AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479500 MtrunA17_Chr3g0142191 100.000 229 0 0 1 229 1 229 4.86e-175 479
Msa0479500 MtrunA17_Chr5g0404951 54.091 220 95 4 1 215 1 219 1.38e-75 228
Msa0479500 MtrunA17_Chr3g0125241 45.775 142 77 0 1 142 26 167 1.86e-43 145
Msa0479500 MtrunA17_Chr1g0159661 43.662 142 80 0 1 142 1 142 3.38e-39 133
Msa0479500 MtrunA17_Chr2g0279821 41.463 164 80 3 1 155 1 157 3.01e-35 125
Msa0479500 MtrunA17_Chr8g0351041 43.125 160 81 3 1 153 1 157 2.73e-33 117
Msa0479500 MtrunA17_Chr4g0049541 37.313 201 102 4 1 192 1 186 8.81e-33 118
Msa0479500 MtrunA17_Chr2g0284911 39.801 201 102 5 1 187 16 211 1.10e-32 119
Msa0479500 MtrunA17_Chr8g0380021 42.424 165 89 3 1 162 17 178 1.49e-32 118
Msa0479500 MtrunA17_Chr4g0057151 42.581 155 78 3 1 148 1 151 1.67e-32 117
Msa0479500 MtrunA17_Chr8g0351051 35.443 237 125 7 1 228 1 218 2.96e-32 117
Msa0479500 MtrunA17_Chr8g0351031 41.250 160 84 3 1 153 1 157 1.43e-31 115
Msa0479500 MtrunA17_Chr3g0097101 38.857 175 91 4 1 166 16 183 1.47e-31 115
Msa0479500 MtrunA17_Chr3g0122251 41.615 161 86 2 1 153 1 161 2.20e-31 115
Msa0479500 MtrunA17_Chr7g0246431 41.818 165 81 4 1 156 1 159 3.43e-31 114
Msa0479500 MtrunA17_Chr4g0061691 42.353 170 91 3 1 165 1 168 4.99e-31 114
Msa0479500 MtrunA17_Chr7g0220121 39.205 176 89 4 1 166 1 168 7.20e-31 114
Msa0479500 MtrunA17_Chr3g0077501 37.576 165 82 3 1 153 1 156 1.02e-30 113
Msa0479500 MtrunA17_Chr5g0420081 39.429 175 96 3 1 168 1 172 2.84e-30 112
Msa0479500 MtrunA17_Chr5g0411691 38.854 157 77 3 1 147 1 148 6.36e-30 111
Msa0479500 MtrunA17_Chr7g0220111 42.405 158 85 3 1 153 1 157 1.86e-29 110
Msa0479500 MtrunA17_Chr8g0366231 40.854 164 79 5 1 153 1 157 2.78e-29 109
Msa0479500 MtrunA17_Chr6g0474371 38.235 170 98 2 1 164 1 169 4.45e-29 107
Msa0479500 MtrunA17_Chr1g0164791 35.404 161 96 1 1 153 1 161 4.56e-29 108
Msa0479500 MtrunA17_Chr6g0455511 41.139 158 87 3 1 153 1 157 1.29e-28 108
Msa0479500 MtrunA17_Chr5g0420091 40.252 159 88 3 1 153 1 158 1.08e-27 105
Msa0479500 MtrunA17_Chr5g0412461 41.436 181 87 5 1 170 1 173 1.47e-27 105
Msa0479500 MtrunA17_Chr4g0018421 35.632 174 104 4 1 168 1 172 4.01e-26 100
Msa0479500 MtrunA17_Chr4g0061671 38.411 151 89 2 1 148 1 150 6.63e-26 99.4
Msa0479500 MtrunA17_Chr5g0412271 42.073 164 75 5 1 152 1 156 1.08e-25 100
Msa0479500 MtrunA17_Chr4g0049901 38.462 169 77 4 1 153 27 184 7.32e-25 98.2
Msa0479500 MtrunA17_Chr5g0427401 39.752 161 82 4 1 153 1 154 1.52e-24 97.1
Msa0479500 MtrunA17_Chr1g0204111 33.529 170 105 2 1 164 17 184 3.61e-24 96.7
Msa0479500 MtrunA17_Chr1g0173161 68.333 60 19 0 1 60 1 60 4.11e-24 91.7
Msa0479500 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 6.16e-24 90.5
Msa0479500 MtrunA17_Chr4g0020221 38.994 159 86 3 1 151 1 156 7.25e-23 93.2
Msa0479500 MtrunA17_Chr2g0308251 64.407 59 21 0 1 59 1 59 1.78e-22 87.8
Msa0479500 MtrunA17_Chr7g0246381 62.903 62 23 0 1 62 1 62 5.90e-22 85.9
Msa0479500 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 7.06e-22 86.7
Msa0479500 MtrunA17_Chr4g0044071 63.158 57 21 0 1 57 1 57 1.01e-19 81.3
