AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522590 MtrunA17_Chr3g0141211 97.396 192 5 0 1 192 1 192 6.53e-141 390
Msa0522590 MtrunA17_Chr5g0427911 67.662 201 56 2 1 192 1 201 1.35e-100 288
Msa0522590 MtrunA17_Chr5g0439731 28.846 156 79 4 9 133 411 565 8.10e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522590 AT1G09920.1 66.154 195 55 2 1 187 1 192 4.00e-90 262
Msa0522590 AT4G15420.2 27.381 168 90 4 1 137 515 681 1.92e-16 77.0
Msa0522590 AT4G15420.1 27.381 168 90 4 1 137 392 558 4.48e-14 70.1

Find 58 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCATAACCATTGGGTATT+TGG 0.116991 3_4:+75859659 None:intergenic
ATGGGGAGATTTCGGAATTT+AGG 0.232320 3_4:+75862914 None:intergenic
ATTAGGTTATGGGGAGATTT+CGG 0.255058 3_4:+75862906 None:intergenic
CCTCTGCTAATGCACATTAC+TGG 0.270494 3_4:+75859799 None:intergenic
TAAATACATACGAGATTGTT+TGG 0.284822 3_4:-75859469 None:intergenic
TGATCTTGAGCATGTATCTT+TGG 0.328151 3_4:+75862488 None:intergenic
AATTATTGTAGTTCTGCATT+TGG 0.328190 3_4:-75859613 Msa0522590:three_prime_UTR
TTACAAAGGTTACGGGAATT+AGG 0.337405 3_4:+75862889 None:intergenic
TGCTCTGGCAGATCAATTGC+AGG 0.385813 3_4:+75861273 None:intergenic
AAATACATACGAGATTGTTT+GGG 0.388614 3_4:-75859468 None:intergenic
AGGTTACGGGAATTAGGTTA+TGG 0.388918 3_4:+75862895 None:intergenic
TATTCAACGAACTAATCTTC+AGG 0.397027 3_4:+75862829 None:intergenic
ATGTAAGCTTTGTGGTGATA+TGG 0.405008 3_4:-75862513 Msa0522590:CDS
AATGACTCAAATTTATCTCT+TGG 0.410237 3_4:+75859581 None:intergenic
TGTTTCACTGCACAATGAAC+AGG 0.411626 3_4:+75861380 None:intergenic
CTCTGCTAATGCACATTACT+GGG 0.415693 3_4:+75859800 None:intergenic
AATTGATCTGCCAGAGCATC+AGG 0.420849 3_4:-75861268 Msa0522590:intron
TTTGAAAGATAAACAGCTAA+TGG 0.422807 3_4:+75859544 None:intergenic
GAGAGTGATTACAAAGGTTA+CGG 0.428574 3_4:+75862881 None:intergenic
TCGTTCGCATCTCTTTCAGC+TGG 0.432058 3_4:+75859911 None:intergenic
ACAATGCTGCAGGGTCTTCA+AGG 0.432443 3_4:-75861047 Msa0522590:intron
AGAGTGATTACAAAGGTTAC+GGG 0.457009 3_4:+75862882 None:intergenic
ACTCACAGGTGACAATCCTC+TGG 0.461845 3_4:+75861313 None:intergenic
AAATACTGCATAATGTCTGT+TGG 0.464385 3_4:-75859524 Msa0522590:three_prime_UTR
GACCACTACACCTGATGCTC+TGG 0.469028 3_4:+75861258 None:intergenic
GAGTGCAAATCAATATTTGC+AGG 0.472364 3_4:+75862563 None:intergenic
AATACTGCATAATGTCTGTT+GGG 0.476848 3_4:-75859523 Msa0522590:three_prime_UTR
TGCACTCTGTCCATTGCGCT+CGG 0.478848 3_4:-75862547 Msa0522590:CDS
GGCAGATCAATTGCAGGCAA+TGG 0.486110 3_4:+75861279 None:intergenic
TGAATACGAATGAATTATAC+AGG 0.487152 3_4:+75859736 None:intergenic
GGTTACGGGAATTAGGTTAT+GGG 0.491009 3_4:+75862896 None:intergenic
GCATATGCTAGTGGCTTGAT+CGG 0.499654 3_4:+75862760 None:intergenic
ACTGGTATTGCTGTCATACT+CGG 0.531935 3_4:-75859851 Msa0522590:CDS
CATATGCTAGTGGCTTGATC+GGG 0.538378 3_4:+75862761 None:intergenic
GGAATACAAGACAATGCTGC+AGG 0.543487 3_4:-75861057 Msa0522590:CDS
CTCACAGGTGACAATCCTCT+GGG 0.566762 3_4:+75861314 None:intergenic
CCACTAGCATATGCTCTCAC+TGG 0.575004 3_4:-75862751 Msa0522590:intron
AATCATGAATTCAATTGCAA+CGG 0.578333 3_4:-75861078 Msa0522590:CDS
