811236 Msa0383790:CDS 50.0%
AGCTTGGGAAGGGAGGATTT+GGG + chr3_1:86811218-86811237 Msa0383790:CDS 50.0%
!! TGGTGCCGTTGAGGTATGTA+CGG + chr3_1:86811276-86811295 Msa0383790:intron 50.0%
! TCAATCACGGAGCACCACAA+TGG - chr3_1:86811314-86811333 None:intergenic 50.0%
CGTCCCTTGTAATGTACTCG+TGG - chr3_1:86811769-86811788 None:intergenic 50.0%
GTACATTACAAGGGACGGCA+AGG + chr3_1:86811772-86811791 Msa0383790:CDS 50.0%
GGTGGCATGTATTGCAATCG+AGG + chr3_1:86812067-86812086 Msa0383790:CDS 50.0%
! GAGGGTGAGACTCATTTTCC+TGG + chr3_1:86812120-86812139 Msa0383790:intron 50.0%
! TCTTGTTATCCAGAGGGGTG+AGG + chr3_1:86812478-86812497 Msa0383790:intron 50.0%
TAGGGTGAGGTCCATGCTAA+GGG + chr3_1:86812516-86812535 Msa0383790:intron 50.0%
TGATCCTGGTACCCTTAGCA+TGG - chr3_1:86812530-86812549 None:intergenic 50.0%
CATTAGTTCAGGCTGAGAGC+AGG + chr3_1:86812591-86812610 Msa0383790:intron 50.0%
! AACCCAAGTTCCACTTGCTG+TGG + chr3_1:86812618-86812637 Msa0383790:intron 50.0%
!! TTCCACTTGCTGTGGCCTAT+GGG + chr3_1:86812626-86812645 Msa0383790:intron 50.0%
AACTTCTTGCTTGGACCCTC+GGG + chr3_1:86813160-86813179 Msa0383790:CDS 50.0%
CGTTGGCGTGATAGTTCAAC+TGG + chr3_1:86813310-86813329 Msa0383790:CDS 50.0%
GCTAGTGTGCATGCACATCT+TGG + chr3_1:86813476-86813495 Msa0383790:CDS 50.0%
GGAAGACAAGCGTGTAAGCA+AGG - chr3_1:86813535-86813554 None:intergenic 50.0%
ACGCTTGTCTTCCTTCTTCG+TGG + chr3_1:86813542-86813561 Msa0383790:CDS 50.0%
AAGGTAACCGACCACGAAGA+AGG - chr3_1:86813556-86813575 None:intergenic 50.0%
TTCTTCGTGGTCGGTTACCT+TGG + chr3_1:86813555-86813574 Msa0383790:CDS 50.0%
ACACAAAGCTTCGGGTGAAG+TGG - chr3_1:86813740-86813759 None:intergenic 50.0%
! GCTTTTGTCCTGCACCTTTC+CGG + chr3_1:86813761-86813780 Msa0383790:CDS 50.0%
AGGGGCCTAATGTCAGGATT+TGG - chr3_1:86813874-86813893 None:intergenic 50.0%
CATTAGGCCCCTAAATACCG+AGG + chr3_1:86813882-86813901 Msa0383790:CDS 50.0%
TGAGCACCCTCGGTATTTAG+GGG - chr3_1:86813892-86813911 None:intergenic 50.0%
CTGAGCACCCTCGGTATTTA+GGG - chr3_1:86813893-86813912 None:intergenic 50.0%
TCTGAGCACCCTCGGTATTT+AGG - chr3_1:86813894-86813913 None:intergenic 50.0%
!! AAATACCGAGGGTGCTCAGA+AGG + chr3_1:86813894-86813913 Msa0383790:CDS 50.0%
AAGTACCTTCTGAGCACCCT+CGG - chr3_1:86813902-86813921 None:intergenic 50.0%
AGGACGATTGACCATGGAAG+AGG + chr3_1:86814034-86814053 Msa0383790:CDS 50.0%
CCCATTCGGACCTTCTTCTT+TGG - chr3_1:86814074-86814093 None:intergenic 50.0%
TGGGCACTCATTATGGATGC+TGG + chr3_1:86814329-86814348 Msa0383790:CDS 50.0%
CTCATTATGGATGCTGGCAC+TGG + chr3_1:86814335-86814354 Msa0383790:CDS 50.0%
GCCATAGCTGGAGCTAGTAA+CGG + chr3_1:86814577-86814596 Msa0383790:CDS 50.0%
CCATAGCTGGAGCTAGTAAC+GGG + chr3_1:86814578-86814597 Msa0383790:CDS 50.0%
!! AGCTAGTAACGGGTCCTCAT+TGG + chr3_1:86814588-86814607 Msa0383790:CDS 50.0%
GCATGTATTGGGTCCCTGTA+AGG - chr3_1:86814756-86814775 None:intergenic 50.0%
TGGGCAATTGTTATGTCCCG+TGG + chr3_1:86814877-86814896 Msa0383790:CDS 50.0%
