AlfalfaGEDB | Msa0385080

M. sativa cultivar zhongmu-4 / Msa0385080

KEGG: -
GO: GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00643.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385080	XP_003603724.1	84.615	221	19	4	1	215	1	212	1.11e-128	372

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385080	sp\|Q9LQZ7\|BBX21_ARATH	39.922	258	88	7	1	194	1	255	2.97e-51	171

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385080	G7J4N4	84.615	221	19	4	1	215	1	212	5.29e-129	372

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TFs/TRs:

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Gene ID	Type	Classification
Msa0385080	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0385020	Msa0385080	0.952913	8.662275e-111	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385080	MtrunA17_Chr3g0142221	84.615	221	19	4	1	215	1	212	1.02e-132	372
Msa0385080	MtrunA17_Chr1g0155811	47.638	254	74	10	1	213	1	236	2.09e-59	187
Msa0385080	MtrunA17_Chr3g0145061	66.667	114	36	1	1	114	1	112	2.37e-52	168
Msa0385080	MtrunA17_Chr4g0035651	45.614	171	56	2	1	136	1	169	1.21e-46	153
Msa0385080	MtrunA17_Chr2g0314671	54.206	107	46	1	1	107	1	104	1.46e-36	129
Msa0385080	MtrunA17_Chr2g0329511	34.956	226	123	5	1	210	1	218	2.31e-34	122
Msa0385080	MtrunA17_Chr4g0033641	35.922	206	120	3	1	198	1	202	2.03e-33	120
Msa0385080	MtrunA17_Chr5g0405151	33.333	183	106	5	1	181	1	169	1.92e-24	95.1
Msa0385080	MtrunA17_Chr1g0150471	39.394	99	48	1	5	103	6	92	3.81e-17	78.2
Msa0385080	MtrunA17_Chr7g0220721	34.821	112	61	1	5	116	26	125	2.09e-16	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385080	AT1G75540.1	39.922	258	88	7	1	194	1	255	3.01e-52	171
Msa0385080	AT4G39070.1	54.167	144	63	2	1	143	1	142	1.42e-45	151
Msa0385080	AT1G78600.1	53.271	107	47	1	1	107	1	104	1.80e-36	130
Msa0385080	AT1G78600.2	53.271	107	47	1	1	107	1	104	3.98e-36	129
Msa0385080	AT1G06040.2	54.206	107	46	1	1	107	1	104	5.19e-36	125
Msa0385080	AT2G31380.1	54.206	107	46	1	1	107	1	104	1.52e-35	125
Msa0385080	AT1G06040.1	54.206	107	46	1	1	107	1	104	4.29e-35	125
Msa0385080	AT4G10240.1	48.182	110	50	2	1	107	1	106	1.05e-30	111
Msa0385080	AT2G21320.1	41.322	121	65	2	1	121	1	115	2.80e-24	94.7
Msa0385080	AT4G38960.1	42.982	114	59	2	1	114	1	108	3.79e-24	94.7

