Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384440 | XP_003603712.1 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 3.30e-137 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384440 | sp|Q99MM4|TRAD1_RAT | 33.333 | 141 | 92 | 2 | 1 | 140 | 1 | 140 | 6.01e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384440 | G7J4M2 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 1.57e-137 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384440 | Msa0522590 | 0.842453 | 2.561830e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384440 | MtrunA17_Chr3g0141211 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 3.03e-141 | 391 |
| Msa0384440 | MtrunA17_Chr5g0427911 | 67.662 | 201 | 56 | 2 | 1 | 192 | 1 | 201 | 7.06e-101 | 289 |
| Msa0384440 | MtrunA17_Chr5g0439731 | 28.846 | 156 | 79 | 4 | 9 | 133 | 411 | 565 | 8.25e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384440 | AT1G09920.1 | 66.667 | 195 | 54 | 2 | 1 | 187 | 1 | 192 | 1.96e-90 | 263 |
| Msa0384440 | AT4G15420.2 | 27.381 | 168 | 90 | 4 | 1 | 137 | 515 | 681 | 1.88e-16 | 77.0 |
| Msa0384440 | AT4G15420.1 | 27.381 | 168 | 90 | 4 | 1 | 137 | 392 | 558 | 4.52e-14 | 70.1 |
Find 57 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATAACCATTGGGTATT+TGG | 0.116991 | 3_1:-87569084 | None:intergenic |
| CCTCTGCTAATGCACATTAC+TGG | 0.270494 | 3_1:-87568944 | None:intergenic |
| ATCGGGAGATTTCGGAATTT+AGG | 0.272052 | 3_1:-87565844 | None:intergenic |
| TAAATACATACGAGATTGTT+TGG | 0.284822 | 3_1:+87569278 | Msa0384440:three_prime_UTR |
| TGATCTTGAGCATGTATCTT+TGG | 0.328151 | 3_1:-87566270 | None:intergenic |
| AATTATTGTAGTTCTGCATT+TGG | 0.328190 | 3_1:+87569134 | Msa0384440:three_prime_UTR |
| ATTAGGTTATCGGGAGATTT+CGG | 0.335194 | 3_1:-87565852 | None:intergenic |
| TTACAAAGGTTACGGGAATT+AGG | 0.337405 | 3_1:-87565869 | None:intergenic |
| TGCTCTGGCAGATCAATTGC+AGG | 0.385813 | 3_1:-87567470 | None:intergenic |
| AAATACATACGAGATTGTTT+GGG | 0.388614 | 3_1:+87569279 | Msa0384440:three_prime_UTR |
| TATTCAACGAACTAATCTTC+AGG | 0.397027 | 3_1:-87565929 | None:intergenic |
| ATGTAAGCTTTGTGGTGATA+TGG | 0.405008 | 3_1:+87566245 | Msa0384440:CDS |
| AATGACTCAAATTTATCTCT+TGG | 0.410237 | 3_1:-87569166 | None:intergenic |
| TGTTTCACTGCACAATGAAC+AGG | 0.411626 | 3_1:-87567363 | None:intergenic |
| CTCTGCTAATGCACATTACT+GGG | 0.415693 | 3_1:-87568943 | None:intergenic |
| AATTGATCTGCCAGAGCATC+AGG | 0.420849 | 3_1:+87567475 | Msa0384440:CDS |
| TTTGAAAGATAAACAGCTAA+TGG | 0.422807 | 3_1:-87569203 | None:intergenic |
| GAGAGTGATTACAAAGGTTA+CGG | 0.428574 | 3_1:-87565877 | None:intergenic |
| TCGTTCGCATCTCTTTCAGC+TGG | 0.432058 | 3_1:-87568832 | None:intergenic |
| ACAATGCTGCAGGGTCTTCA+AGG | 0.432443 | 3_1:+87567696 | Msa0384440:CDS |
| AGAGTGATTACAAAGGTTAC+GGG | 0.457009 | 3_1:-87565876 | None:intergenic |
| GGTTACGGGAATTAGGTTAT+CGG | 0.457038 | 3_1:-87565862 | None:intergenic |
| ACTCACAGGTGACAATCCTC+TGG | 0.461845 | 3_1:-87567430 | None:intergenic |
| GACCACTACACCTGATGCTC+TGG | 0.469028 | 3_1:-87567485 | None:intergenic |
| GAGTGCAAATCAATATTTGC+AGG | 0.472364 | 3_1:-87566195 | None:intergenic |
| GTTACGGGAATTAGGTTATC+GGG | 0.474940 | 3_1:-87565861 | None:intergenic |
| AATACTGCACAATGTCTGTT+GGG | 0.475879 | 3_1:+87569224 | Msa0384440:three_prime_UTR |
| TGCACTCTGTCCATTGCGCT+CGG | 0.478848 | 3_1:+87566211 | Msa0384440:CDS |
| AAATACTGCACAATGTCTGT+TGG | 0.483583 | 3_1:+87569223 | Msa0384440:three_prime_UTR |
| GGCAGATCAATTGCAGGCAA+TGG | 0.486110 | 3_1:-87567464 | None:intergenic |
