Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385020 | XP_003603724.1 | 83.254 | 209 | 20 | 4 | 6 | 208 | 7 | 206 | 3.50e-115 | 337 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385020 | sp|Q9LQZ7|BBX21_ARATH | 38.589 | 241 | 81 | 7 | 17 | 193 | 18 | 255 | 1.02e-40 | 144 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385020 | G7J4N4 | 83.254 | 209 | 20 | 4 | 6 | 208 | 7 | 206 | 1.67e-115 | 337 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0385020 | Msa0385080 | 0.952913 | 8.662275e-111 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385020 | MtrunA17_Chr3g0142221 | 83.254 | 209 | 20 | 4 | 6 | 208 | 7 | 206 | 3.22e-119 | 337 |
Msa0385020 | MtrunA17_Chr1g0155811 | 45.148 | 237 | 71 | 10 | 17 | 212 | 18 | 236 | 3.86e-47 | 156 |
Msa0385020 | MtrunA17_Chr3g0145061 | 45.699 | 186 | 46 | 6 | 18 | 152 | 19 | 200 | 9.55e-42 | 141 |
Msa0385020 | MtrunA17_Chr4g0035651 | 43.791 | 153 | 49 | 4 | 18 | 135 | 19 | 169 | 1.06e-35 | 125 |
Msa0385020 | MtrunA17_Chr2g0314671 | 55.056 | 89 | 37 | 1 | 18 | 106 | 19 | 104 | 1.06e-28 | 108 |
Msa0385020 | MtrunA17_Chr2g0329511 | 32.984 | 191 | 109 | 4 | 18 | 197 | 19 | 201 | 9.47e-25 | 97.4 |
Msa0385020 | MtrunA17_Chr4g0033641 | 42.520 | 127 | 69 | 2 | 18 | 144 | 19 | 141 | 3.76e-24 | 95.9 |
Msa0385020 | MtrunA17_Chr5g0405151 | 32.121 | 165 | 96 | 5 | 17 | 179 | 18 | 168 | 8.11e-18 | 77.8 |
Msa0385020 | MtrunA17_Chr7g0220721 | 34.694 | 98 | 52 | 1 | 18 | 115 | 40 | 125 | 1.73e-12 | 65.5 |
Msa0385020 | MtrunA17_Chr1g0150471 | 37.647 | 85 | 41 | 1 | 18 | 102 | 20 | 92 | 6.72e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385020 | AT1G75540.1 | 38.589 | 241 | 81 | 7 | 17 | 193 | 18 | 255 | 1.04e-41 | 144 |
Msa0385020 | AT4G39070.1 | 60.000 | 105 | 39 | 2 | 18 | 121 | 19 | 121 | 4.85e-36 | 127 |
Msa0385020 | AT1G78600.1 | 53.933 | 89 | 38 | 1 | 18 | 106 | 19 | 104 | 2.57e-28 | 108 |
Msa0385020 | AT1G78600.2 | 53.933 | 89 | 38 | 1 | 18 | 106 | 19 | 104 | 4.20e-28 | 108 |
Msa0385020 | AT1G06040.2 | 52.809 | 89 | 39 | 1 | 18 | 106 | 19 | 104 | 6.47e-27 | 101 |
Msa0385020 | AT1G06040.1 | 52.809 | 89 | 39 | 1 | 18 | 106 | 19 | 104 | 4.39e-26 | 101 |
Msa0385020 | AT2G31380.1 | 51.685 | 89 | 40 | 1 | 18 | 106 | 19 | 104 | 6.49e-26 | 100 |
Msa0385020 | AT4G10240.1 | 50.000 | 92 | 39 | 2 | 18 | 106 | 19 | 106 | 3.78e-23 | 91.7 |
Msa0385020 | AT2G21320.1 | 39.423 | 104 | 57 | 2 | 17 | 120 | 18 | 115 | 2.29e-17 | 76.6 |
Msa0385020 | AT4G38960.1 | 41.237 | 97 | 51 | 2 | 17 | 113 | 18 | 108 | 3.38e-17 | 76.6 |
