AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385050 MtrunA17_Chr3g0142191 100.000 229 0 0 1 229 1 229 4.86e-175 479
Msa0385050 MtrunA17_Chr5g0404951 54.091 220 95 4 1 215 1 219 1.38e-75 228
Msa0385050 MtrunA17_Chr3g0125241 45.775 142 77 0 1 142 26 167 1.86e-43 145
Msa0385050 MtrunA17_Chr1g0159661 43.662 142 80 0 1 142 1 142 3.38e-39 133
Msa0385050 MtrunA17_Chr2g0279821 41.463 164 80 3 1 155 1 157 3.01e-35 125
Msa0385050 MtrunA17_Chr8g0351041 43.125 160 81 3 1 153 1 157 2.73e-33 117
Msa0385050 MtrunA17_Chr4g0049541 37.313 201 102 4 1 192 1 186 8.81e-33 118
Msa0385050 MtrunA17_Chr2g0284911 39.801 201 102 5 1 187 16 211 1.10e-32 119
Msa0385050 MtrunA17_Chr8g0380021 42.424 165 89 3 1 162 17 178 1.49e-32 118
Msa0385050 MtrunA17_Chr4g0057151 42.581 155 78 3 1 148 1 151 1.67e-32 117
Msa0385050 MtrunA17_Chr8g0351051 35.443 237 125 7 1 228 1 218 2.96e-32 117
Msa0385050 MtrunA17_Chr8g0351031 41.250 160 84 3 1 153 1 157 1.43e-31 115
Msa0385050 MtrunA17_Chr3g0097101 38.857 175 91 4 1 166 16 183 1.47e-31 115
Msa0385050 MtrunA17_Chr3g0122251 41.615 161 86 2 1 153 1 161 2.20e-31 115
Msa0385050 MtrunA17_Chr7g0246431 41.818 165 81 4 1 156 1 159 3.43e-31 114
Msa0385050 MtrunA17_Chr4g0061691 42.353 170 91 3 1 165 1 168 4.99e-31 114
Msa0385050 MtrunA17_Chr7g0220121 39.205 176 89 4 1 166 1 168 7.20e-31 114
Msa0385050 MtrunA17_Chr3g0077501 37.576 165 82 3 1 153 1 156 1.02e-30 113
Msa0385050 MtrunA17_Chr5g0420081 39.429 175 96 3 1 168 1 172 2.84e-30 112
Msa0385050 MtrunA17_Chr5g0411691 38.854 157 77 3 1 147 1 148 6.36e-30 111
Msa0385050 MtrunA17_Chr7g0220111 42.405 158 85 3 1 153 1 157 1.86e-29 110
Msa0385050 MtrunA17_Chr8g0366231 40.854 164 79 5 1 153 1 157 2.78e-29 109
Msa0385050 MtrunA17_Chr6g0474371 38.235 170 98 2 1 164 1 169 4.45e-29 107
Msa0385050 MtrunA17_Chr1g0164791 35.404 161 96 1 1 153 1 161 4.56e-29 108
Msa0385050 MtrunA17_Chr6g0455511 41.139 158 87 3 1 153 1 157 1.29e-28 108
Msa0385050 MtrunA17_Chr5g0420091 40.252 159 88 3 1 153 1 158 1.08e-27 105
Msa0385050 MtrunA17_Chr5g0412461 41.436 181 87 5 1 170 1 173 1.47e-27 105
Msa0385050 MtrunA17_Chr4g0018421 35.632 174 104 4 1 168 1 172 4.01e-26 100
Msa0385050 MtrunA17_Chr4g0061671 38.411 151 89 2 1 148 1 150 6.63e-26 99.4
Msa0385050 MtrunA17_Chr5g0412271 42.073 164 75 5 1 152 1 156 1.08e-25 100
Msa0385050 MtrunA17_Chr4g0049901 38.462 169 77 4 1 153 27 184 7.32e-25 98.2
Msa0385050 MtrunA17_Chr5g0427401 39.752 161 82 4 1 153 1 154 1.52e-24 97.1
Msa0385050 MtrunA17_Chr1g0204111 33.529 170 105 2 1 164 17 184 3.61e-24 96.7
Msa0385050 MtrunA17_Chr1g0173161 68.333 60 19 0 1 60 1 60 4.11e-24 91.7
Msa0385050 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 6.16e-24 90.5
Msa0385050 MtrunA17_Chr4g0020221 38.994 159 86 3 1 151 1 156 7.25e-23 93.2
Msa0385050 MtrunA17_Chr2g0308251 64.407 59 21 0 1 59 1 59 1.78e-22 87.8
Msa0385050 MtrunA17_Chr7g0246381 62.903 62 23 0 1 62 1 62 5.90e-22 85.9
Msa0385050 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 7.06e-22 86.7
Msa0385050 MtrunA17_Chr4g0044071 63.158 57 21 0 1 57 1 57 1.01e-19 81.3
Msa0385050 MtrunA17_Chr5g0425191 63.158 57 21 0 1 57 1 57 1.14e-19 80.9
Msa0385050 MtrunA17_Chr3g0134451 42.400 125 62 4 1 122 1 118 2.22e-19 85.1
Msa0385050 MtrunA17_Chr8g0379021 40.157 127 60 3 2 127 12 123 9.39e-19 80.5
Msa0385050 MtrunA17_Chr1g0166611 60.000 55 22 0 13 67 17 71 1.41e-17 76.3
Msa0385050 MtrunA17_Chr8g0357771 36.691 139 81 3 1 133 1 138 3.35e-17 76.6
Msa0385050 MtrunA17_Chr2g0333981 35.443 158 81 7 1 143 11 162 3.21e-16 73.6
Msa0385050 MtrunA17_Chr4g0052061 33.333 135 69 4 1 135 1 114 1.50e-15 71.6
Msa0385050 MtrunA17_Chr5g0417661 56.604 53 23 0 1 53 56 108 2.49e-15 70.1
Msa0385050 MtrunA17_Chr1g0175611 48.387 62 32 0 1 62 1 62 5.67e-15 70.1
Msa0385050 MtrunA17_Chr4g0060841 56.604 53 23 0 1 53 1 53 5.68e-15 72.8
Msa0385050 MtrunA17_Chr8g0376821 48.387 62 32 0 1 62 1 62 6.16e-15 70.5
Msa0385050 MtrunA17_Chr4g0018951 39.669 121 55 5 14 121 24 139 8.56e-15 69.7
Msa0385050 MtrunA17_Chr3g0089141 33.835 133 74 3 2 133 9 128 1.07e-14 70.9
Msa0385050 MtrunA17_Chr1g0208581 49.206 63 32 0 2 64 9 71 1.11e-14 70.5
Msa0385050 MtrunA17_Chr2g0325971 34.400 125 71 4 2 119 9 129 1.45e-14 70.5
Msa0385050 MtrunA17_Chr1g0208561 47.619 63 33 0 2 64 9 71 1.55e-14 70.1
Msa0385050 MtrunA17_Chr1g0169761 48.387 62 32 0 1 62 1 62 1.76e-14 68.9
Msa0385050 MtrunA17_Chr2g0317451 28.249 177 99 4 2 154 9 181 1.82e-14 70.1
Msa0385050 MtrunA17_Chr2g0317481 28.249 177 99 4 2 154 9 181 1.95e-14 70.1
Msa0385050 MtrunA17_Chr8g0356071 47.222 72 36 1 1 70 1 72 2.10e-14 68.6
Msa0385050 MtrunA17_Chr1g0180591 46.774 62 33 0 1 62 1 62 2.37e-14 68.9
Msa0385050 MtrunA17_Chr1g0175601 46.875 64 34 0 1 64 1 64 2.62e-14 68.6
Msa0385050 MtrunA17_Chr5g0419601 48.438 64 33 0 1 64 8 71 5.39e-14 68.9
Msa0385050 MtrunA17_Chr3g0099421 54.237 59 27 0 2 60 34 92 6.07e-14 68.9
Msa0385050 MtrunA17_Chr1g0149391 47.143 70 35 1 2 71 9 76 7.73e-14 68.6
Msa0385050 MtrunA17_Chr2g0292791 47.143 70 35 1 2 71 9 76 8.80e-14 68.2
Msa0385050 MtrunA17_Chr1g0187361 47.619 63 33 0 2 64 9 71 1.13e-13 68.2
Msa0385050 MtrunA17_Chr4g0052081 41.892 74 41 1 1 72 1 74 1.14e-13 67.0
Msa0385050 MtrunA17_Chr3g0099411 45.714 70 36 1 2 71 9 76 1.21e-13 67.8
Msa0385050 MtrunA17_Chr1g0206701 47.619 63 33 0 2 64 9 71 1.29e-13 67.8
Msa0385050 MtrunA17_Chr4g0074101 46.667 60 32 0 1 60 1 60 1.53e-13 67.0
Msa0385050 MtrunA17_Chr1g0206721 45.714 70 36 1 2 71 9 76 1.59e-13 67.8
Msa0385050 MtrunA17_Chr1g0188671 47.619 63 33 0 2 64 47 109 1.68e-13 68.2