| TGAATACGAATGAATTATAC+AGG | 0.487152 | 3_1:-87569007 | None:intergenic |
| GCATATGCTAGTGGCTTGAT+CGG | 0.499654 | 3_1:-87565998 | None:intergenic |
| CATATGCTAGTGGCTTGATC+GGG | 0.538378 | 3_1:-87565997 | None:intergenic |
| GGAATACAAGACAATGCTGC+AGG | 0.543487 | 3_1:+87567686 | Msa0384440:CDS |
| ACTGGTATTGCTGTCATACT+CGG | 0.564517 | 3_1:+87568892 | Msa0384440:CDS |
| CTCACAGGTGACAATCCTCT+GGG | 0.566762 | 3_1:-87567429 | None:intergenic |
| CCACTAGCATATGCTCTCAC+TGG | 0.575004 | 3_1:+87566007 | Msa0384440:CDS |
| AATCATGAATTCAATTGCAA+CGG | 0.578333 | 3_1:+87567665 | Msa0384440:CDS |
| CTATTTAAACACCCATGCAC+CGG | 0.581826 | 3_1:+87566293 | Msa0384440:CDS |
| AATTGTGACATACCGGTGCA+TGG | 0.591733 | 3_1:-87566305 | None:intergenic |
| TTCATTGTGCAGTGAAACAA+TGG | 0.598362 | 3_1:+87567367 | Msa0384440:CDS |
| TGCAAATCAATATTTGCAGG+TGG | 0.598379 | 3_1:-87566192 | None:intergenic |
| ATTAAAGAGAGTGATTACAA+AGG | 0.599545 | 3_1:-87565883 | None:intergenic |
| CGGAATTTAGGAATGAAACA+CGG | 0.603093 | 3_1:-87565832 | None:intergenic |
| GTCTGACATATTTGTTACAG+AGG | 0.611676 | 3_1:-87567628 | None:intergenic |
| TGGAAACTCACAGAACTCAC+AGG | 0.615594 | 3_1:-87567444 | None:intergenic |
| TTTCAAGGTTCCGAGCGCAA+TGG | 0.616645 | 3_1:-87566221 | None:intergenic |
| GCAAATCAATATTTGCAGGT+GGG | 0.624728 | 3_1:-87566191 | None:intergenic |
| CCAGTGAGAGCATATGCTAG+TGG | 0.631811 | 3_1:-87566007 | None:intergenic |
| AATGTGCATTAGCAGAGGAG+AGG | 0.637785 | 3_1:+87568949 | Msa0384440:exon |
| GACTCTCACCAAATACCCAA+TGG | 0.641618 | 3_1:+87569076 | Msa0384440:three_prime_UTR |
| ATTGTGACATACCGGTGCAT+GGG | 0.646887 | 3_1:-87566304 | None:intergenic |
| TGAAACACGGAACCAGAACA+CGG | 0.651719 | 3_1:-87565819 | None:intergenic |
| CCAGTAATGTGCATTAGCAG+AGG | 0.653614 | 3_1:+87568944 | Msa0384440:exon |
| CACAGGTGACAATCCTCTGG+GGG | 0.654397 | 3_1:-87567427 | None:intergenic |
| GAATACAAGACAATGCTGCA+GGG | 0.679707 | 3_1:+87567687 | Msa0384440:CDS |
| TCACAGGTGACAATCCTCTG+GGG | 0.714936 | 3_1:-87567428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAACCAATTTTAATAAAA+TGG | + | chr3_1:87566349-87566368 | Msa0384440:intron | 10.0% |
| !!! | TTAACCAATTTTAATAAAAT+GGG | + | chr3_1:87566350-87566369 | Msa0384440:intron | 10.0% |
| !!! | TTTTTCTAATTTTTTATGTT+AGG | - | chr3_1:87567227-87567246 | None:intergenic | 10.0% |
| !! | CATAAAAAATTAGAAAAAAT+TGG | + | chr3_1:87567229-87567248 | Msa0384440:intron | 10.0% |
| !!! | ATTGAAAGTCTTATTTTTTA+TGG | + | chr3_1:87566146-87566165 | Msa0384440:intron | 15.0% |
| !!! | TTTGATCTTTAATAACTTTT+AGG | + | chr3_1:87567574-87567593 | Msa0384440:intron | 15.0% |
| !! | AAAAAAGAAATAGAAGTAAA+TGG | - | chr3_1:87568794-87568813 | None:intergenic | 15.0% |
| !! | ATTCAAAAACAAGTTTGATT+AGG | - | chr3_1:87566105-87566124 | None:intergenic | 20.0% |
| !!! | TTATGGTTTATTTTAGTGAT+CGG | + | chr3_1:87566163-87566182 | Msa0384440:intron | 20.0% |
| !! | GATGGTTTATAATTATAGAT+TGG | - | chr3_1:87566410-87566429 | None:intergenic | 20.0% |
| !! | AAATGAAATAGTAGATTGAT+AGG | + | chr3_1:87566482-87566501 | Msa0384440:intron | 20.0% |
| !! | AATTAAGTATCAATGAAGAT+TGG | + | chr3_1:87566784-87566803 | Msa0384440:intron | 20.0% |
| !!! | TAAGCAACATTTTTTGTAAT+GGG | - | chr3_1:87566895-87566914 | None:intergenic | 20.0% |
| !!! | AATATTTTATATATGCACGA+AGG | + | chr3_1:87567395-87567414 | Msa0384440:CDS | 20.0% |
| !! | ATGCAAATTTCTTAATTCAA+AGG | - | chr3_1:87567519-87567538 | None:intergenic | 20.0% |
| !! | AATAAGCAAATAGAATAGTT+AGG | - | chr3_1:87567791-87567810 | None:intergenic | 20.0% |
