AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434170 MtrunA17_Chr3g0140431 98.997 598 2 1 89 682 1 598 0.0 1243
Msa0434170 MtrunA17_Chr1g0146301 86.066 610 77 4 81 682 75 684 0.0 1112
Msa0434170 MtrunA17_Chr7g0214531 78.655 595 121 1 93 681 4 598 0.0 1025
Msa0434170 MtrunA17_Chr8g0340491 78.182 605 123 3 86 682 88 691 0.0 986
Msa0434170 MtrunA17_Chr1g0213321 75.083 606 144 3 83 681 70 675 0.0 982
Msa0434170 MtrunA17_Chr7g0253211 75.465 591 140 1 96 681 294 884 0.0 973
Msa0434170 MtrunA17_Chr4g0071031 39.927 273 153 5 126 395 9 273 1.00e-59 207
Msa0434170 MtrunA17_Chr2g0329981 38.828 273 156 5 126 395 9 273 1.81e-58 204
Msa0434170 MtrunA17_Chr2g0299661 38.828 273 156 5 126 395 9 273 1.52e-57 202
Msa0434170 MtrunA17_Chr1g0166821 38.434 281 160 6 118 395 4 274 1.16e-56 199
Msa0434170 MtrunA17_Chr7g0261501 38.828 273 156 5 126 395 9 273 1.43e-56 199
Msa0434170 MtrunA17_Chr8g0342821 38.951 267 151 6 126 389 9 266 2.00e-56 199
Msa0434170 MtrunA17_Chr1g0187571 38.710 279 158 6 120 395 6 274 1.26e-55 196
Msa0434170 MtrunA17_Chr1g0183631 37.276 279 162 6 120 395 5 273 3.71e-54 192
Msa0434170 MtrunA17_Chr1g0167261 38.163 283 160 6 118 395 4 276 1.69e-53 187
Msa0434170 MtrunA17_Chr8g0390211 37.993 279 160 6 120 395 5 273 2.73e-53 189
Msa0434170 MtrunA17_Chr1g0146151 37.102 283 164 7 116 395 2 273 4.80e-53 188
Msa0434170 MtrunA17_Chr6g0486611 36.630 273 162 5 126 395 9 273 7.83e-53 188
Msa0434170 MtrunA17_Chr3g0140071 36.201 279 165 6 120 395 5 273 1.84e-52 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434170 AT2G25760.1 75.648 694 136 9 1 682 1 673 0.0 1086
Msa0434170 AT2G25760.2 75.036 697 138 10 1 682 1 676 0.0 1077
Msa0434170 AT3G13670.1 70.115 696 180 8 1 682 22 703 0.0 1007
Msa0434170 AT3G03940.1 74.257 606 149 2 83 681 95 700 0.0 975
Msa0434170 AT5G18190.2 74.419 602 147 2 87 681 89 690 0.0 972
Msa0434170 AT5G18190.1 74.419 602 147 2 87 681 89 690 0.0 972
Msa0434170 AT3G03930.1 69.388 245 74 1 438 681 43 287 2.44e-121 363
Msa0434170 AT4G26100.1 39.194 273 155 5 126 395 9 273 1.77e-58 204
Msa0434170 AT2G19470.1 39.560 273 154 5 126 395 9 273 5.34e-58 202
Msa0434170 AT3G23340.1 39.427 279 156 6 120 395 5 273 6.11e-58 202
Msa0434170 AT1G03930.1 38.790 281 159 6 118 395 3 273 8.75e-58 203
Msa0434170 AT1G72710.1 39.194 273 154 6 126 395 9 272 8.25e-57 200
Msa0434170 AT5G44100.1 37.367 281 163 6 118 395 3 273 1.32e-56 200
Msa0434170 AT5G44100.2 37.367 281 163 6 118 395 3 273 1.32e-56 200
Msa0434170 AT5G57015.1 38.462 273 157 5 126 395 9 273 1.54e-56 199
Msa0434170 AT4G14340.2 39.068 279 157 6 120 395 11 279 1.76e-56 196
Msa0434170 AT4G14340.1 39.068 279 157 6 120 395 11 279 2.00e-56 199
Msa0434170 AT4G28540.1 37.993 279 160 6 120 395 9 277 1.26e-55 197
Msa0434170 AT5G43320.1 39.068 279 157 6 120 395 5 273 1.42e-55 197
Msa0434170 AT5G43320.2 39.068 279 157 6 120 395 5 273 1.20e-54 191
Msa0434170 AT5G43320.3 39.068 279 157 6 120 395 5 273 1.20e-54 191
Msa0434170 AT1G04440.1 37.993 279 160 6 120 395 5 273 1.82e-54 194
Msa0434170 AT4G28860.2 37.993 279 160 6 120 395 5 273 1.82e-54 191
Msa0434170 AT4G28860.1 37.993 279 160 6 120 395 5 273 4.57e-54 191
Msa0434170 AT4G28880.3 38.351 279 159 6 120 395 5 273 7.69e-54 191
Msa0434170 AT4G28880.2 38.351 279 159 6 120 395 5 273 7.69e-54 191
Msa0434170 AT4G28880.1 38.351 279 159 6 120 395 5 273 7.69e-54 191
Msa0434170 AT4G28880.4 38.351 279 159 6 120 395 5 273 7.69e-54 191
Msa0434170 AT3G23340.2 38.697 261 149 5 138 395 7 259 6.30e-51 183
Msa0434170 AT4G08800.1 34.066 273 137 6 126 395 9 241 2.42e-42 155

Find 236 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGCTACACCTTTCTTTA+TGG 0.140701 3_2:+86956242 Msa0434170:three_prime_UTR
AATGCACCAACCTATGTATT+TGG 0.203168 3_2:+86956697 Msa0434170:three_prime_UTR
TCTGAGCACCCTCGGTATTT+AGG 0.209029 3_2:-86954650 None:intergenic
CCCATTCGGACCTTCTTCTT+TGG 0.219272 3_2:-86954830 None:intergenic
GACCCACAATTCCATCAAAA+AGG 0.232071 3_2:-86954608 None:intergenic
ACAATGTATAATGAGATATT+AGG 0.235440 3_2:-86951262 None:intergenic
TTTGAAAATAATACAGTATA+TGG 0.236549 3_2:-86956676 None:intergenic
CTGAGCACCCTCGGTATTTA+GGG 0.247642 3_2:-86954649 None:intergenic
CTTTCCCAACACATTGTAAA+AGG 0.251961 3_2:+86955016 Msa0434170:CDS
TGGCTTCTTGTGCTAGTCTT+TGG 0.253271 3_2:+86955068 Msa0434170:CDS
AAGCTTGGGAAGGGAGGATT+TGG 0.257494 3_2:+86951980 Msa0434170:CDS
TGTTTCACAGGAATGGATTA+TGG 0.259630 3_2:+86955284 Msa0434170:intron
ATCAACGCCCAGATGTATTT+AGG 0.259852 3_2:+86954109 Msa0434170:CDS
CTTCTGCCTCCGATTCCTTC+TGG 0.270294 3_2:-86951481 None:intergenic
AAACGAGTCACTGACTTTAT+AGG 0.282911 3_2:-86955541 None:intergenic
GGCTTCTTGTGCTAGTCTTT+GGG 0.284395 3_2:+86955069 Msa0434170:CDS
GGCTCCTCAATGTCTGAATT+TGG 0.290706 3_2:+86956559 Msa0434170:three_prime_UTR
ATATGCTTGGCTCTAGTCTA+TGG 0.295213 3_2:+86952661 Msa0434170:CDS
TGGCCACTGCTGGCACTAGA+TGG 0.300589 3_2:+86955616 Msa0434170:CDS
TATAGGATTGTTGCATGTAT+TGG 0.306085 3_2:-86955524 None:intergenic
GCTCAAAACCTTTGTTTCAT+TGG 0.309003 3_2:-86954896 None:intergenic
TAAGAAGAAGGCAGTGGTTA+GGG 0.314293 3_2:+86951605 Msa0434170:CDS
AGGGGCCTAATGTCAGGATT+TGG 0.316161 3_2:-86954630 None:intergenic
GCTCTAGTCTATGGGATGTT+TGG 0.316967 3_2:+86952670 Msa0434170:CDS
GCGAATCTCTCTCATCTTCA+TGG 0.318831 3_2:+86951340 Msa0434170:five_prime_UTR
CAATGTATAATGAGATATTA+GGG 0.327105 3_2:-86951261 None:intergenic
TTCGGCTCCCGGAGCTTTAT+CGG 0.329884 3_2:-86951676 None:intergenic
ATAGGATTGTTGCATGTATT+GGG 0.335579 3_2:-86955523 None:intergenic
TTTCTGGTTGATCTTGGATT+AGG 0.337171 3_2:+86953963 Msa0434170:CDS
ACCAACCTTGTGAAGAAAAC+TGG 0.342759 3_2:-86955146 None:intergenic
TAGTCTTTGGGCACTCATTA+TGG 0.347322 3_2:+86955081 Msa0434170:CDS
GTGAATAACGACGACGAAAC+AGG 0.354236 3_2:+86951549 Msa0434170:CDS
TGGGAGAACAGTTTCATAAA+TGG 0.360026 3_2:+86956081 Msa0434170:exon
ACACTAATCCACTGTGTTGC+TGG 0.363197 3_2:-86954857 None:intergenic
GTTACCTTGGCAAGGATATC+AGG 0.363733 3_2:+86954327 Msa0434170:CDS
TTCCTATCTAATCTATATAA+TGG 0.369860 3_2:-86951959 None:intergenic
CTCCCTTCTTCTTCGGCTCC+CGG 0.370094 3_2:-86951687 None:intergenic
AGAACAAACCTAAATACATC+TGG 0.381852 3_2:-86954117 None:intergenic
TTGTTACAGGGAGAAAATAA+AGG 0.383335 3_2:+86954447 Msa0434170:intron
GCAAGGTGACTACTACATTA+TGG 0.384482 3_2:+86952550 Msa0434170:CDS
CTCATTATGGATGCTGGCAC+TGG 0.386456 3_2:+86955094 Msa0434170:CDS
AACAGTAATTATTATGTTGA+AGG 0.391003 3_2:+86956401 Msa0434170:three_prime_UTR
AACAGCAAAGGGTGCAATTA+CGG 0.391275 3_2:+86952353 Msa0434170:CDS
TATAGATTAGATAGGAAGCT+TGG 0.395411 3_2:+86951965 Msa0434170:CDS
TATATCGCATCTATTAGTTA+TGG 0.395955 3_2:+86956061 Msa0434170:CDS
ATAAGAAGAAGGCAGTGGTT+AGG 0.397165 3_2:+86951604 Msa0434170:CDS
AACTTCTTGCTTGGACCCTC+GGG 0.405644 3_2:+86953918 Msa0434170:CDS
CGCCGCCGGTCGCCGGCGGG+AGG 0.407045 3_2:+86951430 Msa0434170:CDS
ACGCGCCGCCGGTCGCCGGC+GGG 0.411110 3_2:+86951427 Msa0434170:CDS
GTGACTCGTTTCCATTTAAG+TGG 0.412212 3_2:+86955553 Msa0434170:CDS
AGTTGTACTCCCTTCTTCTT+CGG 0.412608 3_2:-86951694 None:intergenic
TCAATGTCTGAATTTGGCCT+TGG 0.421015 3_2:+86956565 Msa0434170:three_prime_UTR
AAGTTGTTTCTGGTTGATCT+TGG 0.425523 3_2:+86953957 Msa0434170:CDS
CTCCATTATATAGATTAGAT+AGG 0.426261 3_2:+86951957 Msa0434170:CDS
ATATCGCATCTATTAGTTAT+GGG 0.426501 3_2:+86956062 Msa0434170:CDS
GGAATCAAAATCACCTTCTC+AGG 0.426563 3_2:-86951723 None:intergenic
ATTGTTATGTCCCGTGGTGC+TGG 0.431009 3_2:+86955642 Msa0434170:CDS