Msa0385050 MtrunA17_Chr8g0355091 47.619 63 33 0 2 64 9 71 2.02e-13 67.4
Msa0385050 MtrunA17_Chr5g0422941 47.619 63 33 0 2 64 9 71 2.81e-13 67.0
Msa0385050 MtrunA17_Chr5g0422421 45.714 70 36 1 2 71 9 76 3.50e-13 66.6
Msa0385050 MtrunA17_Chr3g0111841 49.123 57 29 0 8 64 2 58 4.45e-13 62.4
Msa0385050 MtrunA17_Chr1g0206991 44.286 70 37 1 2 71 9 76 4.72e-13 65.5
Msa0385050 MtrunA17_Chr2g0300421 44.444 63 35 0 2 64 9 71 1.17e-12 63.9
Msa0385050 MtrunA17_Chr6g0457851 27.815 151 95 4 1 138 11 160 5.41e-12 64.3
Msa0385050 MtrunA17_Chr3g0119901 40.845 71 40 1 1 71 8 76 6.04e-12 62.8
Msa0385050 MtrunA17_Chr2g0300441 46.667 60 32 0 5 64 12 71 7.44e-12 62.8
Msa0385050 MtrunA17_Chr3g0085241 42.188 64 37 0 1 64 40 103 1.88e-11 62.0
Msa0385050 MtrunA17_Chr1g0206691 26.506 166 98 3 11 154 1 164 2.19e-11 61.2
Msa0385050 MtrunA17_Chr3g0089151 39.189 74 43 1 2 75 9 80 2.95e-11 59.3
Msa0385050 MtrunA17_Chr8g0345001 30.216 139 76 4 3 121 19 156 3.22e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385050 AT3G54340.1 56.897 232 95 2 1 228 1 231 7.58e-94 275
Msa0385050 AT5G20240.1 36.019 211 120 2 1 210 1 197 5.36e-40 137
Msa0385050 AT5G20240.2 43.662 142 80 0 1 142 1 142 1.07e-37 129
Msa0385050 AT4G18960.1 35.537 242 134 7 2 228 18 252 5.02e-36 128
Msa0385050 AT5G60910.1 44.068 177 91 3 1 171 1 175 3.94e-35 125
Msa0385050 AT4G11880.2 43.750 160 79 4 1 153 1 156 1.08e-33 119
Msa0385050 AT4G11880.3 43.750 160 79 4 1 153 1 156 1.08e-33 119
Msa0385050 AT5G13790.2 44.767 172 81 5 1 166 1 164 1.44e-33 122
Msa0385050 AT4G11880.4 46.000 150 70 4 1 143 1 146 2.73e-33 120
Msa0385050 AT4G11880.1 46.000 150 70 4 1 143 1 146 2.73e-33 120
Msa0385050 AT2G45660.2 42.515 167 71 3 1 153 1 156 2.90e-33 118
Msa0385050 AT2G45660.1 42.515 167 71 3 1 153 1 156 1.63e-32 117
Msa0385050 AT2G45650.1 34.188 234 132 6 1 228 1 218 4.31e-32 117
Msa0385050 AT4G22950.2 41.290 155 79 4 1 148 1 150 5.85e-32 115
Msa0385050 AT4G09960.1 38.650 163 83 3 1 153 1 156 8.14e-32 116
Msa0385050 AT4G09960.6 38.650 163 83 3 1 153 2 157 8.43e-32 116
Msa0385050 AT5G13790.1 43.195 169 85 4 1 166 1 161 1.09e-31 117
Msa0385050 AT4G09960.5 38.650 163 83 3 1 153 11 166 1.24e-31 116
Msa0385050 AT4G09960.3 38.650 163 83 3 1 153 27 182 1.80e-31 116
Msa0385050 AT4G22950.3 41.290 155 79 4 1 148 1 150 1.92e-31 115
Msa0385050 AT4G22950.1 41.290 155 79 4 1 148 1 150 1.92e-31 115
Msa0385050 AT3G57230.2 43.333 150 65 3 1 139 1 141 2.51e-31 112
Msa0385050 AT3G57230.1 40.361 166 79 3 1 155 1 157 3.17e-31 115
Msa0385050 AT3G57230.4 40.361 166 79 3 1 155 1 157 3.17e-31 115
Msa0385050 AT5G51870.1 38.547 179 94 7 1 169 1 173 4.65e-31 114
Msa0385050 AT4G37940.1 39.759 166 80 3 1 155 1 157 6.88e-31 114
Msa0385050 AT2G42830.2 39.130 161 87 3 1 154 16 172 1.50e-30 113
Msa0385050 AT2G42830.1 39.375 160 86 3 1 153 16 171 1.59e-30 113
Msa0385050 AT5G23260.2 36.410 195 119 2 1 190 1 195 1.66e-30 113
Msa0385050 AT5G51870.4 39.053 169 90 6 1 162 1 163 1.75e-30 112
Msa0385050 AT5G51870.3 38.983 177 92 7 1 167 11 181 1.88e-30 112
Msa0385050 AT4G09960.4 38.415 164 84 3 1 154 96 252 2.05e-30 115
Msa0385050 AT5G23260.4 36.410 195 119 2 1 190 17 211 2.68e-30 113
Msa0385050 AT4G09960.2 40.940 149 71 3 1 139 1 142 3.42e-30 112
Msa0385050 AT3G58780.1 38.750 160 87 3 1 153 16 171 4.52e-30 112
Msa0385050 AT3G58780.5 38.750 160 87 3 1 153 22 177 4.80e-30 112
Msa0385050 AT5G51870.2 39.490 157 77 6 1 146 1 150 6.14e-30 110
Msa0385050 AT3G61120.1 35.909 220 113 6 1 210 1 202 1.06e-29 111
Msa0385050 AT4G37940.4 40.244 164 77 4 1 152 1 155 1.06e-29 110
Msa0385050 AT4G24540.1 37.113 194 114 3 1 189 1 191 1.13e-29 110
Msa0385050 AT5G15800.1 43.396 159 83 4 1 153 1 158 1.29e-29 111
Msa0385050 AT5G23260.3 41.379 145 83 1 1 143 1 145 1.78e-29 110
Msa0385050 AT5G15800.2 43.396 159 83 4 1 153 1 158 1.89e-29 111
Msa0385050 AT4G37940.3 41.333 150 68 3 1 139 1 141 2.00e-29 108
Msa0385050 AT5G51870.5 39.490 157 77 6 1 146 24 173 2.04e-29 109
Msa0385050 AT3G58780.2 39.869 153 88 2 1 153 16 164 3.24e-29 110
Msa0385050 AT3G02310.2 43.046 151 82 2 1 147 1 151 4.21e-29 108
Msa0385050 AT3G02310.1 43.038 158 85 3 1 153 1 158 5.87e-29 109
Msa0385050 AT5G23260.1 41.667 144 82 1 1 142 17 160 8.37e-29 109
Msa0385050 AT3G58780.4 41.216 148 76 3 1 141 16 159 8.57e-29 109
Msa0385050 AT1G24260.1 42.593 162 82 5 1 153 1 160 3.05e-28 107
Msa0385050 AT1G24260.3 37.870 169 82 4 1 154 1 161 3.76e-28 107
Msa0385050 AT3G30260.1 40.523 153 83 4 1 147 1 151 5.74e-28 107
Msa0385050 AT2G22630.1 37.195 164 87 3 1 155 1 157 6.15e-28 106
Msa0385050 AT2G22630.2 37.195 164 87 3 1 155 1 157 6.15e-28 106
Msa0385050 AT1G24260.2 39.053 169 79 5 1 153 1 161 6.53e-28 107
Msa0385050 AT2G03710.3 37.748 151 90 1 1 147 1 151 9.78e-28 104
Msa0385050 AT2G03710.2 36.943 157 95 1 1 153 1 157 1.01e-27 106
Msa0385050 AT2G14210.1 40.506 158 75 3 1 147 1 150 1.13e-27 105
Msa0385050 AT2G03710.1 36.943 157 95 1 1 153 1 157 1.15e-27 106
Msa0385050 AT2G14210.2 40.506 158 75 3 1 147 1 150 1.28e-27 105
Msa0385050 AT1G26310.1 37.288 177 105 2 1 171 1 177 2.44e-27 105
Msa0385050 AT1G69120.2 41.250 160 84 4 1 153 1 157 2.76e-27 104
Msa0385050 AT1G69120.1 41.250 160 84 4 1 153 1 157 3.56e-27 105
Msa0385050 AT5G62165.17 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0385050 AT5G62165.12 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0385050 AT5G62165.11 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0385050 AT3G58780.3 34.426 183 88 3 1 153 16 196 7.48e-27 104