CTATTTAAACACCCATGCAC+CGG 0.581826 3_4:-75862465 Msa0522590:intron
AATTGTGACATACCGGTGCA+TGG 0.591733 3_4:+75862453 None:intergenic
TTCATTGTGCAGTGAAACAA+TGG 0.598362 3_4:-75861376 Msa0522590:CDS
TGCAAATCAATATTTGCAGG+TGG 0.598379 3_4:+75862566 None:intergenic
ATTAAAGAGAGTGATTACAA+AGG 0.599545 3_4:+75862875 None:intergenic
CGGAATTTAGGAATGAAACA+CGG 0.603093 3_4:+75862926 None:intergenic
GTCTGACATATTTGTTACAG+AGG 0.611676 3_4:+75861115 None:intergenic
TGGAAACTCACAGAACTCAC+AGG 0.615594 3_4:+75861299 None:intergenic
TTTCAAGGTTCCGAGCGCAA+TGG 0.616645 3_4:+75862537 None:intergenic
GCAAATCAATATTTGCAGGT+GGG 0.624728 3_4:+75862567 None:intergenic
CCAGTGAGAGCATATGCTAG+TGG 0.631811 3_4:+75862751 None:intergenic
AATGTGCATTAGCAGAGGAG+AGG 0.637785 3_4:-75859794 Msa0522590:exon
GACTCTCACCAAATACCCAA+TGG 0.641618 3_4:-75859667 Msa0522590:three_prime_UTR
GTTACGGGAATTAGGTTATG+GGG 0.642926 3_4:+75862897 None:intergenic
ATTGTGACATACCGGTGCAT+GGG 0.646887 3_4:+75862454 None:intergenic
TGAAACACGGAACCAGAACA+CGG 0.651719 3_4:+75862939 None:intergenic
CCAGTAATGTGCATTAGCAG+AGG 0.653614 3_4:-75859799 Msa0522590:exon
CACAGGTGACAATCCTCTGG+GGG 0.654397 3_4:+75861316 None:intergenic
GAATACAAGACAATGCTGCA+GGG 0.679707 3_4:-75861056 Msa0522590:CDS
TCACAGGTGACAATCCTCTG+GGG 0.714936 3_4:+75861315 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACCAATTTTAATAAAA+TGG - chr3_4:75860055-75860074 Msa0522590:intron 10.0%
!!! TTAACCAATTTTAATAAAAT+GGG - chr3_4:75860056-75860075 Msa0522590:intron 10.0%
!!! TTTTTCTAATTTTTTATGTT+AGG + chr3_4:75860948-75860967 None:intergenic 10.0%
!! CATAAAAAATTAGAAAAAAT+TGG - chr3_4:75860950-75860969 Msa0522590:intron 10.0%
!!! ATTGAAAGTCTTATTTTTTA+TGG - chr3_4:75859852-75859871 Msa0522590:CDS 15.0%
!!! TTTGATCTTTAATAACTTTT+AGG - chr3_4:75861295-75861314 Msa0522590:CDS 15.0%
!! AAAAAAGAAATAGAAGTAAA+TGG + chr3_4:75862515-75862534 None:intergenic 15.0%
!! ATTCAAAAACAAGTTTGATT+AGG + chr3_4:75859811-75859830 None:intergenic 20.0%
!!! TTATGGTTTATTTTAGTGAT+CGG - chr3_4:75859869-75859888 Msa0522590:CDS 20.0%
!! GATGGTTTATAATTATAGAT+TGG + chr3_4:75860116-75860135 None:intergenic 20.0%
!! AAATGAAATAGTAGATTGAT+AGG - chr3_4:75860189-75860208 Msa0522590:intron 20.0%
!!! TGATATACTCAAATTGATTT+AGG - chr3_4:75860233-75860252 Msa0522590:intron 20.0%
!!! GATATACTCAAATTGATTTA+GGG - chr3_4:75860234-75860253 Msa0522590:intron 20.0%
!! AATTAAGTATCAATGAAGAT+TGG - chr3_4:75860505-75860524 Msa0522590:intron 20.0%
!!! TAAGCAACATTTTTTGTAAT+GGG + chr3_4:75860616-75860635 None:intergenic 20.0%
!!! AATATTTTATATATGCACGA+AGG - chr3_4:75861116-75861135 Msa0522590:CDS 20.0%
!! ATGCAAATTTCTTAATTCAA+AGG + chr3_4:75861240-75861259 None:intergenic 20.0%
!! AATAAGCAAATAGAATAGTT+AGG + chr3_4:75861512-75861531 None:intergenic 20.0%
!!! CTATTTGCTTATTCAAATTT+TGG - chr3_4:75861519-75861538 Msa0522590:intron 20.0%
!!! AAAAATAATAGACTTCGTTT+TGG + chr3_4:75861745-75861764 None:intergenic 20.0%
!!! AAACGAAGTCTATTATTTTT+AGG - chr3_4:75861745-75861764 Msa0522590:intron 20.0%
!!! TCTATTATTTTTAGGTGATT+GGG - chr3_4:75861753-75861772 Msa0522590:intron 20.0%