Msa0385020 | AT4G38960.6 | 41.237 | 97 | 51 | 2 | 17 | 113 | 18 | 108 | 3.38e-17 | 76.6 |
Msa0385020 | AT5G15850.1 | 36.364 | 99 | 51 | 1 | 18 | 116 | 26 | 112 | 5.63e-12 | 64.3 |
Msa0385020 | AT2G24790.2 | 31.933 | 119 | 59 | 3 | 18 | 128 | 22 | 126 | 7.79e-12 | 62.8 |
Msa0385020 | AT2G24790.1 | 31.933 | 119 | 59 | 3 | 18 | 128 | 22 | 126 | 1.60e-11 | 62.8 |
Msa0385020 | AT3G02380.1 | 37.037 | 81 | 39 | 1 | 18 | 98 | 30 | 98 | 7.58e-11 | 60.8 |
Msa0385020 | AT5G24930.1 | 37.500 | 80 | 38 | 1 | 19 | 98 | 21 | 88 | 7.81e-11 | 60.8 |
Find 47 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGGTTGGGAGAATTATT+AGG | 0.172908 | 3_1:+88486849 | None:intergenic |
AAGAAACCTATTATGCTTCT+TGG | 0.240931 | 3_1:+88486552 | None:intergenic |
CCCCAAACTGCTGCTGAAAT+TGG | 0.248979 | 3_1:+88486183 | None:intergenic |
TATTCATGAGGAAAATATTC+TGG | 0.282344 | 3_1:-88486308 | Msa0385020:CDS |
CCAACTCTTCATGAAGAAAA+TGG | 0.301498 | 3_1:-88486493 | Msa0385020:CDS |
GAGAGAGAAGCGACGGTGTT+TGG | 0.360255 | 3_1:+88486878 | None:intergenic |
AACACACCAAGAAGCATAAT+AGG | 0.390006 | 3_1:-88486558 | Msa0385020:CDS |
CATAATAGGTTTCTTCTAAG+TGG | 0.399657 | 3_1:-88486544 | Msa0385020:CDS |
GAGTGTGATTTGAAGATTCA+TGG | 0.427331 | 3_1:-88486589 | Msa0385020:CDS |
TGAAGAGTTGGAGGAGGAGC+AGG | 0.431012 | 3_1:+88486505 | None:intergenic |
CTACAACAGCAGAATCATAT+TGG | 0.434122 | 3_1:-88486376 | Msa0385020:CDS |
AATGGTTGGGAGAATTATTA+GGG | 0.446787 | 3_1:+88486850 | None:intergenic |
TCATGAGAGGGAACAGAAGA+AGG | 0.454520 | 3_1:+88486400 | None:intergenic |
GAACAGAAGAAGGGGAATCA+AGG | 0.478942 | 3_1:+88486410 | None:intergenic |
ATAATAGGTTTCTTCTAAGT+GGG | 0.482873 | 3_1:-88486543 | Msa0385020:CDS |
TTCTCTAGCGAGAGCATGTG+TGG | 0.496184 | 3_1:-88486280 | Msa0385020:CDS |
TCACAGAGAGGGAAATGGTT+GGG | 0.504950 | 3_1:+88486837 | None:intergenic |
AAATATCACAGAGAGGGAAA+TGG | 0.517933 | 3_1:+88486832 | None:intergenic |
AGAGAAGCGACGGTGTTTGG+AGG | 0.521730 | 3_1:+88486881 | None:intergenic |
ATGGTGGACACGGTGGTCGC+AGG | 0.523492 | 3_1:+88486917 | None:intergenic |
CAAACTGCTGCTGAAATTGG+TGG | 0.525028 | 3_1:+88486186 | None:intergenic |
GTGGACACGGTGGTCGCAGG+TGG | 0.531543 | 3_1:+88486920 | None:intergenic |
GGTTGGGAGAATTATTAGGG+TGG | 0.538692 | 3_1:+88486853 | None:intergenic |
TGGAGGCGAGTTTGTTAGCA+TGG | 0.539793 | 3_1:+88486898 | None:intergenic |
CATGAGAGGGAACAGAAGAA+GGG | 0.544618 | 3_1:+88486401 | None:intergenic |
TGCTGTTGTAGTTCATGAGA+GGG | 0.552947 | 3_1:+88486388 | None:intergenic |