Msa0385050 AT2G22540.3 41.463 164 77 4 1 153 1 156 1.08e-26 103
Msa0385050 AT2G22540.1 41.463 164 77 4 1 153 1 156 1.08e-26 103
Msa0385050 AT3G57390.3 33.854 192 109 5 1 177 1 189 1.31e-26 102
Msa0385050 AT5G62165.6 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0385050 AT5G62165.9 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0385050 AT5G62165.7 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0385050 AT5G62165.8 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0385050 AT5G62165.13 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0385050 AT3G57390.1 33.854 192 109 5 1 177 1 189 2.34e-26 102
Msa0385050 AT5G51860.2 35.632 174 97 4 1 166 1 167 2.78e-26 101
Msa0385050 AT5G62165.3 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0385050 AT5G62165.1 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0385050 AT5G62165.2 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0385050 AT5G51860.1 35.632 174 97 4 1 166 1 167 4.29e-26 100
Msa0385050 AT5G62165.10 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
Msa0385050 AT5G62165.4 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
Msa0385050 AT2G22540.2 41.509 159 79 4 1 153 1 151 2.65e-24 97.1
Msa0385050 AT5G10140.4 32.749 171 89 3 1 160 1 156 2.19e-22 90.5
Msa0385050 AT5G62165.14 65.000 60 21 0 1 60 1 60 3.80e-22 87.8
Msa0385050 AT5G65070.1 30.851 188 113 3 1 175 1 184 2.76e-21 88.2
Msa0385050 AT1G71692.1 52.632 76 35 1 1 76 1 75 8.73e-21 87.0
Msa0385050 AT5G10140.2 33.333 159 80 3 1 148 1 144 1.19e-20 85.5
Msa0385050 AT5G10140.1 33.333 159 80 3 1 148 1 144 1.47e-20 86.3
Msa0385050 AT5G65070.4 33.813 139 88 2 1 139 1 135 3.19e-20 84.0
Msa0385050 AT5G10140.3 33.333 159 80 3 1 148 1 144 3.54e-20 84.7
Msa0385050 AT5G65050.2 31.928 166 95 5 1 159 1 155 1.74e-19 82.8
Msa0385050 AT5G65050.3 31.928 166 95 5 1 159 1 155 2.09e-19 83.2
Msa0385050 AT5G65050.1 31.447 159 91 5 1 152 1 148 4.30e-19 82.0
Msa0385050 AT5G65080.3 32.168 143 93 2 1 143 8 146 1.03e-18 81.3
Msa0385050 AT5G65070.5 29.730 185 97 5 1 155 1 182 1.13e-18 81.6
Msa0385050 AT5G65050.5 33.125 160 90 5 1 159 1 144 1.48e-18 80.5
Msa0385050 AT5G65070.2 29.358 218 108 6 1 175 1 215 2.70e-18 80.9
Msa0385050 AT5G65070.3 31.507 219 103 9 1 175 1 216 3.51e-18 80.5
Msa0385050 AT5G65080.2 32.867 143 91 3 1 143 8 145 3.78e-18 80.1
Msa0385050 AT1G22130.1 66.667 54 18 0 1 54 1 54 3.80e-18 82.0
Msa0385050 AT1G77980.1 64.815 54 19 0 1 54 1 54 9.13e-18 80.9
Msa0385050 AT5G65060.1 29.870 154 82 4 1 143 1 139 1.65e-16 75.5
Msa0385050 AT5G65060.2 43.836 73 40 1 1 73 1 72 1.99e-16 74.7
Msa0385050 AT5G65060.3 29.870 154 82 4 1 143 1 139 2.64e-16 74.7
Msa0385050 AT1G18750.4 58.491 53 22 0 1 53 1 53 7.31e-16 75.9
Msa0385050 AT1G18750.1 58.491 53 22 0 1 53 1 53 7.97e-16 75.9
Msa0385050 AT1G18750.3 58.491 53 22 0 1 53 1 53 1.01e-15 75.9
Msa0385050 AT1G77080.4 32.026 153 100 2 1 153 1 149 2.32e-15 72.4
Msa0385050 AT2G03060.3 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0385050 AT2G03060.7 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0385050 AT2G03060.1 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0385050 AT2G03060.2 39.785 93 55 1 1 93 1 92 4.06e-15 73.9
Msa0385050 AT1G77080.11 33.117 154 97 3 1 153 1 149 6.02e-15 70.9
Msa0385050 AT1G77080.5 32.026 153 100 2 1 153 1 149 6.56e-15 70.5
Msa0385050 AT1G31140.1 31.944 144 92 2 1 139 1 143 6.97e-15 71.2
Msa0385050 AT1G77080.12 31.250 160 90 2 1 154 1 146 7.57e-15 69.7
Msa0385050 AT1G77080.2 31.447 159 89 2 1 153 1 145 1.16e-14 70.1
Msa0385050 AT1G72350.1 30.612 147 85 2 2 131 43 189 1.36e-14 70.9
Msa0385050 AT1G01530.1 50.000 60 30 0 1 60 6 65 1.62e-14 70.9
Msa0385050 AT2G34440.1 43.836 73 39 1 1 71 1 73 2.19e-14 68.9
Msa0385050 AT1G31140.2 32.653 147 89 3 1 139 1 145 4.52e-14 68.9
Msa0385050 AT1G77950.3 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0385050 AT1G77950.2 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0385050 AT1G77950.1 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0385050 AT1G77950.4 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0385050 AT4G37435.1 52.632 57 27 0 1 57 1 57 1.38e-13 67.4
Msa0385050 AT3G66656.1 48.333 60 31 0 1 60 1 60 2.26e-13 66.6
Msa0385050 AT1G65360.1 45.161 62 34 0 1 62 6 67 5.27e-13 66.2
Msa0385050 AT1G69540.1 52.830 53 25 0 1 53 1 53 7.94e-13 67.0
Msa0385050 AT4G36590.1 50.820 61 30 0 2 62 7 67 8.44e-13 66.2
Msa0385050 AT5G60440.1 32.609 138 77 5 2 138 7 129 9.42e-13 66.6
Msa0385050 AT1G47760.1 33.333 126 72 3 1 121 1 119 9.65e-13 64.7
Msa0385050 AT1G69540.2 52.830 53 25 0 1 53 1 53 9.72e-13 67.0
Msa0385050 AT1G77080.8 46.575 73 38 1 1 73 1 72 1.05e-12 65.5
Msa0385050 AT2G24840.1 27.638 199 118 4 1 183 62 250 1.63e-12 65.5
Msa0385050 AT3G04100.1 41.667 60 35 0 2 61 14 73 3.49e-12 63.9
Msa0385050 AT1G29962.1 45.000 60 33 0 2 61 8 67 2.14e-11 61.2
Msa0385050 AT1G28460.1 45.000 60 33 0 2 61 8 67 3.40e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTGGATTCTCAAATTT+AGG 0.238867 3_1:-88502046 Msa0385050:CDS
TCAACTTTACCTTCTTCCTT+TGG 0.281706 3_1:+88502342 None:intergenic
GGCAAAGACCATACCATTAT+AGG 0.302269 3_1:-88506717 Msa0385050:five_prime_UTR
CAACTTTACCTTCTTCCTTT+GGG 0.311919 3_1:+88502343 None:intergenic
TGTTCTCTATTCTCTTGATC+TGG 0.318834 3_1:+88506500 None:intergenic
GAGAGATGCATTTCCTATAA+TGG 0.324383 3_1:+88506704 None:intergenic
TCATAGTATCATATTATTGT+TGG 0.373157 3_1:+88501875 None:intergenic
CACTGTTCTTTGTGATGCTA+AGG 0.392741 3_1:-88506413 Msa0385050:CDS
GCTCCTCCATTGTGAGGATT+AGG 0.402175 3_1:+88501986 None:intergenic