!!! GGATTATGAATTTATGATTT+TGG - chr3_4:75862323-75862342 Msa0522590:intron 20.0%
!!! ATCTATTTTTATTCAGAGAA+AGG - chr3_4:75862636-75862655 Msa0522590:intron 20.0%
!! AAAAAAAATGCATAACCATT+GGG + chr3_4:75862815-75862834 None:intergenic 20.0%
!! TAAAAAAAATGCATAACCAT+TGG + chr3_4:75862816-75862835 None:intergenic 20.0%
! ATTAAAGAGAGTGATTACAA+AGG + chr3_4:75859592-75859611 None:intergenic 25.0%
!!! TATGGTTTATTTTAGTGATC+GGG - chr3_4:75859870-75859889 Msa0522590:CDS 25.0%
! AAATAGTAGATTGATAGGAT+GGG - chr3_4:75860194-75860213 Msa0522590:intron 25.0%
!!! TTTTTAAGCGAAACTTGAAT+AGG - chr3_4:75860287-75860306 Msa0522590:intron 25.0%
!! GGTTAATTTGAAATGTTCAT+TGG - chr3_4:75860315-75860334 Msa0522590:intron 25.0%
!!! AGTTTCTTTCTTTAACTTGT+CGG - chr3_4:75860537-75860556 Msa0522590:intron 25.0%
!!! AAGCAACATTTTTTGTAATG+GGG + chr3_4:75860615-75860634 None:intergenic 25.0%
!!! CTAAGCAACATTTTTTGTAA+TGG + chr3_4:75860617-75860636 None:intergenic 25.0%
!! TAGCTTTTGTAATGTTTTCT+TGG - chr3_4:75860695-75860714 Msa0522590:intron 25.0%
! GTAATCATGTATGTACTATT+TGG - chr3_4:75860767-75860786 Msa0522590:intron 25.0%
! AAGATTCATATCAGTCATAA+AGG - chr3_4:75860886-75860905 Msa0522590:intron 25.0%
! AGATTCATATCAGTCATAAA+GGG - chr3_4:75860887-75860906 Msa0522590:intron 25.0%
! ACAATAAGTCAAAGATTGTT+AGG + chr3_4:75861019-75861038 None:intergenic 25.0%
!!! AATAACTTTTAGGAAGTATG+TGG - chr3_4:75861305-75861324 Msa0522590:CDS 25.0%
!!! ATAACTTTTAGGAAGTATGT+GGG - chr3_4:75861306-75861325 Msa0522590:CDS 25.0%
! AATCATGAATTCAATTGCAA+CGG - chr3_4:75861386-75861405 Msa0522590:CDS 25.0%
!!! TCACTTAAGTTTGTTATTGT+AGG - chr3_4:75861688-75861707 Msa0522590:intron 25.0%
!!! GTCTATTATTTTTAGGTGAT+TGG - chr3_4:75861752-75861771 Msa0522590:intron 25.0%
!!! CTATTATTTTTAGGTGATTG+GGG - chr3_4:75861754-75861773 Msa0522590:intron 25.0%
!!! GTTTAGCAACTGTTTTTTTA+AGG - chr3_4:75861776-75861795 Msa0522590:intron 25.0%
!!! AACTGTTTTTTTAAGGTTGT+TGG - chr3_4:75861783-75861802 Msa0522590:intron 25.0%
! ACTCATAAATATTAACCAGT+TGG + chr3_4:75861867-75861886 None:intergenic 25.0%
! AGGCTTAATGCTAAATAATA+GGG - chr3_4:75861959-75861978 Msa0522590:intron 25.0%
!!! AACATTTTTAAGCAGATCAA+AGG + chr3_4:75861992-75862011 None:intergenic 25.0%
! AACTGGTCATACTATTATTA+TGG + chr3_4:75862112-75862131 None:intergenic 25.0%
! GAGTTTAAATTAACAAGTCA+AGG - chr3_4:75862256-75862275 Msa0522590:intron 25.0%
!!! GTAATCGATTTTCTTTTGTT+AGG - chr3_4:75862302-75862321 Msa0522590:intron 25.0%
!! CCACAATAGAATAACAATTT+TGG + chr3_4:75862352-75862371 None:intergenic 25.0%
!! CCAAAATTGTTATTCTATTG+TGG - chr3_4:75862349-75862368 Msa0522590:intron 25.0%
! TTAGTGTCATAAATCTTACT+TGG - chr3_4:75862408-75862427 Msa0522590:intron 25.0%
!!! TCTATTTCTTTTTTCTGTGA+AGG - chr3_4:75862521-75862540 Msa0522590:CDS 25.0%
!!! TTTTTCACAATAGCTTTAAC+TGG - chr3_4:75862595-75862614 Msa0522590:intron 25.0%
! TGAATACGAATGAATTATAC+AGG + chr3_4:75862731-75862750 None:intergenic 25.0%
!! AATTATTGTAGTTCTGCATT+TGG - chr3_4:75862851-75862870 Msa0522590:five_prime_UTR 25.0%
! AATGACTCAAATTTATCTCT+TGG + chr3_4:75862886-75862905 None:intergenic 25.0%