CGACGCGTAGGAGCTGGTTC+TGG 0.431637 3_2:+86952019 Msa0434170:CDS
AAACTTCTTGCTTGGACCCT+CGG 0.431706 3_2:+86953917 Msa0434170:CDS
GATAGGAAGCTTGGGAAGGG+AGG 0.432226 3_2:+86951974 Msa0434170:CDS
TTCTTCGTGGTCGGTTACCT+TGG 0.433456 3_2:+86954314 Msa0434170:CDS
CAAAAGCAACACAAAGCTTC+GGG 0.436504 3_2:-86954504 None:intergenic
ACTTCACTCATCAATGACTT+TGG 0.436857 3_2:+86951310 Msa0434170:five_prime_UTR
AACGCGCCGCCGGTCGCCGG+CGG 0.437647 3_2:+86951426 Msa0434170:CDS
CCTTCTGGTCTGTGCGGCGG+TGG 0.439587 3_2:-86951466 None:intergenic
GTCACTGCTATGGCCACTGC+TGG 0.440107 3_2:+86955606 Msa0434170:CDS
TGGGTCCAAATCCTGACATT+AGG 0.442025 3_2:+86954625 Msa0434170:CDS
AGCGTTTCTTGAGTTTCATC+AGG 0.442256 3_2:-86955902 None:intergenic
ACGCTTGTCTTCCTTCTTCG+TGG 0.445559 3_2:+86954301 Msa0434170:CDS
ACAAAAGCAACACAAAGCTT+CGG 0.446009 3_2:-86954505 None:intergenic
AAAATAAAAGCAGCTTGATC+AGG 0.446910 3_2:-86955857 None:intergenic
AAGCCTGAAAACTTCTTGCT+TGG 0.452042 3_2:+86953909 Msa0434170:CDS
GTATTTAGGGGCCTAATGTC+AGG 0.452090 3_2:-86954636 None:intergenic
CGTTGGCGTGATAGTTCAAC+TGG 0.453748 3_2:+86954069 Msa0434170:CDS
CTGTGCGGCGGTGGCAGCGA+CGG 0.454161 3_2:-86951457 None:intergenic
TTTACCTTAACATGAGTACT+AGG 0.455799 3_2:-86955941 None:intergenic
TATTACATCAGTGCCATAGC+TGG 0.456706 3_2:+86955324 Msa0434170:CDS
GTTGGCCGACGCGTAGGAGC+TGG 0.466210 3_2:+86952013 Msa0434170:CDS
GGTTTGTGATGAGAGGGAAA+TGG 0.469323 3_2:-86951240 None:intergenic
AAAATCACCTTCTCAGGAAG+TGG 0.470398 3_2:-86951717 None:intergenic
CTCCTCCCGCCGGCGACCGG+CGG 0.471128 3_2:-86951432 None:intergenic
GCTCTCCTCCCGCCGGCGAC+CGG 0.471790 3_2:-86951435 None:intergenic
TGGGCACTCATTATGGATGC+TGG 0.472875 3_2:+86955088 Msa0434170:CDS
AGCTAGTAACGGGTCCTCAT+TGG 0.474983 3_2:+86955347 Msa0434170:CDS
ATCTAGGATGTCTACTGAAA+TGG 0.475531 3_2:+86952807 Msa0434170:intron
CGAGGTCGGGTACGCAACTC+AGG 0.476552 3_2:-86951384 None:intergenic
GATAACGCGCCGCCGGTCGC+CGG 0.478774 3_2:+86951423 Msa0434170:CDS
TCATTGGTTGTAATGTCAAA+AGG 0.480800 3_2:+86955363 Msa0434170:CDS
AGCTTGGGAAGGGAGGATTT+GGG 0.483807 3_2:+86951981 Msa0434170:CDS
CTACATATTCTACAAACTGC+CGG 0.484853 3_2:-86954539 None:intergenic
AACTAATAGATGCGATATAG+AGG 0.485124 3_2:-86956057 None:intergenic
ATTGTAAAAGGAAATGAAGA+TGG 0.488040 3_2:+86955028 Msa0434170:CDS
GGAAGACAAGCGTGTAAGCA+AGG 0.490386 3_2:-86954291 None:intergenic
ATAGATTAGATAGGAAGCTT+GGG 0.491550 3_2:+86951966 Msa0434170:CDS
CCGCACAGACCAGAAGGAAT+CGG 0.493586 3_2:+86951472 Msa0434170:CDS
CTCTGTAAATCCAGCACCAC+GGG 0.494784 3_2:-86955652 None:intergenic
TTCATCATCATCCTCTTCCA+TGG 0.494964 3_2:-86954804 None:intergenic
TAGGTCAAAATCATATCAGC+TGG 0.495543 3_2:-86956122 None:intergenic
GTGTTGCTGGCTGACCCATT+CGG 0.496471 3_2:-86954844 None:intergenic
TTAGATAGGAAGCTTGGGAA+GGG 0.503149 3_2:+86951971 Msa0434170:CDS
CGTAGTGCCGATAAAGCTCC+GGG 0.503731 3_2:+86951669 Msa0434170:CDS
GCTCCGGGAGCCGAAGAAGA+AGG 0.504739 3_2:+86951684 Msa0434170:CDS
CCGTAGTGCCGATAAAGCTC+CGG 0.505206 3_2:+86951668 Msa0434170:CDS
ATTACGCTATTACAAACTGC+TGG 0.506619 3_2:-86956610 None:intergenic
CTTGCCTACACATCTGAGTT+GGG 0.508086 3_2:+86956159 Msa0434170:three_prime_UTR
GGAAGGAGAGAATAAGAAGA+AGG 0.510183 3_2:+86951593 Msa0434170:CDS
GTAGAATGCAGTTTCCGCAT+TGG 0.512382 3_2:+86956211 Msa0434170:three_prime_UTR
CCATAGCTGGAGCTAGTAAC+GGG 0.513636 3_2:+86955337 Msa0434170:CDS
ATTAGATAGGAAGCTTGGGA+AGG 0.514540 3_2:+86951970 Msa0434170:CDS
ATTCTACAAGAAATTTATCA+TGG 0.514722 3_2:-86956195 None:intergenic
TATTAGGGTTTGTGATGAGA+GGG 0.517092 3_2:-86951246 None:intergenic
ATATTAGGGTTTGTGATGAG+AGG 0.520286 3_2:-86951247 None:intergenic
TTGTCTTCCTTCTTCGTGGT+CGG 0.524778 3_2:+86954305 Msa0434170:CDS
GCTATGGATGAGTACGATAG+TGG 0.525051 3_2:+86951642 Msa0434170:CDS
CTTCGATGAATACCTTCACT+AGG 0.528484 3_2:-86955794 None:intergenic
TAGCTTTAAATCAAGAGGTA+AGG 0.529304 3_2:-86956530 None:intergenic
TTCTCATCAGGGGTTCCCGA+GGG 0.529311 3_2:-86953933 None:intergenic
GCTTGCCTACACATCTGAGT+TGG 0.529392 3_2:+86956158 Msa0434170:three_prime_UTR
GGATTTGGGCAAGTCTATGT+TGG 0.531558 3_2:+86951995 Msa0434170:CDS
GAATACCTTCACTAGGGTAC+AGG 0.532543 3_2:-86955787 None:intergenic
CCAAAGAAGAAGGTCCGAAT+GGG 0.533192 3_2:+86954830 Msa0434170:CDS
TGAAGTATCGTATATAAGAG+AGG 0.533311 3_2:-86951293 None:intergenic
TAATTACAGATTCAAGTTGG+TGG 0.534253 3_2:+86951932 Msa0434170:intron
ATGATGACAACCATAAAGAA+AGG 0.534545 3_2:-86956252 None:intergenic
AGGACGATTGACCATGGAAG+AGG 0.534909 3_2:+86954793 Msa0434170:CDS
TTATAGCACCCAGTTCCCGC+TGG 0.535540 3_2:-86956477 None:intergenic
ATTACGGACCTCCACATGAA+TGG 0.537264 3_2:+86952369 Msa0434170:CDS
TCTTAATTACAGATTCAAGT+TGG 0.538540 3_2:+86951929 Msa0434170:intron
ACAAACTGCCGGAAAGGTGC+AGG 0.538874 3_2:-86954528 None:intergenic
TATGCTTGGCTCTAGTCTAT+GGG 0.539645 3_2:+86952662 Msa0434170:CDS
AGCTGGTTCTGGTGCCGTTG+AGG 0.543472 3_2:+86952030 Msa0434170:CDS
GGTTTCTAGAGAGGAAGCTA+TGG 0.545782 3_2:+86951626 Msa0434170:CDS
AAGAAACCAAATACATAGGT+TGG 0.545816 3_2:-86956703 None:intergenic
GAGACGGTTTATGCGAGGTC+GGG 0.546267 3_2:-86951397 None:intergenic
CGGACCTCCACATGAATGGC+AGG 0.546511 3_2:+86952373 Msa0434170:CDS
TGGTGCTGGATTTACAGAGC+AGG 0.546908 3_2:+86955656 Msa0434170:CDS
GAGAGATTGAAAGAAGAGGA+AGG 0.548043 3_2:+86951576 Msa0434170:CDS
GGCCACTGCTGGCACTAGAT+GGG 0.549197 3_2:+86955617 Msa0434170:CDS
AGAGAATAAGAAGAAGGCAG+TGG 0.549582 3_2:+86951599 Msa0434170:CDS
AAGGTAACCGACCACGAAGA+AGG 0.552994 3_2:-86954312 None:intergenic
GTGAAGGTATTCATCGAAGG+TGG 0.556433 3_2:+86955798 Msa0434170:CDS
TTTCTCATCAGGGGTTCCCG+AGG 0.557461 3_2:-86953934 None:intergenic
CTCCGGGAGCCGAAGAAGAA+GGG 0.558776 3_2:+86951685 Msa0434170:CDS
TGAGCACCCTCGGTATTTAG+GGG 0.558929 3_2:-86954648 None:intergenic
ACTCAGATGTGTAGGCAAGC+GGG 0.559158 3_2:-86956155 None:intergenic
TGATGAACAACCAAAGAAGA+AGG 0.560213 3_2:+86954820 Msa0434170:CDS
AGTGGTTAGGGTTTCTAGAG+AGG 0.560234 3_2:+86951617 Msa0434170:CDS
AGGAATGGATTATGGAACAG+TGG 0.562856 3_2:+86955292 Msa0434170:intron
AAGTAGGCCTACCTTGTACT+TGG 0.563694 3_2:+86956498 Msa0434170:three_prime_UTR
CGTGGTCGGTTACCTTGGCA+AGG 0.564377 3_2:+86954319 Msa0434170:CDS
ATTCAGACATTGAGGAGCCT+CGG 0.564430 3_2:-86956555 None:intergenic
AAATACCGAGGGTGCTCAGA+AGG 0.565005 3_2:+86954653 Msa0434170:CDS
CACGAGTACATTACAAGGGA+CGG 0.566096 3_2:+86952528 Msa0434170:CDS
AGTAGAGAGATTGAAAGAAG+AGG 0.566314 3_2:+86951572 Msa0434170:CDS
GGATAAAAGAGCCAAGTACA+AGG 0.566325 3_2:-86956509 None:intergenic
TTTAGAGATCTGTGATGGGA+GGG 0.566369 3_2:-86951212 None:intergenic
GGGAACTGGGTGCTATAAGT+AGG 0.567142 3_2:+86956482 Msa0434170:three_prime_UTR
GCTAGTGTGCATGCACATCT+TGG 0.567152 3_2:+86954235 Msa0434170:CDS
AAGTAGCAGGAGAGATGACT+TGG 0.570146 3_2:+86954264 Msa0434170:CDS
TAGAGAAGATGCATTGTAGA+GGG 0.572443 3_2:+86952863 Msa0434170:CDS
AAGTGTTTAGAGATCTGTGA+TGG 0.573312 3_2:-86951217 None:intergenic
CCACCGCCGCACAGACCAGA+AGG 0.573426 3_2:+86951466 Msa0434170:CDS
ACCAAAGAAGAAGGTCCGAA+TGG 0.576715 3_2:+86954829 Msa0434170:CDS
CGGAGTAGCTTTAAATCAAG+AGG 0.576803 3_2:-86956535 None:intergenic
TATTCTACAAACTGCCGGAA+AGG 0.578047 3_2:-86954534 None:intergenic
GTTTCTTGAGTTTCATCAGG+TGG 0.578812 3_2:-86955899 None:intergenic
ACACAAAGCTTCGGGTGAAG+TGG 0.580070 3_2:-86954496 None:intergenic
ACACAGGTCATGGATATGCT+TGG 0.581027 3_2:+86952648 Msa0434170:intron
GAAGTATCGTATATAAGAGA+GGG 0.582036 3_2:-86951292 None:intergenic
GCCATAGCTGGAGCTAGTAA+CGG 0.586802 3_2:+86955336 Msa0434170:CDS