GAGGCTTCTTGAGGATGAAA+TGG 0.410025 3_1:-88505878 Msa0385050:CDS
AGAAACTGAAAGATGTCAAT+AGG 0.417053 3_1:-88506063 Msa0385050:CDS
GGAATCTTCGCAAGGAGATT+AGG 0.438224 3_1:-88506042 Msa0385050:intron
TTCATGAAGCTTGCCAGTGC+TGG 0.445387 3_1:+88506372 None:intergenic
AGATAGATAGATAGATAGCT+AGG 0.463869 3_1:-88506554 Msa0385050:five_prime_UTR
GGGGAGTACGAGTCTGTGAT+TGG 0.478663 3_1:-88502061 Msa0385050:CDS
CAACAGACTCCTGCGTGACT+TGG 0.486936 3_1:-88502228 Msa0385050:intron
CATAGTAAACAACAACAATC+AGG 0.488548 3_1:-88506590 Msa0385050:five_prime_UTR
AGATAGATAGATAGCTAGGT+AGG 0.490031 3_1:-88506550 Msa0385050:five_prime_UTR
ATTATCATGTTCTCCAGCAC+TGG 0.494724 3_1:-88506385 Msa0385050:CDS
GTAGTTTAATAATGAGAGAG+AGG 0.503057 3_1:-88502255 Msa0385050:intron
TACGTACTAGGCAGAGGATG+GGG 0.507362 3_1:-88505933 Msa0385050:intron
TGGAGGAGCATCAGCTGCCT+CGG 0.511038 3_1:-88501972 Msa0385050:CDS
CTAGGTAGGTTATCTAGCTA+TGG 0.524845 3_1:-88506536 Msa0385050:exon
TTGAAATGATGGACAATGGA+GGG 0.529931 3_1:-88502081 Msa0385050:CDS
TCTGTGGAACTCTCATTATG+AGG 0.531523 3_1:-88506188 Msa0385050:intron
ACAAAGAACAGTGAGCTCAT+TGG 0.534621 3_1:+88506423 None:intergenic
CCCTCTGTATAGATAAGTCT+TGG 0.535006 3_1:+88506642 None:intergenic
ATGCATTTCCTATAATGGTA+TGG 0.547155 3_1:+88506709 None:intergenic
GAAAGAAACATACGAGGCGG+AGG 0.547284 3_1:+88506339 None:intergenic
GATTGACACCCAAAGGAAGA+AGG 0.549485 3_1:-88502351 Msa0385050:intron
ACAGAGGGTAGGAACTAGAA+AGG 0.552507 3_1:-88506627 Msa0385050:five_prime_UTR
CTTGCGCTCACGAATAGCCT+TGG 0.554248 3_1:+88505846 None:intergenic
TGAAATGATGGACAATGGAG+GGG 0.558395 3_1:-88502080 Msa0385050:CDS
GATCAATATCAGATGACTGT+AGG 0.558840 3_1:-88506217 Msa0385050:CDS
TGAAATGGACAAGGCTGCCA+AGG 0.561225 3_1:-88505863 Msa0385050:CDS
ACTACGTACTAGGCAGAGGA+TGG 0.565678 3_1:-88505935 Msa0385050:intron
TTATTGTTGGAAAGTGATTG+TGG 0.567585 3_1:+88501888 None:intergenic
CTACGTACTAGGCAGAGGAT+GGG 0.571534 3_1:-88505934 Msa0385050:intron
TTGTGAGGATTAGGATGAGT+AGG 0.571730 3_1:+88501995 None:intergenic
CAAGGCTATTCGTGAGCGCA+AGG 0.573130 3_1:-88505845 Msa0385050:intron
ACTTACTCAAAACGAAGGAA+TGG 0.578899 3_1:-88506460 Msa0385050:CDS
GGAAGAGCTGAGGCTTCTTG+AGG 0.588608 3_1:-88505887 Msa0385050:CDS
CAAATCAGATTGACACCCAA+AGG 0.596522 3_1:-88502358 Msa0385050:CDS
TGGCGTGCAATCACAGACAA+TGG 0.598626 3_1:+88506662 None:intergenic
TTGTCCATCATTTCAAAACG+TGG 0.601318 3_1:+88502088 None:intergenic
GCTGATGCTCCTCCATTGTG+AGG 0.602305 3_1:+88501980 None:intergenic
AAAGAAACATACGAGGCGGA+GGG 0.606316 3_1:+88506340 None:intergenic
GCCAAGACTTATCTATACAG+AGG 0.611724 3_1:-88506643 Msa0385050:five_prime_UTR
ATCTGAGCATGGAAGAGCTG+AGG 0.615257 3_1:-88505897 Msa0385050:CDS
CCAAGACTTATCTATACAGA+GGG 0.622964 3_1:-88506642 Msa0385050:five_prime_UTR
TGTCAATAGGAATCTTCGCA+AGG 0.629338 3_1:-88506050 Msa0385050:CDS
ACGTACTAGGCAGAGGATGG+GGG 0.634592 3_1:-88505932 Msa0385050:intron
CATCCTAATCCTCACAATGG+AGG 0.635153 3_1:-88501989 Msa0385050:CDS
GACTTATCTATACAGAGGGT+AGG 0.637498 3_1:-88506638 Msa0385050:five_prime_UTR
AAGCTCAATGCAAACATGCG+TGG 0.640903 3_1:+88502022 None:intergenic
TCTTGAGGATGAAATGGACA+AGG 0.641493 3_1:-88505872 Msa0385050:CDS
ATGTCTGAATGATCTGAGCA+TGG 0.649883 3_1:-88505908 Msa0385050:CDS
GGTTATCTAGCTATGGCTCG+AGG 0.656910 3_1:-88506529 Msa0385050:exon
AGGGTAAGTGGTGAGATCCG+AGG 0.669094 3_1:+88501955 None:intergenic
TTTGAAATGATGGACAATGG+AGG 0.672358 3_1:-88502082 Msa0385050:CDS
AAGTAACTTACTCAAAACGA+AGG 0.681799 3_1:-88506465 Msa0385050:CDS
ACTCATCCTAATCCTCACAA+TGG 0.687965 3_1:-88501992 Msa0385050:CDS
AAGAAACATACGAGGCGGAG+GGG 0.689447 3_1:+88506341 None:intergenic
TGACTGTAGGAATTGATCTG+TGG 0.697006 3_1:-88506204 Msa0385050:CDS
TGATACATACCAAGTCACGC+AGG 0.717237 3_1:+88502219 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAAAAAAAAAAAT+AGG - chr3_1:88503568-88503587 Msa0385050:intron 0.0%
!! TGAAAAAAAATAAAAGAAAA+AGG + chr3_1:88502290-88502309 None:intergenic 10.0%
!! ATAAGTATTATAAATTTCTT+TGG - chr3_1:88502416-88502435 Msa0385050:intron 10.0%
!! ATATTTATATATAGGATTTA+GGG + chr3_1:88502462-88502481 None:intergenic 10.0%
!!! ACTATTTTCATAAAATATAT+TGG - chr3_1:88503259-88503278 Msa0385050:intron 10.0%
!!! TATAATTATATGATAATGTA+AGG + chr3_1:88504194-88504213 None:intergenic 10.0%
!!! CATAAATTTTAATATAGTAT+TGG + chr3_1:88504432-88504451 None:intergenic 10.0%
!! TTAAAATTTATGTTCAAAAT+CGG - chr3_1:88504440-88504459 Msa0385050:intron 10.0%
!!! CTATCAAAATATAATTTTAT+CGG + chr3_1:88504998-88505017 None:intergenic 10.0%
!! AAAAAAAATATTATCATCAT+TGG + chr3_1:88505186-88505205 None:intergenic 10.0%
!!! AAAATTGATTGATTTAATTA+TGG - chr3_1:88506300-88506319 Msa0385050:intron 10.0%
!! AAATAAAAGAAAAAGGAAAA+GGG + chr3_1:88502283-88502302 None:intergenic 15.0%
!! AAAATAAAAGAAAAAGGAAA+AGG + chr3_1:88502284-88502303 None:intergenic 15.0%
!! CATATTTATATATAGGATTT+AGG + chr3_1:88502463-88502482 None:intergenic 15.0%
!! ACATATGCATATTTATATAT+AGG + chr3_1:88502470-88502489 None:intergenic 15.0%
!! TAAACAAAAATTCTTCAAAA+AGG + chr3_1:88502939-88502958 None:intergenic 15.0%
!!! ATCAATTTTTGTCATATTTA+AGG - chr3_1:88503904-88503923 Msa0385050:intron 15.0%
!!! TCAATTTTTGTCATATTTAA+GGG - chr3_1:88503905-88503924 Msa0385050:intron 15.0%
!! ATATACTACGATAAAAATAA+AGG + chr3_1:88504048-88504067 None:intergenic 15.0%
!!! TTAAAATTAGTCATCTTTTT+AGG + chr3_1:88504791-88504810 None:intergenic 15.0%
!! TTGGATATATATATAATGTT+AGG + chr3_1:88505066-88505085 None:intergenic 15.0%
!! TATATATCCAATAATTATCT+AGG - chr3_1:88505075-88505094 Msa0385050:intron 15.0%