| !!! | CTATTTGCTTATTCAAATTT+TGG | + | chr3_1:87567798-87567817 | Msa0384440:intron | 20.0% |
| !!! | AAAAATAATAGACTTCGTTT+TGG | - | chr3_1:87568024-87568043 | None:intergenic | 20.0% |
| !!! | AAACGAAGTCTATTATTTTT+AGG | + | chr3_1:87568024-87568043 | Msa0384440:intron | 20.0% |
| !!! | TCTATTATTTTTAGGTGATT+GGG | + | chr3_1:87568032-87568051 | Msa0384440:intron | 20.0% |
| !!! | GGATTATGAATTTATGATTT+TGG | + | chr3_1:87568602-87568621 | Msa0384440:intron | 20.0% |
| !!! | ATCTATTTTTATTCAGAGAA+AGG | + | chr3_1:87568915-87568934 | Msa0384440:CDS | 20.0% |
| !! | AAAAAAAATGCATAACCATT+GGG | - | chr3_1:87569094-87569113 | None:intergenic | 20.0% |
| !! | TAAAAAAAATGCATAACCAT+TGG | - | chr3_1:87569095-87569114 | None:intergenic | 20.0% |
| ! | ATTAAAGAGAGTGATTACAA+AGG | - | chr3_1:87565886-87565905 | None:intergenic | 25.0% |
| !!! | TATGGTTTATTTTAGTGATC+GGG | + | chr3_1:87566164-87566183 | Msa0384440:intron | 25.0% |
| !! | GAAGCCCATTTTATTAAAAT+TGG | - | chr3_1:87566357-87566376 | None:intergenic | 25.0% |
| ! | AAATAGTAGATTGATAGGAT+GGG | + | chr3_1:87566487-87566506 | Msa0384440:intron | 25.0% |
| !!! | TTTTTAAGCGAAACTTGAAT+AGG | + | chr3_1:87566566-87566585 | Msa0384440:intron | 25.0% |
| !! | GGTTAATTTGAAATGTTCAT+TGG | + | chr3_1:87566594-87566613 | Msa0384440:intron | 25.0% |
| !!! | AGTTTCTTTCTTTAACTTGT+CGG | + | chr3_1:87566816-87566835 | Msa0384440:intron | 25.0% |
| !!! | AAGCAACATTTTTTGTAATG+GGG | - | chr3_1:87566894-87566913 | None:intergenic | 25.0% |
| !!! | CTAAGCAACATTTTTTGTAA+TGG | - | chr3_1:87566896-87566915 | None:intergenic | 25.0% |
| !! | TAGCTTTTGTAATGTTTTCT+TGG | + | chr3_1:87566974-87566993 | Msa0384440:intron | 25.0% |
| ! | GTAATCATGTATGTACTATT+TGG | + | chr3_1:87567046-87567065 | Msa0384440:intron | 25.0% |
| ! | AAGATTCATATCAGTCATAA+AGG | + | chr3_1:87567165-87567184 | Msa0384440:intron | 25.0% |
| ! | AGATTCATATCAGTCATAAA+GGG | + | chr3_1:87567166-87567185 | Msa0384440:intron | 25.0% |
| ! | TCAATAAGTCAAAGATTGTT+AGG | - | chr3_1:87567298-87567317 | None:intergenic | 25.0% |
| !!! | AATAACTTTTAGGAAGTATG+TGG | + | chr3_1:87567584-87567603 | Msa0384440:intron | 25.0% |
| !!! | ATAACTTTTAGGAAGTATGT+GGG | + | chr3_1:87567585-87567604 | Msa0384440:intron | 25.0% |
| ! | AATCATGAATTCAATTGCAA+CGG | + | chr3_1:87567665-87567684 | Msa0384440:CDS | 25.0% |
| !!! | TCACTTAAGTTTGTTATTGT+AGG | + | chr3_1:87567967-87567986 | Msa0384440:intron | 25.0% |
| !!! | GTCTATTATTTTTAGGTGAT+TGG | + | chr3_1:87568031-87568050 | Msa0384440:intron | 25.0% |
| !!! | CTATTATTTTTAGGTGATTG+GGG | + | chr3_1:87568033-87568052 | Msa0384440:intron | 25.0% |
| !!! | GTTTAGCAACTGTTTTTTTA+AGG | + | chr3_1:87568055-87568074 | Msa0384440:intron | 25.0% |
| !!! | AACTGTTTTTTTAAGGTTGT+TGG | + | chr3_1:87568062-87568081 | Msa0384440:intron | 25.0% |
| ! | ACTCATAAATATTAACCAGT+TGG | - | chr3_1:87568146-87568165 | None:intergenic | 25.0% |
| ! | AGGCTTAATGCTAAATAATA+GGG | + | chr3_1:87568238-87568257 | Msa0384440:intron | 25.0% |
| !!! | AACATTTTTAAGCAGATCAA+AGG | - | chr3_1:87568271-87568290 | None:intergenic | 25.0% |
| ! | AACTGGTCATACTATTATTA+TGG | - | chr3_1:87568391-87568410 | None:intergenic | 25.0% |
| ! | GAGTTTAAATTAACAAGTCA+AGG | + | chr3_1:87568535-87568554 | Msa0384440:intron | 25.0% |
| !!! | GTAATCGATTTTCTTTTGTT+AGG | + | chr3_1:87568581-87568600 | Msa0384440:intron | 25.0% |
| !! | CCACAATAGAATAACAATTT+TGG | - | chr3_1:87568631-87568650 | None:intergenic | 25.0% |
| !! | CCAAAATTGTTATTCTATTG+TGG | + | chr3_1:87568628-87568647 | Msa0384440:intron | 25.0% |