! TTTGAAAGATAAACAGCTAA+TGG + chr3_4:75862923-75862942 None:intergenic 25.0%
TATTCAACGAACTAATCTTC+AGG + chr3_4:75859638-75859657 None:intergenic 30.0%
! TTCGTTGAATAACGTTTTGT+TGG - chr3_4:75859647-75859666 Msa0522590:three_prime_UTR 30.0%
! CACAAAGCTTACATTTTTCA+AGG + chr3_4:75859945-75859964 None:intergenic 30.0%
CTTGAAAAATGTAAGCTTTG+TGG - chr3_4:75859943-75859962 Msa0522590:intron 30.0%
! GACGCCCATTTTATTAAAAT+TGG + chr3_4:75860063-75860082 None:intergenic 30.0%
GAAATAGTAGATTGATAGGA+TGG - chr3_4:75860193-75860212 Msa0522590:intron 30.0%
! TACTCAAATTGATTTAGGGA+TGG - chr3_4:75860238-75860257 Msa0522590:intron 30.0%
! ACTCAAATTGATTTAGGGAT+GGG - chr3_4:75860239-75860258 Msa0522590:intron 30.0%
TGTTAATGATGGTAACTGAA+TGG + chr3_4:75860354-75860373 None:intergenic 30.0%
TTACCATCATTAACATAAGC+CGG - chr3_4:75860359-75860378 Msa0522590:intron 30.0%
ATCTAATCCTTCTAGATACT+TGG + chr3_4:75860421-75860440 None:intergenic 30.0%
!!! TTTTTGAAACTCTTGACAGT+TGG - chr3_4:75860449-75860468 Msa0522590:intron 30.0%
CAATTAGTGCTTCAGTTTAT+AGG - chr3_4:75860649-75860668 Msa0522590:intron 30.0%
! CAACACGGATTATATATTGT+CGG - chr3_4:75860728-75860747 Msa0522590:intron 30.0%
! ATGTATGTACTATTTGGAAC+AGG - chr3_4:75860773-75860792 Msa0522590:intron 30.0%
! TACTATTTGGAACAGGAATT+CGG - chr3_4:75860780-75860799 Msa0522590:intron 30.0%
TGATACAACGAAAATAAGAC+TGG + chr3_4:75860847-75860866 None:intergenic 30.0%
GATTCATATCAGTCATAAAG+GGG - chr3_4:75860888-75860907 Msa0522590:intron 30.0%
ATTAGAAAAAATTGGGAGTC+TGG - chr3_4:75860958-75860977 Msa0522590:intron 30.0%
TAATCTATGTAGTATAACCG+AGG - chr3_4:75861260-75861279 Msa0522590:intron 30.0%
TCAAACTAAAATTAGTGCCT+CGG + chr3_4:75861280-75861299 None:intergenic 30.0%
CATGTAATACTTGCACAAAA+TGG + chr3_4:75861546-75861565 None:intergenic 30.0%
ATTTCAACGTAAGCCTAATA+GGG + chr3_4:75861631-75861650 None:intergenic 30.0%
!! ATAATAGACTTCGTTTTGGA+CGG + chr3_4:75861741-75861760 None:intergenic 30.0%
CTTACAAGTACAATCTTTAG+TGG - chr3_4:75861936-75861955 Msa0522590:intron 30.0%
GAGGCTTAATGCTAAATAAT+AGG - chr3_4:75861958-75861977 Msa0522590:intron 30.0%
!! AGTACTGAGGTATATTTTGA+AGG - chr3_4:75862152-75862171 Msa0522590:intron 30.0%
! GTATCTTTAGAGGAGTAAAA+TGG - chr3_4:75862452-75862471 Msa0522590:intron 30.0%
AGAAGTAAATGGTTTACTCA+AGG + chr3_4:75862504-75862523 None:intergenic 30.0%
! GAAAAAAAGACGTCTTTTTG+AGG + chr3_4:75862581-75862600 None:intergenic 30.0%
AAATACTGCATAATGTCTGT+TGG - chr3_4:75862940-75862959 Msa0522590:five_prime_UTR 30.0%
AATACTGCATAATGTCTGTT+GGG - chr3_4:75862941-75862960 Msa0522590:five_prime_UTR 30.0%
! GAACACGGATTTTTGTACTT+AGG + chr3_4:75859513-75859532 None:intergenic 35.0%
AAGTACAAAAATCCGTGTTC+TGG - chr3_4:75859513-75859532 Msa0522590:three_prime_UTR 35.0%
CGGAATTTAGGAATGAAACA+CGG + chr3_4:75859541-75859560 None:intergenic 35.0%
ATTAGGTTATGGGGAGATTT+CGG + chr3_4:75859561-75859580 None:intergenic 35.0%
TTACAAAGGTTACGGGAATT+AGG + chr3_4:75859578-75859597 None:intergenic 35.0%
AGAGTGATTACAAAGGTTAC+GGG + chr3_4:75859585-75859604 None:intergenic 35.0%
GAGAGTGATTACAAAGGTTA+CGG + chr3_4:75859586-75859605 None:intergenic 35.0%