!!! ATGATAATATTTTTTTTCTG+AGG - chr3_1:88505189-88505208 Msa0385050:intron 15.0%
!!! TCATTTTATCTATAAATTAC+AGG - chr3_1:88505690-88505709 Msa0385050:intron 15.0%
!! ATTCTATATAAGTAAAAAAC+TGG + chr3_1:88505872-88505891 None:intergenic 15.0%
!! TCTGATTTATATTATTGTCT+TGG - chr3_1:88502166-88502185 Msa0385050:intron 20.0%
!!! TTATATGTGTGATGAAATTT+TGG + chr3_1:88502689-88502708 None:intergenic 20.0%
!! TTCATCACACATATAAATTA+AGG - chr3_1:88502693-88502712 Msa0385050:intron 20.0%
!! TAAATAAAACAGATTACGAA+AGG + chr3_1:88502844-88502863 None:intergenic 20.0%
!!! TTCGTAATCTGTTTTATTTA+CGG - chr3_1:88502844-88502863 Msa0385050:intron 20.0%
!!! TTTAGTACTTTTGTTGTAAT+GGG + chr3_1:88503057-88503076 None:intergenic 20.0%
!!! ATTTAGTACTTTTGTTGTAA+TGG + chr3_1:88503058-88503077 None:intergenic 20.0%
!! AATTATTCATATCATGACAA+AGG + chr3_1:88503177-88503196 None:intergenic 20.0%
!! TTCATAAAATATATTGGAGA+AGG - chr3_1:88503265-88503284 Msa0385050:intron 20.0%
!! TCATAAAATATATTGGAGAA+GGG - chr3_1:88503266-88503285 Msa0385050:intron 20.0%
!! TTTACACATGAGAAAATAAA+TGG - chr3_1:88503322-88503341 Msa0385050:intron 20.0%
!!! ATATTTTAAAATGACTTAGG+TGG + chr3_1:88503748-88503767 None:intergenic 20.0%
!!! ACCTAAGTCATTTTAAAATA+TGG - chr3_1:88503747-88503766 Msa0385050:intron 20.0%
!!! ACCATATTTTAAAATGACTT+AGG + chr3_1:88503751-88503770 None:intergenic 20.0%
!! ATATAATTGAAGTATGTCAT+AGG + chr3_1:88503795-88503814 None:intergenic 20.0%
!!! CTAAATTTTGATATCATGAA+TGG - chr3_1:88504004-88504023 Msa0385050:intron 20.0%
!! TCATAAAAAAATAGTGAAGT+AGG - chr3_1:88504109-88504128 Msa0385050:intron 20.0%
!! CATAAAAAAATAGTGAAGTA+GGG - chr3_1:88504110-88504129 Msa0385050:intron 20.0%
!! ATTGCATTTACTTGTAAAAT+AGG - chr3_1:88504463-88504482 Msa0385050:intron 20.0%
!! ATTTACTTGTAAAATAGGTT+TGG - chr3_1:88504468-88504487 Msa0385050:intron 20.0%
!!! AAAAGATGACTAATTTTAAG+TGG - chr3_1:88504792-88504811 Msa0385050:intron 20.0%
!! GAAACGATTTAAAAACTAAA+AGG - chr3_1:88504895-88504914 Msa0385050:intron 20.0%
!!! CACCAAATAATTTTTTTGAA+CGG + chr3_1:88505101-88505120 None:intergenic 20.0%
!!! CAATGTTTTAAATTGAGAAA+GGG - chr3_1:88505570-88505589 Msa0385050:intron 20.0%
!! AAAAAAGAACCAAAGTTATT+AGG + chr3_1:88505664-88505683 None:intergenic 20.0%
!! TTATGCTAACTGAAAATTAA+TGG + chr3_1:88505772-88505791 None:intergenic 20.0%
!! AATTGTATAACAAACTAACA+AGG + chr3_1:88505979-88505998 None:intergenic 20.0%
!!! TTAACTTATTTCTTGTTCAT+AGG - chr3_1:88506113-88506132 Msa0385050:intron 20.0%
!! ACTTAGATAGAATTACATAT+AGG - chr3_1:88506248-88506267 Msa0385050:intron 20.0%
!!! TTGATTGATTTAATTATGGA+AGG - chr3_1:88506304-88506323 Msa0385050:intron 20.0%
!! TCATAGTATCATATTATTGT+TGG + chr3_1:88506560-88506579 None:intergenic 20.0%
! TTATATATAGGATTTAGGGA+AGG + chr3_1:88502458-88502477 None:intergenic 25.0%
! ATAATTCCAAATTAGCTACA+AGG + chr3_1:88502891-88502910 None:intergenic 25.0%
! ATGTTTAAATTACACATGAG+AGG - chr3_1:88503425-88503444 Msa0385050:intron 25.0%
! TATGTACATGTCATTACATA+TGG - chr3_1:88503492-88503511 Msa0385050:intron 25.0%
! ATGTACATGTCATTACATAT+GGG - chr3_1:88503493-88503512 Msa0385050:intron 25.0%
!!! CATTTTAGAAACTCATTAAG+AGG - chr3_1:88503602-88503621 Msa0385050:intron 25.0%
! TATCATAGCCAAAATCTATT+GGG + chr3_1:88504334-88504353 None:intergenic 25.0%
! TGGTGCAGAATAAAAATATT+TGG - chr3_1:88504488-88504507 Msa0385050:intron 25.0%
! ATTAGATCAAATGCATCTAA+AGG - chr3_1:88504581-88504600 Msa0385050:intron 25.0%
!!! TTGAGACTTTTGAAACTTAA+AGG + chr3_1:88504924-88504943 None:intergenic 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG + chr3_1:88504906-88504925 None:intergenic 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG + chr3_1:88504905-88504924 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr3_1:88504697-88504716 None:intergenic 25.0%
!!! TTTCAAACAAGTCATTTTAG+AGG - chr3_1:88504713-88504732 Msa0385050:intron 25.0%
!!! ATCTTTTTAGGTATGACAAA+TGG + chr3_1:88504779-88504798 None:intergenic 25.0%
!!! ACTAATTTTAAGTGGATGTT+AGG - chr3_1:88504800-88504819 Msa0385050:intron 25.0%
!!! TTGAGACTTTTGAAACTTAA+AGG - chr3_1:88504924-88504943 Msa0385050:intron 25.0%
!!! GCAATGTTTTAAATTGAGAA+AGG - chr3_1:88505569-88505588 Msa0385050:intron 25.0%
!! GAAATTCAATAGTTTGCAAT+TGG + chr3_1:88505624-88505643 None:intergenic 25.0%
! AATTTCTATTAACTCTGTAC+TGG - chr3_1:88505638-88505657 Msa0385050:intron 25.0%
!!! GAGAAAACAATTTGATTTTG+TGG + chr3_1:88505750-88505769 None:intergenic 25.0%
! TATAAGTAAAAAACTGGAGA+AGG + chr3_1:88505866-88505885 None:intergenic 25.0%
! TTTGTGTAGAATTTACACTT+GGG + chr3_1:88505949-88505968 None:intergenic 25.0%
! AGATAGAATTACATATAGGT+AGG - chr3_1:88506252-88506271 Msa0385050:intron 25.0%
! GAAGTGACTAAAAAAGTAAA+GGG + chr3_1:88506499-88506518 None:intergenic 25.0%
! AGAAGTGACTAAAAAAGTAA+AGG + chr3_1:88506500-88506519 None:intergenic 25.0%
ATGCATTTCCTATAATGGTA+TGG + chr3_1:88501726-88501745 None:intergenic 30.0%
CATAGTAAACAACAACAATC+AGG - chr3_1:88501842-88501861 Msa0385050:three_prime_UTR 30.0%
AGATAGATAGATAGATAGCT+AGG - chr3_1:88501878-88501897 Msa0385050:three_prime_UTR 30.0%
AAGTAACTTACTCAAAACGA+AGG - chr3_1:88501967-88501986 Msa0385050:CDS 30.0%
ATAAATAGAGAAGCTAGCTA+GGG + chr3_1:88502124-88502143 None:intergenic 30.0%
AGAAAAAGGAAAAGGGAAAA+TGG + chr3_1:88502276-88502295 None:intergenic 30.0%
AAGTTCTCTTGCATATTCTA+TGG + chr3_1:88502347-88502366 None:intergenic 30.0%
AGAAACTGAAAGATGTCAAT+AGG - chr3_1:88502369-88502388 Msa0385050:CDS 30.0%
TCAACTAAATTCTATGTCTC+TGG + chr3_1:88502747-88502766 None:intergenic 30.0%