| ! | TTAGTGTCATAAATCTTACT+TGG | + | chr3_1:87568687-87568706 | Msa0384440:intron | 25.0% |
| !!! | TCTATTTCTTTTTTCTGTGA+AGG | + | chr3_1:87568800-87568819 | Msa0384440:intron | 25.0% |
| !! | TTTTTCACAATAGCTATAAC+TGG | + | chr3_1:87568874-87568893 | Msa0384440:CDS | 25.0% |
| ! | TGAATACGAATGAATTATAC+AGG | - | chr3_1:87569010-87569029 | None:intergenic | 25.0% |
| !! | AATTATTGTAGTTCTGCATT+TGG | + | chr3_1:87569134-87569153 | Msa0384440:three_prime_UTR | 25.0% |
| ! | AATGACTCAAATTTATCTCT+TGG | - | chr3_1:87569169-87569188 | None:intergenic | 25.0% |
| ! | TTTGAAAGATAAACAGCTAA+TGG | - | chr3_1:87569206-87569225 | None:intergenic | 25.0% |
| TATTCAACGAACTAATCTTC+AGG | - | chr3_1:87565932-87565951 | None:intergenic | 30.0% | |
| ! | TTCGTTGAATAACGTTTTGT+TGG | + | chr3_1:87565941-87565960 | Msa0384440:five_prime_UTR | 30.0% |
| ! | CACAAAGCTTACATTTTTCA+AGG | - | chr3_1:87566239-87566258 | None:intergenic | 30.0% |
| CTTGAAAAATGTAAGCTTTG+TGG | + | chr3_1:87566237-87566256 | Msa0384440:CDS | 30.0% | |
| !!! | TGGGCTTCACAATTTTAATT+AGG | + | chr3_1:87566369-87566388 | Msa0384440:intron | 30.0% |
| GAAATAGTAGATTGATAGGA+TGG | + | chr3_1:87566486-87566505 | Msa0384440:intron | 30.0% | |
| TGTTAATGATGGTAACTGAA+TGG | - | chr3_1:87566633-87566652 | None:intergenic | 30.0% | |
| TTACCATCATTAACATAAGC+CGG | + | chr3_1:87566638-87566657 | Msa0384440:intron | 30.0% | |
| !!! | TTTTTGAAACTCTTGACAGT+TGG | + | chr3_1:87566728-87566747 | Msa0384440:intron | 30.0% |
| ! | CAACACGGATTATATATTGT+CGG | + | chr3_1:87567007-87567026 | Msa0384440:intron | 30.0% |
| ! | ATGTATGTACTATTTGGAAC+AGG | + | chr3_1:87567052-87567071 | Msa0384440:intron | 30.0% |
| ! | TACTATTTGGAACAGGAATT+CGG | + | chr3_1:87567059-87567078 | Msa0384440:intron | 30.0% |
| TGATACAACGAAAATAAGAC+TGG | - | chr3_1:87567126-87567145 | None:intergenic | 30.0% | |
| GATTCATATCAGTCATAAAG+GGG | + | chr3_1:87567167-87567186 | Msa0384440:intron | 30.0% | |
| ATTAGAAAAAATTGGGAGTC+TGG | + | chr3_1:87567237-87567256 | Msa0384440:intron | 30.0% | |
| TAATCTATGTAGTATAACCG+AGG | + | chr3_1:87567539-87567558 | Msa0384440:intron | 30.0% | |
| TCAAACTAAAATTAGTGCCT+CGG | - | chr3_1:87567559-87567578 | None:intergenic | 30.0% | |
| CATGTAATACTTGCACAAAA+TGG | - | chr3_1:87567825-87567844 | None:intergenic | 30.0% | |
| ATTTCAACGTAAGCCTAATA+GGG | - | chr3_1:87567910-87567929 | None:intergenic | 30.0% | |
| !! | ATAATAGACTTCGTTTTGGA+CGG | - | chr3_1:87568020-87568039 | None:intergenic | 30.0% |
| CTTACAAGTACAATCTTTAG+TGG | + | chr3_1:87568215-87568234 | Msa0384440:intron | 30.0% | |
| GAGGCTTAATGCTAAATAAT+AGG | + | chr3_1:87568237-87568256 | Msa0384440:intron | 30.0% | |
| !! | AGTACTGAGGTATATTTTGA+AGG | + | chr3_1:87568431-87568450 | Msa0384440:intron | 30.0% |
| ! | GTATCTTTAGAGGAGTAAAA+TGG | + | chr3_1:87568731-87568750 | Msa0384440:intron | 30.0% |
| AGAAGTAAATGGTTTACTCA+AGG | - | chr3_1:87568783-87568802 | None:intergenic | 30.0% | |
| ! | GAAAAAAAGACGTCTTTTTG+AGG | - | chr3_1:87568860-87568879 | None:intergenic | 30.0% |
| ! | GAACACGGATTTTTGTACTT+AGG | - | chr3_1:87565807-87565826 | None:intergenic | 35.0% |
| AAGTACAAAAATCCGTGTTC+TGG | + | chr3_1:87565807-87565826 | Msa0384440:five_prime_UTR | 35.0% | |
| CGGAATTTAGGAATGAAACA+CGG | - | chr3_1:87565835-87565854 | None:intergenic | 35.0% | |
| ATTAGGTTATCGGGAGATTT+CGG | - | chr3_1:87565855-87565874 | None:intergenic | 35.0% | |
| TTACAAAGGTTACGGGAATT+AGG | - | chr3_1:87565872-87565891 | None:intergenic | 35.0% | |
| AGAGTGATTACAAAGGTTAC+GGG | - | chr3_1:87565879-87565898 | None:intergenic | 35.0% | |