GAACAAACCTAAATACATCT+GGG 0.586854 3_2:-86954116 None:intergenic
TGTTCCACGAGTACATTACA+AGG 0.586861 3_2:+86952523 Msa0434170:CDS
GGAATGGATTATGGAACAGT+GGG 0.588580 3_2:+86955293 Msa0434170:intron
GTCTATGTTGGCCGACGCGT+AGG 0.589738 3_2:+86952007 Msa0434170:CDS
TACAACTCCACTTCCTGAGA+AGG 0.591492 3_2:+86951710 Msa0434170:CDS
GTGTTGGGAAAGCCGCTCAT+CGG 0.591532 3_2:-86955005 None:intergenic
ATCTTGGTAGAACAAGTAGC+AGG 0.592624 3_2:+86954251 Msa0434170:CDS
AGTTCCCAACTCAGATGTGT+AGG 0.592708 3_2:-86956163 None:intergenic
TTAGAGAAGATGCATTGTAG+AGG 0.593386 3_2:+86952862 Msa0434170:CDS
AACTCAGATGTGTAGGCAAG+CGG 0.596134 3_2:-86956156 None:intergenic
TGAGACGGTTTATGCGAGGT+CGG 0.596794 3_2:-86951398 None:intergenic
AGCACATTAGGTGGTAGTCA+TGG 0.600563 3_2:+86952500 Msa0434170:intron
TCTCACTGATAACGCGCCGC+CGG 0.600651 3_2:+86951416 Msa0434170:CDS
AGCGACGGCTCTCCTCCCGC+CGG 0.600658 3_2:-86951442 None:intergenic
ATAACCTGATATCCTTGCCA+AGG 0.602758 3_2:-86954331 None:intergenic
AAAAGAGCCAAGTACAAGGT+AGG 0.604138 3_2:-86956505 None:intergenic
AAGGCCAAATTCAGACATTG+AGG 0.604160 3_2:-86956563 None:intergenic
GTTGATCATAATCAACATGA+AGG 0.605161 3_2:-86954092 None:intergenic
TTGTAATAGCGTAATCATTG+TGG 0.606706 3_2:+86956618 Msa0434170:three_prime_UTR
GATTTCCTGTACCCTAGTGA+AGG 0.606757 3_2:+86955782 Msa0434170:CDS
CACAGACCAGAAGGAATCGG+AGG 0.609955 3_2:+86951475 Msa0434170:CDS
TGAAGGTATTCATCGAAGGT+GGG 0.610628 3_2:+86955799 Msa0434170:CDS
CTCGTAGACCAATGAAACAA+AGG 0.611155 3_2:+86954888 Msa0434170:CDS
TTGTAAACCTGCCATTCATG+TGG 0.611605 3_2:-86952380 None:intergenic
TAGGATGTCTACTGAAATGG+TGG 0.612266 3_2:+86952810 Msa0434170:intron
TTGAGCATAGAAACAGCAAA+GGG 0.612579 3_2:+86952342 Msa0434170:CDS
CCCGTTACTAGCTCCAGCTA+TGG 0.614186 3_2:-86955337 None:intergenic
TTTGAGCATAGAAACAGCAA+AGG 0.615974 3_2:+86952341 Msa0434170:CDS
AAGTACCTTCTGAGCACCCT+CGG 0.619914 3_2:-86954658 None:intergenic
CCCAAAGAAACCAAATACAT+AGG 0.620931 3_2:-86956707 None:intergenic
AAAGAGAGGACGATTGACCA+TGG 0.622958 3_2:+86954787 Msa0434170:CDS
ATTCCTTCTGGTCTGTGCGG+CGG 0.623393 3_2:-86951469 None:intergenic
TTCGATGAATACCTTCACTA+GGG 0.624580 3_2:-86955793 None:intergenic
CGTCCCTTGTAATGTACTCG+TGG 0.624983 3_2:-86952527 None:intergenic
GGTGGCATGTATTGCAATCG+AGG 0.627258 3_2:+86952828 Msa0434170:CDS
CCGGAGCTTTATCGGCACTA+CGG 0.627559 3_2:-86951668 None:intergenic
GTTTAGAGATCTGTGATGGG+AGG 0.627689 3_2:-86951213 None:intergenic
TAAACCTGCCATTCATGTGG+AGG 0.628206 3_2:-86952377 None:intergenic
GTACATTACAAGGGACGGCA+AGG 0.629460 3_2:+86952533 Msa0434170:CDS
ATTACAATGTGGCCGATGAG+CGG 0.631315 3_2:+86954993 Msa0434170:CDS
TGCCCATCTAGTGCCAGCAG+TGG 0.632198 3_2:-86955619 None:intergenic
GCGGCGCGTTATCAGTGAGA+CGG 0.633560 3_2:-86951413 None:intergenic
TGTTGTTGCAGATATGTGCA+TGG 0.634497 3_2:+86953879 Msa0434170:intron
GAAGACAAGCGTGTAAGCAA+GGG 0.638778 3_2:-86954290 None:intergenic
TTGCAGCAGTTGCAGTAATG+CGG 0.640610 3_2:-86955832 None:intergenic
CTAGTGAAGGTATTCATCGA+AGG 0.644295 3_2:+86955795 Msa0434170:CDS
TGGGCAATTGTTATGTCCCG+TGG 0.648130 3_2:+86955636 Msa0434170:CDS
TACTAGGAAAATCAGACGTG+CGG 0.651938 3_2:-86955925 None:intergenic
TGGTTTATTTATTAGCAGTG+TGG 0.653080 3_2:+86955048 Msa0434170:CDS
AGGCATCGTAAAGATAGCGT+TGG 0.654933 3_2:-86951364 None:intergenic
AAACACCGTACATACCTCAA+CGG 0.667251 3_2:-86952044 None:intergenic
TGTCAGGTTGGACAAAAGAG+AGG 0.668670 3_2:+86954773 Msa0434170:intron
ATGGATGAGTACGATAGTGG+TGG 0.670453 3_2:+86951645 Msa0434170:CDS
CAGAACCAGCTCCTACGCGT+CGG 0.671406 3_2:-86952018 None:intergenic
GCTCTGTAAATCCAGCACCA+CGG 0.673158 3_2:-86955653 None:intergenic
CATTAGGCCCCTAAATACCG+AGG 0.680909 3_2:+86954641 Msa0434170:CDS
TCAGTGAGACGGTTTATGCG+AGG 0.681265 3_2:-86951402 None:intergenic
CTACAAGAAATTTATCATGG+AGG 0.683620 3_2:-86956192 None:intergenic
ATTAGGCCCCTAAATACCGA+GGG 0.697940 3_2:+86954642 Msa0434170:CDS
AGTGTTTAGAGATCTGTGAT+GGG 0.703597 3_2:-86951216 None:intergenic
TGGGTCAGCCAGCAACACAG+TGG 0.714696 3_2:+86954849 Msa0434170:CDS
GCGTAGGTATCATTACAATG+TGG 0.721199 3_2:+86954982 Msa0434170:intron
GTTCCACGAGTACATTACAA+GGG 0.736863 3_2:+86952524 Msa0434170:CDS
CTTGATTTAAAGCTACTCCG+AGG 0.740070 3_2:+86956538 Msa0434170:three_prime_UTR
CCGATTCCTTCTGGTCTGTG+CGG 0.742167 3_2:-86951472 None:intergenic
GCATACTGCAAGCACCAATG+CGG 0.744347 3_2:-86956225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTTTAATTTTGTAA+GGG + chr3_2:86952119-86952138 Msa0434170:intron 10.0%
!! AAAAAACTTTATAAAATGTA+AGG + chr3_2:86952167-86952186 Msa0434170:intron 10.0%
!! AAAAACTTTATAAAATGTAA+GGG + chr3_2:86952168-86952187 Msa0434170:intron 10.0%
!!! TAAGTTTTTTAATAAAGTAA+TGG + chr3_2:86952583-86952602 Msa0434170:intron 10.0%
!!! AAGTTTTTTAATAAAGTAAT+GGG + chr3_2:86952584-86952603 Msa0434170:intron 10.0%
!! ATAATAAATATAATATAACC+AGG - chr3_2:86952902-86952921 None:intergenic 10.0%
!! TTATTTATGCAAAAATAAAT+CGG + chr3_2:86953111-86953130 Msa0434170:intron 10.0%
!!! CTGAATTTTTTAATTTTGTA+AGG + chr3_2:86952118-86952137 Msa0434170:intron 15.0%
!!! TTGTTACATAATATTTTAGT+TGG + chr3_2:86952142-86952161 Msa0434170:intron 15.0%
!!! AGTTTTTTAATAAAGTAATG+GGG + chr3_2:86952585-86952604 Msa0434170:intron 15.0%
!! ATCTATTATATTACTAACAT+TGG - chr3_2:86953773-86953792 None:intergenic 15.0%
!!! TACATACATTGATTTAAATA+AGG - chr3_2:86954161-86954180 None:intergenic 15.0%
!! TATTTAAATCAATGTATGTA+TGG + chr3_2:86954161-86954180 Msa0434170:intron 15.0%
!!! TAATTATTTTTGTTTGATGA+TGG + chr3_2:86956426-86956445 Msa0434170:three_prime_UTR 15.0%
!! TTTGAAAATAATACAGTATA+TGG - chr3_2:86956679-86956698 None:intergenic 15.0%
!! CAATGTATAATGAGATATTA+GGG - chr3_2:86951264-86951283 None:intergenic 20.0%
!! ACAATGTATAATGAGATATT+AGG - chr3_2:86951265-86951284 None:intergenic 20.0%
!! TTCCTATCTAATCTATATAA+TGG - chr3_2:86951962-86951981 None:intergenic 20.0%
!! TGATTAAATAACATTGTTGT+GGG + chr3_2:86952236-86952255 Msa0434170:intron 20.0%
!!! GTTTTTTAATAAAGTAATGG+GGG + chr3_2:86952586-86952605 Msa0434170:intron 20.0%
!!! CATATTTTTTGTAAATGTCT+TGG + chr3_2:86952749-86952768 Msa0434170:intron 20.0%
!!! TTTTACTAAATTAAGTGTTG+TGG + chr3_2:86953204-86953223 Msa0434170:intron 20.0%
!! ATTTAATTGAGATACAGTAA+TGG - chr3_2:86953477-86953496 None:intergenic 20.0%
!! AAGAACAAAAACAAATTTGA+GGG - chr3_2:86953680-86953699 None:intergenic 20.0%
!!! TTATGAAATTGTTTGTTACA+GGG + chr3_2:86954435-86954454 Msa0434170:intron 20.0%
!!! GATATGTATTTTGCATAATT+TGG - chr3_2:86954588-86954607 None:intergenic 20.0%
!! TACATGTGTTATATCATTTA+AGG + chr3_2:86954696-86954715 Msa0434170:intron 20.0%
!! AAATATAGAAAGTCAAAACT+GGG - chr3_2:86954960-86954979 None:intergenic 20.0%
!! AAAATATAGAAAGTCAAAAC+TGG - chr3_2:86954961-86954980 None:intergenic 20.0%
!!! AGTTTTGACTTTCTATATTT+TGG + chr3_2:86954960-86954979 Msa0434170:intron 20.0%
!! TCTTGATGCATTATATATTT+AGG + chr3_2:86955398-86955417 Msa0434170:intron 20.0%
!!! TATTTGATATATTTTTCTGC+AGG + chr3_2:86956018-86956037 Msa0434170:intron 20.0%
!! ATTCTACAAGAAATTTATCA+TGG - chr3_2:86956198-86956217 None:intergenic 20.0%
!! AACAGTAATTATTATGTTGA+AGG + chr3_2:86956401-86956420 Msa0434170:three_prime_UTR 20.0%
! ACAAGAAACAAAAATAGAGA+AGG - chr3_2:86951790-86951809 None:intergenic 25.0%
!! GATAATTTTTGTCATGTGTT+AGG + chr3_2:86951884-86951903 Msa0434170:intron 25.0%
! TCTTAATTACAGATTCAAGT+TGG + chr3_2:86951929-86951948 Msa0434170:intron 25.0%
! CTCCATTATATAGATTAGAT+AGG + chr3_2:86951957-86951976 Msa0434170:CDS 25.0%