Msa0479500 MtrunA17_Chr5g0425191 63.158 57 21 0 1 57 1 57 1.14e-19 80.9
Msa0479500 MtrunA17_Chr3g0134451 42.400 125 62 4 1 122 1 118 2.22e-19 85.1
Msa0479500 MtrunA17_Chr8g0379021 40.157 127 60 3 2 127 12 123 9.39e-19 80.5
Msa0479500 MtrunA17_Chr1g0166611 60.000 55 22 0 13 67 17 71 1.41e-17 76.3
Msa0479500 MtrunA17_Chr8g0357771 36.691 139 81 3 1 133 1 138 3.35e-17 76.6
Msa0479500 MtrunA17_Chr2g0333981 35.443 158 81 7 1 143 11 162 3.21e-16 73.6
Msa0479500 MtrunA17_Chr4g0052061 33.333 135 69 4 1 135 1 114 1.50e-15 71.6
Msa0479500 MtrunA17_Chr5g0417661 56.604 53 23 0 1 53 56 108 2.49e-15 70.1
Msa0479500 MtrunA17_Chr1g0175611 48.387 62 32 0 1 62 1 62 5.67e-15 70.1
Msa0479500 MtrunA17_Chr4g0060841 56.604 53 23 0 1 53 1 53 5.68e-15 72.8
Msa0479500 MtrunA17_Chr8g0376821 48.387 62 32 0 1 62 1 62 6.16e-15 70.5
Msa0479500 MtrunA17_Chr4g0018951 39.669 121 55 5 14 121 24 139 8.56e-15 69.7
Msa0479500 MtrunA17_Chr3g0089141 33.835 133 74 3 2 133 9 128 1.07e-14 70.9
Msa0479500 MtrunA17_Chr1g0208581 49.206 63 32 0 2 64 9 71 1.11e-14 70.5
Msa0479500 MtrunA17_Chr2g0325971 34.400 125 71 4 2 119 9 129 1.45e-14 70.5
Msa0479500 MtrunA17_Chr1g0208561 47.619 63 33 0 2 64 9 71 1.55e-14 70.1
Msa0479500 MtrunA17_Chr1g0169761 48.387 62 32 0 1 62 1 62 1.76e-14 68.9
Msa0479500 MtrunA17_Chr2g0317451 28.249 177 99 4 2 154 9 181 1.82e-14 70.1
Msa0479500 MtrunA17_Chr2g0317481 28.249 177 99 4 2 154 9 181 1.95e-14 70.1
Msa0479500 MtrunA17_Chr8g0356071 47.222 72 36 1 1 70 1 72 2.10e-14 68.6
Msa0479500 MtrunA17_Chr1g0180591 46.774 62 33 0 1 62 1 62 2.37e-14 68.9
Msa0479500 MtrunA17_Chr1g0175601 46.875 64 34 0 1 64 1 64 2.62e-14 68.6
Msa0479500 MtrunA17_Chr5g0419601 48.438 64 33 0 1 64 8 71 5.39e-14 68.9
Msa0479500 MtrunA17_Chr3g0099421 54.237 59 27 0 2 60 34 92 6.07e-14 68.9
Msa0479500 MtrunA17_Chr1g0149391 47.143 70 35 1 2 71 9 76 7.73e-14 68.6
Msa0479500 MtrunA17_Chr2g0292791 47.143 70 35 1 2 71 9 76 8.80e-14 68.2
Msa0479500 MtrunA17_Chr1g0187361 47.619 63 33 0 2 64 9 71 1.13e-13 68.2
Msa0479500 MtrunA17_Chr4g0052081 41.892 74 41 1 1 72 1 74 1.14e-13 67.0
Msa0479500 MtrunA17_Chr3g0099411 45.714 70 36 1 2 71 9 76 1.21e-13 67.8
Msa0479500 MtrunA17_Chr1g0206701 47.619 63 33 0 2 64 9 71 1.29e-13 67.8
Msa0479500 MtrunA17_Chr4g0074101 46.667 60 32 0 1 60 1 60 1.53e-13 67.0
Msa0479500 MtrunA17_Chr1g0206721 45.714 70 36 1 2 71 9 76 1.59e-13 67.8
Msa0479500 MtrunA17_Chr1g0188671 47.619 63 33 0 2 64 47 109 1.68e-13 68.2
Msa0479500 MtrunA17_Chr8g0355091 47.619 63 33 0 2 64 9 71 2.02e-13 67.4
Msa0479500 MtrunA17_Chr5g0422941 47.619 63 33 0 2 64 9 71 2.81e-13 67.0
Msa0479500 MtrunA17_Chr5g0422421 45.714 70 36 1 2 71 9 76 3.50e-13 66.6
Msa0479500 MtrunA17_Chr3g0111841 49.123 57 29 0 8 64 2 58 4.45e-13 62.4
Msa0479500 MtrunA17_Chr1g0206991 44.286 70 37 1 2 71 9 76 4.72e-13 65.5
Msa0479500 MtrunA17_Chr2g0300421 44.444 63 35 0 2 64 9 71 1.17e-12 63.9
Msa0479500 MtrunA17_Chr6g0457851 27.815 151 95 4 1 138 11 160 5.41e-12 64.3
Msa0479500 MtrunA17_Chr3g0119901 40.845 71 40 1 1 71 8 76 6.04e-12 62.8