| GAGAGTGATTACAAAGGTTA+CGG | - | chr3_1:87565880-87565899 | None:intergenic | 35.0% | |
| GCAAATCAATATTTGCAGGT+GGG | - | chr3_1:87566194-87566213 | None:intergenic | 35.0% | |
| TGCAAATCAATATTTGCAGG+TGG | - | chr3_1:87566195-87566214 | None:intergenic | 35.0% | |
| GAGTGCAAATCAATATTTGC+AGG | - | chr3_1:87566198-87566217 | None:intergenic | 35.0% | |
| ! | ATGTAAGCTTTGTGGTGATA+TGG | + | chr3_1:87566245-87566264 | Msa0384440:CDS | 35.0% |
| TGATCTTGAGCATGTATCTT+TGG | - | chr3_1:87566273-87566292 | None:intergenic | 35.0% | |
| AGCAAGTAATTGTGACATAC+CGG | - | chr3_1:87566315-87566334 | None:intergenic | 35.0% | |
| CTATTCTATCTCTACGAAAC+TGG | - | chr3_1:87566446-87566465 | None:intergenic | 35.0% | |
| CAGTTTCGTAGAGATAGAAT+AGG | + | chr3_1:87566444-87566463 | Msa0384440:intron | 35.0% | |
| !! | GGTACTTGGGTATTGATATA+GGG | + | chr3_1:87566513-87566532 | Msa0384440:intron | 35.0% |
| !! | TTGGGTATTGATATAGGGAT+GGG | + | chr3_1:87566518-87566537 | Msa0384440:intron | 35.0% |
| GCGAAACTTGAATAGGAAAA+TGG | + | chr3_1:87566573-87566592 | Msa0384440:intron | 35.0% | |
| GCATTATGTTTGGCATCAAA+TGG | + | chr3_1:87566671-87566690 | Msa0384440:intron | 35.0% | |
| ATCTAATCCTTCTAGATGCT+TGG | - | chr3_1:87566700-87566719 | None:intergenic | 35.0% | |
| ! | AATTTTGCTAGCATCACTTC+TGG | + | chr3_1:87566753-87566772 | Msa0384440:intron | 35.0% |
| ! | ATTTTGCTAGCATCACTTCT+GGG | + | chr3_1:87566754-87566773 | Msa0384440:intron | 35.0% |
| !! | TTCTTTCTTTAACTTGTCGG+AGG | + | chr3_1:87566819-87566838 | Msa0384440:intron | 35.0% |
| ! | TGGTTTTCCTGAAATGATTC+TGG | + | chr3_1:87566850-87566869 | Msa0384440:intron | 35.0% |
| ! | GGTTTTCCTGAAATGATTCT+GGG | + | chr3_1:87566851-87566870 | Msa0384440:intron | 35.0% |
| ! | TGTAATGGGGAATTACTAAG+AGG | - | chr3_1:87566881-87566900 | None:intergenic | 35.0% |
| CAATCAGTGCTTCAGTTTAT+AGG | + | chr3_1:87566928-87566947 | Msa0384440:intron | 35.0% | |
| AGTGCTTCAGTTTATAGGTT+TGG | + | chr3_1:87566933-87566952 | Msa0384440:intron | 35.0% | |
| !!! | CTTGGTAGTTTTGTTCAACA+CGG | + | chr3_1:87566992-87567011 | Msa0384440:intron | 35.0% |
| TCGGTGGAAAATTTGTAGTA+AGG | + | chr3_1:87567078-87567097 | Msa0384440:intron | 35.0% | |
| AAAGAAAATGTGAATCGTGC+AGG | + | chr3_1:87567337-87567356 | Msa0384440:intron | 35.0% | |
| TTCATTGTGCAGTGAAACAA+TGG | + | chr3_1:87567367-87567386 | Msa0384440:CDS | 35.0% | |
| ! | GTCTGACATATTTGTTACAG+AGG | - | chr3_1:87567631-87567650 | None:intergenic | 35.0% |
| !! | TGCAAGTTTTAGTCTTTCTG+AGG | + | chr3_1:87567745-87567764 | Msa0384440:intron | 35.0% |
| !! | GCAAGTTTTAGTCTTTCTGA+GGG | + | chr3_1:87567746-87567765 | Msa0384440:intron | 35.0% |
| ! | TTAGTCTTTCTGAGGGTTAA+TGG | + | chr3_1:87567753-87567772 | Msa0384440:intron | 35.0% |
| ! | GCTTTTGTTCCTGTTAGTTA+CGG | + | chr3_1:87567862-87567881 | Msa0384440:intron | 35.0% |
| GTATTAACTCCGTAACTAAC+AGG | - | chr3_1:87567874-87567893 | None:intergenic | 35.0% | |
| CATTTCAACGTAAGCCTAAT+AGG | - | chr3_1:87567911-87567930 | None:intergenic | 35.0% | |
| ! | AGTGAGTGCTTTTCTTTAGA+GGG | - | chr3_1:87567952-87567971 | None:intergenic | 35.0% |
| ! | AAGTGAGTGCTTTTCTTTAG+AGG | - | chr3_1:87567953-87567972 | None:intergenic | 35.0% |
| ACAAGTACAATCTTTAGTGG+AGG | + | chr3_1:87568218-87568237 | Msa0384440:intron | 35.0% | |
| AATCACGAAGTTCACTTATG+TGG | - | chr3_1:87568333-87568352 | None:intergenic | 35.0% | |
| TTATTCTATTGTGGTCTACG+TGG | + | chr3_1:87568637-87568656 | Msa0384440:intron | 35.0% | |
| TATTCTATTGTGGTCTACGT+GGG | + | chr3_1:87568638-87568657 | Msa0384440:intron | 35.0% | |