ATTGTTATGTCCCGTGGTGC+TGG + chr3_1:86814883-86814902 Msa0383790:CDS 50.0%
CTCTGTAAATCCAGCACCAC+GGG - chr3_1:86814896-86814915 None:intergenic 50.0%
GCTCTGTAAATCCAGCACCA+CGG - chr3_1:86814897-86814916 None:intergenic 50.0%
! TGGTGCTGGATTTACAGAGC+AGG + chr3_1:86814897-86814916 Msa0383790:CDS 50.0%
ACTCAGATGTGTAGGCAAGC+GGG - chr3_1:86815399-86815418 None:intergenic 50.0%
GCTTGCCTACACATCTGAGT+TGG + chr3_1:86815399-86815418 Msa0383790:three_prime_UTR 50.0%
! GGGAACTGGGTGCTATAAGT+AGG + chr3_1:86815722-86815741 Msa0383790:three_prime_UTR 50.0%
GAGACGGTTTATGCGAGGTC+GGG - chr3_1:86810641-86810660 None:intergenic 55.0%
ATTCCTTCTGGTCTGTGCGG+CGG - chr3_1:86810713-86810732 None:intergenic 55.0%
CCGATTCCTTCTGGTCTGTG+CGG - chr3_1:86810716-86810735 None:intergenic 55.0%
CCGCACAGACCAGAAGGAAT+CGG + chr3_1:86810713-86810732 Msa0383790:CDS 55.0%
CACAGACCAGAAGGAATCGG+AGG + chr3_1:86810716-86810735 Msa0383790:CDS 55.0%
CTTCTGCCTCCGATTCCTTC+TGG - chr3_1:86810725-86810744 None:intergenic 55.0%
! CCGGAGCTTTATCGGCACTA+CGG - chr3_1:86810909-86810928 None:intergenic 55.0%
!! CCGTAGTGCCGATAAAGCTC+CGG + chr3_1:86810906-86810925 Msa0383790:CDS 55.0%
!! CGTAGTGCCGATAAAGCTCC+GGG + chr3_1:86810907-86810926 Msa0383790:CDS 55.0%
! TTCGGCTCCCGGAGCTTTAT+CGG - chr3_1:86810917-86810936 None:intergenic 55.0%
GATAGGAAGCTTGGGAAGGG+AGG + chr3_1:86811211-86811230 Msa0383790:CDS 55.0%
! GAGTGGAGCTGCTTTGCTGA+AGG + chr3_1:86811671-86811690 Msa0383790:intron 55.0%
TAAGGCGAGACTCAAGCAGC+AGG - chr3_1:86812207-86812226 None:intergenic 55.0%
TAGCATGGACCTCACCCTAC+TGG - chr3_1:86812515-86812534 None:intergenic 55.0%
GTAGGGTGAGGTCCATGCTA+AGG + chr3_1:86812515-86812534 Msa0383790:intron 55.0%
!! AGGTCCATGCTAAGGGTACC+AGG + chr3_1:86812523-86812542 Msa0383790:intron 55.0%
GGCCACAGCAAGTGGAACTT+GGG - chr3_1:86812623-86812642 None:intergenic 55.0%
AGGCCACAGCAAGTGGAACT+TGG - chr3_1:86812624-86812643 None:intergenic 55.0%
!! GTTCCACTTGCTGTGGCCTA+TGG + chr3_1:86812625-86812644 Msa0383790:intron 55.0%
!! TCCACTTGCTGTGGCCTATG+GGG + chr3_1:86812627-86812646 Msa0383790:intron 55.0%
GCCTATGGGGTGAACCTGTT+TGG + chr3_1:86812640-86812659 Msa0383790:intron 55.0%
GCCAAACAGGTTCACCCCAT+AGG - chr3_1:86812644-86812663 None:intergenic 55.0%
GCACATCTCAGGTGCCAAAC+AGG - chr3_1:86812657-86812676 None:intergenic 55.0%
TGTTCTTCCCCTGCCTGCAA+TGG + chr3_1:86812935-86812954 Msa0383790:intron 55.0%
TTCTCATCAGGGGTTCCCGA+GGG - chr3_1:86813178-86813197 None:intergenic 55.0%
TTTCTCATCAGGGGTTCCCG+AGG - chr3_1:86813179-86813198 None:intergenic 55.0%
! ACAAACTGCCGGAAAGGTGC+AGG - chr3_1:86813772-86813791 None:intergenic 55.0%
!! GAGGGTGCTCAGAAGGTACT+TGG + chr3_1:86813901-86813920 Msa0383790:intron 55.0%
! GTGTTGCTGGCTGACCCATT+CGG - chr3_1:86814088-86814107 None:intergenic 55.0%
GTGTTGGGAAAGCCGCTCAT+CGG - chr3_1:86814249-86814268 None:intergenic 55.0%