TAAAATGCATTAATGAGTCC+TGG - chr3_1:88503014-88503033 Msa0385050:intron 30.0%
! GTTTAGAGTATAATATCACC+AGG + chr3_1:88503035-88503054 None:intergenic 30.0%
TTCAACTCAATAATCGAACT+CGG + chr3_1:88503134-88503153 None:intergenic 30.0%
ATGTGTAAATTACACATGAG+AGG + chr3_1:88503311-88503330 None:intergenic 30.0%
AAACTAAGATAAGCTCATGT+TGG + chr3_1:88503538-88503557 None:intergenic 30.0%
TACACATAAGTAGACAAGTT+AGG - chr3_1:88503700-88503719 Msa0385050:intron 30.0%
ACACATAAGTAGACAAGTTA+GGG - chr3_1:88503701-88503720 Msa0385050:intron 30.0%
ATAAAAGCTGCATTGTAAAG+TGG + chr3_1:88504089-88504108 None:intergenic 30.0%
!! AGTGAAGTAGGGTTTTATAA+AGG - chr3_1:88504121-88504140 Msa0385050:intron 30.0%
!!! CATATGCTATTTTTTAAGCC+CGG + chr3_1:88504148-88504167 None:intergenic 30.0%
! AACATTTGAAGTGTGACTAT+TGG - chr3_1:88504279-88504298 Msa0385050:intron 30.0%
GTATCATAGCCAAAATCTAT+TGG + chr3_1:88504335-88504354 None:intergenic 30.0%
!! CTTACAAAGTTGACTTGTAA+AGG - chr3_1:88504381-88504400 Msa0385050:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + chr3_1:88504955-88504974 None:intergenic 30.0%
GAAACTTAAAGGATCACTTT+GGG + chr3_1:88504628-88504647 None:intergenic 30.0%
TGAAACTTAAAGGATCACTT+TGG + chr3_1:88504629-88504648 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + chr3_1:88504668-88504687 None:intergenic 30.0%
!!! TTTTTAGGTATGACAAATGG+TGG + chr3_1:88504776-88504795 None:intergenic 30.0%
CATATTGTAGATAGCATAGT+TGG + chr3_1:88504867-88504886 None:intergenic 30.0%
GGCCGTTCAAAAAAATTATT+TGG - chr3_1:88505096-88505115 Msa0385050:intron 30.0%
!! TTTTCTGAGGATTACTCAAT+TGG - chr3_1:88505202-88505221 Msa0385050:intron 30.0%
!!! AACTAACTTCGATGCTTTTT+TGG - chr3_1:88505359-88505378 Msa0385050:intron 30.0%
ATGAAATCACAACTTACAAC+AGG + chr3_1:88505516-88505535 None:intergenic 30.0%
GTTTGTGTAGAATTTACACT+TGG + chr3_1:88505950-88505969 None:intergenic 30.0%
TAACGAGTTTCTTATGACAA+TGG - chr3_1:88506031-88506050 Msa0385050:intron 30.0%
!! TGACAATGGATTACAGTATA+AGG - chr3_1:88506045-88506064 Msa0385050:CDS 30.0%
GTAGTTTAATAATGAGAGAG+AGG - chr3_1:88506177-88506196 Msa0385050:intron 30.0%
GTGATTGGATTCTCAAATTT+AGG - chr3_1:88506386-88506405 Msa0385050:CDS 30.0%
CTAAAAAAGTAAAGGGTAAG+TGG + chr3_1:88506492-88506511 None:intergenic 30.0%
TTATTGTTGGAAAGTGATTG+TGG + chr3_1:88506547-88506566 None:intergenic 30.0%
GAGAGATGCATTTCCTATAA+TGG + chr3_1:88501731-88501750 None:intergenic 35.0%
CCAAGACTTATCTATACAGA+GGG - chr3_1:88501790-88501809 Msa0385050:three_prime_UTR 35.0%
AGATAGATAGATAGCTAGGT+AGG - chr3_1:88501882-88501901 Msa0385050:three_prime_UTR 35.0%
TGTTCTCTATTCTCTTGATC+TGG + chr3_1:88501935-88501954 None:intergenic 35.0%
ACTTACTCAAAACGAAGGAA+TGG - chr3_1:88501972-88501991 Msa0385050:CDS 35.0%
!! AAGGAATGGTCTTTTCAAGA+AGG - chr3_1:88501986-88502005 Msa0385050:CDS 35.0%
GTTAGAGAAAGAAACATACG+AGG + chr3_1:88502102-88502121 None:intergenic 35.0%
GATAAATAGAGAAGCTAGCT+AGG + chr3_1:88502125-88502144 None:intergenic 35.0%
GATCAATATCAGATGACTGT+AGG - chr3_1:88502215-88502234 Msa0385050:intron 35.0%
!! GTCGTACAAAATGGACTTTT+AGG - chr3_1:88502799-88502818 Msa0385050:intron 35.0%
ATTCTGCCTTGTAGCTAATT+TGG - chr3_1:88502882-88502901 Msa0385050:intron 35.0%
! TATTTTCATCAGCTCACAGA+TGG + chr3_1:88503458-88503477 None:intergenic 35.0%
TAAGATAAGCTCATGTTGGT+TGG + chr3_1:88503534-88503553 None:intergenic 35.0%
GGTCAATTGAATTAGACTTG+TGG - chr3_1:88503768-88503787 Msa0385050:intron 35.0%
!! AGTAGGGTTTTATAAAGGTC+CGG - chr3_1:88504126-88504145 Msa0385050:intron 35.0%
GACAAGTAATGTGTTAGACT+CGG - chr3_1:88504167-88504186 Msa0385050:intron 35.0%
ATGTTCAATCTTAGACGTGA+GGG + chr3_1:88504264-88504283 None:intergenic 35.0%
AATGTTCAATCTTAGACGTG+AGG + chr3_1:88504265-88504284 None:intergenic 35.0%
! TTCTTTCACACTTTTGTGTG+TGG + chr3_1:88504549-88504568 None:intergenic 35.0%
TGAAACTTAAAGGACCACTT+TGG - chr3_1:88504934-88504953 Msa0385050:intron 35.0%
GAAACTTAAAGGACCACTTT+GGG - chr3_1:88504935-88504954 Msa0385050:intron 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG + chr3_1:88504612-88504631 None:intergenic 35.0%
TATCGGTCAAATGCATCTAA+AGG + chr3_1:88504981-88505000 None:intergenic 35.0%
TGAACGGCCTAGATAATTAT+TGG + chr3_1:88505085-88505104 None:intergenic 35.0%
! GTGAAAAGTATGCCAACATT+CGG - chr3_1:88505118-88505137 Msa0385050:intron 35.0%
TACCGAGTCACAATTTCAAT+AGG - chr3_1:88505244-88505263 Msa0385050:intron 35.0%
TGCCTATTGAAATTGTGACT+CGG + chr3_1:88505249-88505268 None:intergenic 35.0%
! TTTTGTCCAGATATTGTGAG+TGG - chr3_1:88505269-88505288 Msa0385050:intron 35.0%
AGATATTGTGAGTGGTTGAT+GGG - chr3_1:88505277-88505296 Msa0385050:intron 35.0%
ATTGCATGATGCCTTGAATT+TGG + chr3_1:88505327-88505346 None:intergenic 35.0%
! AATTCAAGGCATCATGCAAT+TGG - chr3_1:88505327-88505346 Msa0385050:intron 35.0%
!! AAAAGCATCGAAGTTAGTTG+TGG + chr3_1:88505358-88505377 None:intergenic 35.0%
TCATGTTACTATCATGGACA+TGG + chr3_1:88505447-88505466 None:intergenic 35.0%
TCCATGATAGTAACATGAGA+TGG - chr3_1:88505449-88505468 Msa0385050:intron 35.0%
CCATGATAGTAACATGAGAT+GGG - chr3_1:88505450-88505469 Msa0385050:intron 35.0%
ATCACAACTTACAACAGGAT+TGG + chr3_1:88505511-88505530 None:intergenic 35.0%
! TTTGCAATTGGTTCTTGTAG+TGG + chr3_1:88505612-88505631 None:intergenic 35.0%
AGGAGTTCAGTTCAAATTGT+TGG - chr3_1:88505710-88505729 Msa0385050:intron 35.0%
ACTAGCAAGCAATTTAGCAT+CGG + chr3_1:88505803-88505822 None:intergenic 35.0%
TACACTTGGGACAAATTGAT+TGG + chr3_1:88505936-88505955 None:intergenic 35.0%
TAACAAACTAACAAGGTGAG+AGG + chr3_1:88505972-88505991 None:intergenic 35.0%