! GTGATTAAATAACATTGTTG+TGG + chr3_2:86952235-86952254 Msa0434170:intron 25.0%
! TTTACTAACAGATTGTCTAT+GGG + chr3_2:86952938-86952957 Msa0434170:intron 25.0%
! TTATGCAAAAATAAATCGGT+TGG + chr3_2:86953115-86953134 Msa0434170:intron 25.0%
! TATGCAAAAATAAATCGGTT+GGG + chr3_2:86953116-86953135 Msa0434170:intron 25.0%
! TATCATTCTGTGATTATGAT+AGG + chr3_2:86953502-86953521 Msa0434170:intron 25.0%
! ATCATTCTGTGATTATGATA+GGG + chr3_2:86953503-86953522 Msa0434170:intron 25.0%
! GAAGAACAAAAACAAATTTG+AGG - chr3_2:86953681-86953700 None:intergenic 25.0%
! GATTCTGTATATCATATTCT+TGG + chr3_2:86954193-86954212 Msa0434170:intron 25.0%
!! CTTATGAAATTGTTTGTTAC+AGG + chr3_2:86954434-86954453 Msa0434170:intron 25.0%
!! AAATACATATCCCTTTTTGA+TGG + chr3_2:86954597-86954616 Msa0434170:CDS 25.0%
!! ATTTCCTTTTACAATGTGTT+GGG - chr3_2:86955023-86955042 None:intergenic 25.0%
! ATTGTAAAAGGAAATGAAGA+TGG + chr3_2:86955028-86955047 Msa0434170:CDS 25.0%
! GATGCATTATATATTTAGGA+TGG + chr3_2:86955402-86955421 Msa0434170:intron 25.0%
!! TTTTTGTTGATCCACTTAAA+TGG - chr3_2:86955567-86955586 None:intergenic 25.0%
! TTAAGTGGATCAACAAAAAA+TGG + chr3_2:86955568-86955587 Msa0434170:CDS 25.0%
! ACAATGAATACATGAAAATC+AGG - chr3_2:86955975-86955994 None:intergenic 25.0%
!! ATATTTTTCTGCAGGAAAAA+TGG + chr3_2:86956026-86956045 Msa0434170:intron 25.0%
!! TATTTTTCTGCAGGAAAAAT+GGG + chr3_2:86956027-86956046 Msa0434170:intron 25.0%
! TATATCGCATCTATTAGTTA+TGG + chr3_2:86956061-86956080 Msa0434170:CDS 25.0%
! ATATCGCATCTATTAGTTAT+GGG + chr3_2:86956062-86956081 Msa0434170:CDS 25.0%
!! TTAGATCTTTTGTGTCAATT+GGG + chr3_2:86956344-86956363 Msa0434170:three_prime_UTR 25.0%
!! GAAGTATCGTATATAAGAGA+GGG - chr3_2:86951295-86951314 None:intergenic 30.0%
!! TGAAGTATCGTATATAAGAG+AGG - chr3_2:86951296-86951315 None:intergenic 30.0%
! CACAATGTTTTCGATTTTCT+CGG - chr3_2:86951532-86951551 None:intergenic 30.0%
!! TAATTACAGATTCAAGTTGG+TGG + chr3_2:86951932-86951951 Msa0434170:intron 30.0%
TATAGATTAGATAGGAAGCT+TGG + chr3_2:86951965-86951984 Msa0434170:CDS 30.0%
ATAGATTAGATAGGAAGCTT+GGG + chr3_2:86951966-86951985 Msa0434170:CDS 30.0%
! ATTGATACATGTTGCCATTT+GGG + chr3_2:86952092-86952111 Msa0434170:intron 30.0%
AAAAAATTCAGACACCCAAA+TGG - chr3_2:86952109-86952128 None:intergenic 30.0%
GGAAAAAATTTGTACACCAA+AGG + chr3_2:86952257-86952276 Msa0434170:intron 30.0%
ATAAAAGTCATAGATGCCTT+TGG - chr3_2:86952276-86952295 None:intergenic 30.0%
TTAATGCTACCTGCAATTAT+TGG - chr3_2:86952319-86952338 None:intergenic 30.0%
CTCTATTGAAACAGAAAAGA+GGG - chr3_2:86952415-86952434 None:intergenic 30.0%
ACTCTATTGAAACAGAAAAG+AGG - chr3_2:86952416-86952435 None:intergenic 30.0%
! TCTTTTCTGTTTCAATAGAG+TGG + chr3_2:86952415-86952434 Msa0434170:intron 30.0%
!!! CTCACTTTTTATAGCACATT+AGG + chr3_2:86952488-86952507 Msa0434170:intron 30.0%
! ACTTTTTATAGCACATTAGG+TGG + chr3_2:86952491-86952510 Msa0434170:intron 30.0%
TGTAACATAATGTTACACAC+AGG + chr3_2:86952632-86952651 Msa0434170:intron 30.0%
!!! GTCTAACCTTAGTTCTTTTT+TGG + chr3_2:86952784-86952803 Msa0434170:intron 30.0%
CTAGATCCAAAAAAGAACTA+AGG - chr3_2:86952793-86952812 None:intergenic 30.0%
!!! CTTAGTTCTTTTTTGGATCT+AGG + chr3_2:86952791-86952810 Msa0434170:intron 30.0%
CTTTACTAACAGATTGTCTA+TGG + chr3_2:86952937-86952956 Msa0434170:intron 30.0%
TTACTAACAGATTGTCTATG+GGG + chr3_2:86952939-86952958 Msa0434170:intron 30.0%
AACACCCAAATGATAACATA+AGG - chr3_2:86952986-86953005 None:intergenic 30.0%
!!! ATAGTTTTTTTTTTACCCCG+AGG + chr3_2:86953077-86953096 Msa0434170:intron 30.0%
AAATAAATGTTGCTCAACCT+CGG - chr3_2:86953097-86953116 None:intergenic 30.0%
! AAATTCTTCTGATTTAGCTC+TGG + chr3_2:86953154-86953173 Msa0434170:intron 30.0%
! TACTAAATTAAGTGTTGTGG+AGG + chr3_2:86953207-86953226 Msa0434170:intron 30.0%
! AGGTTTCTTTTTATCCAGTA+GGG + chr3_2:86953257-86953276 Msa0434170:intron 30.0%
ATTTACTAATTGACCATTGC+AGG - chr3_2:86953709-86953728 None:intergenic 30.0%
TTACTAACATTGGTATTGCA+TGG - chr3_2:86953763-86953782 None:intergenic 30.0%
!! AAACAACTTTTTCTCATCAG+GGG - chr3_2:86953946-86953965 None:intergenic 30.0%
!! GAAACAACTTTTTCTCATCA+GGG - chr3_2:86953947-86953966 None:intergenic 30.0%
!! AGAAACAACTTTTTCTCATC+AGG - chr3_2:86953948-86953967 None:intergenic 30.0%
! TGATGAGAAAAAGTTGTTTC+TGG + chr3_2:86953947-86953966 Msa0434170:CDS 30.0%
!! TTGACAATGAAAGCATCAAA+GGG - chr3_2:86954009-86954028 None:intergenic 30.0%
!! ATTGACAATGAAAGCATCAA+AGG - chr3_2:86954010-86954029 None:intergenic 30.0%
GTTGATCATAATCAACATGA+AGG - chr3_2:86954095-86954114 None:intergenic 30.0%
GAACAAACCTAAATACATCT+GGG - chr3_2:86954119-86954138 None:intergenic 30.0%
AGAACAAACCTAAATACATC+TGG - chr3_2:86954120-86954139 None:intergenic 30.0%
TGTATATCATATTCTTGGCA+GGG + chr3_2:86954198-86954217 Msa0434170:intron 30.0%
TTGTTACAGGGAGAAAATAA+AGG + chr3_2:86954447-86954466 Msa0434170:intron 30.0%
!! ATAAAAGGGCTTTAAGAGTA+TGG - chr3_2:86954730-86954749 None:intergenic 30.0%
! ATACTCTTAAAGCCCTTTTA+TGG + chr3_2:86954729-86954748 Msa0434170:intron 30.0%
! TACTCTTAAAGCCCTTTTAT+GGG + chr3_2:86954730-86954749 Msa0434170:intron 30.0%
! CATTTCCTTTTACAATGTGT+TGG - chr3_2:86955024-86955043 None:intergenic 30.0%
TGGTTTATTTATTAGCAGTG+TGG + chr3_2:86955048-86955067 Msa0434170:CDS 30.0%
AAATCATGAATCTGTTTCAC+AGG + chr3_2:86955272-86955291 Msa0434170:intron 30.0%
! TTTTGACATTACAACCAATG+AGG - chr3_2:86955364-86955383 None:intergenic 30.0%
! TCATTGGTTGTAATGTCAAA+AGG + chr3_2:86955363-86955382 Msa0434170:CDS 30.0%
AGATTTAAACACAACACTAC+TGG - chr3_2:86955463-86955482 None:intergenic 30.0%
ATAGGATTGTTGCATGTATT+GGG - chr3_2:86955526-86955545 None:intergenic 30.0%
TATAGGATTGTTGCATGTAT+TGG - chr3_2:86955527-86955546 None:intergenic 30.0%
AAAATAAAAGCAGCTTGATC+AGG - chr3_2:86955860-86955879 None:intergenic 30.0%
! TTTTCCTAGTACTCATGTTA+AGG + chr3_2:86955937-86955956 Msa0434170:CDS 30.0%
TTTACCTTAACATGAGTACT+AGG - chr3_2:86955944-86955963 None:intergenic 30.0%
AACTAATAGATGCGATATAG+AGG - chr3_2:86956060-86956079 None:intergenic 30.0%
CTACAAGAAATTTATCATGG+AGG - chr3_2:86956195-86956214 None:intergenic 30.0%
ATGATGACAACCATAAAGAA+AGG - chr3_2:86956255-86956274 None:intergenic 30.0%
! CTTAGATCTTTTGTGTCAAT+TGG + chr3_2:86956343-86956362 Msa0434170:three_prime_UTR 30.0%
! ATGCAACTAAAATTTTCCAG+CGG + chr3_2:86956461-86956480 Msa0434170:three_prime_UTR 30.0%
!! TAGCTTTAAATCAAGAGGTA+AGG - chr3_2:86956533-86956552 None:intergenic 30.0%
! TAAACAACTTTTTGTCACCA+AGG - chr3_2:86956585-86956604 None:intergenic 30.0%
TTGTAATAGCGTAATCATTG+TGG + chr3_2:86956618-86956637 Msa0434170:three_prime_UTR 30.0%
AGTGTTTAGAGATCTGTGAT+GGG - chr3_2:86951219-86951238 None:intergenic 35.0%
AAGTGTTTAGAGATCTGTGA+TGG - chr3_2:86951220-86951239 None:intergenic 35.0%
TATTAGGGTTTGTGATGAGA+GGG - chr3_2:86951249-86951268 None:intergenic 35.0%
ATATTAGGGTTTGTGATGAG+AGG - chr3_2:86951250-86951269 None:intergenic 35.0%
ACTTCACTCATCAATGACTT+TGG + chr3_2:86951310-86951329 Msa0434170:five_prime_UTR 35.0%
AGTAGAGAGATTGAAAGAAG+AGG + chr3_2:86951572-86951591 Msa0434170:CDS 35.0%
CTTCACTATGAACATTTCTG+AGG - chr3_2:86951747-86951766 None:intergenic 35.0%
ATGGCAACATGTATCAATCA+CGG - chr3_2:86952090-86952109 None:intergenic 35.0%
GATTGATACATGTTGCCATT+TGG + chr3_2:86952091-86952110 Msa0434170:intron 35.0%
GATATTGCTCCAATAATTGC+AGG + chr3_2:86952307-86952326 Msa0434170:intron 35.0%
TTTGAGCATAGAAACAGCAA+AGG + chr3_2:86952341-86952360 Msa0434170:CDS 35.0%