Msa0479500 MtrunA17_Chr2g0300441 46.667 60 32 0 5 64 12 71 7.44e-12 62.8
Msa0479500 MtrunA17_Chr3g0085241 42.188 64 37 0 1 64 40 103 1.88e-11 62.0
Msa0479500 MtrunA17_Chr1g0206691 26.506 166 98 3 11 154 1 164 2.19e-11 61.2
Msa0479500 MtrunA17_Chr3g0089151 39.189 74 43 1 2 75 9 80 2.95e-11 59.3
Msa0479500 MtrunA17_Chr8g0345001 30.216 139 76 4 3 121 19 156 3.22e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479500 AT3G54340.1 56.897 232 95 2 1 228 1 231 7.58e-94 275
Msa0479500 AT5G20240.1 36.019 211 120 2 1 210 1 197 5.36e-40 137
Msa0479500 AT5G20240.2 43.662 142 80 0 1 142 1 142 1.07e-37 129
Msa0479500 AT4G18960.1 35.537 242 134 7 2 228 18 252 5.02e-36 128
Msa0479500 AT5G60910.1 44.068 177 91 3 1 171 1 175 3.94e-35 125
Msa0479500 AT4G11880.2 43.750 160 79 4 1 153 1 156 1.08e-33 119
Msa0479500 AT4G11880.3 43.750 160 79 4 1 153 1 156 1.08e-33 119
Msa0479500 AT5G13790.2 44.767 172 81 5 1 166 1 164 1.44e-33 122
Msa0479500 AT4G11880.4 46.000 150 70 4 1 143 1 146 2.73e-33 120
Msa0479500 AT4G11880.1 46.000 150 70 4 1 143 1 146 2.73e-33 120
Msa0479500 AT2G45660.2 42.515 167 71 3 1 153 1 156 2.90e-33 118
Msa0479500 AT2G45660.1 42.515 167 71 3 1 153 1 156 1.63e-32 117
Msa0479500 AT2G45650.1 34.188 234 132 6 1 228 1 218 4.31e-32 117
Msa0479500 AT4G22950.2 41.290 155 79 4 1 148 1 150 5.85e-32 115
Msa0479500 AT4G09960.1 38.650 163 83 3 1 153 1 156 8.14e-32 116
Msa0479500 AT4G09960.6 38.650 163 83 3 1 153 2 157 8.43e-32 116
Msa0479500 AT5G13790.1 43.195 169 85 4 1 166 1 161 1.09e-31 117
Msa0479500 AT4G09960.5 38.650 163 83 3 1 153 11 166 1.24e-31 116
Msa0479500 AT4G09960.3 38.650 163 83 3 1 153 27 182 1.80e-31 116
Msa0479500 AT4G22950.3 41.290 155 79 4 1 148 1 150 1.92e-31 115
Msa0479500 AT4G22950.1 41.290 155 79 4 1 148 1 150 1.92e-31 115
Msa0479500 AT3G57230.2 43.333 150 65 3 1 139 1 141 2.51e-31 112
Msa0479500 AT3G57230.1 40.361 166 79 3 1 155 1 157 3.17e-31 115
Msa0479500 AT3G57230.4 40.361 166 79 3 1 155 1 157 3.17e-31 115
Msa0479500 AT5G51870.1 38.547 179 94 7 1 169 1 173 4.65e-31 114
Msa0479500 AT4G37940.1 39.759 166 80 3 1 155 1 157 6.88e-31 114
Msa0479500 AT2G42830.2 39.130 161 87 3 1 154 16 172 1.50e-30 113
Msa0479500 AT2G42830.1 39.375 160 86 3 1 153 16 171 1.59e-30 113
Msa0479500 AT5G23260.2 36.410 195 119 2 1 190 1 195 1.66e-30 113
Msa0479500 AT5G51870.4 39.053 169 90 6 1 162 1 163 1.75e-30 112
Msa0479500 AT5G51870.3 38.983 177 92 7 1 167 11 181 1.88e-30 112
Msa0479500 AT4G09960.4 38.415 164 84 3 1 154 96 252 2.05e-30 115
Msa0479500 AT5G23260.4 36.410 195 119 2 1 190 17 211 2.68e-30 113
Msa0479500 AT4G09960.2 40.940 149 71 3 1 139 1 142 3.42e-30 112
Msa0479500 AT3G58780.1 38.750 160 87 3 1 153 16 171 4.52e-30 112
Msa0479500 AT3G58780.5 38.750 160 87 3 1 153 22 177 4.80e-30 112
Msa0479500 AT5G51870.2 39.490 157 77 6 1 146 1 150 6.14e-30 110
Msa0479500 AT3G61120.1 35.909 220 113 6 1 210 1 202 1.06e-29 111
Msa0479500 AT4G37940.4 40.244 164 77 4 1 152 1 155 1.06e-29 110
Msa0479500 AT4G24540.1 37.113 194 114 3 1 189 1 191 1.13e-29 110
Msa0479500 AT5G15800.1 43.396 159 83 4 1 153 1 158 1.29e-29 111