CCCGTTACTAGCTCCAGCTA+TGG - chr3_1:86814581-86814600 None:intergenic 55.0%
TTATAGCACCCAGTTCCCGC+TGG - chr3_1:86815720-86815739 None:intergenic 55.0%
GCGGCGCGTTATCAGTGAGA+CGG - chr3_1:86810657-86810676 None:intergenic 60.0%
! TCTCACTGATAACGCGCCGC+CGG + chr3_1:86810657-86810676 Msa0383790:CDS 60.0%
CTCCGGGAGCCGAAGAAGAA+GGG + chr3_1:86810923-86810942 Msa0383790:CDS 60.0%
CTCCCTTCTTCTTCGGCTCC+CGG - chr3_1:86810928-86810947 None:intergenic 60.0%
GTCTATGTTGGCCGACGCGT+AGG + chr3_1:86811244-86811263 Msa0383790:CDS 60.0%
CAGAACCAGCTCCTACGCGT+CGG - chr3_1:86811258-86811277 None:intergenic 60.0%
!! AGCTGGTTCTGGTGCCGTTG+AGG + chr3_1:86811267-86811286 Msa0383790:CDS 60.0%
CGGACCTCCACATGAATGGC+AGG + chr3_1:86811612-86811631 Msa0383790:CDS 60.0%
ACCCCATAGGCCACAGCAAG+TGG - chr3_1:86812631-86812650 None:intergenic 60.0%
CGTGGTCGGTTACCTTGGCA+AGG + chr3_1:86813560-86813579 Msa0383790:CDS 60.0%
TGGGTCAGCCAGCAACACAG+TGG + chr3_1:86814090-86814109 Msa0383790:CDS 60.0%
GTCACTGCTATGGCCACTGC+TGG + chr3_1:86814847-86814866 Msa0383790:CDS 60.0%
TGGCCACTGCTGGCACTAGA+TGG + chr3_1:86814857-86814876 Msa0383790:CDS 60.0%
GGCCACTGCTGGCACTAGAT+GGG + chr3_1:86814858-86814877 Msa0383790:CDS 60.0%
TGCCCATCTAGTGCCAGCAG+TGG - chr3_1:86814863-86814882 None:intergenic 60.0%
CGAGGTCGGGTACGCAACTC+AGG - chr3_1:86810628-86810647 None:intergenic 65.0%
GCTCCGGGAGCCGAAGAAGA+AGG + chr3_1:86810922-86810941 Msa0383790:CDS 65.0%
! CGACGCGTAGGAGCTGGTTC+TGG + chr3_1:86811256-86811275 Msa0383790:CDS 65.0%
CCTTCTGGTCTGTGCGGCGG+TGG - chr3_1:86810710-86810729 None:intergenic 70.0%
CCACCGCCGCACAGACCAGA+AGG + chr3_1:86810707-86810726 Msa0383790:CDS 70.0%
GTTGGCCGACGCGTAGGAGC+TGG + chr3_1:86811250-86811269 Msa0383790:CDS 70.0%
GATAACGCGCCGCCGGTCGC+CGG + chr3_1:86810664-86810683 Msa0383790:CDS 75.0%
AGCGACGGCTCTCCTCCCGC+CGG - chr3_1:86810686-86810705 None:intergenic 75.0%
CTGTGCGGCGGTGGCAGCGA+CGG - chr3_1:86810701-86810720 None:intergenic 75.0%
! GCTCTCCTCCCGCCGGCGAC+CGG - chr3_1:86810679-86810698 None:intergenic 80.0%
! AACGCGCCGCCGGTCGCCGG+CGG + chr3_1:86810667-86810686 Msa0383790:CDS 85.0%
! CTCCTCCCGCCGGCGACCGG+CGG - chr3_1:86810676-86810695 None:intergenic 85.0%
! ACGCGCCGCCGGTCGCCGGC+GGG + chr3_1:86810668-86810687 Msa0383790:CDS 90.0%
! CGCCGCCGGTCGCCGGCGGG+AGG + chr3_1:86810671-86810690 Msa0383790:CDS 95.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86810373 86815970 86810373 ID=Msa0383790;Name=Msa0383790
chr3_1 mRNA 86810373 86815970 86810373 ID=Msa0383790-mRNA-1;Parent=Msa0383790;Name=Msa0383790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=249|0.92|0.86|1|1|1|15|630|707
chr3_1 exon 86810373 86810969 86810373 ID=Msa0383790-mRNA-1:exon:23005;Parent=Msa0383790-mRNA-1
chr3_1 exon 86811178 86811288 86811178 ID=Msa0383790-mRNA-1:exon:23006;Parent=Msa0383790-mRNA-1