GCAAATCAATATTTGCAGGT+GGG + chr3_4:75859900-75859919 None:intergenic 35.0%
TGCAAATCAATATTTGCAGG+TGG + chr3_4:75859901-75859920 None:intergenic 35.0%
GAGTGCAAATCAATATTTGC+AGG + chr3_4:75859904-75859923 None:intergenic 35.0%
! ATGTAAGCTTTGTGGTGATA+TGG - chr3_4:75859951-75859970 Msa0522590:intron 35.0%
TGATCTTGAGCATGTATCTT+TGG + chr3_4:75859979-75859998 None:intergenic 35.0%
AGCAAGTAATTGTGACATAC+CGG + chr3_4:75860021-75860040 None:intergenic 35.0%
!!! TGGGCGTCACAATTTTAATT+AGG - chr3_4:75860075-75860094 Msa0522590:intron 35.0%
CTATTCTATCTCTACGAAAC+TGG + chr3_4:75860152-75860171 None:intergenic 35.0%
CAGTTTCGTAGAGATAGAAT+AGG - chr3_4:75860150-75860169 Msa0522590:intron 35.0%
! AAATTGATTTAGGGATGGGT+GGG - chr3_4:75860243-75860262 Msa0522590:intron 35.0%
GCGAAACTTGAATAGGAAAA+TGG - chr3_4:75860294-75860313 Msa0522590:intron 35.0%
GCATTATGTTTGGCATCAAA+TGG - chr3_4:75860392-75860411 Msa0522590:intron 35.0%
! AATTTTGCTAGCATCACTTC+TGG - chr3_4:75860474-75860493 Msa0522590:intron 35.0%
! ATTTTGCTAGCATCACTTCT+GGG - chr3_4:75860475-75860494 Msa0522590:intron 35.0%
!! TTCTTTCTTTAACTTGTCGG+AGG - chr3_4:75860540-75860559 Msa0522590:intron 35.0%
! TGGTTTTCCTGAAATGATTC+TGG - chr3_4:75860571-75860590 Msa0522590:intron 35.0%
! GGTTTTCCTGAAATGATTCT+GGG - chr3_4:75860572-75860591 Msa0522590:intron 35.0%
! TGTAATGGGGAATTACTAAG+AGG + chr3_4:75860602-75860621 None:intergenic 35.0%
AGTGCTTCAGTTTATAGGTT+TGG - chr3_4:75860654-75860673 Msa0522590:intron 35.0%
TCGGTGGAAAATTTGTAGTA+AGG - chr3_4:75860799-75860818 Msa0522590:intron 35.0%
AAAGAAAATGTGAATCGTGC+AGG - chr3_4:75861058-75861077 Msa0522590:CDS 35.0%
TTCATTGTGCAGTGAAACAA+TGG - chr3_4:75861088-75861107 Msa0522590:CDS 35.0%
! GTCTGACATATTTGTTACAG+AGG + chr3_4:75861352-75861371 None:intergenic 35.0%
!! TGCAAGTTTTAGTCTTTCTG+AGG - chr3_4:75861466-75861485 Msa0522590:intron 35.0%
!! GCAAGTTTTAGTCTTTCTGA+GGG - chr3_4:75861467-75861486 Msa0522590:intron 35.0%
! TTAGTCTTTCTGAGGGTTAA+TGG - chr3_4:75861474-75861493 Msa0522590:intron 35.0%
! GCTTTTGTTCCTGTTAGTTA+CGG - chr3_4:75861583-75861602 Msa0522590:intron 35.0%
GTATTAACTCCGTAACTAAC+AGG + chr3_4:75861595-75861614 None:intergenic 35.0%
CATTTCAACGTAAGCCTAAT+AGG + chr3_4:75861632-75861651 None:intergenic 35.0%
! AGTGAGTGCTTTTCTTTAGA+GGG + chr3_4:75861673-75861692 None:intergenic 35.0%
! AAGTGAGTGCTTTTCTTTAG+AGG + chr3_4:75861674-75861693 None:intergenic 35.0%
ACAAGTACAATCTTTAGTGG+AGG - chr3_4:75861939-75861958 Msa0522590:intron 35.0%
AATCACGAAGTTCACTTATG+TGG + chr3_4:75862054-75862073 None:intergenic 35.0%
TTATTCTATTGTGGTCTACG+TGG - chr3_4:75862358-75862377 Msa0522590:intron 35.0%
TATTCTATTGTGGTCTACGT+GGG - chr3_4:75862359-75862378 Msa0522590:intron 35.0%
GTGTCATAAATCTTACTTGG+AGG - chr3_4:75862411-75862430 Msa0522590:intron 35.0%
AGATACACTTGACATCAACT+TGG + chr3_4:75862438-75862457 None:intergenic 35.0%
GATGTCAAGTGTATCTTTAG+AGG - chr3_4:75862442-75862461 Msa0522590:intron 35.0%
! TTTTTCTGTGAAGGAATGAG+AGG - chr3_4:75862530-75862549 Msa0522590:CDS 35.0%
ATGCATAACCATTGGGTATT+TGG + chr3_4:75862808-75862827 None:intergenic 35.0%