TTGAGCATAGAAACAGCAAA+GGG + chr3_2:86952342-86952361 Msa0434170:CDS 35.0%
TGTGCTATAAAAAGTGAGCA+TGG - chr3_2:86952486-86952505 None:intergenic 35.0%
ATAATGTTACACACAGGTCA+TGG + chr3_2:86952638-86952657 Msa0434170:intron 35.0%
! ATCTAGGATGTCTACTGAAA+TGG + chr3_2:86952807-86952826 Msa0434170:intron 35.0%
TTAGAGAAGATGCATTGTAG+AGG + chr3_2:86952862-86952881 Msa0434170:CDS 35.0%
TAGAGAAGATGCATTGTAGA+GGG + chr3_2:86952863-86952882 Msa0434170:CDS 35.0%
TCTCGCCTTATGTTATCATT+TGG + chr3_2:86952978-86952997 Msa0434170:intron 35.0%
CTCGCCTTATGTTATCATTT+GGG + chr3_2:86952979-86952998 Msa0434170:intron 35.0%
!!! TGTTCCGTTTTTTTACCTCA+TGG + chr3_2:86953002-86953021 Msa0434170:intron 35.0%
!!! GTTCCGTTTTTTTACCTCAT+GGG + chr3_2:86953003-86953022 Msa0434170:intron 35.0%
!!! TTCCGTTTTTTTACCTCATG+GGG + chr3_2:86953004-86953023 Msa0434170:intron 35.0%
TTCCCCATGAGGTAAAAAAA+CGG - chr3_2:86953009-86953028 None:intergenic 35.0%
AATAAATGTTGCTCAACCTC+GGG - chr3_2:86953096-86953115 None:intergenic 35.0%
! GAGGTTTCTTTTTATCCAGT+AGG + chr3_2:86953256-86953275 Msa0434170:intron 35.0%
GAACTAATGAGAAAACTGCA+GGG - chr3_2:86953338-86953357 None:intergenic 35.0%
TGAACTAATGAGAAAACTGC+AGG - chr3_2:86953339-86953358 None:intergenic 35.0%
TGTGATTATGATAGGGACTT+GGG + chr3_2:86953510-86953529 Msa0434170:intron 35.0%
AAGTCCCAAATCAAGTAGTA+TGG + chr3_2:86953548-86953567 Msa0434170:intron 35.0%
!!! GGGTGAGTATTTTAGTAGAT+TGG + chr3_2:86953577-86953596 Msa0434170:intron 35.0%
ATCCTAAAAGCTAGCTATCA+AGG - chr3_2:86953611-86953630 None:intergenic 35.0%
CAAAAACAAATTTGAGGGCA+TGG - chr3_2:86953675-86953694 None:intergenic 35.0%
!! AAGTTGTTTCTGGTTGATCT+TGG + chr3_2:86953957-86953976 Msa0434170:CDS 35.0%
!! TTTCTGGTTGATCTTGGATT+AGG + chr3_2:86953963-86953982 Msa0434170:CDS 35.0%
CTGTATATCATATTCTTGGC+AGG + chr3_2:86954197-86954216 Msa0434170:intron 35.0%
GTATATCATATTCTTGGCAG+GGG + chr3_2:86954199-86954218 Msa0434170:intron 35.0%
TCTTGTCTGCAAGAAAAAGA+TGG + chr3_2:86954473-86954492 Msa0434170:CDS 35.0%
ACAAAAGCAACACAAAGCTT+CGG - chr3_2:86954508-86954527 None:intergenic 35.0%
CTACATATTCTACAAACTGC+CGG - chr3_2:86954542-86954561 None:intergenic 35.0%
! ATCCCTTTTTGATGGAATTG+TGG + chr3_2:86954605-86954624 Msa0434170:CDS 35.0%
! TCCCTTTTTGATGGAATTGT+GGG + chr3_2:86954606-86954625 Msa0434170:CDS 35.0%
ACCCACAATTCCATCAAAAA+GGG - chr3_2:86954610-86954629 None:intergenic 35.0%
CACAACACAAACCCATAAAA+GGG - chr3_2:86954744-86954763 None:intergenic 35.0%
TCACAACACAAACCCATAAA+AGG - chr3_2:86954745-86954764 None:intergenic 35.0%
TGTTGTGAAGCTTATATGTC+AGG + chr3_2:86954757-86954776 Msa0434170:intron 35.0%
TGATGAACAACCAAAGAAGA+AGG + chr3_2:86954820-86954839 Msa0434170:CDS 35.0%
! GCTCAAAACCTTTGTTTCAT+TGG - chr3_2:86954899-86954918 None:intergenic 35.0%
!!! GACTTTCTATATTTTGGCGT+AGG + chr3_2:86954966-86954985 Msa0434170:intron 35.0%
CTTTCCCAACACATTGTAAA+AGG + chr3_2:86955016-86955035 Msa0434170:CDS 35.0%
ATGAATCTGTTTCACAGGAA+TGG + chr3_2:86955277-86955296 Msa0434170:intron 35.0%
!! TGTTTCACAGGAATGGATTA+TGG + chr3_2:86955284-86955303 Msa0434170:intron 35.0%
!! AAACGAGTCACTGACTTTAT+AGG - chr3_2:86955544-86955563 None:intergenic 35.0%
AGTGGATCAACAAAAAATGG+AGG + chr3_2:86955571-86955590 Msa0434170:CDS 35.0%
GTGGATCAACAAAAAATGGA+GGG + chr3_2:86955572-86955591 Msa0434170:CDS 35.0%
ATCAACAAAAAATGGAGGGA+AGG + chr3_2:86955576-86955595 Msa0434170:CDS 35.0%
!!! AGGATTTTTTGTCACTGCTA+TGG + chr3_2:86955596-86955615 Msa0434170:CDS 35.0%
TTCGATGAATACCTTCACTA+GGG - chr3_2:86955796-86955815 None:intergenic 35.0%
TGGGAGAACAGTTTCATAAA+TGG + chr3_2:86956081-86956100 Msa0434170:exon 35.0%
GTATGCTACACCTTTCTTTA+TGG + chr3_2:86956242-86956261 Msa0434170:three_prime_UTR 35.0%
! TGCAACTAAAATTTTCCAGC+GGG + chr3_2:86956462-86956481 Msa0434170:three_prime_UTR 35.0%
ATTACGCTATTACAAACTGC+TGG - chr3_2:86956613-86956632 None:intergenic 35.0%
! TTTAGAGATCTGTGATGGGA+GGG - chr3_2:86951215-86951234 None:intergenic 40.0%
GAGAGATTGAAAGAAGAGGA+AGG + chr3_2:86951576-86951595 Msa0434170:CDS 40.0%
GGAAGGAGAGAATAAGAAGA+AGG + chr3_2:86951593-86951612 Msa0434170:CDS 40.0%
AGAGAATAAGAAGAAGGCAG+TGG + chr3_2:86951599-86951618 Msa0434170:CDS 40.0%
ATAAGAAGAAGGCAGTGGTT+AGG + chr3_2:86951604-86951623 Msa0434170:CDS 40.0%
TAAGAAGAAGGCAGTGGTTA+GGG + chr3_2:86951605-86951624 Msa0434170:CDS 40.0%
AGTTGTACTCCCTTCTTCTT+CGG - chr3_2:86951697-86951716 None:intergenic 40.0%
AAAATCACCTTCTCAGGAAG+TGG - chr3_2:86951720-86951739 None:intergenic 40.0%
GGAATCAAAATCACCTTCTC+AGG - chr3_2:86951726-86951745 None:intergenic 40.0%
TCTAGTTGAGTCAGACGTTA+TGG + chr3_2:86951836-86951855 Msa0434170:intron 40.0%
ATTAGATAGGAAGCTTGGGA+AGG + chr3_2:86951970-86951989 Msa0434170:CDS 40.0%
TTAGATAGGAAGCTTGGGAA+GGG + chr3_2:86951971-86951990 Msa0434170:CDS 40.0%
AAACACCGTACATACCTCAA+CGG - chr3_2:86952047-86952066 None:intergenic 40.0%
GTTGCTTCGGCACAAAATAA+CGG - chr3_2:86952202-86952221 None:intergenic 40.0%
!! GTTATTTTGTGCCGAAGCAA+CGG + chr3_2:86952201-86952220 Msa0434170:intron 40.0%
!! TTATTTTGTGCCGAAGCAAC+GGG + chr3_2:86952202-86952221 Msa0434170:intron 40.0%
CATATCTATTCCCGTTGCTT+CGG - chr3_2:86952215-86952234 None:intergenic 40.0%
! AACAGCAAAGGGTGCAATTA+CGG + chr3_2:86952353-86952372 Msa0434170:CDS 40.0%
TTGTAAACCTGCCATTCATG+TGG - chr3_2:86952383-86952402 None:intergenic 40.0%
TGTTCCACGAGTACATTACA+AGG + chr3_2:86952523-86952542 Msa0434170:CDS 40.0%
GTTCCACGAGTACATTACAA+GGG + chr3_2:86952524-86952543 Msa0434170:CDS 40.0%
GCAAGGTGACTACTACATTA+TGG + chr3_2:86952550-86952569 Msa0434170:CDS 40.0%
!! ATATGCTTGGCTCTAGTCTA+TGG + chr3_2:86952661-86952680 Msa0434170:CDS 40.0%
!! TATGCTTGGCTCTAGTCTAT+GGG + chr3_2:86952662-86952681 Msa0434170:CDS 40.0%
TAGGATGTCTACTGAAATGG+TGG + chr3_2:86952810-86952829 Msa0434170:intron 40.0%
ATAAATGTTGCTCAACCTCG+GGG - chr3_2:86953095-86953114 None:intergenic 40.0%
! AATTAAGTGTTGTGGAGGAG+AGG + chr3_2:86953212-86953231 Msa0434170:intron 40.0%
! AGAGGTTTCTTGTTATCCAG+AGG + chr3_2:86953230-86953249 Msa0434170:intron 40.0%
! GAGGTTTCTTGTTATCCAGA+GGG + chr3_2:86953231-86953250 Msa0434170:intron 40.0%
! AGGTTTCTTGTTATCCAGAG+GGG + chr3_2:86953232-86953251 Msa0434170:intron 40.0%
! TCTTTTTATCCAGTAGGGTG+AGG + chr3_2:86953262-86953281 Msa0434170:intron 40.0%
! ACTTTTCATGAGCACATCTC+AGG - chr3_2:86953426-86953445 None:intergenic 40.0%
CTGTGATTATGATAGGGACT+TGG + chr3_2:86953509-86953528 Msa0434170:intron 40.0%
TGATAGGGACTTGGGTATTA+TGG + chr3_2:86953518-86953537 Msa0434170:intron 40.0%
GATAGGGACTTGGGTATTAT+GGG + chr3_2:86953519-86953538 Msa0434170:intron 40.0%
CACGCCATACTACTTGATTT+GGG - chr3_2:86953555-86953574 None:intergenic 40.0%
ACACGCCATACTACTTGATT+TGG - chr3_2:86953556-86953575 None:intergenic 40.0%
AATCAAGTAGTATGGCGTGT+TGG + chr3_2:86953556-86953575 Msa0434170:intron 40.0%
ATCAAGTAGTATGGCGTGTT+GGG + chr3_2:86953557-86953576 Msa0434170:intron 40.0%
CTAAAAGCTAGCTATCAAGG+AGG - chr3_2:86953608-86953627 None:intergenic 40.0%
!!! CTCCTTGATAGCTAGCTTTT+AGG + chr3_2:86953606-86953625 Msa0434170:intron 40.0%
ATATCTGCAACAACAACAGC+AGG - chr3_2:86953874-86953893 None:intergenic 40.0%
TGTTGTTGCAGATATGTGCA+TGG + chr3_2:86953879-86953898 Msa0434170:intron 40.0%
AAGCCTGAAAACTTCTTGCT+TGG + chr3_2:86953909-86953928 Msa0434170:CDS 40.0%
!! GAAAGCATCAAAGGGTAACA+TGG - chr3_2:86954001-86954020 None:intergenic 40.0%
! TTTTCTACACAGCAACTCGT+TGG + chr3_2:86954052-86954071 Msa0434170:intron 40.0%