chr3_1 exon 86811568 86811641 86811568 ID=Msa0383790-mRNA-1:exon:23007;Parent=Msa0383790-mRNA-1
chr3_1 exon 86811741 86811810 86811741 ID=Msa0383790-mRNA-1:exon:23008;Parent=Msa0383790-mRNA-1
chr3_1 exon 86811893 86811948 86811893 ID=Msa0383790-mRNA-1:exon:23009;Parent=Msa0383790-mRNA-1
chr3_1 exon 86812052 86812123 86812052 ID=Msa0383790-mRNA-1:exon:23010;Parent=Msa0383790-mRNA-1
chr3_1 exon 86813132 86813371 86813132 ID=Msa0383790-mRNA-1:exon:23011;Parent=Msa0383790-mRNA-1
chr3_1 exon 86813460 86813589 86813460 ID=Msa0383790-mRNA-1:exon:23012;Parent=Msa0383790-mRNA-1
chr3_1 exon 86813697 86813915 86813697 ID=Msa0383790-mRNA-1:exon:23013;Parent=Msa0383790-mRNA-1
chr3_1 exon 86814020 86814150 86814020 ID=Msa0383790-mRNA-1:exon:23014;Parent=Msa0383790-mRNA-1
chr3_1 exon 86814229 86814403 86814229 ID=Msa0383790-mRNA-1:exon:23015;Parent=Msa0383790-mRNA-1
chr3_1 exon 86814535 86814625 86814535 ID=Msa0383790-mRNA-1:exon:23016;Parent=Msa0383790-mRNA-1
chr3_1 exon 86814761 86814918 86814761 ID=Msa0383790-mRNA-1:exon:23017;Parent=Msa0383790-mRNA-1
chr3_1 exon 86815011 86815199 86815011 ID=Msa0383790-mRNA-1:exon:23018;Parent=Msa0383790-mRNA-1
chr3_1 exon 86815281 86815970 86815281 ID=Msa0383790-mRNA-1:exon:23019;Parent=Msa0383790-mRNA-1
chr3_1 five_prime_UTR 86810373 86810621 86810373 ID=Msa0383790-mRNA-1:five_prime_utr;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86810622 86810969 86810622 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86811178 86811288 86811178 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86811568 86811641 86811568 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86811741 86811810 86811741 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86811893 86811948 86811893 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86812052 86812123 86812052 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86813132 86813371 86813132 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86813460 86813589 86813460 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86813697 86813915 86813697 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86814020 86814150 86814020 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86814229 86814403 86814229 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86814535 86814625 86814535 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86814761 86814918 86814761 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86815011 86815199 86815011 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 CDS 86815281 86815340 86815281 ID=Msa0383790-mRNA-1:cds;Parent=Msa0383790-mRNA-1
chr3_1 three_prime_UTR 86815341 86815970 86815341 ID=Msa0383790-mRNA-1:three_prime_utr;Parent=Msa0383790-mRNA-1
Gene Sequence

>Msa0383790