ATGGGGAGATTTCGGAATTT+AGG + chr3_4:75859553-75859572 None:intergenic 40.0%
GTTACGGGAATTAGGTTATG+GGG + chr3_4:75859570-75859589 None:intergenic 40.0%
GGTTACGGGAATTAGGTTAT+GGG + chr3_4:75859571-75859590 None:intergenic 40.0%
AGGTTACGGGAATTAGGTTA+TGG + chr3_4:75859572-75859591 None:intergenic 40.0%
CTATTTAAACACCCATGCAC+CGG - chr3_4:75859999-75860018 Msa0522590:intron 40.0%
AGTAGATTGATAGGATGGGT+TGG - chr3_4:75860198-75860217 Msa0522590:intron 40.0%
! GTAGATTGATAGGATGGGTT+GGG - chr3_4:75860199-75860218 Msa0522590:intron 40.0%
! CAAATTGATTTAGGGATGGG+TGG - chr3_4:75860242-75860261 Msa0522590:intron 40.0%
CATCCGGCTTATGTTAATGA+TGG + chr3_4:75860365-75860384 None:intergenic 40.0%
CATCATTAACATAAGCCGGA+TGG - chr3_4:75860363-75860382 Msa0522590:intron 40.0%
! ATGGACCAAGGCATTATGTT+TGG - chr3_4:75860382-75860401 Msa0522590:intron 40.0%
TGATGCCAAACATAATGCCT+TGG + chr3_4:75860390-75860409 None:intergenic 40.0%
ATGGTGACCAAGTATCTAGA+AGG - chr3_4:75860411-75860430 Msa0522590:intron 40.0%
GGATATCCCAGAATCATTTC+AGG + chr3_4:75860581-75860600 None:intergenic 40.0%
! CTTGGTAGTTCTGTTCAACA+CGG - chr3_4:75860713-75860732 Msa0522590:intron 40.0%
! TATTTGGAACAGGAATTCGG+TGG - chr3_4:75860783-75860802 Msa0522590:intron 40.0%
AAATTGGGAGTCTGGTCAAA+TGG - chr3_4:75860966-75860985 Msa0522590:intron 40.0%
! ATAGTTGATTCAGTTCCCCA+GGG - chr3_4:75860991-75861010 Msa0522590:intron 40.0%
TGTTTCACTGCACAATGAAC+AGG + chr3_4:75861087-75861106 None:intergenic 40.0%
GAATACAAGACAATGCTGCA+GGG - chr3_4:75861408-75861427 Msa0522590:intron 40.0%
! TCTTTCTGAGGGTTAATGGA+TGG - chr3_4:75861478-75861497 Msa0522590:intron 40.0%
! CTTTCTGAGGGTTAATGGAT+GGG - chr3_4:75861479-75861498 Msa0522590:intron 40.0%
! TTTCTGAGGGTTAATGGATG+GGG - chr3_4:75861480-75861499 Msa0522590:intron 40.0%
TACGGAGTTAATACTTGCTC+AGG - chr3_4:75861601-75861620 Msa0522590:intron 40.0%
!! AGTGCTTTTCTTTAGAGGGA+GGG + chr3_4:75861669-75861688 None:intergenic 40.0%
TTAAGGTTGTTGGAAGCAAC+CGG - chr3_4:75861793-75861812 Msa0522590:intron 40.0%
! TTGTTGTTGTTGGAACCAAC+TGG - chr3_4:75861849-75861868 Msa0522590:intron 40.0%
! TTTTCCACCTTTGTGTAGCT+CGG + chr3_4:75862031-75862050 None:intergenic 40.0%
CAGTACTCATCTTACTGCAT+CGG + chr3_4:75862139-75862158 None:intergenic 40.0%
! ATGCAGTAAGATGAGTACTG+AGG - chr3_4:75862139-75862158 Msa0522590:intron 40.0%
CGTGGGATGTAAACATTTAC+TGG - chr3_4:75862376-75862395 Msa0522590:intron 40.0%
ACTGGTATTGCTGTCATACT+CGG - chr3_4:75862613-75862632 Msa0522590:intron 40.0%
CTCTGCTAATGCACATTACT+GGG + chr3_4:75862667-75862686 None:intergenic 40.0%
TGAAACACGGAACCAGAACA+CGG + chr3_4:75859528-75859547 None:intergenic 45.0%
CATATGCTAGTGGCTTGATC+GGG + chr3_4:75859706-75859725 None:intergenic 45.0%
GCATATGCTAGTGGCTTGAT+CGG + chr3_4:75859707-75859726 None:intergenic 45.0%
ATTGTGACATACCGGTGCAT+GGG + chr3_4:75860013-75860032 None:intergenic 45.0%
AATTGTGACATACCGGTGCA+TGG + chr3_4:75860014-75860033 None:intergenic 45.0%
ACTGGATGAGTAGGATTGGA+TGG + chr3_4:75860134-75860153 None:intergenic 45.0%
CGAAACTGGATGAGTAGGAT+TGG + chr3_4:75860138-75860157 None:intergenic 45.0%