| GTGTCATAAATCTTACTTGG+AGG | + | chr3_1:87568690-87568709 | Msa0384440:intron | 35.0% | |
| AGATACACTTGACATCAACT+TGG | - | chr3_1:87568717-87568736 | None:intergenic | 35.0% | |
| GATGTCAAGTGTATCTTTAG+AGG | + | chr3_1:87568721-87568740 | Msa0384440:intron | 35.0% | |
| ! | TTTTTCTGTGAAGGAATGAG+AGG | + | chr3_1:87568809-87568828 | Msa0384440:intron | 35.0% |
| ATGCATAACCATTGGGTATT+TGG | - | chr3_1:87569087-87569106 | None:intergenic | 35.0% | |
| AAATACTGCACAATGTCTGT+TGG | + | chr3_1:87569223-87569242 | Msa0384440:three_prime_UTR | 35.0% | |
| AATACTGCACAATGTCTGTT+GGG | + | chr3_1:87569224-87569243 | Msa0384440:three_prime_UTR | 35.0% | |
| ATCGGGAGATTTCGGAATTT+AGG | - | chr3_1:87565847-87565866 | None:intergenic | 40.0% | |
| GTTACGGGAATTAGGTTATC+GGG | - | chr3_1:87565864-87565883 | None:intergenic | 40.0% | |
| GGTTACGGGAATTAGGTTAT+CGG | - | chr3_1:87565865-87565884 | None:intergenic | 40.0% | |
| CTATTTAAACACCCATGCAC+CGG | + | chr3_1:87566293-87566312 | Msa0384440:CDS | 40.0% | |
| AGTAGATTGATAGGATGGGT+TGG | + | chr3_1:87566491-87566510 | Msa0384440:intron | 40.0% | |
| ! | GTAGATTGATAGGATGGGTT+GGG | + | chr3_1:87566492-87566511 | Msa0384440:intron | 40.0% |
| !! | GGGTACTTGGGTATTGATAT+AGG | + | chr3_1:87566512-87566531 | Msa0384440:intron | 40.0% |
| !! | CTTGGGTATTGATATAGGGA+TGG | + | chr3_1:87566517-87566536 | Msa0384440:intron | 40.0% |
| ! | GTATTGATATAGGGATGGGT+GGG | + | chr3_1:87566522-87566541 | Msa0384440:intron | 40.0% |
| CATCCGGCTTATGTTAATGA+TGG | - | chr3_1:87566644-87566663 | None:intergenic | 40.0% | |
| CATCATTAACATAAGCCGGA+TGG | + | chr3_1:87566642-87566661 | Msa0384440:intron | 40.0% | |
| ! | ATGGACCAAGGCATTATGTT+TGG | + | chr3_1:87566661-87566680 | Msa0384440:intron | 40.0% |
| TGATGCCAAACATAATGCCT+TGG | - | chr3_1:87566669-87566688 | None:intergenic | 40.0% | |
| GGATATCCCAGAATCATTTC+AGG | - | chr3_1:87566860-87566879 | None:intergenic | 40.0% | |
| ! | TATTTGGAACAGGAATTCGG+TGG | + | chr3_1:87567062-87567081 | Msa0384440:intron | 40.0% |
| AAATTGGGAGTCTGGTCAAA+TGG | + | chr3_1:87567245-87567264 | Msa0384440:intron | 40.0% | |
| ! | ATAGTTGATTCAGTTCCCCA+GGG | + | chr3_1:87567270-87567289 | Msa0384440:intron | 40.0% |
| TGTTTCACTGCACAATGAAC+AGG | - | chr3_1:87567366-87567385 | None:intergenic | 40.0% | |
| GAATACAAGACAATGCTGCA+GGG | + | chr3_1:87567687-87567706 | Msa0384440:CDS | 40.0% | |
| ! | TCTTTCTGAGGGTTAATGGA+TGG | + | chr3_1:87567757-87567776 | Msa0384440:intron | 40.0% |
| ! | CTTTCTGAGGGTTAATGGAT+GGG | + | chr3_1:87567758-87567777 | Msa0384440:intron | 40.0% |
| ! | TTTCTGAGGGTTAATGGATG+GGG | + | chr3_1:87567759-87567778 | Msa0384440:intron | 40.0% |
| TACGGAGTTAATACTTGCTC+AGG | + | chr3_1:87567880-87567899 | Msa0384440:intron | 40.0% | |
| !! | AGTGCTTTTCTTTAGAGGGA+GGG | - | chr3_1:87567948-87567967 | None:intergenic | 40.0% |
| TTAAGGTTGTTGGAAGCAAC+CGG | + | chr3_1:87568072-87568091 | Msa0384440:intron | 40.0% | |
| ! | TTGTTGTTGTTGGAACCAAC+TGG | + | chr3_1:87568128-87568147 | Msa0384440:intron | 40.0% |
| ! | TTTTCCACCTTTGTGTAGCT+CGG | - | chr3_1:87568310-87568329 | None:intergenic | 40.0% |
| CAGTACTCATCTTACTGCAT+CGG | - | chr3_1:87568418-87568437 | None:intergenic | 40.0% | |
| ! | ATGCAGTAAGATGAGTACTG+AGG | + | chr3_1:87568418-87568437 | Msa0384440:intron | 40.0% |
| CGTGGGATGTAAACATTTAC+TGG | + | chr3_1:87568655-87568674 | Msa0384440:intron | 40.0% | |
| ACTGGTATTGCTGTCATACT+CGG | + | chr3_1:87568892-87568911 | Msa0384440:CDS | 40.0% | |
| CTCTGCTAATGCACATTACT+GGG | - | chr3_1:87568946-87568965 | None:intergenic | 40.0% | |