ATCAACGCCCAGATGTATTT+AGG + chr3_2:86954109-86954128 Msa0434170:CDS 40.0%
ATCTTGGTAGAACAAGTAGC+AGG + chr3_2:86954251-86954270 Msa0434170:CDS 40.0%
ATAACCTGATATCCTTGCCA+AGG - chr3_2:86954334-86954353 None:intergenic 40.0%
CAAAAGCAACACAAAGCTTC+GGG - chr3_2:86954507-86954526 None:intergenic 40.0%
TATTCTACAAACTGCCGGAA+AGG - chr3_2:86954537-86954556 None:intergenic 40.0%
GACCCACAATTCCATCAAAA+AGG - chr3_2:86954611-86954630 None:intergenic 40.0%
GTGAAGCTTATATGTCAGGT+TGG + chr3_2:86954761-86954780 Msa0434170:intron 40.0%
TTCATCATCATCCTCTTCCA+TGG - chr3_2:86954807-86954826 None:intergenic 40.0%
CTCGTAGACCAATGAAACAA+AGG + chr3_2:86954888-86954907 Msa0434170:CDS 40.0%
GCGTAGGTATCATTACAATG+TGG + chr3_2:86954982-86955001 Msa0434170:intron 40.0%
TAGTCTTTGGGCACTCATTA+TGG + chr3_2:86955081-86955100 Msa0434170:CDS 40.0%
! CTCTTCCAGTTTTCTTCACA+AGG + chr3_2:86955141-86955160 Msa0434170:CDS 40.0%
! TCCAGTTTTCTTCACAAGGT+TGG + chr3_2:86955145-86955164 Msa0434170:intron 40.0%
ACCAACCTTGTGAAGAAAAC+TGG - chr3_2:86955149-86955168 None:intergenic 40.0%
!! AGGAATGGATTATGGAACAG+TGG + chr3_2:86955292-86955311 Msa0434170:intron 40.0%
!! GGAATGGATTATGGAACAGT+GGG + chr3_2:86955293-86955312 Msa0434170:intron 40.0%
TATTACATCAGTGCCATAGC+TGG + chr3_2:86955324-86955343 Msa0434170:CDS 40.0%
GTGACTCGTTTCCATTTAAG+TGG + chr3_2:86955553-86955572 Msa0434170:CDS 40.0%
TTCTCTCTAAACTCGATGCT+AGG + chr3_2:86955748-86955767 Msa0434170:intron 40.0%
CTTCGATGAATACCTTCACT+AGG - chr3_2:86955797-86955816 None:intergenic 40.0%
!! CTAGTGAAGGTATTCATCGA+AGG + chr3_2:86955795-86955814 Msa0434170:CDS 40.0%
!! TGAAGGTATTCATCGAAGGT+GGG + chr3_2:86955799-86955818 Msa0434170:CDS 40.0%
! CATCAGGTGGTTTTCTTCTT+GGG - chr3_2:86955889-86955908 None:intergenic 40.0%
! TCATCAGGTGGTTTTCTTCT+TGG - chr3_2:86955890-86955909 None:intergenic 40.0%
GTTTCTTGAGTTTCATCAGG+TGG - chr3_2:86955902-86955921 None:intergenic 40.0%
AGCGTTTCTTGAGTTTCATC+AGG - chr3_2:86955905-86955924 None:intergenic 40.0%
TACTAGGAAAATCAGACGTG+CGG - chr3_2:86955928-86955947 None:intergenic 40.0%
! TAAAATTTTCCAGCGGGAAC+TGG + chr3_2:86956468-86956487 Msa0434170:three_prime_UTR 40.0%
! AAAATTTTCCAGCGGGAACT+GGG + chr3_2:86956469-86956488 Msa0434170:three_prime_UTR 40.0%
AAAAGAGCCAAGTACAAGGT+AGG - chr3_2:86956508-86956527 None:intergenic 40.0%
GGATAAAAGAGCCAAGTACA+AGG - chr3_2:86956512-86956531 None:intergenic 40.0%
!! CGGAGTAGCTTTAAATCAAG+AGG - chr3_2:86956538-86956557 None:intergenic 40.0%
! CTTGATTTAAAGCTACTCCG+AGG + chr3_2:86956538-86956557 Msa0434170:three_prime_UTR 40.0%
AAGGCCAAATTCAGACATTG+AGG - chr3_2:86956566-86956585 None:intergenic 40.0%
TCAATGTCTGAATTTGGCCT+TGG + chr3_2:86956565-86956584 Msa0434170:three_prime_UTR 40.0%
! GTTTAGAGATCTGTGATGGG+AGG - chr3_2:86951216-86951235 None:intergenic 45.0%
GGTTTGTGATGAGAGGGAAA+TGG - chr3_2:86951243-86951262 None:intergenic 45.0%
GCGAATCTCTCTCATCTTCA+TGG + chr3_2:86951340-86951359 Msa0434170:five_prime_UTR 45.0%
! AGGCATCGTAAAGATAGCGT+TGG - chr3_2:86951367-86951386 None:intergenic 45.0%
GTGAATAACGACGACGAAAC+AGG + chr3_2:86951549-86951568 Msa0434170:CDS 45.0%
! AGTGGTTAGGGTTTCTAGAG+AGG + chr3_2:86951617-86951636 Msa0434170:CDS 45.0%
! GGTTTCTAGAGAGGAAGCTA+TGG + chr3_2:86951626-86951645 Msa0434170:CDS 45.0%
GCTATGGATGAGTACGATAG+TGG + chr3_2:86951642-86951661 Msa0434170:CDS 45.0%
! ATGGATGAGTACGATAGTGG+TGG + chr3_2:86951645-86951664 Msa0434170:CDS 45.0%
TACAACTCCACTTCCTGAGA+AGG + chr3_2:86951710-86951729 Msa0434170:CDS 45.0%
GGATTTGGGCAAGTCTATGT+TGG + chr3_2:86951995-86952014 Msa0434170:CDS 45.0%
GGTGTTTATGTCTGCCATTG+TGG + chr3_2:86952060-86952079 Msa0434170:intron 45.0%
CGAAGCAACGGGAATAGATA+TGG + chr3_2:86952213-86952232 Msa0434170:intron 45.0%
ATTACGGACCTCCACATGAA+TGG + chr3_2:86952369-86952388 Msa0434170:CDS 45.0%
TAAACCTGCCATTCATGTGG+AGG - chr3_2:86952380-86952399 None:intergenic 45.0%
AGCACATTAGGTGGTAGTCA+TGG + chr3_2:86952500-86952519 Msa0434170:intron 45.0%
CACGAGTACATTACAAGGGA+CGG + chr3_2:86952528-86952547 Msa0434170:CDS 45.0%
GGGGTTTCTATTGTCTCTGA+AGG + chr3_2:86952605-86952624 Msa0434170:intron 45.0%
ACACAGGTCATGGATATGCT+TGG + chr3_2:86952648-86952667 Msa0434170:intron 45.0%
GCTCTAGTCTATGGGATGTT+TGG + chr3_2:86952670-86952689 Msa0434170:CDS 45.0%
GATAACATAAGGCGAGACTC+AGG - chr3_2:86952975-86952994 None:intergenic 45.0%
ATTGAACGTGTTTCCCCATG+AGG - chr3_2:86953020-86953039 None:intergenic 45.0%
AAAAAGAAACCTCACCCCTC+TGG - chr3_2:86953249-86953268 None:intergenic 45.0%
TAAGCTTGACACACTGATCC+TGG - chr3_2:86953303-86953322 None:intergenic 45.0%
CATTAGTTCAGACTGAGAGC+AGG + chr3_2:86953349-86953368 Msa0434170:intron 45.0%
GACAAGTATCTGAGCACTTG+AGG - chr3_2:86953635-86953654 None:intergenic 45.0%
TAATTGACCATTGCAGGCAG+GGG - chr3_2:86953703-86953722 None:intergenic 45.0%
CTAATTGACCATTGCAGGCA+GGG - chr3_2:86953704-86953723 None:intergenic 45.0%
ACTAATTGACCATTGCAGGC+AGG - chr3_2:86953705-86953724 None:intergenic 45.0%
! GGTCCAAGCAAGAAGTTTTC+AGG - chr3_2:86953915-86953934 None:intergenic 45.0%
AAACTTCTTGCTTGGACCCT+CGG + chr3_2:86953917-86953936 Msa0434170:CDS 45.0%
AAGTAGCAGGAGAGATGACT+TGG + chr3_2:86954264-86954283 Msa0434170:CDS 45.0%
GAAGACAAGCGTGTAAGCAA+GGG - chr3_2:86954293-86954312 None:intergenic 45.0%
TTGTCTTCCTTCTTCGTGGT+CGG + chr3_2:86954305-86954324 Msa0434170:CDS 45.0%
GTTACCTTGGCAAGGATATC+AGG + chr3_2:86954327-86954346 Msa0434170:CDS 45.0%
TGGGTCCAAATCCTGACATT+AGG + chr3_2:86954625-86954644 Msa0434170:CDS 45.0%
GTATTTAGGGGCCTAATGTC+AGG - chr3_2:86954639-86954658 None:intergenic 45.0%
ATTAGGCCCCTAAATACCGA+GGG + chr3_2:86954642-86954661 Msa0434170:CDS 45.0%
!! TGTCAGGTTGGACAAAAGAG+AGG + chr3_2:86954773-86954792 Msa0434170:intron 45.0%
AAAGAGAGGACGATTGACCA+TGG + chr3_2:86954787-86954806 Msa0434170:CDS 45.0%
ACCAAAGAAGAAGGTCCGAA+TGG + chr3_2:86954829-86954848 Msa0434170:CDS 45.0%
CCAAAGAAGAAGGTCCGAAT+GGG + chr3_2:86954830-86954849 Msa0434170:CDS 45.0%
ACACTAATCCACTGTGTTGC+TGG - chr3_2:86954860-86954879 None:intergenic 45.0%
ATTACAATGTGGCCGATGAG+CGG + chr3_2:86954993-86955012 Msa0434170:CDS 45.0%
!! TGGCTTCTTGTGCTAGTCTT+TGG + chr3_2:86955068-86955087 Msa0434170:CDS 45.0%
!! GGCTTCTTGTGCTAGTCTTT+GGG + chr3_2:86955069-86955088 Msa0434170:CDS 45.0%
TGTGATCTGCTGTTCCTTAC+AGG + chr3_2:86955498-86955517 Msa0434170:intron 45.0%
GTGATCTGCTGTTCCTTACA+GGG + chr3_2:86955499-86955518 Msa0434170:intron 45.0%
CTAAACTCGATGCTAGGTTG+TGG + chr3_2:86955754-86955773 Msa0434170:intron 45.0%
GATTTCCTGTACCCTAGTGA+AGG + chr3_2:86955782-86955801 Msa0434170:CDS 45.0%
GAATACCTTCACTAGGGTAC+AGG - chr3_2:86955790-86955809 None:intergenic 45.0%
!! GTGAAGGTATTCATCGAAGG+TGG + chr3_2:86955798-86955817 Msa0434170:CDS 45.0%
TTGCAGCAGTTGCAGTAATG+CGG - chr3_2:86955835-86955854 None:intergenic 45.0%
! GCAAGCGGGAATTTTGCAAT+AGG - chr3_2:86956144-86956163 None:intergenic 45.0%
AACTCAGATGTGTAGGCAAG+CGG - chr3_2:86956159-86956178 None:intergenic 45.0%
CTTGCCTACACATCTGAGTT+GGG + chr3_2:86956159-86956178 Msa0434170:three_prime_UTR 45.0%
AGTTCCCAACTCAGATGTGT+AGG - chr3_2:86956166-86956185 None:intergenic 45.0%
GTAGAATGCAGTTTCCGCAT+TGG + chr3_2:86956211-86956230 Msa0434170:three_prime_UTR 45.0%
AAGTAGGCCTACCTTGTACT+TGG + chr3_2:86956498-86956517 Msa0434170:three_prime_UTR 45.0%
ATTCAGACATTGAGGAGCCT+CGG - chr3_2:86956558-86956577 None:intergenic 45.0%
GGCTCCTCAATGTCTGAATT+TGG + chr3_2:86956559-86956578 Msa0434170:three_prime_UTR 45.0%