ATGCCTGAGTTGCGTACCCGACCTCGCATAAACCGTCTCACTGATAACGCGCCGCCGGTCGCCGGCGGGAGGAGAGCCGTCGCTGCCACCGCCGCACAGACCAGAAGGAATCGGAGGCAGAAGAAGAAGAAGAACACGATCGTTGCCGAGAAAATCGAAAACATTGTGAATAACGACGACGAAACAGGAGTAGAGAGATTGAAAGAAGAGGAAGGAGAGAATAAGAAGAGGGCAGTGGTTAGGGTTTCTAGAGAGGAAGCTATGGATGAGTACGATAGTGGTGGCCGTAGTGCCGATAAAGCTCCGGGAGCCGAAGAAGAAGGGAGTACAACTCCACTTCCTGAGAAGATTCAAGTTGGTGGTTCTCCATTATATAGATTAGATAGGAAGCTTGGGAAGGGAGGATTTGGGCAAGTCTATGTTGGCCGACGCGTAGGAGCTGGTTCTGGTGCCGTTGAGGTAGCATTAAAATTTGAGCATAGAAACAGCAAAGGGTGCAATTACGGACCTCCACATGAATGGCAGGTTTACAACACATTAGGTGGTAGTCATGGTGTTCCACGAGTACATTACAAGGGACGGCAAGGTGACTACTACATTATGGTCATGGATATGCTTGGCTCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCTACTGAAATGGTGGCATGTATTGCAATCGAGGCTATCTCTATATTAGAGAAGATGCATTGTAGAGGATATGTGCATGGTGATGTAAAGCCTGAAAACTTCTTGCTTGGACCCTCGGGAACCCCTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGATTAGGTAAAAAAAAAGCCATGTTACCCTTTGATGCTTTCATTGTCAATGAAGATATGCTTATTCTCTCACTTTTCTACACAGCAACTCGTTGGCGTGATAGTTCAACTGGCCTTCATGTTGATTATGATCAACGCCCAGATGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCACATCTTGGTAGAACAAGTAGCAGGAGAGATGACTTGGAATCCCTTGCTTACACGCTTGTCTTCCTTCTTCGTGGTCGGTTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCACCCGAAGCTTTGTGTTGCTTTTGTCCTGCACCTTTCCGGCAGTTTGTAGAATATGTAGTAAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATACATATCCCTTTTTGATGGAATTGTAGGTCCAAATCCTGACATTAGGCCCCTAAATACCGAGGGTGCTCAGAAGGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCCGAATGGGTCAGCCAGCAACACAGTGGATTAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGGTATCATTACAATGTGGCCGATGAGCGGCTTTCCCAACACATTGTAAAAGGAAATGAAGATGGTTTATTTATTAGCAGTGTGGCTTCTTGTGCTAGTCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACATCACAAGTTTACGAACTCTCTTCCAGTTTTCTTCACAAGGAATGGATTATGGAACAGTGGGATAAGAATTATTACATCAGTGCCATAGCTGGAGCTAGTAACGGGTCCTCATTGGTTGTAATGTCAAAAGGGACCCAATACATGCAACAATCCTATAAAGTCAGTGACTCGTTTCCATTTAAGTGGATCAACAAAAAATGGAGGGAAGGATTTTTTGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTACAGAGCAGGTTGTGGAACTTGATTTCCTGTACCCTAGTGAAGGTATTCATCGAAGGTGGGAAAACAATTACCGCATTACTGCAACTGCTGCAACGCCTGATCAAGCTGCTTTTATTTTAAGTGTCCCAAGAAGAAAACCACCTGATGAAACTCAAGAAACGCTCCGCACGTCTGATTTTCCTAGTACTCATGTTAAGGAAAAATGGGCAAAGAACCTCTATATCGCATCTATTAGTTATGGGAGAACAGTTTCATAA
Protein sequence

>Msa0383790

MPELRTRPRINRLTDNAPPVAGGRRAVAATAAQTRRNRRQKKKKNTIVAEKIENIVNNDDETGVERLKEEEGENKKRAVVRVSREEAMDEYDSGGRSADKAPGAEEEGSTTPLPEKIQVGGSPLYRLDRKLGKGGFGQVYVGRRVGAGSGAVEVALKFEHRNSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDMLGSSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHCRGYVHGDVKPENFLLGPSGTPDEKKLFLVDLGLGKKKAMLPFDAFIVNEDMLILSLFYTATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCFCPAPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPLNTEGAQKVGQKRGRLTMEEDDDEQPKKKVRMGQPATQWISVYNARRPMKQRYHYNVADERLSQHIVKGNEDGLFISSVASCASLWALIMDAGTGFTSQVYELSSSFLHKEWIMEQWDKNYYISAIAGASNGSSLVVMSKGTQYMQQSYKVSDSFPFKWINKKWREGFFVTAMATAGTRWAIVMSRGAGFTEQVVELDFLYPSEGIHRRWENNYRITATAATPDQAAFILSVPRRKPPDETQETLRTSDFPSTHVKEKWAKNLYIASISYGRTVS*