| TGAAACACGGAACCAGAACA+CGG | - | chr3_1:87565822-87565841 | None:intergenic | 45.0% | |
| CATATGCTAGTGGCTTGATC+GGG | - | chr3_1:87566000-87566019 | None:intergenic | 45.0% | |
| GCATATGCTAGTGGCTTGAT+CGG | - | chr3_1:87566001-87566020 | None:intergenic | 45.0% | |
| ATTGTGACATACCGGTGCAT+GGG | - | chr3_1:87566307-87566326 | None:intergenic | 45.0% | |
| AATTGTGACATACCGGTGCA+TGG | - | chr3_1:87566308-87566327 | None:intergenic | 45.0% | |
| ACTGGATGAGTAGGATTGGA+TGG | - | chr3_1:87566428-87566447 | None:intergenic | 45.0% | |
| CGAAACTGGATGAGTAGGAT+TGG | - | chr3_1:87566432-87566451 | None:intergenic | 45.0% | |
| CTCTACGAAACTGGATGAGT+AGG | - | chr3_1:87566437-87566456 | None:intergenic | 45.0% | |
| !! | ATAGGATGGGTTGGGTACTT+GGG | + | chr3_1:87566500-87566519 | Msa0384440:intron | 45.0% |
| !! | GGTATTGATATAGGGATGGG+TGG | + | chr3_1:87566521-87566540 | Msa0384440:intron | 45.0% |
| ACATAATGCCTTGGTCCATC+CGG | - | chr3_1:87566660-87566679 | None:intergenic | 45.0% | |
| ATGGTGACCAAGCATCTAGA+AGG | + | chr3_1:87566690-87566709 | Msa0384440:intron | 45.0% | |
| CTGGGGAACTGAATCAACTA+TGG | - | chr3_1:87567271-87567290 | None:intergenic | 45.0% | |
| ! | CATAGTTGATTCAGTTCCCC+AGG | + | chr3_1:87567269-87567288 | Msa0384440:intron | 45.0% |
| AAAGATTGTTAGGCACCCTG+GGG | - | chr3_1:87567288-87567307 | None:intergenic | 45.0% | |
| CAAAGATTGTTAGGCACCCT+GGG | - | chr3_1:87567289-87567308 | None:intergenic | 45.0% | |
| TCAAAGATTGTTAGGCACCC+TGG | - | chr3_1:87567290-87567309 | None:intergenic | 45.0% | |
| TGGAAACTCACAGAACTCAC+AGG | - | chr3_1:87567447-87567466 | None:intergenic | 45.0% | |
| ! | AATTGATCTGCCAGAGCATC+AGG | + | chr3_1:87567475-87567494 | Msa0384440:CDS | 45.0% |
| GGAATACAAGACAATGCTGC+AGG | + | chr3_1:87567686-87567705 | Msa0384440:CDS | 45.0% | |
| ! | TTCTGAGGGTTAATGGATGG+GGG | + | chr3_1:87567760-87567779 | Msa0384440:intron | 45.0% |
| GGAGTTAATACTTGCTCAGG+TGG | + | chr3_1:87567883-87567902 | Msa0384440:intron | 45.0% | |
| !! | GAGTGCTTTTCTTTAGAGGG+AGG | - | chr3_1:87567949-87567968 | None:intergenic | 45.0% |
| CTTGTACCACTAAGTGGGAT+CGG | - | chr3_1:87568102-87568121 | None:intergenic | 45.0% | |
| ! | CAAGCCTTGTACCACTAAGT+GGG | - | chr3_1:87568107-87568126 | None:intergenic | 45.0% |
| ! | CAAGGCTTGGTTGTTGTTGT+TGG | + | chr3_1:87568118-87568137 | Msa0384440:intron | 45.0% |
| TTGTAGTCCGAGCTACACAA+AGG | + | chr3_1:87568300-87568319 | Msa0384440:intron | 45.0% | |
| CCTCTGCTAATGCACATTAC+TGG | - | chr3_1:87568947-87568966 | None:intergenic | 45.0% | |
| CCAGTAATGTGCATTAGCAG+AGG | + | chr3_1:87568944-87568963 | Msa0384440:exon | 45.0% | |
| AATGTGCATTAGCAGAGGAG+AGG | + | chr3_1:87568949-87568968 | Msa0384440:exon | 45.0% | |
| GACTCTCACCAAATACCCAA+TGG | + | chr3_1:87569076-87569095 | Msa0384440:three_prime_UTR | 45.0% | |
| !! | ATAAAAAATTAGAAAAAATT+GGG | + | chr3_1:87567230-87567249 | Msa0384440:intron | 5.0% |
| ! | CCAGTGAGAGCATATGCTAG+TGG | - | chr3_1:87566010-87566029 | None:intergenic | 50.0% |
| CCACTAGCATATGCTCTCAC+TGG | + | chr3_1:87566007-87566026 | Msa0384440:CDS | 50.0% | |
| TTTCAAGGTTCCGAGCGCAA+TGG | - | chr3_1:87566224-87566243 | None:intergenic | 50.0% | |
| !! | GATAGGATGGGTTGGGTACT+TGG | + | chr3_1:87566499-87566518 | Msa0384440:intron | 50.0% |
| !! | TAGGGATGGGTGGGTTAGTT+CGG | + | chr3_1:87566531-87566550 | Msa0384440:intron | 50.0% |
| AACATAAGCCGGATGGACCA+AGG | + | chr3_1:87566649-87566668 | Msa0384440:intron | 50.0% | |
| ! | ACTTGTCGGAGGTCTGAAAC+TGG | + | chr3_1:87566830-87566849 | Msa0384440:intron | 50.0% |