GTTTGTTAGCATGGTGGACA+CGG | 0.562165 | 3_1:+88486907 | None:intergenic |
TCTTCATGAAGAGTTGGAGG+AGG | 0.568381 | 3_1:+88486499 | None:intergenic |
CTTTGTTTGTAGGAAAGAAG+AGG | 0.568458 | 3_1:-88486652 | Msa0385020:intron |
CTGCTGTTGTAGTTCATGAG+AGG | 0.569968 | 3_1:+88486387 | None:intergenic |
GTCGCAGGTGGAGCATAAGA+CGG | 0.576267 | 3_1:+88486932 | None:intergenic |
AGTGCGACATCTGTAACAAA+CGG | 0.576581 | 3_1:-88486990 | Msa0385020:CDS |
TACTTGATAAACACTATCCC+AGG | 0.579028 | 3_1:-88486451 | Msa0385020:intron |
GAATAATACAGTGGTGCTTG+AGG | 0.582637 | 3_1:+88486247 | None:intergenic |
CGACATCTGTAACAAACGGC+AGG | 0.587499 | 3_1:-88486986 | Msa0385020:CDS |
ATCACAGAGAGGGAAATGGT+TGG | 0.589033 | 3_1:+88486836 | None:intergenic |
GTTTGTTACAGATGTCGCAC+TGG | 0.600679 | 3_1:+88486992 | None:intergenic |
TCTCTAGCGAGAGCATGTGT+GGG | 0.602430 | 3_1:-88486279 | Msa0385020:CDS |
CGAGGCAAATATCACAGAGA+GGG | 0.613147 | 3_1:+88486826 | None:intergenic |
ATGAGAGGGAACAGAAGAAG+GGG | 0.616850 | 3_1:+88486402 | None:intergenic |
GCATAAGACGGCTTCATCCG+CGG | 0.622218 | 3_1:+88486944 | None:intergenic |
GGTGGTTGAGAGAGAAGCGA+CGG | 0.648653 | 3_1:+88486871 | None:intergenic |
TGTTAATTATCATATTCATG+AGG | 0.653612 | 3_1:-88486320 | Msa0385020:CDS |
AGGCGAGTTTGTTAGCATGG+TGG | 0.655308 | 3_1:+88486901 | None:intergenic |
TCTTTATTCTGCACGCACCG+CGG | 0.662716 | 3_1:-88486961 | Msa0385020:CDS |
TGTTAGCATGGTGGACACGG+TGG | 0.691209 | 3_1:+88486910 | None:intergenic |
ACGAGGCAAATATCACAGAG+AGG | 0.701262 | 3_1:+88486825 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACATAAAAGAATGAATAT+TGG | + | chr3_1:88486397-88486416 | None:intergenic | 15.0% |
!! | ATACATAAAAGAATGAATAT+TGG | + | chr3_1:88486397-88486416 | None:intergenic | 15.0% |
!! | TCATTTGATTATATCAACTT+AGG | - | chr3_1:88486471-88486490 | Msa0385020:CDS | 20.0% |
!! | TGTTAATTATCATATTCATG+AGG | - | chr3_1:88486868-88486887 | Msa0385020:CDS | 20.0% |
!!! | ATTTTTTCAGAATAATACAG+TGG | + | chr3_1:88486953-88486972 | None:intergenic | 20.0% |
!!! | ACTGTATTATTCTGAAAAAA+TGG | - | chr3_1:88486952-88486971 | Msa0385020:CDS | 20.0% |
!! | TCATTTGATTATATCAACTT+AGG | - | chr3_1:88486471-88486490 | Msa0385020:CDS | 20.0% |
!! | TGTTAATTATCATATTCATG+AGG | - | chr3_1:88486868-88486887 | Msa0385020:CDS | 20.0% |
!!! | ATTTTTTCAGAATAATACAG+TGG | + | chr3_1:88486953-88486972 | None:intergenic | 20.0% |
!!! | ACTGTATTATTCTGAAAAAA+TGG | - | chr3_1:88486952-88486971 | Msa0385020:CDS | 20.0% |