TCATAAGAAACTCGTTAGCA+TGG + chr3_1:88506028-88506047 None:intergenic 35.0%
CAACTTTACCTTCTTCCTTT+GGG + chr3_1:88506092-88506111 None:intergenic 35.0%
TCAACTTTACCTTCTTCCTT+TGG + chr3_1:88506093-88506112 None:intergenic 35.0%
!!! AGATCCACGTTTTGAAATGA+TGG - chr3_1:88506340-88506359 Msa0385050:intron 35.0%
TTGTCCATCATTTCAAAACG+TGG + chr3_1:88506347-88506366 None:intergenic 35.0%
!!! CGTTTTGAAATGATGGACAA+TGG - chr3_1:88506347-88506366 Msa0385050:intron 35.0%
!! TTTGAAATGATGGACAATGG+AGG - chr3_1:88506350-88506369 Msa0385050:intron 35.0%
!! TTGAAATGATGGACAATGGA+GGG - chr3_1:88506351-88506370 Msa0385050:intron 35.0%
GGCAAAGACCATACCATTAT+AGG - chr3_1:88501715-88501734 Msa0385050:three_prime_UTR 40.0%
GCCAAGACTTATCTATACAG+AGG - chr3_1:88501789-88501808 Msa0385050:three_prime_UTR 40.0%
CCCTCTGTATAGATAAGTCT+TGG + chr3_1:88501793-88501812 None:intergenic 40.0%
GACTTATCTATACAGAGGGT+AGG - chr3_1:88501794-88501813 Msa0385050:three_prime_UTR 40.0%
CTAGGTAGGTTATCTAGCTA+TGG - chr3_1:88501896-88501915 Msa0385050:three_prime_UTR 40.0%
ACAAAGAACAGTGAGCTCAT+TGG + chr3_1:88502012-88502031 None:intergenic 40.0%
CACTGTTCTTTGTGATGCTA+AGG - chr3_1:88502019-88502038 Msa0385050:CDS 40.0%
ATTATCATGTTCTCCAGCAC+TGG - chr3_1:88502047-88502066 Msa0385050:CDS 40.0%
AGAGAAAGAAACATACGAGG+CGG + chr3_1:88502099-88502118 None:intergenic 40.0%
TGACTGTAGGAATTGATCTG+TGG - chr3_1:88502228-88502247 Msa0385050:intron 40.0%
TCTGTGGAACTCTCATTATG+AGG - chr3_1:88502244-88502263 Msa0385050:CDS 40.0%
TGTCAATAGGAATCTTCGCA+AGG - chr3_1:88502382-88502401 Msa0385050:intron 40.0%
TGTGTGTTGTACTACGTACT+AGG - chr3_1:88502487-88502506 Msa0385050:intron 40.0%
ATGTCTGAATGATCTGAGCA+TGG - chr3_1:88502524-88502543 Msa0385050:intron 40.0%
TCTTGAGGATGAAATGGACA+AGG - chr3_1:88502560-88502579 Msa0385050:intron 40.0%
!! GTAGGGTTTTATAAAGGTCC+GGG - chr3_1:88504127-88504146 Msa0385050:intron 40.0%
AGTGTGACTATTGGCATGAT+AGG - chr3_1:88504288-88504307 Msa0385050:intron 40.0%
GTGTGACTATTGGCATGATA+GGG - chr3_1:88504289-88504308 Msa0385050:intron 40.0%
TGTGACTATTGGCATGATAG+GGG - chr3_1:88504290-88504309 Msa0385050:intron 40.0%
! GCAAGTGACCCAATAGATTT+TGG - chr3_1:88504323-88504342 Msa0385050:intron 40.0%
!! AGTTGACTTGTAAAGGTCGA+TGG - chr3_1:88504388-88504407 Msa0385050:intron 40.0%
TGGATGTTAGGAGCAAGATT+TGG - chr3_1:88504812-88504831 Msa0385050:intron 40.0%
TGGTACCAAAGATGAGTTCA+AGG - chr3_1:88504832-88504851 Msa0385050:intron 40.0%
TGCTTCCTTGAACTCATCTT+TGG + chr3_1:88504840-88504859 None:intergenic 40.0%
CCAACATTCGGCTCAAAATT+GGG - chr3_1:88505130-88505149 Msa0385050:intron 40.0%
TGGCAAATGAATGCAACAGA+GGG + chr3_1:88505166-88505185 None:intergenic 40.0%
TTGGCAAATGAATGCAACAG+AGG + chr3_1:88505167-88505186 None:intergenic 40.0%
TCGGTACGTTGAACAAAAGA+AGG + chr3_1:88505230-88505249 None:intergenic 40.0%
CATCAACCACTCACAATATC+TGG + chr3_1:88505278-88505297 None:intergenic 40.0%
CAGATATTGTGAGTGGTTGA+TGG - chr3_1:88505276-88505295 Msa0385050:intron 40.0%
! GATATTGTGAGTGGTTGATG+GGG - chr3_1:88505278-88505297 Msa0385050:intron 40.0%
CACCTTGATTGCCAAATTCA+AGG - chr3_1:88505313-88505332 Msa0385050:intron 40.0%
TGCCTTGAATTTGGCAATCA+AGG + chr3_1:88505318-88505337 None:intergenic 40.0%
CCCATCTCATGTTACTATCA+TGG + chr3_1:88505453-88505472 None:intergenic 40.0%
ATAGTAACATGAGATGGGCA+TGG - chr3_1:88505455-88505474 Msa0385050:intron 40.0%
ACAACTTACAACAGGATTGG+CGG + chr3_1:88505508-88505527 None:intergenic 40.0%
! CTGTACTGGCCTAATAACTT+TGG - chr3_1:88505652-88505671 Msa0385050:intron 40.0%
!!! AGTACCAATTTTTCGAGCAG+CGG - chr3_1:88505820-88505839 Msa0385050:intron 40.0%
CAAATCAGATTGACACCCAA+AGG - chr3_1:88506074-88506093 Msa0385050:CDS 40.0%
!! TGAAATGATGGACAATGGAG+GGG - chr3_1:88506352-88506371 Msa0385050:CDS 40.0%
TTGTGAGGATTAGGATGAGT+AGG + chr3_1:88506440-88506459 None:intergenic 40.0%
ACTCATCCTAATCCTCACAA+TGG - chr3_1:88506440-88506459 Msa0385050:CDS 40.0%
ACAGAGGGTAGGAACTAGAA+AGG - chr3_1:88501805-88501824 Msa0385050:three_prime_UTR 45.0%
AAAGAAACATACGAGGCGGA+GGG + chr3_1:88502095-88502114 None:intergenic 45.0%
GGAATCTTCGCAAGGAGATT+AGG - chr3_1:88502390-88502409 Msa0385050:intron 45.0%
TTGTACTACGTACTAGGCAG+AGG - chr3_1:88502493-88502512 Msa0385050:intron 45.0%
GAGGCTTCTTGAGGATGAAA+TGG - chr3_1:88502554-88502573 Msa0385050:intron 45.0%
TATTGGAGAAGGGAATCGAG+AGG - chr3_1:88503276-88503295 Msa0385050:intron 45.0%
ATTGGAGAAGGGAATCGAGA+GGG - chr3_1:88503277-88503296 Msa0385050:intron 45.0%
! AATCTTAGACGTGAGGGTGT+GGG + chr3_1:88504258-88504277 None:intergenic 45.0%
GCCAACATTCGGCTCAAAAT+TGG - chr3_1:88505129-88505148 Msa0385050:intron 45.0%
! CCCAATTTTGAGCCGAATGT+TGG + chr3_1:88505133-88505152 None:intergenic 45.0%
TGAATGCAACAGAGGGAACT+TGG + chr3_1:88505159-88505178 None:intergenic 45.0%
!! GCATGGGGAGTACCAAAATT+GGG - chr3_1:88505477-88505496 Msa0385050:intron 45.0%
!! CATGGGGAGTACCAAAATTG+GGG - chr3_1:88505478-88505497 Msa0385050:intron 45.0%
!! ATGGGGAGTACCAAAATTGG+GGG - chr3_1:88505479-88505498 Msa0385050:intron 45.0%
! CAACTTACAACAGGATTGGC+GGG + chr3_1:88505507-88505526 None:intergenic 45.0%
TTTGCCGCTGCTCGAAAAAT+TGG + chr3_1:88505827-88505846 None:intergenic 45.0%
GGAGAAGGAGACACATATAG+AGG + chr3_1:88505851-88505870 None:intergenic 45.0%
GATTGACACCCAAAGGAAGA+AGG - chr3_1:88506081-88506100 Msa0385050:CDS 45.0%
AAGCTCAATGCAAACATGCG+TGG + chr3_1:88506413-88506432 None:intergenic 45.0%
CATCCTAATCCTCACAATGG+AGG - chr3_1:88506443-88506462 Msa0385050:CDS 45.0%
!! ATATTAAAAGTTATATTTAT+TGG - chr3_1:88502309-88502328 Msa0385050:intron 5.0%