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Find 48 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATCACAGAGAGGGAAA+TGG	0.517933	3_1:+88527639	None:intergenic
AAATGGTTGGGAGAATTATT+AGG	0.172908	3_1:+88527656	None:intergenic
AACACACCAAGAAGCATAAT+AGG	0.390006	3_1:-88527365	Msa0385080:CDS
AAGAAACCTATTATGCTTCT+TGG	0.240931	3_1:+88527359	None:intergenic
AATGGTTGGGAGAATTATTA+GGG	0.446787	3_1:+88527657	None:intergenic
ACGAGGCAAATATCACAGAG+AGG	0.701262	3_1:+88527632	None:intergenic
AGAGAAGCGACGGTGTTTGG+AGG	0.521730	3_1:+88527688	None:intergenic
AGGCGAGTTTGTTAGCATGG+TGG	0.655308	3_1:+88527708	None:intergenic
AGTGCGACATCTGTAACAAA+CGG	0.576581	3_1:-88527793	Msa0385080:CDS
ATAATAGGTTTCTTCTAAGT+GGG	0.482873	3_1:-88527350	Msa0385080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGTTGGGAGAATTATTA+GGG	+	chr3_1:88527148-88527167	None:intergenic	30.0%
AAATGGTTGGGAGAATTATT+AGG	+	chr3_1:88527149-88527168	None:intergenic	30.0%
AAGAAACCTATTATGCTTCT+TGG	+	chr3_1:88527446-88527465	None:intergenic	30.0%
CATAATAGGTTTCTTCTAAG+TGG	-	chr3_1:88527451-88527470	Msa0385080:intron	30.0%
AATGGTTGGGAGAATTATTA+GGG	+	chr3_1:88527148-88527167	None:intergenic	30.0%
AAATGGTTGGGAGAATTATT+AGG	+	chr3_1:88527149-88527168	None:intergenic	30.0%
AAGAAACCTATTATGCTTCT+TGG	+	chr3_1:88527446-88527465	None:intergenic	30.0%
CATAATAGGTTTCTTCTAAG+TGG	-	chr3_1:88527451-88527470	Msa0385080:intron	30.0%
AAATATCACAGAGAGGGAAA+TGG	+	chr3_1:88527166-88527185	None:intergenic	35.0%
GAATATTGGAGAGAATTACG+AGG	+	chr3_1:88527190-88527209	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	88526999	88527825	88526999	ID=Msa0385080;Name=Msa0385080
chr3_1	mRNA	88526999	88527825	88526999	ID=Msa0385080-mRNA-1;Parent=Msa0385080;Name=Msa0385080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|0.5\|0.33\|3\|0\|216
chr3_1	exon	88527634	88527825	88527634	ID=Msa0385080-mRNA-1:exon:23914;Parent=Msa0385080-mRNA-1
chr3_1	exon	88527259	88527469	88527259	ID=Msa0385080-mRNA-1:exon:23913;Parent=Msa0385080-mRNA-1
chr3_1	exon	88526999	88527243	88526999	ID=Msa0385080-mRNA-1:exon:23912;Parent=Msa0385080-mRNA-1
chr3_1	CDS	88527634	88527825	88527634	ID=Msa0385080-mRNA-1:cds;Parent=Msa0385080-mRNA-1
chr3_1	CDS	88527259	88527469	88527259	ID=Msa0385080-mRNA-1:cds;Parent=Msa0385080-mRNA-1
chr3_1	CDS	88526999	88527243	88526999	ID=Msa0385080-mRNA-1:cds;Parent=Msa0385080-mRNA-1

Gene Sequence

>Msa0385080

ATGAAGATCCAGTGCGACATCTGTAACAAACGGCAGGCTTCTTTATTCTGCACCGCGGATGAAGCCGCCTTATGCTCCACCTGCGACCACCGTGTCCACCATGCTAACAAACTCGCCTCCAAACACCGTCGCTTCTCTCTCAACCACCCTAATAATTCTCCCAACCATTTCCCTCTCTGTGATATTTGCCTCGAAAGAAGAGGTTTTGTTTTTTGTCAGGAAGATAGAGCAATTGTGTGCAAAGAGTGTGATTTGAAGATTCATGGTGTCAACGAACACACCAAGAAGCATAATAGGTTTCTTCTAAGTGGGATCAAGTTGTACTCTCCTGCTCCTCCTCCAACTCTTCATGAAGAAAATGGTAGTTTTACTATATCTGAGTACTTGATAAACACTATCCCAGATTTCCTTGAATCCCCTTCTTCTGTTCCCTCTCATGAACTACAACAGCAGAATCATATTGGTAAAGATACTACATTGTCAACAGTGCATGATGATGTTAATTATCATATTCATGAGGAAAATATTCTGGTTTCTTTCTCTAGCGAGAGCATGTGTGGGATCTGTGTTCCTCAAGCACCACTGTATTATTCTGAAAAAATGGATAACAAATCAAACACAATTAATGAAGCCACCAATTTCAGCAGC

Protein sequence

>Msa0385080

MKIQCDICNKRQASLFCTADEAALCSTCDHRVHHANKLASKHRRFSLNHPNNSPNHFPLCDICLERRGFVFCQEDRAIVCKECDLKIHGVNEHTKKHNRFLLSGIKLYSPAPPPTLHEENGSFTISEYLINTIPDFLESPSSVPSHELQQQNHIGKDTTLSTVHDDVNYHIHEENILVSFSSESMCGICVPQAPLYYSEKMDNKSNTINEATNFSS