! | ATAATAGGTTTCTTCTAAGT+GGG | - | chr3_1:88486645-88486664 | Msa0385020:intron | 25.0% |
! | TATTCATGAGGAAAATATTC+TGG | - | chr3_1:88486880-88486899 | Msa0385020:CDS | 25.0% |
! | ATAATAGGTTTCTTCTAAGT+GGG | - | chr3_1:88486645-88486664 | Msa0385020:intron | 25.0% |
! | TATTCATGAGGAAAATATTC+TGG | - | chr3_1:88486880-88486899 | Msa0385020:CDS | 25.0% |
AATGGTTGGGAGAATTATTA+GGG | + | chr3_1:88486341-88486360 | None:intergenic | 30.0% | |
AAATGGTTGGGAGAATTATT+AGG | + | chr3_1:88486342-88486361 | None:intergenic | 30.0% | |
! | GAGTTTGTTTCTTTGTTTGT+AGG | - | chr3_1:88486526-88486545 | Msa0385020:CDS | 30.0% |
!!! | AAGAGGTTTTGTTTTTTGTC+AGG | - | chr3_1:88486553-88486572 | Msa0385020:CDS | 30.0% |
AAGAAACCTATTATGCTTCT+TGG | + | chr3_1:88486639-88486658 | None:intergenic | 30.0% | |
CATAATAGGTTTCTTCTAAG+TGG | - | chr3_1:88486644-88486663 | Msa0385020:intron | 30.0% | |
AATGGTTGGGAGAATTATTA+GGG | + | chr3_1:88486341-88486360 | None:intergenic | 30.0% | |
AAATGGTTGGGAGAATTATT+AGG | + | chr3_1:88486342-88486361 | None:intergenic | 30.0% | |
! | GAGTTTGTTTCTTTGTTTGT+AGG | - | chr3_1:88486526-88486545 | Msa0385020:CDS | 30.0% |
!!! | AAGAGGTTTTGTTTTTTGTC+AGG | - | chr3_1:88486553-88486572 | Msa0385020:CDS | 30.0% |
AAGAAACCTATTATGCTTCT+TGG | + | chr3_1:88486639-88486658 | None:intergenic | 30.0% | |
CATAATAGGTTTCTTCTAAG+TGG | - | chr3_1:88486644-88486663 | Msa0385020:intron | 30.0% | |
AAATATCACAGAGAGGGAAA+TGG | + | chr3_1:88486359-88486378 | None:intergenic | 35.0% | |
GAATATTGGAGAGAATTACG+AGG | + | chr3_1:88486383-88486402 | None:intergenic | 35.0% | |
! | CTTTGTTTGTAGGAAAGAAG+AGG | - | chr3_1:88486536-88486555 | Msa0385020:CDS | 35.0% |
GAGTGTGATTTGAAGATTCA+TGG | - | chr3_1:88486599-88486618 | Msa0385020:CDS | 35.0% | |
! | AACACACCAAGAAGCATAAT+AGG | - | chr3_1:88486630-88486649 | Msa0385020:CDS | 35.0% |
! | TTTTCTTCATGAAGAGTTGG+AGG | + | chr3_1:88486695-88486714 | None:intergenic | 35.0% |
! | CCATTTTCTTCATGAAGAGT+TGG | + | chr3_1:88486698-88486717 | None:intergenic | 35.0% |
CCAACTCTTCATGAAGAAAA+TGG | - | chr3_1:88486695-88486714 | Msa0385020:intron | 35.0% | |
TACTTGATAAACACTATCCC+AGG | - | chr3_1:88486737-88486756 | Msa0385020:intron | 35.0% | |
AATCTTCAAACTTCCAACCT+GGG | + | chr3_1:88486757-88486776 | None:intergenic | 35.0% | |
AAATCTTCAAACTTCCAACC+TGG | + | chr3_1:88486758-88486777 | None:intergenic | 35.0% | |
CTACAACAGCAGAATCATAT+TGG | - | chr3_1:88486812-88486831 | Msa0385020:intron | 35.0% | |
AAATATCACAGAGAGGGAAA+TGG | + | chr3_1:88486359-88486378 | None:intergenic | 35.0% | |