CTCTACGAAACTGGATGAGT+AGG + chr3_4:75860143-75860162 None:intergenic 45.0%
!! ATAGGATGGGTTGGGTACTT+GGG - chr3_4:75860207-75860226 Msa0522590:intron 45.0%
ACATAATGCCTTGGTCCATC+CGG + chr3_4:75860381-75860400 None:intergenic 45.0%
CTGGGGAACTGAATCAACTA+TGG + chr3_4:75860992-75861011 None:intergenic 45.0%
! CATAGTTGATTCAGTTCCCC+AGG - chr3_4:75860990-75861009 Msa0522590:intron 45.0%
AAAGATTGTTAGGCACCCTG+GGG + chr3_4:75861009-75861028 None:intergenic 45.0%
CAAAGATTGTTAGGCACCCT+GGG + chr3_4:75861010-75861029 None:intergenic 45.0%
TCAAAGATTGTTAGGCACCC+TGG + chr3_4:75861011-75861030 None:intergenic 45.0%
TGGAAACTCACAGAACTCAC+AGG + chr3_4:75861168-75861187 None:intergenic 45.0%
! AATTGATCTGCCAGAGCATC+AGG - chr3_4:75861196-75861215 Msa0522590:intron 45.0%
GGAATACAAGACAATGCTGC+AGG - chr3_4:75861407-75861426 Msa0522590:intron 45.0%
! TTCTGAGGGTTAATGGATGG+GGG - chr3_4:75861481-75861500 Msa0522590:intron 45.0%
GGAGTTAATACTTGCTCAGG+TGG - chr3_4:75861604-75861623 Msa0522590:intron 45.0%
!! GAGTGCTTTTCTTTAGAGGG+AGG + chr3_4:75861670-75861689 None:intergenic 45.0%
CTTGTACCACTAAGTGGGAT+CGG + chr3_4:75861823-75861842 None:intergenic 45.0%
! CAAGCCTTGTACCACTAAGT+GGG + chr3_4:75861828-75861847 None:intergenic 45.0%
! CAAGGCTTGGTTGTTGTTGT+TGG - chr3_4:75861839-75861858 Msa0522590:intron 45.0%
TTGTAGTCCGAGCTACACAA+AGG - chr3_4:75862021-75862040 Msa0522590:intron 45.0%
CCTCTGCTAATGCACATTAC+TGG + chr3_4:75862668-75862687 None:intergenic 45.0%
CCAGTAATGTGCATTAGCAG+AGG - chr3_4:75862665-75862684 Msa0522590:intron 45.0%
AATGTGCATTAGCAGAGGAG+AGG - chr3_4:75862670-75862689 Msa0522590:intron 45.0%
GACTCTCACCAAATACCCAA+TGG - chr3_4:75862797-75862816 Msa0522590:five_prime_UTR 45.0%
!! ATAAAAAATTAGAAAAAATT+GGG - chr3_4:75860951-75860970 Msa0522590:intron 5.0%
! CCAGTGAGAGCATATGCTAG+TGG + chr3_4:75859716-75859735 None:intergenic 50.0%
CCACTAGCATATGCTCTCAC+TGG - chr3_4:75859713-75859732 Msa0522590:three_prime_UTR 50.0%
TTTCAAGGTTCCGAGCGCAA+TGG + chr3_4:75859930-75859949 None:intergenic 50.0%
!! GATAGGATGGGTTGGGTACT+TGG - chr3_4:75860206-75860225 Msa0522590:intron 50.0%
!! TAGGGATGGGTGGGTTAGTT+CGG - chr3_4:75860252-75860271 Msa0522590:intron 50.0%
AACATAAGCCGGATGGACCA+AGG - chr3_4:75860370-75860389 Msa0522590:intron 50.0%
! ACTTGTCGGAGGTCTGAAAC+TGG - chr3_4:75860551-75860570 Msa0522590:intron 50.0%
TCACAGGTGACAATCCTCTG+GGG + chr3_4:75861152-75861171 None:intergenic 50.0%
CTCACAGGTGACAATCCTCT+GGG + chr3_4:75861153-75861172 None:intergenic 50.0%
ACTCACAGGTGACAATCCTC+TGG + chr3_4:75861154-75861173 None:intergenic 50.0%
GGCAGATCAATTGCAGGCAA+TGG + chr3_4:75861188-75861207 None:intergenic 50.0%
TGCTCTGGCAGATCAATTGC+AGG + chr3_4:75861194-75861213 None:intergenic 50.0%
ACAATGCTGCAGGGTCTTCA+AGG - chr3_4:75861417-75861436 Msa0522590:intron 50.0%
TTGCTCAGGTGGTCCCTATT+AGG - chr3_4:75861615-75861634 Msa0522590:intron 50.0%
CGATCCCACTTAGTGGTACA+AGG - chr3_4:75861821-75861840 Msa0522590:intron 50.0%
! CCAAGCCTTGTACCACTAAG+TGG + chr3_4:75861829-75861848 None:intergenic 50.0%
CCACTTAGTGGTACAAGGCT+TGG - chr3_4:75861826-75861845 Msa0522590:intron 50.0%