TGGCGTGCAATCACAGACAA+TGG + chr3_1:88501773-88501792 None:intergenic 50.0%
GGTTATCTAGCTATGGCTCG+AGG - chr3_1:88501903-88501922 Msa0385050:three_prime_UTR 50.0%
TTCATGAAGCTTGCCAGTGC+TGG + chr3_1:88502063-88502082 None:intergenic 50.0%
AAGAAACATACGAGGCGGAG+GGG + chr3_1:88502094-88502113 None:intergenic 50.0%
GAAAGAAACATACGAGGCGG+AGG + chr3_1:88502096-88502115 None:intergenic 50.0%
ACTACGTACTAGGCAGAGGA+TGG - chr3_1:88502497-88502516 Msa0385050:intron 50.0%
CTACGTACTAGGCAGAGGAT+GGG - chr3_1:88502498-88502517 Msa0385050:intron 50.0%
TACGTACTAGGCAGAGGATG+GGG - chr3_1:88502499-88502518 Msa0385050:intron 50.0%
ATCTGAGCATGGAAGAGCTG+AGG - chr3_1:88502535-88502554 Msa0385050:intron 50.0%
TGAAATGGACAAGGCTGCCA+AGG - chr3_1:88502569-88502588 Msa0385050:intron 50.0%
TCGCAGCGTGTCGTACAAAA+TGG - chr3_1:88502790-88502809 Msa0385050:intron 50.0%
CTTCACCAACAGCGAATCGT+CGG - chr3_1:88503102-88503121 Msa0385050:intron 50.0%
TTCACCAACAGCGAATCGTC+GGG - chr3_1:88503103-88503122 Msa0385050:intron 50.0%
TTGGAGAAGGGAATCGAGAG+GGG - chr3_1:88503278-88503297 Msa0385050:intron 50.0%
CTTAGGTGGACGTCGTGATT+GGG + chr3_1:88503734-88503753 None:intergenic 50.0%
ACTTAGGTGGACGTCGTGAT+TGG + chr3_1:88503735-88503754 None:intergenic 50.0%
CAATCTTAGACGTGAGGGTG+TGG + chr3_1:88504259-88504278 None:intergenic 50.0%
AACATGAGATGGGCATGGCA+TGG - chr3_1:88505460-88505479 Msa0385050:intron 50.0%
ACATGAGATGGGCATGGCAT+GGG - chr3_1:88505461-88505480 Msa0385050:intron 50.0%
!! GGCATGGGGAGTACCAAAAT+TGG - chr3_1:88505476-88505495 Msa0385050:intron 50.0%
AGAAAGGGACCACACAGTAC+TGG - chr3_1:88505585-88505604 Msa0385050:intron 50.0%
!! TGTAGTGGACCAGTACTGTG+TGG + chr3_1:88505597-88505616 None:intergenic 50.0%
GCTCCTCCATTGTGAGGATT+AGG + chr3_1:88506449-88506468 None:intergenic 50.0%
ACGTACTAGGCAGAGGATGG+GGG - chr3_1:88502500-88502519 Msa0385050:intron 55.0%
GGAAGAGCTGAGGCTTCTTG+AGG - chr3_1:88502545-88502564 Msa0385050:intron 55.0%
CTTGCGCTCACGAATAGCCT+TGG + chr3_1:88502589-88502608 None:intergenic 55.0%
CAAGGCTATTCGTGAGCGCA+AGG - chr3_1:88502587-88502606 Msa0385050:intron 55.0%
TTCTCCCGACGATTCGCTGT+TGG + chr3_1:88503110-88503129 None:intergenic 55.0%
GAAGGGAATCGAGAGGGGAA+TGG - chr3_1:88503283-88503302 Msa0385050:intron 55.0%
! TTAGACGTGAGGGTGTGGGT+GGG + chr3_1:88504254-88504273 None:intergenic 55.0%
CATGAGATGGGCATGGCATG+GGG - chr3_1:88505462-88505481 Msa0385050:intron 55.0%
! GGGGAGTACGAGTCTGTGAT+TGG - chr3_1:88506371-88506390 Msa0385050:CDS 55.0%
GCTGATGCTCCTCCATTGTG+AGG + chr3_1:88506455-88506474 None:intergenic 55.0%
AGGGTAAGTGGTGAGATCCG+AGG + chr3_1:88506480-88506499 None:intergenic 55.0%
! GTGAGGGTGTGGGTGGGAAT+GGG + chr3_1:88504248-88504267 None:intergenic 60.0%
! CTTAGACGTGAGGGTGTGGG+TGG + chr3_1:88504255-88504274 None:intergenic 60.0%
! TTGGCGGGAGCCCCCAATTT+TGG + chr3_1:88505492-88505511 None:intergenic 60.0%
!! TGGAGGAGCATCAGCTGCCT+CGG - chr3_1:88506460-88506479 Msa0385050:CDS 60.0%
! CGTGAGGGTGTGGGTGGGAA+TGG + chr3_1:88504249-88504268 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88501715 88506739 88501715 ID=Msa0385050;Name=Msa0385050
chr3_1 mRNA 88501715 88506739 88501715 ID=Msa0385050-mRNA-1;Parent=Msa0385050;Name=Msa0385050-mRNA-1;_AED=0.16;_eAED=0.16;_QI=200|1|1|1|1|1|7|228|229
chr3_1 exon 88501715 88502128 88501715 ID=Msa0385050-mRNA-1:exon:23924;Parent=Msa0385050-mRNA-1
chr3_1 exon 88502229 88502273 88502229 ID=Msa0385050-mRNA-1:exon:23923;Parent=Msa0385050-mRNA-1
chr3_1 exon 88502352 88502393 88502352 ID=Msa0385050-mRNA-1:exon:23922;Parent=Msa0385050-mRNA-1
chr3_1 exon 88505846 88505945 88505846 ID=Msa0385050-mRNA-1:exon:23921;Parent=Msa0385050-mRNA-1
chr3_1 exon 88506043 88506104 88506043 ID=Msa0385050-mRNA-1:exon:23920;Parent=Msa0385050-mRNA-1
chr3_1 exon 88506189 88506255 88506189 ID=Msa0385050-mRNA-1:exon:23919;Parent=Msa0385050-mRNA-1
chr3_1 exon 88506352 88506739 88506352 ID=Msa0385050-mRNA-1:exon:23918;Parent=Msa0385050-mRNA-1
chr3_1 five_prime_UTR 88506540 88506739 88506540 ID=Msa0385050-mRNA-1:five_prime_utr;Parent=Msa0385050-mRNA-1
chr3_1 CDS 88506352 88506539 88506352 ID=Msa0385050-mRNA-1:cds;Parent=Msa0385050-mRNA-1
chr3_1 CDS 88506189 88506255 88506189 ID=Msa0385050-mRNA-1:cds;Parent=Msa0385050-mRNA-1
chr3_1 CDS 88506043 88506104 88506043 ID=Msa0385050-mRNA-1:cds;Parent=Msa0385050-mRNA-1
chr3_1 CDS 88505846 88505945 88505846 ID=Msa0385050-mRNA-1:cds;Parent=Msa0385050-mRNA-1
chr3_1 CDS 88502352 88502393 88502352 ID=Msa0385050-mRNA-1:cds;Parent=Msa0385050-mRNA-1
chr3_1 CDS 88502229 88502273 88502229 ID=Msa0385050-mRNA-1:cds;Parent=Msa0385050-mRNA-1
chr3_1 CDS 88501943 88502128 88501943 ID=Msa0385050-mRNA-1:cds;Parent=Msa0385050-mRNA-1
chr3_1 three_prime_UTR 88501715 88501942 88501715 ID=Msa0385050-mRNA-1:three_prime_utr;Parent=Msa0385050-mRNA-1
Gene Sequence

>Msa0385050

ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACGAACAGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCCAATGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATCATGTTCTCCAGCACTGGCAAGCTTCATGAATACATTAGCCCCTCCGCCTCAACAAAGCAGTTTTTCGATCAATATCAGATGACTGTAGGAATTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGAATGTCTGAATGATCTGAGCATGGAAGAGCTGAGGCTTCTTGAGGATGAAATGGACAAGGCTGCCAAGGCTATTCGTGAGCGCAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGAAATGATGGACAATGGAGGGGAGTACGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTACAGCCTACTCATCCTAATCCTCACAATGGAGGAGCATCAGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG
Protein sequence

>Msa0385050

MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF*