Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385080 | XP_003603724.1 | 84.615 | 221 | 19 | 4 | 1 | 215 | 1 | 212 | 1.11e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385080 | sp|Q9LQZ7|BBX21_ARATH | 39.922 | 258 | 88 | 7 | 1 | 194 | 1 | 255 | 2.97e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385080 | G7J4N4 | 84.615 | 221 | 19 | 4 | 1 | 215 | 1 | 212 | 5.29e-129 | 372 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0385080 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385020 | Msa0385080 | 0.952913 | 8.662275e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385080 | MtrunA17_Chr3g0142221 | 84.615 | 221 | 19 | 4 | 1 | 215 | 1 | 212 | 1.02e-132 | 372 |
| Msa0385080 | MtrunA17_Chr1g0155811 | 47.638 | 254 | 74 | 10 | 1 | 213 | 1 | 236 | 2.09e-59 | 187 |
| Msa0385080 | MtrunA17_Chr3g0145061 | 66.667 | 114 | 36 | 1 | 1 | 114 | 1 | 112 | 2.37e-52 | 168 |
| Msa0385080 | MtrunA17_Chr4g0035651 | 45.614 | 171 | 56 | 2 | 1 | 136 | 1 | 169 | 1.21e-46 | 153 |
| Msa0385080 | MtrunA17_Chr2g0314671 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 1.46e-36 | 129 |
| Msa0385080 | MtrunA17_Chr2g0329511 | 34.956 | 226 | 123 | 5 | 1 | 210 | 1 | 218 | 2.31e-34 | 122 |
| Msa0385080 | MtrunA17_Chr4g0033641 | 35.922 | 206 | 120 | 3 | 1 | 198 | 1 | 202 | 2.03e-33 | 120 |
| Msa0385080 | MtrunA17_Chr5g0405151 | 33.333 | 183 | 106 | 5 | 1 | 181 | 1 | 169 | 1.92e-24 | 95.1 |
| Msa0385080 | MtrunA17_Chr1g0150471 | 39.394 | 99 | 48 | 1 | 5 | 103 | 6 | 92 | 3.81e-17 | 78.2 |
| Msa0385080 | MtrunA17_Chr7g0220721 | 34.821 | 112 | 61 | 1 | 5 | 116 | 26 | 125 | 2.09e-16 | 77.0 |
| Msa0385080 | MtrunA17_Chr3g0136701 | 37.374 | 99 | 50 | 1 | 5 | 103 | 6 | 92 | 7.46e-15 | 71.6 |
| Msa0385080 | MtrunA17_Chr4g0072871 | 36.842 | 95 | 48 | 1 | 5 | 99 | 22 | 104 | 3.60e-14 | 70.5 |
| Msa0385080 | MtrunA17_Chr5g0429341 | 31.313 | 99 | 56 | 1 | 1 | 99 | 1 | 87 | 1.86e-12 | 65.5 |
| Msa0385080 | MtrunA17_Chr3g0120711 | 31.200 | 125 | 70 | 3 | 1 | 125 | 1 | 109 | 2.11e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385080 | AT1G75540.1 | 39.922 | 258 | 88 | 7 | 1 | 194 | 1 | 255 | 3.01e-52 | 171 |
| Msa0385080 | AT4G39070.1 | 54.167 | 144 | 63 | 2 | 1 | 143 | 1 | 142 | 1.42e-45 | 151 |
| Msa0385080 | AT1G78600.1 | 53.271 | 107 | 47 | 1 | 1 | 107 | 1 | 104 | 1.80e-36 | 130 |
| Msa0385080 | AT1G78600.2 | 53.271 | 107 | 47 | 1 | 1 | 107 | 1 | 104 | 3.98e-36 | 129 |
| Msa0385080 | AT1G06040.2 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 5.19e-36 | 125 |
| Msa0385080 | AT2G31380.1 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 1.52e-35 | 125 |
| Msa0385080 | AT1G06040.1 | 54.206 | 107 | 46 | 1 | 1 | 107 | 1 | 104 | 4.29e-35 | 125 |
| Msa0385080 | AT4G10240.1 | 48.182 | 110 | 50 | 2 | 1 | 107 | 1 | 106 | 1.05e-30 | 111 |
| Msa0385080 | AT2G21320.1 | 41.322 | 121 | 65 | 2 | 1 | 121 | 1 | 115 | 2.80e-24 | 94.7 |
| Msa0385080 | AT4G38960.1 | 42.982 | 114 | 59 | 2 | 1 | 114 | 1 | 108 | 3.79e-24 | 94.7 |
| Msa0385080 | AT4G38960.6 | 42.982 | 114 | 59 | 2 | 1 | 114 | 1 | 108 | 3.79e-24 | 94.7 |
| Msa0385080 | AT2G24790.2 | 33.835 | 133 | 66 | 3 | 5 | 129 | 8 | 126 | 4.61e-17 | 77.0 |
| Msa0385080 | AT2G24790.1 | 33.835 | 133 | 66 | 3 | 5 | 129 | 8 | 126 | 1.53e-16 | 76.6 |
| Msa0385080 | AT4G38960.3 | 31.210 | 157 | 59 | 3 | 1 | 114 | 1 | 151 | 2.96e-16 | 75.1 |
| Msa0385080 | AT5G15850.1 | 35.398 | 113 | 61 | 1 | 5 | 117 | 12 | 112 | 1.06e-15 | 75.1 |
| Msa0385080 | AT5G24930.1 | 36.364 | 99 | 51 | 1 | 5 | 103 | 6 | 92 | 5.57e-15 | 73.2 |
| Msa0385080 | AT3G02380.1 | 35.789 | 95 | 49 | 1 | 5 | 99 | 16 | 98 | 2.16e-14 | 71.2 |
| Msa0385080 | AT1G28050.1 | 37.500 | 104 | 53 | 1 | 2 | 105 | 6 | 97 | 1.62e-13 | 68.9 |
| Msa0385080 | AT2G33500.2 | 35.922 | 103 | 54 | 1 | 3 | 105 | 10 | 100 | 1.92e-13 | 68.9 |
| Msa0385080 | AT2G33500.1 | 35.922 | 103 | 54 | 1 | 3 | 105 | 10 | 100 | 2.05e-13 | 68.6 |
| Msa0385080 | AT5G15840.2 | 30.435 | 115 | 68 | 1 | 5 | 119 | 20 | 122 | 6.06e-13 | 66.6 |
| Msa0385080 | AT5G15840.1 | 32.632 | 95 | 52 | 1 | 5 | 99 | 20 | 102 | 1.12e-12 | 66.6 |
| Msa0385080 | AT2G47890.2 | 40.476 | 84 | 38 | 2 | 5 | 88 | 13 | 84 | 2.00e-11 | 62.0 |
| Msa0385080 | AT2G47890.3 | 40.476 | 84 | 38 | 2 | 5 | 88 | 13 | 84 | 2.11e-11 | 62.4 |
| Msa0385080 | AT2G47890.1 | 40.476 | 84 | 38 | 2 | 5 | 88 | 13 | 84 | 3.33e-11 | 62.0 |
Find 48 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGTTGGGAGAATTATT+AGG | 0.172908 | 3_1:+88527656 | None:intergenic |
| AAGAAACCTATTATGCTTCT+TGG | 0.240931 | 3_1:+88527359 | None:intergenic |
| CCCCAAACTGCTGCTGAAAT+TGG | 0.248979 | 3_1:+88526990 | None:intergenic |
| TATTCATGAGGAAAATATTC+TGG | 0.282344 | 3_1:-88527115 | Msa0385080:CDS |
| CCAACTCTTCATGAAGAAAA+TGG | 0.301498 | 3_1:-88527300 | Msa0385080:CDS |
| GAGAGAGAAGCGACGGTGTT+TGG | 0.360255 | 3_1:+88527685 | None:intergenic |
| AACACACCAAGAAGCATAAT+AGG | 0.390006 | 3_1:-88527365 | Msa0385080:CDS |
| CATAATAGGTTTCTTCTAAG+TGG | 0.399657 | 3_1:-88527351 | Msa0385080:CDS |
| GAGTGTGATTTGAAGATTCA+TGG | 0.427331 | 3_1:-88527396 | Msa0385080:CDS |
| TGAAGAGTTGGAGGAGGAGC+AGG | 0.431012 | 3_1:+88527312 | None:intergenic |
| CTACAACAGCAGAATCATAT+TGG | 0.434122 | 3_1:-88527183 | Msa0385080:CDS |
| AATGGTTGGGAGAATTATTA+GGG | 0.446787 | 3_1:+88527657 | None:intergenic |
| TCATGAGAGGGAACAGAAGA+AGG | 0.454520 | 3_1:+88527207 | None:intergenic |
| GTGGTCGCAGGTGGAGCATA+AGG | 0.456556 | 3_1:+88527736 | None:intergenic |
| GAACAGAAGAAGGGGATTCA+AGG | 0.477624 | 3_1:+88527217 | None:intergenic |
| ATAATAGGTTTCTTCTAAGT+GGG | 0.482873 | 3_1:-88527350 | Msa0385080:CDS |
| TTCTCTAGCGAGAGCATGTG+TGG | 0.496184 | 3_1:-88527087 | Msa0385080:CDS |
| TCACAGAGAGGGAAATGGTT+GGG | 0.504950 | 3_1:+88527644 | None:intergenic |
| AAATATCACAGAGAGGGAAA+TGG | 0.517933 | 3_1:+88527639 | None:intergenic |
| AGAGAAGCGACGGTGTTTGG+AGG | 0.521730 | 3_1:+88527688 | None:intergenic |
| ATGGTGGACACGGTGGTCGC+AGG | 0.523492 | 3_1:+88527724 | None:intergenic |
| CAAACTGCTGCTGAAATTGG+TGG | 0.525028 | 3_1:+88526993 | None:intergenic |
| GTGGACACGGTGGTCGCAGG+TGG | 0.531543 | 3_1:+88527727 | None:intergenic |
| GGTTGGGAGAATTATTAGGG+TGG | 0.538692 | 3_1:+88527660 | None:intergenic |
| TGGAGGCGAGTTTGTTAGCA+TGG | 0.539793 | 3_1:+88527705 | None:intergenic |
| CATGAGAGGGAACAGAAGAA+GGG | 0.544618 | 3_1:+88527208 | None:intergenic |
| TGCTGTTGTAGTTCATGAGA+GGG | 0.552947 | 3_1:+88527195 | None:intergenic |
| GTTTGTTAGCATGGTGGACA+CGG | 0.562165 | 3_1:+88527714 | None:intergenic |
| TCTTCATGAAGAGTTGGAGG+AGG | 0.568381 | 3_1:+88527306 | None:intergenic |
| CTTTGTTTGTAGGAAAGAAG+AGG | 0.568458 | 3_1:-88527459 | Msa0385080:intron |
| CTGCTGTTGTAGTTCATGAG+AGG | 0.569968 | 3_1:+88527194 | None:intergenic |
| GCATAAGGCGGCTTCATCCG+CGG | 0.570214 | 3_1:+88527751 | None:intergenic |
| AGTGCGACATCTGTAACAAA+CGG | 0.576581 | 3_1:-88527793 | Msa0385080:CDS |
| TACTTGATAAACACTATCCC+AGG | 0.579028 | 3_1:-88527258 | Msa0385080:intron |
| GAATAATACAGTGGTGCTTG+AGG | 0.582637 | 3_1:+88527054 | None:intergenic |
| CGACATCTGTAACAAACGGC+AGG | 0.587499 | 3_1:-88527789 | Msa0385080:CDS |
| ATCACAGAGAGGGAAATGGT+TGG | 0.589033 | 3_1:+88527643 | None:intergenic |
| GTTTGTTACAGATGTCGCAC+TGG | 0.600679 | 3_1:+88527795 | None:intergenic |
| TCTCTAGCGAGAGCATGTGT+GGG | 0.602430 | 3_1:-88527086 | Msa0385080:CDS |
| GTCGCAGGTGGAGCATAAGG+CGG | 0.608572 | 3_1:+88527739 | None:intergenic |
| CGAGGCAAATATCACAGAGA+GGG | 0.613147 | 3_1:+88527633 | None:intergenic |
| ATGAGAGGGAACAGAAGAAG+GGG | 0.616850 | 3_1:+88527209 | None:intergenic |
| GGTGGTTGAGAGAGAAGCGA+CGG | 0.648653 | 3_1:+88527678 | None:intergenic |
| TGTTAATTATCATATTCATG+AGG | 0.653612 | 3_1:-88527127 | Msa0385080:CDS |
| AGGCGAGTTTGTTAGCATGG+TGG | 0.655308 | 3_1:+88527708 | None:intergenic |
| TGTTAGCATGGTGGACACGG+TGG | 0.691209 | 3_1:+88527717 | None:intergenic |
| ACGAGGCAAATATCACAGAG+AGG | 0.701262 | 3_1:+88527632 | None:intergenic |
| GGCTTCTTTATTCTGCACCG+CGG | 0.708284 | 3_1:-88527768 | Msa0385080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAAAAGAATGAATAT+TGG | + | chr3_1:88527204-88527223 | None:intergenic | 15.0% |
| !! | ATACATAAAAGAATGAATAT+TGG | + | chr3_1:88527204-88527223 | None:intergenic | 15.0% |
| !! | TGTTAATTATCATATTCATG+AGG | - | chr3_1:88527675-88527694 | Msa0385080:CDS | 20.0% |
| !!! | ATTTTTTCAGAATAATACAG+TGG | + | chr3_1:88527760-88527779 | None:intergenic | 20.0% |
| !!! | ACTGTATTATTCTGAAAAAA+TGG | - | chr3_1:88527759-88527778 | Msa0385080:CDS | 20.0% |
| !! | TGTTAATTATCATATTCATG+AGG | - | chr3_1:88527675-88527694 | Msa0385080:CDS | 20.0% |
| !!! | ATTTTTTCAGAATAATACAG+TGG | + | chr3_1:88527760-88527779 | None:intergenic | 20.0% |
| !!! | ACTGTATTATTCTGAAAAAA+TGG | - | chr3_1:88527759-88527778 | Msa0385080:CDS | 20.0% |
| ! | ATAATAGGTTTCTTCTAAGT+GGG | - | chr3_1:88527452-88527471 | Msa0385080:intron | 25.0% |
| ! | TATTCATGAGGAAAATATTC+TGG | - | chr3_1:88527687-88527706 | Msa0385080:CDS | 25.0% |
| ! | ATAATAGGTTTCTTCTAAGT+GGG | - | chr3_1:88527452-88527471 | Msa0385080:intron | 25.0% |
| ! | TATTCATGAGGAAAATATTC+TGG | - | chr3_1:88527687-88527706 | Msa0385080:CDS | 25.0% |
| AATGGTTGGGAGAATTATTA+GGG | + | chr3_1:88527148-88527167 | None:intergenic | 30.0% | |
| AAATGGTTGGGAGAATTATT+AGG | + | chr3_1:88527149-88527168 | None:intergenic | 30.0% | |
| ! | GAGTTTGTTTCTTTGTTTGT+AGG | - | chr3_1:88527333-88527352 | Msa0385080:CDS | 30.0% |
| !!! | AAGAGGTTTTGTTTTTTGTC+AGG | - | chr3_1:88527360-88527379 | Msa0385080:CDS | 30.0% |
| AAGAAACCTATTATGCTTCT+TGG | + | chr3_1:88527446-88527465 | None:intergenic | 30.0% | |
| CATAATAGGTTTCTTCTAAG+TGG | - | chr3_1:88527451-88527470 | Msa0385080:intron | 30.0% | |
| AATGGTTGGGAGAATTATTA+GGG | + | chr3_1:88527148-88527167 | None:intergenic | 30.0% | |
| AAATGGTTGGGAGAATTATT+AGG | + | chr3_1:88527149-88527168 | None:intergenic | 30.0% | |
| ! | GAGTTTGTTTCTTTGTTTGT+AGG | - | chr3_1:88527333-88527352 | Msa0385080:CDS | 30.0% |
| !!! | AAGAGGTTTTGTTTTTTGTC+AGG | - | chr3_1:88527360-88527379 | Msa0385080:CDS | 30.0% |
| AAGAAACCTATTATGCTTCT+TGG | + | chr3_1:88527446-88527465 | None:intergenic | 30.0% | |
| CATAATAGGTTTCTTCTAAG+TGG | - | chr3_1:88527451-88527470 | Msa0385080:intron | 30.0% | |
| AAATATCACAGAGAGGGAAA+TGG | + | chr3_1:88527166-88527185 | None:intergenic | 35.0% | |
| GAATATTGGAGAGAATTACG+AGG | + | chr3_1:88527190-88527209 | None:intergenic | 35.0% | |
| ! | CTTTGTTTGTAGGAAAGAAG+AGG | - | chr3_1:88527343-88527362 | Msa0385080:CDS | 35.0% |
| GAGTGTGATTTGAAGATTCA+TGG | - | chr3_1:88527406-88527425 | Msa0385080:CDS | 35.0% | |
| ! | AACACACCAAGAAGCATAAT+AGG | - | chr3_1:88527437-88527456 | Msa0385080:CDS | 35.0% |
| ! | TTTTCTTCATGAAGAGTTGG+AGG | + | chr3_1:88527502-88527521 | None:intergenic | 35.0% |
| ! | CCATTTTCTTCATGAAGAGT+TGG | + | chr3_1:88527505-88527524 | None:intergenic | 35.0% |
| CCAACTCTTCATGAAGAAAA+TGG | - | chr3_1:88527502-88527521 | Msa0385080:intron | 35.0% | |
| TACTTGATAAACACTATCCC+AGG | - | chr3_1:88527544-88527563 | Msa0385080:intron | 35.0% | |
| AATCTTCAAACTTCCAACCT+GGG | + | chr3_1:88527564-88527583 | None:intergenic | 35.0% | |
| AAATCTTCAAACTTCCAACC+TGG | + | chr3_1:88527565-88527584 | None:intergenic | 35.0% | |
| CTACAACAGCAGAATCATAT+TGG | - | chr3_1:88527619-88527638 | Msa0385080:intron | 35.0% | |
| AAATATCACAGAGAGGGAAA+TGG | + | chr3_1:88527166-88527185 | None:intergenic | 35.0% | |
| GAATATTGGAGAGAATTACG+AGG | + | chr3_1:88527190-88527209 | None:intergenic | 35.0% | |
| ! | CTTTGTTTGTAGGAAAGAAG+AGG | - | chr3_1:88527343-88527362 | Msa0385080:CDS | 35.0% |
| GAGTGTGATTTGAAGATTCA+TGG | - | chr3_1:88527406-88527425 | Msa0385080:CDS | 35.0% | |
| ! | AACACACCAAGAAGCATAAT+AGG | - | chr3_1:88527437-88527456 | Msa0385080:CDS | 35.0% |
| ! | TTTTCTTCATGAAGAGTTGG+AGG | + | chr3_1:88527502-88527521 | None:intergenic | 35.0% |
| ! | CCATTTTCTTCATGAAGAGT+TGG | + | chr3_1:88527505-88527524 | None:intergenic | 35.0% |
| CCAACTCTTCATGAAGAAAA+TGG | - | chr3_1:88527502-88527521 | Msa0385080:intron | 35.0% | |
| TACTTGATAAACACTATCCC+AGG | - | chr3_1:88527544-88527563 | Msa0385080:intron | 35.0% | |
| AATCTTCAAACTTCCAACCT+GGG | + | chr3_1:88527564-88527583 | None:intergenic | 35.0% | |
| AAATCTTCAAACTTCCAACC+TGG | + | chr3_1:88527565-88527584 | None:intergenic | 35.0% | |
| CTACAACAGCAGAATCATAT+TGG | - | chr3_1:88527619-88527638 | Msa0385080:intron | 35.0% | |
| AGTGCGACATCTGTAACAAA+CGG | - | chr3_1:88527009-88527028 | Msa0385080:CDS | 40.0% | |
| TGATAAACACTATCCCAGGT+TGG | - | chr3_1:88527548-88527567 | Msa0385080:intron | 40.0% | |
| TGCTGTTGTAGTTCATGAGA+GGG | + | chr3_1:88527610-88527629 | None:intergenic | 40.0% | |
| GAATAATACAGTGGTGCTTG+AGG | + | chr3_1:88527751-88527770 | None:intergenic | 40.0% | |
| AGTGCGACATCTGTAACAAA+CGG | - | chr3_1:88527009-88527028 | Msa0385080:CDS | 40.0% | |
| TGATAAACACTATCCCAGGT+TGG | - | chr3_1:88527548-88527567 | Msa0385080:intron | 40.0% | |
| TGCTGTTGTAGTTCATGAGA+GGG | + | chr3_1:88527610-88527629 | None:intergenic | 40.0% | |
| GAATAATACAGTGGTGCTTG+AGG | + | chr3_1:88527751-88527770 | None:intergenic | 40.0% | |
| ! | GTTTGTTACAGATGTCGCAC+TGG | + | chr3_1:88527010-88527029 | None:intergenic | 45.0% |
| !! | GTTTGTTAGCATGGTGGACA+CGG | + | chr3_1:88527091-88527110 | None:intergenic | 45.0% |
| GGTTGGGAGAATTATTAGGG+TGG | + | chr3_1:88527145-88527164 | None:intergenic | 45.0% | |
| TCACAGAGAGGGAAATGGTT+GGG | + | chr3_1:88527161-88527180 | None:intergenic | 45.0% | |
| ATCACAGAGAGGGAAATGGT+TGG | + | chr3_1:88527162-88527181 | None:intergenic | 45.0% | |
| CGAGGCAAATATCACAGAGA+GGG | + | chr3_1:88527172-88527191 | None:intergenic | 45.0% | |
| ACGAGGCAAATATCACAGAG+AGG | + | chr3_1:88527173-88527192 | None:intergenic | 45.0% | |
| TCTTCATGAAGAGTTGGAGG+AGG | + | chr3_1:88527499-88527518 | None:intergenic | 45.0% | |
| GAACAGAAGAAGGGGATTCA+AGG | + | chr3_1:88527588-88527607 | None:intergenic | 45.0% | |
| ATGAGAGGGAACAGAAGAAG+GGG | + | chr3_1:88527596-88527615 | None:intergenic | 45.0% | |
| CATGAGAGGGAACAGAAGAA+GGG | + | chr3_1:88527597-88527616 | None:intergenic | 45.0% | |
| TCATGAGAGGGAACAGAAGA+AGG | + | chr3_1:88527598-88527617 | None:intergenic | 45.0% | |
| CTGCTGTTGTAGTTCATGAG+AGG | + | chr3_1:88527611-88527630 | None:intergenic | 45.0% | |
| ! | GTTTGTTACAGATGTCGCAC+TGG | + | chr3_1:88527010-88527029 | None:intergenic | 45.0% |
| !! | GTTTGTTAGCATGGTGGACA+CGG | + | chr3_1:88527091-88527110 | None:intergenic | 45.0% |
| GGTTGGGAGAATTATTAGGG+TGG | + | chr3_1:88527145-88527164 | None:intergenic | 45.0% | |
| TCACAGAGAGGGAAATGGTT+GGG | + | chr3_1:88527161-88527180 | None:intergenic | 45.0% | |
| ATCACAGAGAGGGAAATGGT+TGG | + | chr3_1:88527162-88527181 | None:intergenic | 45.0% | |
| CGAGGCAAATATCACAGAGA+GGG | + | chr3_1:88527172-88527191 | None:intergenic | 45.0% | |
| ACGAGGCAAATATCACAGAG+AGG | + | chr3_1:88527173-88527192 | None:intergenic | 45.0% | |
| TCTTCATGAAGAGTTGGAGG+AGG | + | chr3_1:88527499-88527518 | None:intergenic | 45.0% | |
| GAACAGAAGAAGGGGATTCA+AGG | + | chr3_1:88527588-88527607 | None:intergenic | 45.0% | |
| ATGAGAGGGAACAGAAGAAG+GGG | + | chr3_1:88527596-88527615 | None:intergenic | 45.0% | |
| CATGAGAGGGAACAGAAGAA+GGG | + | chr3_1:88527597-88527616 | None:intergenic | 45.0% | |
| TCATGAGAGGGAACAGAAGA+AGG | + | chr3_1:88527598-88527617 | None:intergenic | 45.0% | |
| CTGCTGTTGTAGTTCATGAG+AGG | + | chr3_1:88527611-88527630 | None:intergenic | 45.0% | |
| CGACATCTGTAACAAACGGC+AGG | - | chr3_1:88527013-88527032 | Msa0385080:CDS | 50.0% | |
| GGCTTCTTTATTCTGCACCG+CGG | - | chr3_1:88527034-88527053 | Msa0385080:CDS | 50.0% | |
| !! | AGGCGAGTTTGTTAGCATGG+TGG | + | chr3_1:88527097-88527116 | None:intergenic | 50.0% |
| !! | TGGAGGCGAGTTTGTTAGCA+TGG | + | chr3_1:88527100-88527119 | None:intergenic | 50.0% |
| ! | TTCTCTAGCGAGAGCATGTG+TGG | - | chr3_1:88527715-88527734 | Msa0385080:CDS | 50.0% |
| ! | TCTCTAGCGAGAGCATGTGT+GGG | - | chr3_1:88527716-88527735 | Msa0385080:CDS | 50.0% |
| CGACATCTGTAACAAACGGC+AGG | - | chr3_1:88527013-88527032 | Msa0385080:CDS | 50.0% | |
| GGCTTCTTTATTCTGCACCG+CGG | - | chr3_1:88527034-88527053 | Msa0385080:CDS | 50.0% | |
| !! | AGGCGAGTTTGTTAGCATGG+TGG | + | chr3_1:88527097-88527116 | None:intergenic | 50.0% |
| !! | TGGAGGCGAGTTTGTTAGCA+TGG | + | chr3_1:88527100-88527119 | None:intergenic | 50.0% |
| ! | TTCTCTAGCGAGAGCATGTG+TGG | - | chr3_1:88527715-88527734 | Msa0385080:CDS | 50.0% |
| ! | TCTCTAGCGAGAGCATGTGT+GGG | - | chr3_1:88527716-88527735 | Msa0385080:CDS | 50.0% |
| !! | TGTTAGCATGGTGGACACGG+TGG | + | chr3_1:88527088-88527107 | None:intergenic | 55.0% |
| AGAGAAGCGACGGTGTTTGG+AGG | + | chr3_1:88527117-88527136 | None:intergenic | 55.0% | |
| GAGAGAGAAGCGACGGTGTT+TGG | + | chr3_1:88527120-88527139 | None:intergenic | 55.0% | |
| GGTGGTTGAGAGAGAAGCGA+CGG | + | chr3_1:88527127-88527146 | None:intergenic | 55.0% | |
| TGAAGAGTTGGAGGAGGAGC+AGG | + | chr3_1:88527493-88527512 | None:intergenic | 55.0% | |
| !! | TGTTAGCATGGTGGACACGG+TGG | + | chr3_1:88527088-88527107 | None:intergenic | 55.0% |
| AGAGAAGCGACGGTGTTTGG+AGG | + | chr3_1:88527117-88527136 | None:intergenic | 55.0% | |
| GAGAGAGAAGCGACGGTGTT+TGG | + | chr3_1:88527120-88527139 | None:intergenic | 55.0% | |
| GGTGGTTGAGAGAGAAGCGA+CGG | + | chr3_1:88527127-88527146 | None:intergenic | 55.0% | |
| TGAAGAGTTGGAGGAGGAGC+AGG | + | chr3_1:88527493-88527512 | None:intergenic | 55.0% | |
| GCATAAGGCGGCTTCATCCG+CGG | + | chr3_1:88527054-88527073 | None:intergenic | 60.0% | |
| GTCGCAGGTGGAGCATAAGG+CGG | + | chr3_1:88527066-88527085 | None:intergenic | 60.0% | |
| GTGGTCGCAGGTGGAGCATA+AGG | + | chr3_1:88527069-88527088 | None:intergenic | 60.0% | |
| GCATAAGGCGGCTTCATCCG+CGG | + | chr3_1:88527054-88527073 | None:intergenic | 60.0% | |
| GTCGCAGGTGGAGCATAAGG+CGG | + | chr3_1:88527066-88527085 | None:intergenic | 60.0% | |
| GTGGTCGCAGGTGGAGCATA+AGG | + | chr3_1:88527069-88527088 | None:intergenic | 60.0% | |
| !! | ATGGTGGACACGGTGGTCGC+AGG | + | chr3_1:88527081-88527100 | None:intergenic | 65.0% |
| !! | ATGGTGGACACGGTGGTCGC+AGG | + | chr3_1:88527081-88527100 | None:intergenic | 65.0% |
| GTGGACACGGTGGTCGCAGG+TGG | + | chr3_1:88527078-88527097 | None:intergenic | 70.0% | |
| GTGGACACGGTGGTCGCAGG+TGG | + | chr3_1:88527078-88527097 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88526999 | 88527825 | 88526999 | ID=Msa0385080;Name=Msa0385080 |
| chr3_1 | mRNA | 88526999 | 88527825 | 88526999 | ID=Msa0385080-mRNA-1;Parent=Msa0385080;Name=Msa0385080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0.5|0.33|3|0|216 |
| chr3_1 | exon | 88527634 | 88527825 | 88527634 | ID=Msa0385080-mRNA-1:exon:23914;Parent=Msa0385080-mRNA-1 |
| chr3_1 | exon | 88527259 | 88527469 | 88527259 | ID=Msa0385080-mRNA-1:exon:23913;Parent=Msa0385080-mRNA-1 |
| chr3_1 | exon | 88526999 | 88527243 | 88526999 | ID=Msa0385080-mRNA-1:exon:23912;Parent=Msa0385080-mRNA-1 |
| chr3_1 | CDS | 88527634 | 88527825 | 88527634 | ID=Msa0385080-mRNA-1:cds;Parent=Msa0385080-mRNA-1 |
| chr3_1 | CDS | 88527259 | 88527469 | 88527259 | ID=Msa0385080-mRNA-1:cds;Parent=Msa0385080-mRNA-1 |
| chr3_1 | CDS | 88526999 | 88527243 | 88526999 | ID=Msa0385080-mRNA-1:cds;Parent=Msa0385080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