TAGTCCGAGCTACACAAAGG+TGG - chr3_4:75862024-75862043 Msa0522590:intron 50.0%
!! CTTACTGCATCGGCTGTAAC+TGG + chr3_4:75862129-75862148 None:intergenic 50.0%
TCGTTCGCATCTCTTTCAGC+TGG + chr3_4:75862556-75862575 None:intergenic 50.0%
TGCACTCTGTCCATTGCGCT+CGG - chr3_4:75859917-75859936 Msa0522590:CDS 55.0%
AAGGTGAAAGTTGCCCCCAG+AGG - chr3_4:75861135-75861154 Msa0522590:CDS 55.0%
CACAGGTGACAATCCTCTGG+GGG + chr3_4:75861151-75861170 None:intergenic 55.0%
! TGCCAGAGCATCAGGTGTAG+TGG - chr3_4:75861204-75861223 Msa0522590:intron 55.0%
GACCACTACACCTGATGCTC+TGG + chr3_4:75861209-75861228 None:intergenic 55.0%
TGCTGCAGGGTCTTCAAGGT+AGG - chr3_4:75861421-75861440 Msa0522590:intron 55.0%
ACTAAGTGGGATCGGCTGAC+CGG + chr3_4:75861815-75861834 None:intergenic 55.0%
GGTCAGCCGATCCCACTTAG+TGG - chr3_4:75861814-75861833 Msa0522590:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 75859471 75863015 75859471 ID=Msa0522590;Name=Msa0522590
chr3_4 mRNA 75859471 75863015 75859471 ID=Msa0522590-mRNA-1;Parent=Msa0522590;Name=Msa0522590-mRNA-1;_AED=0.27;_eAED=0.27;_QI=220|1|1|1|1|1|5|334|192
chr3_4 exon 75859471 75859943 75859471 ID=Msa0522590-mRNA-1:exon:21813;Parent=Msa0522590-mRNA-1
chr3_4 exon 75861048 75861169 75861048 ID=Msa0522590-mRNA-1:exon:21812;Parent=Msa0522590-mRNA-1
chr3_4 exon 75861269 75861406 75861269 ID=Msa0522590-mRNA-1:exon:21811;Parent=Msa0522590-mRNA-1
chr3_4 exon 75862466 75862601 75862466 ID=Msa0522590-mRNA-1:exon:21810;Parent=Msa0522590-mRNA-1
chr3_4 exon 75862752 75863015 75862752 ID=Msa0522590-mRNA-1:exon:21809;Parent=Msa0522590-mRNA-1
chr3_4 five_prime_UTR 75862796 75863015 75862796 ID=Msa0522590-mRNA-1:five_prime_utr;Parent=Msa0522590-mRNA-1
chr3_4 CDS 75862752 75862795 75862752 ID=Msa0522590-mRNA-1:cds;Parent=Msa0522590-mRNA-1
chr3_4 CDS 75862466 75862601 75862466 ID=Msa0522590-mRNA-1:cds;Parent=Msa0522590-mRNA-1
chr3_4 CDS 75861269 75861406 75861269 ID=Msa0522590-mRNA-1:cds;Parent=Msa0522590-mRNA-1
chr3_4 CDS 75861048 75861169 75861048 ID=Msa0522590-mRNA-1:cds;Parent=Msa0522590-mRNA-1
chr3_4 CDS 75859805 75859943 75859805 ID=Msa0522590-mRNA-1:cds;Parent=Msa0522590-mRNA-1
chr3_4 three_prime_UTR 75859471 75859804 75859471 ID=Msa0522590-mRNA-1:three_prime_utr;Parent=Msa0522590-mRNA-1
Gene Sequence

>Msa0522590

ATGACAACAATACCCGATCAAGCCACTAGCATATGCTCTCACTGTGATCGGGCTATCCCACCTGCAAATATTGATTTGCACTCTGTCCATTGCGCTCGGAACCTTGAAAAATGTAAGCTTTGTGGTGATATGGTACCAAAGATACATGCTCAAGATCACTATTTAAACACCCATGCACCGGTTGCCTGTTCATTGTGCAGTGAAACAATGGAGCGCAATATTTTATATATGCACGAAGGTGAAAGTTGCCCCCAGAGGATTGTCACCTGTGAGTTCTGTGAGTTTCCATTGCCTGCAATTGATCTGCCAGAGCATCAGGAAGTATGTGGGAATCGAACAGAGATGTGTGACCTCTGTAACAAATATGTCAGACTACGTGAAAGATACAATCATGAATTCAATTGCAACGGAATACAAGACAATGCTGCAGGGTCTTCAAGGAATGAGAGGCCAGCTGAAAGAGATGCGAACGAATCCTCAAAAAGACGTCTTTTTTTCACAATAGCTTTAACTGGTATTGCTGTCATACTCGGATCTATTTTTATTCAGAGAAAGGCAGAACCCAGTAATGTGCATTAG

Protein sequence

>Msa0522590

MTTIPDQATSICSHCDRAIPPANIDLHSVHCARNLEKCKLCGDMVPKIHAQDHYLNTHAPVACSLCSETMERNILYMHEGESCPQRIVTCEFCEFPLPAIDLPEHQEVCGNRTEMCDLCNKYVRLRERYNHEFNCNGIQDNAAGSSRNERPAERDANESSKRRLFFTIALTGIAVILGSIFIQRKAEPSNVH*