!! TTATATTTATTATTTATACA+TGG + chr3_2:86952909-86952928 Msa0434170:intron 5.0%
!! TATATTTATTATTTATACAT+GGG + chr3_2:86952910-86952929 Msa0434170:intron 5.0%
TGAGACGGTTTATGCGAGGT+CGG - chr3_2:86951401-86951420 None:intergenic 50.0%
TCAGTGAGACGGTTTATGCG+AGG - chr3_2:86951405-86951424 None:intergenic 50.0%
AAGCTTGGGAAGGGAGGATT+TGG + chr3_2:86951980-86951999 Msa0434170:CDS 50.0%
AGCTTGGGAAGGGAGGATTT+GGG + chr3_2:86951981-86952000 Msa0434170:CDS 50.0%
!! TGGTGCCGTTGAGGTATGTA+CGG + chr3_2:86952039-86952058 Msa0434170:intron 50.0%
! TCAATCACGGAGCACCACAA+TGG - chr3_2:86952077-86952096 None:intergenic 50.0%
CGTCCCTTGTAATGTACTCG+TGG - chr3_2:86952530-86952549 None:intergenic 50.0%
GTACATTACAAGGGACGGCA+AGG + chr3_2:86952533-86952552 Msa0434170:CDS 50.0%
GGTGGCATGTATTGCAATCG+AGG + chr3_2:86952828-86952847 Msa0434170:CDS 50.0%
! GAGGGTGAGACTCATTTTCC+TGG + chr3_2:86952881-86952900 Msa0434170:intron 50.0%
! TCTTGTTATCCAGAGGGGTG+AGG + chr3_2:86953237-86953256 Msa0434170:intron 50.0%
TAGGGTGAGGTCCATGCTAA+GGG + chr3_2:86953275-86953294 Msa0434170:intron 50.0%
TGATCCTGGTACCCTTAGCA+TGG - chr3_2:86953289-86953308 None:intergenic 50.0%
! AACCCAAGTTCCACTTGCTG+TGG + chr3_2:86953376-86953395 Msa0434170:intron 50.0%
!! TTCCACTTGCTGTGGCCTAT+GGG + chr3_2:86953384-86953403 Msa0434170:intron 50.0%
AACTTCTTGCTTGGACCCTC+GGG + chr3_2:86953918-86953937 Msa0434170:CDS 50.0%
CGTTGGCGTGATAGTTCAAC+TGG + chr3_2:86954069-86954088 Msa0434170:CDS 50.0%
GCTAGTGTGCATGCACATCT+TGG + chr3_2:86954235-86954254 Msa0434170:CDS 50.0%
GGAAGACAAGCGTGTAAGCA+AGG - chr3_2:86954294-86954313 None:intergenic 50.0%
ACGCTTGTCTTCCTTCTTCG+TGG + chr3_2:86954301-86954320 Msa0434170:CDS 50.0%
AAGGTAACCGACCACGAAGA+AGG - chr3_2:86954315-86954334 None:intergenic 50.0%
TTCTTCGTGGTCGGTTACCT+TGG + chr3_2:86954314-86954333 Msa0434170:CDS 50.0%
ACACAAAGCTTCGGGTGAAG+TGG - chr3_2:86954499-86954518 None:intergenic 50.0%
! GCTTTTGTCCTGCACCTTTC+CGG + chr3_2:86954520-86954539 Msa0434170:CDS 50.0%
AGGGGCCTAATGTCAGGATT+TGG - chr3_2:86954633-86954652 None:intergenic 50.0%
CATTAGGCCCCTAAATACCG+AGG + chr3_2:86954641-86954660 Msa0434170:CDS 50.0%
TGAGCACCCTCGGTATTTAG+GGG - chr3_2:86954651-86954670 None:intergenic 50.0%
CTGAGCACCCTCGGTATTTA+GGG - chr3_2:86954652-86954671 None:intergenic 50.0%
TCTGAGCACCCTCGGTATTT+AGG - chr3_2:86954653-86954672 None:intergenic 50.0%
!! AAATACCGAGGGTGCTCAGA+AGG + chr3_2:86954653-86954672 Msa0434170:CDS 50.0%
AAGTACCTTCTGAGCACCCT+CGG - chr3_2:86954661-86954680 None:intergenic 50.0%
AGGACGATTGACCATGGAAG+AGG + chr3_2:86954793-86954812 Msa0434170:CDS 50.0%
CCCATTCGGACCTTCTTCTT+TGG - chr3_2:86954833-86954852 None:intergenic 50.0%
TGGGCACTCATTATGGATGC+TGG + chr3_2:86955088-86955107 Msa0434170:CDS 50.0%
CTCATTATGGATGCTGGCAC+TGG + chr3_2:86955094-86955113 Msa0434170:CDS 50.0%
GCCATAGCTGGAGCTAGTAA+CGG + chr3_2:86955336-86955355 Msa0434170:CDS 50.0%
CCATAGCTGGAGCTAGTAAC+GGG + chr3_2:86955337-86955356 Msa0434170:CDS 50.0%
!! AGCTAGTAACGGGTCCTCAT+TGG + chr3_2:86955347-86955366 Msa0434170:CDS 50.0%
GCATGTATTGGGTCCCTGTA+AGG - chr3_2:86955515-86955534 None:intergenic 50.0%
TGGGCAATTGTTATGTCCCG+TGG + chr3_2:86955636-86955655 Msa0434170:CDS 50.0%
ATTGTTATGTCCCGTGGTGC+TGG + chr3_2:86955642-86955661 Msa0434170:CDS 50.0%
CTCTGTAAATCCAGCACCAC+GGG - chr3_2:86955655-86955674 None:intergenic 50.0%
GCTCTGTAAATCCAGCACCA+CGG - chr3_2:86955656-86955675 None:intergenic 50.0%
! TGGTGCTGGATTTACAGAGC+AGG + chr3_2:86955656-86955675 Msa0434170:CDS 50.0%
ACTCAGATGTGTAGGCAAGC+GGG - chr3_2:86956158-86956177 None:intergenic 50.0%
GCTTGCCTACACATCTGAGT+TGG + chr3_2:86956158-86956177 Msa0434170:three_prime_UTR 50.0%
GCATACTGCAAGCACCAATG+CGG - chr3_2:86956228-86956247 None:intergenic 50.0%
! GGGAACTGGGTGCTATAAGT+AGG + chr3_2:86956482-86956501 Msa0434170:three_prime_UTR 50.0%
GAGACGGTTTATGCGAGGTC+GGG - chr3_2:86951400-86951419 None:intergenic 55.0%
ATTCCTTCTGGTCTGTGCGG+CGG - chr3_2:86951472-86951491 None:intergenic 55.0%
CCGATTCCTTCTGGTCTGTG+CGG - chr3_2:86951475-86951494 None:intergenic 55.0%
CCGCACAGACCAGAAGGAAT+CGG + chr3_2:86951472-86951491 Msa0434170:CDS 55.0%
CACAGACCAGAAGGAATCGG+AGG + chr3_2:86951475-86951494 Msa0434170:CDS 55.0%
CTTCTGCCTCCGATTCCTTC+TGG - chr3_2:86951484-86951503 None:intergenic 55.0%
! CCGGAGCTTTATCGGCACTA+CGG - chr3_2:86951671-86951690 None:intergenic 55.0%
!! CCGTAGTGCCGATAAAGCTC+CGG + chr3_2:86951668-86951687 Msa0434170:CDS 55.0%
!! CGTAGTGCCGATAAAGCTCC+GGG + chr3_2:86951669-86951688 Msa0434170:CDS 55.0%
! TTCGGCTCCCGGAGCTTTAT+CGG - chr3_2:86951679-86951698 None:intergenic 55.0%
GATAGGAAGCTTGGGAAGGG+AGG + chr3_2:86951974-86951993 Msa0434170:CDS 55.0%
! GAGTGGAGCTGCTTTGCTGA+AGG + chr3_2:86952432-86952451 Msa0434170:intron 55.0%
TAGCATGGACCTCACCCTAC+TGG - chr3_2:86953274-86953293 None:intergenic 55.0%
GTAGGGTGAGGTCCATGCTA+AGG + chr3_2:86953274-86953293 Msa0434170:intron 55.0%
!! AGGTCCATGCTAAGGGTACC+AGG + chr3_2:86953282-86953301 Msa0434170:intron 55.0%
GGCCACAGCAAGTGGAACTT+GGG - chr3_2:86953381-86953400 None:intergenic 55.0%
AGGCCACAGCAAGTGGAACT+TGG - chr3_2:86953382-86953401 None:intergenic 55.0%
!! GTTCCACTTGCTGTGGCCTA+TGG + chr3_2:86953383-86953402 Msa0434170:intron 55.0%
!! TCCACTTGCTGTGGCCTATG+GGG + chr3_2:86953385-86953404 Msa0434170:intron 55.0%
GCCTATGGGGTGAACCTGTT+TGG + chr3_2:86953398-86953417 Msa0434170:intron 55.0%
GCCAAACAGGTTCACCCCAT+AGG - chr3_2:86953402-86953421 None:intergenic 55.0%
GCACATCTCAGGTGCCAAAC+AGG - chr3_2:86953415-86953434 None:intergenic 55.0%
TGTTCTTCCCCTGCCTGCAA+TGG + chr3_2:86953693-86953712 Msa0434170:intron 55.0%
TTCTCATCAGGGGTTCCCGA+GGG - chr3_2:86953936-86953955 None:intergenic 55.0%
TTTCTCATCAGGGGTTCCCG+AGG - chr3_2:86953937-86953956 None:intergenic 55.0%
! ACAAACTGCCGGAAAGGTGC+AGG - chr3_2:86954531-86954550 None:intergenic 55.0%
!! GAGGGTGCTCAGAAGGTACT+TGG + chr3_2:86954660-86954679 Msa0434170:intron 55.0%
! GTGTTGCTGGCTGACCCATT+CGG - chr3_2:86954847-86954866 None:intergenic 55.0%
GTGTTGGGAAAGCCGCTCAT+CGG - chr3_2:86955008-86955027 None:intergenic 55.0%
CCCGTTACTAGCTCCAGCTA+TGG - chr3_2:86955340-86955359 None:intergenic 55.0%
TTATAGCACCCAGTTCCCGC+TGG - chr3_2:86956480-86956499 None:intergenic 55.0%
GCGGCGCGTTATCAGTGAGA+CGG - chr3_2:86951416-86951435 None:intergenic 60.0%
! TCTCACTGATAACGCGCCGC+CGG + chr3_2:86951416-86951435 Msa0434170:CDS 60.0%
CTCCGGGAGCCGAAGAAGAA+GGG + chr3_2:86951685-86951704 Msa0434170:CDS 60.0%
CTCCCTTCTTCTTCGGCTCC+CGG - chr3_2:86951690-86951709 None:intergenic 60.0%
GTCTATGTTGGCCGACGCGT+AGG + chr3_2:86952007-86952026 Msa0434170:CDS 60.0%
CAGAACCAGCTCCTACGCGT+CGG - chr3_2:86952021-86952040 None:intergenic 60.0%
!! AGCTGGTTCTGGTGCCGTTG+AGG + chr3_2:86952030-86952049 Msa0434170:CDS 60.0%
CGGACCTCCACATGAATGGC+AGG + chr3_2:86952373-86952392 Msa0434170:CDS 60.0%
TAAGGCGAGACTCAGGCAGC+AGG - chr3_2:86952968-86952987 None:intergenic 60.0%
ACCCCATAGGCCACAGCAAG+TGG - chr3_2:86953389-86953408 None:intergenic 60.0%
CGTGGTCGGTTACCTTGGCA+AGG + chr3_2:86954319-86954338 Msa0434170:CDS 60.0%
TGGGTCAGCCAGCAACACAG+TGG + chr3_2:86954849-86954868 Msa0434170:CDS 60.0%
GTCACTGCTATGGCCACTGC+TGG + chr3_2:86955606-86955625 Msa0434170:CDS 60.0%
TGGCCACTGCTGGCACTAGA+TGG + chr3_2:86955616-86955635 Msa0434170:CDS 60.0%
GGCCACTGCTGGCACTAGAT+GGG + chr3_2:86955617-86955636 Msa0434170:CDS 60.0%
TGCCCATCTAGTGCCAGCAG+TGG - chr3_2:86955622-86955641 None:intergenic 60.0%