| TCACAGGTGACAATCCTCTG+GGG | - | chr3_1:87567431-87567450 | None:intergenic | 50.0% | |
| CTCACAGGTGACAATCCTCT+GGG | - | chr3_1:87567432-87567451 | None:intergenic | 50.0% | |
| ACTCACAGGTGACAATCCTC+TGG | - | chr3_1:87567433-87567452 | None:intergenic | 50.0% | |
| GGCAGATCAATTGCAGGCAA+TGG | - | chr3_1:87567467-87567486 | None:intergenic | 50.0% | |
| TGCTCTGGCAGATCAATTGC+AGG | - | chr3_1:87567473-87567492 | None:intergenic | 50.0% | |
| ACAATGCTGCAGGGTCTTCA+AGG | + | chr3_1:87567696-87567715 | Msa0384440:CDS | 50.0% | |
| TTGCTCAGGTGGTCCCTATT+AGG | + | chr3_1:87567894-87567913 | Msa0384440:intron | 50.0% | |
| CGATCCCACTTAGTGGTACA+AGG | + | chr3_1:87568100-87568119 | Msa0384440:intron | 50.0% | |
| ! | CCAAGCCTTGTACCACTAAG+TGG | - | chr3_1:87568108-87568127 | None:intergenic | 50.0% |
| CCACTTAGTGGTACAAGGCT+TGG | + | chr3_1:87568105-87568124 | Msa0384440:intron | 50.0% | |
| TAGTCCGAGCTACACAAAGG+TGG | + | chr3_1:87568303-87568322 | Msa0384440:intron | 50.0% | |
| !! | CTTACTGCATCGGCTGTAAC+TGG | - | chr3_1:87568408-87568427 | None:intergenic | 50.0% |
| TCGTTCGCATCTCTTTCAGC+TGG | - | chr3_1:87568835-87568854 | None:intergenic | 50.0% | |
| TGCACTCTGTCCATTGCGCT+CGG | + | chr3_1:87566211-87566230 | Msa0384440:CDS | 55.0% | |
| AAGGTGAAAGTTGCCCCCAG+AGG | + | chr3_1:87567414-87567433 | Msa0384440:CDS | 55.0% | |
| CACAGGTGACAATCCTCTGG+GGG | - | chr3_1:87567430-87567449 | None:intergenic | 55.0% | |
| ! | TGCCAGAGCATCAGGTGTAG+TGG | + | chr3_1:87567483-87567502 | Msa0384440:intron | 55.0% |
| GACCACTACACCTGATGCTC+TGG | - | chr3_1:87567488-87567507 | None:intergenic | 55.0% | |
| TGCTGCAGGGTCTTCAAGGT+AGG | + | chr3_1:87567700-87567719 | Msa0384440:intron | 55.0% | |
| ACTAAGTGGGATCGGCTGAC+CGG | - | chr3_1:87568094-87568113 | None:intergenic | 55.0% | |
| GGTCAGCCGATCCCACTTAG+TGG | + | chr3_1:87568093-87568112 | Msa0384440:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 87565765 | 87569298 | 87565765 | ID=Msa0384440;Name=Msa0384440 |
| chr3_1 | mRNA | 87565765 | 87569298 | 87565765 | ID=Msa0384440-mRNA-1;Parent=Msa0384440;Name=Msa0384440-mRNA-1;_AED=0.27;_eAED=0.27;_QI=220|1|1|1|1|1|5|338|192 |
| chr3_1 | exon | 87565765 | 87566028 | 87565765 | ID=Msa0384440-mRNA-1:exon:23528;Parent=Msa0384440-mRNA-1 |
| chr3_1 | exon | 87566179 | 87566314 | 87566179 | ID=Msa0384440-mRNA-1:exon:23529;Parent=Msa0384440-mRNA-1 |
| chr3_1 | exon | 87567359 | 87567496 | 87567359 | ID=Msa0384440-mRNA-1:exon:23530;Parent=Msa0384440-mRNA-1 |
| chr3_1 | exon | 87567596 | 87567717 | 87567596 | ID=Msa0384440-mRNA-1:exon:23531;Parent=Msa0384440-mRNA-1 |
| chr3_1 | exon | 87568822 | 87569298 | 87568822 | ID=Msa0384440-mRNA-1:exon:23532;Parent=Msa0384440-mRNA-1 |
| chr3_1 | five_prime_UTR | 87565765 | 87565984 | 87565765 | ID=Msa0384440-mRNA-1:five_prime_utr;Parent=Msa0384440-mRNA-1 |
| chr3_1 | CDS | 87565985 | 87566028 | 87565985 | ID=Msa0384440-mRNA-1:cds;Parent=Msa0384440-mRNA-1 |
| chr3_1 | CDS | 87566179 | 87566314 | 87566179 | ID=Msa0384440-mRNA-1:cds;Parent=Msa0384440-mRNA-1 |
| chr3_1 | CDS | 87567359 | 87567496 | 87567359 | ID=Msa0384440-mRNA-1:cds;Parent=Msa0384440-mRNA-1 |
| chr3_1 | CDS | 87567596 | 87567717 | 87567596 | ID=Msa0384440-mRNA-1:cds;Parent=Msa0384440-mRNA-1 |
| chr3_1 | CDS | 87568822 | 87568960 | 87568822 | ID=Msa0384440-mRNA-1:cds;Parent=Msa0384440-mRNA-1 |
| chr3_1 | three_prime_UTR | 87568961 | 87569298 | 87568961 | ID=Msa0384440-mRNA-1:three_prime_utr;Parent=Msa0384440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