GAATATTGGAGAGAATTACG+AGG | + | chr3_1:88486383-88486402 | None:intergenic | 35.0% | |
! | CTTTGTTTGTAGGAAAGAAG+AGG | - | chr3_1:88486536-88486555 | Msa0385020:CDS | 35.0% |
GAGTGTGATTTGAAGATTCA+TGG | - | chr3_1:88486599-88486618 | Msa0385020:CDS | 35.0% | |
! | AACACACCAAGAAGCATAAT+AGG | - | chr3_1:88486630-88486649 | Msa0385020:CDS | 35.0% |
! | TTTTCTTCATGAAGAGTTGG+AGG | + | chr3_1:88486695-88486714 | None:intergenic | 35.0% |
! | CCATTTTCTTCATGAAGAGT+TGG | + | chr3_1:88486698-88486717 | None:intergenic | 35.0% |
CCAACTCTTCATGAAGAAAA+TGG | - | chr3_1:88486695-88486714 | Msa0385020:intron | 35.0% | |
TACTTGATAAACACTATCCC+AGG | - | chr3_1:88486737-88486756 | Msa0385020:intron | 35.0% | |
AATCTTCAAACTTCCAACCT+GGG | + | chr3_1:88486757-88486776 | None:intergenic | 35.0% | |
AAATCTTCAAACTTCCAACC+TGG | + | chr3_1:88486758-88486777 | None:intergenic | 35.0% | |
CTACAACAGCAGAATCATAT+TGG | - | chr3_1:88486812-88486831 | Msa0385020:intron | 35.0% | |
AGTGCGACATCTGTAACAAA+CGG | - | chr3_1:88486198-88486217 | Msa0385020:CDS | 40.0% | |
TGATAAACACTATCCCAGGT+TGG | - | chr3_1:88486741-88486760 | Msa0385020:intron | 40.0% | |
TGCTGTTGTAGTTCATGAGA+GGG | + | chr3_1:88486803-88486822 | None:intergenic | 40.0% | |
GAATAATACAGTGGTGCTTG+AGG | + | chr3_1:88486944-88486963 | None:intergenic | 40.0% | |
AGTGCGACATCTGTAACAAA+CGG | - | chr3_1:88486198-88486217 | Msa0385020:CDS | 40.0% | |
TGATAAACACTATCCCAGGT+TGG | - | chr3_1:88486741-88486760 | Msa0385020:intron | 40.0% | |
TGCTGTTGTAGTTCATGAGA+GGG | + | chr3_1:88486803-88486822 | None:intergenic | 40.0% | |
GAATAATACAGTGGTGCTTG+AGG | + | chr3_1:88486944-88486963 | None:intergenic | 40.0% | |
! | GTTTGTTACAGATGTCGCAC+TGG | + | chr3_1:88486199-88486218 | None:intergenic | 45.0% |
!! | GTTTGTTAGCATGGTGGACA+CGG | + | chr3_1:88486284-88486303 | None:intergenic | 45.0% |
GGTTGGGAGAATTATTAGGG+TGG | + | chr3_1:88486338-88486357 | None:intergenic | 45.0% | |
TCACAGAGAGGGAAATGGTT+GGG | + | chr3_1:88486354-88486373 | None:intergenic | 45.0% | |
ATCACAGAGAGGGAAATGGT+TGG | + | chr3_1:88486355-88486374 | None:intergenic | 45.0% | |
CGAGGCAAATATCACAGAGA+GGG | + | chr3_1:88486365-88486384 | None:intergenic | 45.0% | |
ACGAGGCAAATATCACAGAG+AGG | + | chr3_1:88486366-88486385 | None:intergenic | 45.0% | |
TCTTCATGAAGAGTTGGAGG+AGG | + | chr3_1:88486692-88486711 | None:intergenic | 45.0% | |
GAACAGAAGAAGGGGAATCA+AGG | + | chr3_1:88486781-88486800 | None:intergenic | 45.0% | |