CGAGGTCGGGTACGCAACTC+AGG - chr3_2:86951387-86951406 None:intergenic 65.0%
GCTCCGGGAGCCGAAGAAGA+AGG + chr3_2:86951684-86951703 Msa0434170:CDS 65.0%
! CGACGCGTAGGAGCTGGTTC+TGG + chr3_2:86952019-86952038 Msa0434170:CDS 65.0%
CCTTCTGGTCTGTGCGGCGG+TGG - chr3_2:86951469-86951488 None:intergenic 70.0%
CCACCGCCGCACAGACCAGA+AGG + chr3_2:86951466-86951485 Msa0434170:CDS 70.0%
GTTGGCCGACGCGTAGGAGC+TGG + chr3_2:86952013-86952032 Msa0434170:CDS 70.0%
GATAACGCGCCGCCGGTCGC+CGG + chr3_2:86951423-86951442 Msa0434170:CDS 75.0%
AGCGACGGCTCTCCTCCCGC+CGG - chr3_2:86951445-86951464 None:intergenic 75.0%
CTGTGCGGCGGTGGCAGCGA+CGG - chr3_2:86951460-86951479 None:intergenic 75.0%
! GCTCTCCTCCCGCCGGCGAC+CGG - chr3_2:86951438-86951457 None:intergenic 80.0%
! AACGCGCCGCCGGTCGCCGG+CGG + chr3_2:86951426-86951445 Msa0434170:CDS 85.0%
! CTCCTCCCGCCGGCGACCGG+CGG - chr3_2:86951435-86951454 None:intergenic 85.0%
! ACGCGCCGCCGGTCGCCGGC+GGG + chr3_2:86951427-86951446 Msa0434170:CDS 90.0%
! CGCCGCCGGTCGCCGGCGGG+AGG + chr3_2:86951430-86951449 Msa0434170:CDS 95.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86951132 86956718 86951132 ID=Msa0434170;Name=Msa0434170
chr3_2 mRNA 86951132 86956718 86951132 ID=Msa0434170-mRNA-1;Parent=Msa0434170;Name=Msa0434170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=249|0.93|0.93|1|1|1|16|619|682
chr3_2 exon 86951132 86951731 86951132 ID=Msa0434170-mRNA-1:exon:25215;Parent=Msa0434170-mRNA-1
chr3_2 exon 86951941 86952051 86951941 ID=Msa0434170-mRNA-1:exon:25216;Parent=Msa0434170-mRNA-1
chr3_2 exon 86952329 86952402 86952329 ID=Msa0434170-mRNA-1:exon:25217;Parent=Msa0434170-mRNA-1
chr3_2 exon 86952502 86952571 86952502 ID=Msa0434170-mRNA-1:exon:25218;Parent=Msa0434170-mRNA-1
chr3_2 exon 86952654 86952709 86952654 ID=Msa0434170-mRNA-1:exon:25219;Parent=Msa0434170-mRNA-1
chr3_2 exon 86952813 86952884 86952813 ID=Msa0434170-mRNA-1:exon:25220;Parent=Msa0434170-mRNA-1
chr3_2 exon 86953890 86953984 86953890 ID=Msa0434170-mRNA-1:exon:25221;Parent=Msa0434170-mRNA-1
chr3_2 exon 86954064 86954130 86954064 ID=Msa0434170-mRNA-1:exon:25222;Parent=Msa0434170-mRNA-1
chr3_2 exon 86954219 86954348 86954219 ID=Msa0434170-mRNA-1:exon:25223;Parent=Msa0434170-mRNA-1
chr3_2 exon 86954456 86954674 86954456 ID=Msa0434170-mRNA-1:exon:25224;Parent=Msa0434170-mRNA-1
chr3_2 exon 86954779 86954909 86954779 ID=Msa0434170-mRNA-1:exon:25225;Parent=Msa0434170-mRNA-1
chr3_2 exon 86954988 86955162 86954988 ID=Msa0434170-mRNA-1:exon:25226;Parent=Msa0434170-mRNA-1
chr3_2 exon 86955294 86955384 86955294 ID=Msa0434170-mRNA-1:exon:25227;Parent=Msa0434170-mRNA-1
chr3_2 exon 86955520 86955677 86955520 ID=Msa0434170-mRNA-1:exon:25228;Parent=Msa0434170-mRNA-1
chr3_2 exon 86955770 86955958 86955770 ID=Msa0434170-mRNA-1:exon:25229;Parent=Msa0434170-mRNA-1
chr3_2 exon 86956040 86956718 86956040 ID=Msa0434170-mRNA-1:exon:25230;Parent=Msa0434170-mRNA-1
chr3_2 five_prime_UTR 86951132 86951380 86951132 ID=Msa0434170-mRNA-1:five_prime_utr;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86951381 86951731 86951381 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86951941 86952051 86951941 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86952329 86952402 86952329 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86952502 86952571 86952502 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86952654 86952709 86952654 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86952813 86952884 86952813 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86953890 86953984 86953890 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86954064 86954130 86954064 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86954219 86954348 86954219 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86954456 86954674 86954456 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86954779 86954909 86954779 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86954988 86955162 86954988 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86955294 86955384 86955294 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86955520 86955677 86955520 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86955770 86955958 86955770 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 CDS 86956040 86956099 86956040 ID=Msa0434170-mRNA-1:cds;Parent=Msa0434170-mRNA-1
chr3_2 three_prime_UTR 86956100 86956718 86956100 ID=Msa0434170-mRNA-1:three_prime_utr;Parent=Msa0434170-mRNA-1
Gene Sequence

>Msa0434170

ATGCCTGAGTTGCGTACCCGACCTCGCATAAACCGTCTCACTGATAACGCGCCGCCGGTCGCCGGCGGGAGGAGAGCCGTCGCTGCCACCGCCGCACAGACCAGAAGGAATCGGAGGCAGAAGAAGAAGAAGAAGAACACGATCGTTGCCGAGAAAATCGAAAACATTGTGAATAACGACGACGAAACAGGAGTAGAGAGATTGAAAGAAGAGGAAGGAGAGAATAAGAAGAAGGCAGTGGTTAGGGTTTCTAGAGAGGAAGCTATGGATGAGTACGATAGTGGTGGCCGTAGTGCCGATAAAGCTCCGGGAGCCGAAGAAGAAGGGAGTACAACTCCACTTCCTGAGAAGATTCAAGTTGGTGGTTCTCCATTATATAGATTAGATAGGAAGCTTGGGAAGGGAGGATTTGGGCAAGTCTATGTTGGCCGACGCGTAGGAGCTGGTTCTGGTGCCGTTGAGGTAGCATTAAAATTTGAGCATAGAAACAGCAAAGGGTGCAATTACGGACCTCCACATGAATGGCAGGTTTACAACACATTAGGTGGTAGTCATGGTGTTCCACGAGTACATTACAAGGGACGGCAAGGTGACTACTACATTATGGTCATGGATATGCTTGGCTCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCTACTGAAATGGTGGCATGTATTGCAATCGAGGCTATCTCTATATTAGAGAAGATGCATTGTAGAGGATATGTGCATGGTGATGTAAAGCCTGAAAACTTCTTGCTTGGACCCTCGGGAACCCCTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGTTGGCGTGATAGTTCAACTGGCCTTCATGTTGATTATGATCAACGCCCAGATGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCACATCTTGGTAGAACAAGTAGCAGGAGAGATGACTTGGAATCCCTTGCTTACACGCTTGTCTTCCTTCTTCGTGGTCGGTTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCACCCGAAGCTTTGTGTTGCTTTTGTCCTGCACCTTTCCGGCAGTTTGTAGAATATGTAGTAAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATACATATCCCTTTTTGATGGAATTGTGGGTCCAAATCCTGACATTAGGCCCCTAAATACCGAGGGTGCTCAGAAGGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCCGAATGGGTCAGCCAGCAACACAGTGGATTAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGGTATCATTACAATGTGGCCGATGAGCGGCTTTCCCAACACATTGTAAAAGGAAATGAAGATGGTTTATTTATTAGCAGTGTGGCTTCTTGTGCTAGTCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACATCACAAGTTTACGAACTCTCTTCCAGTTTTCTTCACAAGGAATGGATTATGGAACAGTGGGATAAGAATTATTACATCAGTGCCATAGCTGGAGCTAGTAACGGGTCCTCATTGGTTGTAATGTCAAAAGGGACCCAATACATGCAACAATCCTATAAAGTCAGTGACTCGTTTCCATTTAAGTGGATCAACAAAAAATGGAGGGAAGGATTTTTTGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTACAGAGCAGGTTGTGGAACTTGATTTCCTGTACCCTAGTGAAGGTATTCATCGAAGGTGGGAAAACAATTACCGCATTACTGCAACTGCTGCAACGCCTGATCAAGCTGCTTTTATTTTAAGTGTCCCAAGAAGAAAACCACCTGATGAAACTCAAGAAACGCTCCGCACGTCTGATTTTCCTAGTACTCATGTTAAGGAAAAATGGGCAAAGAACCTCTATATCGCATCTATTAGTTATGGGAGAACAGTTTCATAA
Protein sequence

>Msa0434170

MPELRTRPRINRLTDNAPPVAGGRRAVAATAAQTRRNRRQKKKKKNTIVAEKIENIVNNDDETGVERLKEEEGENKKKAVVRVSREEAMDEYDSGGRSADKAPGAEEEGSTTPLPEKIQVGGSPLYRLDRKLGKGGFGQVYVGRRVGAGSGAVEVALKFEHRNSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDMLGSSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHCRGYVHGDVKPENFLLGPSGTPDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCFCPAPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPLNTEGAQKVGQKRGRLTMEEDDDEQPKKKVRMGQPATQWISVYNARRPMKQRYHYNVADERLSQHIVKGNEDGLFISSVASCASLWALIMDAGTGFTSQVYELSSSFLHKEWIMEQWDKNYYISAIAGASNGSSLVVMSKGTQYMQQSYKVSDSFPFKWINKKWREGFFVTAMATAGTRWAIVMSRGAGFTEQVVELDFLYPSEGIHRRWENNYRITATAATPDQAAFILSVPRRKPPDETQETLRTSDFPSTHVKEKWAKNLYIASISYGRTVS*