ATGAGAGGGAACAGAAGAAG+GGG | + | chr3_1:88486789-88486808 | None:intergenic | 45.0% | |
CATGAGAGGGAACAGAAGAA+GGG | + | chr3_1:88486790-88486809 | None:intergenic | 45.0% | |
TCATGAGAGGGAACAGAAGA+AGG | + | chr3_1:88486791-88486810 | None:intergenic | 45.0% | |
CTGCTGTTGTAGTTCATGAG+AGG | + | chr3_1:88486804-88486823 | None:intergenic | 45.0% | |
! | GTTTGTTACAGATGTCGCAC+TGG | + | chr3_1:88486199-88486218 | None:intergenic | 45.0% |
!! | GTTTGTTAGCATGGTGGACA+CGG | + | chr3_1:88486284-88486303 | None:intergenic | 45.0% |
GGTTGGGAGAATTATTAGGG+TGG | + | chr3_1:88486338-88486357 | None:intergenic | 45.0% | |
TCACAGAGAGGGAAATGGTT+GGG | + | chr3_1:88486354-88486373 | None:intergenic | 45.0% | |
ATCACAGAGAGGGAAATGGT+TGG | + | chr3_1:88486355-88486374 | None:intergenic | 45.0% | |
CGAGGCAAATATCACAGAGA+GGG | + | chr3_1:88486365-88486384 | None:intergenic | 45.0% | |
ACGAGGCAAATATCACAGAG+AGG | + | chr3_1:88486366-88486385 | None:intergenic | 45.0% | |
TCTTCATGAAGAGTTGGAGG+AGG | + | chr3_1:88486692-88486711 | None:intergenic | 45.0% | |
GAACAGAAGAAGGGGAATCA+AGG | + | chr3_1:88486781-88486800 | None:intergenic | 45.0% | |
ATGAGAGGGAACAGAAGAAG+GGG | + | chr3_1:88486789-88486808 | None:intergenic | 45.0% | |
CATGAGAGGGAACAGAAGAA+GGG | + | chr3_1:88486790-88486809 | None:intergenic | 45.0% | |
TCATGAGAGGGAACAGAAGA+AGG | + | chr3_1:88486791-88486810 | None:intergenic | 45.0% | |
CTGCTGTTGTAGTTCATGAG+AGG | + | chr3_1:88486804-88486823 | None:intergenic | 45.0% | |
CGACATCTGTAACAAACGGC+AGG | - | chr3_1:88486202-88486221 | Msa0385020:CDS | 50.0% | |
TCTTTATTCTGCACGCACCG+CGG | - | chr3_1:88486227-88486246 | Msa0385020:CDS | 50.0% | |
!! | AGGCGAGTTTGTTAGCATGG+TGG | + | chr3_1:88486290-88486309 | None:intergenic | 50.0% |
!! | TGGAGGCGAGTTTGTTAGCA+TGG | + | chr3_1:88486293-88486312 | None:intergenic | 50.0% |
! | TTCTCTAGCGAGAGCATGTG+TGG | - | chr3_1:88486908-88486927 | Msa0385020:CDS | 50.0% |
! | TCTCTAGCGAGAGCATGTGT+GGG | - | chr3_1:88486909-88486928 | Msa0385020:CDS | 50.0% |
CGACATCTGTAACAAACGGC+AGG | - | chr3_1:88486202-88486221 | Msa0385020:CDS | 50.0% | |
TCTTTATTCTGCACGCACCG+CGG | - | chr3_1:88486227-88486246 | Msa0385020:CDS | 50.0% | |
!! | AGGCGAGTTTGTTAGCATGG+TGG | + | chr3_1:88486290-88486309 | None:intergenic | 50.0% |
!! | TGGAGGCGAGTTTGTTAGCA+TGG | + | chr3_1:88486293-88486312 | None:intergenic | 50.0% |
! | TTCTCTAGCGAGAGCATGTG+TGG | - | chr3_1:88486908-88486927 | Msa0385020:CDS | 50.0% |
! | TCTCTAGCGAGAGCATGTGT+GGG | - | chr3_1:88486909-88486928 | Msa0385020:CDS | 50.0% |
GCATAAGACGGCTTCATCCG+CGG | + | chr3_1:88486247-88486266 | None:intergenic | 55.0% | |
GTCGCAGGTGGAGCATAAGA+CGG | + | chr3_1:88486259-88486278 | None:intergenic | 55.0% | |
!! | TGTTAGCATGGTGGACACGG+TGG | + | chr3_1:88486281-88486300 | None:intergenic | 55.0% |
AGAGAAGCGACGGTGTTTGG+AGG | + | chr3_1:88486310-88486329 | None:intergenic | 55.0% | |
GAGAGAGAAGCGACGGTGTT+TGG | + | chr3_1:88486313-88486332 | None:intergenic | 55.0% | |
GGTGGTTGAGAGAGAAGCGA+CGG | + | chr3_1:88486320-88486339 | None:intergenic | 55.0% | |
TGAAGAGTTGGAGGAGGAGC+AGG | + | chr3_1:88486686-88486705 | None:intergenic | 55.0% | |
GCATAAGACGGCTTCATCCG+CGG | + | chr3_1:88486247-88486266 | None:intergenic | 55.0% | |
GTCGCAGGTGGAGCATAAGA+CGG | + | chr3_1:88486259-88486278 | None:intergenic | 55.0% | |
!! | TGTTAGCATGGTGGACACGG+TGG | + | chr3_1:88486281-88486300 | None:intergenic | 55.0% |
AGAGAAGCGACGGTGTTTGG+AGG | + | chr3_1:88486310-88486329 | None:intergenic | 55.0% | |
GAGAGAGAAGCGACGGTGTT+TGG | + | chr3_1:88486313-88486332 | None:intergenic | 55.0% | |
GGTGGTTGAGAGAGAAGCGA+CGG | + | chr3_1:88486320-88486339 | None:intergenic | 55.0% | |
TGAAGAGTTGGAGGAGGAGC+AGG | + | chr3_1:88486686-88486705 | None:intergenic | 55.0% | |
!! | ATGGTGGACACGGTGGTCGC+AGG | + | chr3_1:88486274-88486293 | None:intergenic | 65.0% |
!! | ATGGTGGACACGGTGGTCGC+AGG | + | chr3_1:88486274-88486293 | None:intergenic | 65.0% |
GTGGACACGGTGGTCGCAGG+TGG | + | chr3_1:88486271-88486290 | None:intergenic | 70.0% | |
GTGGACACGGTGGTCGCAGG+TGG | + | chr3_1:88486271-88486290 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 88486195 | 88487015 | 88486195 | ID=Msa0385020;Name=Msa0385020 |
chr3_1 | mRNA | 88486195 | 88487015 | 88486195 | ID=Msa0385020-mRNA-1;Parent=Msa0385020;Name=Msa0385020-mRNA-1;_AED=0.04;_eAED=0.11;_QI=0|0|0|1|0.5|0|3|0|214 |
chr3_1 | exon | 88486827 | 88487015 | 88486827 | ID=Msa0385020-mRNA-1:exon:23917;Parent=Msa0385020-mRNA-1 |
chr3_1 | exon | 88486452 | 88486662 | 88486452 | ID=Msa0385020-mRNA-1:exon:23916;Parent=Msa0385020-mRNA-1 |
chr3_1 | exon | 88486195 | 88486436 | 88486195 | ID=Msa0385020-mRNA-1:exon:23915;Parent=Msa0385020-mRNA-1 |
chr3_1 | CDS | 88486827 | 88487015 | 88486827 | ID=Msa0385020-mRNA-1:cds;Parent=Msa0385020-mRNA-1 |
chr3_1 | CDS | 88486452 | 88486662 | 88486452 | ID=Msa0385020-mRNA-1:cds;Parent=Msa0385020-mRNA-1 |
chr3_1 | CDS | 88486195 | 88486436 | 88486195 | ID=Msa0385020-mRNA-1:cds;Parent=Msa0385020-mRNA-1 |
Gene Sequence |
Protein sequence |