Msa0479500 AT5G23260.3 41.379 145 83 1 1 143 1 145 1.78e-29 110
Msa0479500 AT5G15800.2 43.396 159 83 4 1 153 1 158 1.89e-29 111
Msa0479500 AT4G37940.3 41.333 150 68 3 1 139 1 141 2.00e-29 108
Msa0479500 AT5G51870.5 39.490 157 77 6 1 146 24 173 2.04e-29 109
Msa0479500 AT3G58780.2 39.869 153 88 2 1 153 16 164 3.24e-29 110
Msa0479500 AT3G02310.2 43.046 151 82 2 1 147 1 151 4.21e-29 108
Msa0479500 AT3G02310.1 43.038 158 85 3 1 153 1 158 5.87e-29 109
Msa0479500 AT5G23260.1 41.667 144 82 1 1 142 17 160 8.37e-29 109
Msa0479500 AT3G58780.4 41.216 148 76 3 1 141 16 159 8.57e-29 109
Msa0479500 AT1G24260.1 42.593 162 82 5 1 153 1 160 3.05e-28 107
Msa0479500 AT1G24260.3 37.870 169 82 4 1 154 1 161 3.76e-28 107
Msa0479500 AT3G30260.1 40.523 153 83 4 1 147 1 151 5.74e-28 107
Msa0479500 AT2G22630.1 37.195 164 87 3 1 155 1 157 6.15e-28 106
Msa0479500 AT2G22630.2 37.195 164 87 3 1 155 1 157 6.15e-28 106
Msa0479500 AT1G24260.2 39.053 169 79 5 1 153 1 161 6.53e-28 107
Msa0479500 AT2G03710.3 37.748 151 90 1 1 147 1 151 9.78e-28 104
Msa0479500 AT2G03710.2 36.943 157 95 1 1 153 1 157 1.01e-27 106
Msa0479500 AT2G14210.1 40.506 158 75 3 1 147 1 150 1.13e-27 105
Msa0479500 AT2G03710.1 36.943 157 95 1 1 153 1 157 1.15e-27 106
Msa0479500 AT2G14210.2 40.506 158 75 3 1 147 1 150 1.28e-27 105
Msa0479500 AT1G26310.1 37.288 177 105 2 1 171 1 177 2.44e-27 105
Msa0479500 AT1G69120.2 41.250 160 84 4 1 153 1 157 2.76e-27 104
Msa0479500 AT1G69120.1 41.250 160 84 4 1 153 1 157 3.56e-27 105
Msa0479500 AT5G62165.17 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0479500 AT5G62165.12 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0479500 AT5G62165.11 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0479500 AT3G58780.3 34.426 183 88 3 1 153 16 196 7.48e-27 104
Msa0479500 AT2G22540.3 41.463 164 77 4 1 153 1 156 1.08e-26 103
Msa0479500 AT2G22540.1 41.463 164 77 4 1 153 1 156 1.08e-26 103
Msa0479500 AT3G57390.3 33.854 192 109 5 1 177 1 189 1.31e-26 102
Msa0479500 AT5G62165.6 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0479500 AT5G62165.9 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0479500 AT5G62165.7 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0479500 AT5G62165.8 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0479500 AT5G62165.13 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0479500 AT3G57390.1 33.854 192 109 5 1 177 1 189 2.34e-26 102
Msa0479500 AT5G51860.2 35.632 174 97 4 1 166 1 167 2.78e-26 101
Msa0479500 AT5G62165.3 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0479500 AT5G62165.1 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0479500 AT5G62165.2 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0479500 AT5G51860.1 35.632 174 97 4 1 166 1 167 4.29e-26 100
Msa0479500 AT5G62165.10 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
Msa0479500 AT5G62165.4 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
Msa0479500 AT2G22540.2 41.509 159 79 4 1 153 1 151 2.65e-24 97.1
Msa0479500 AT5G10140.4 32.749 171 89 3 1 160 1 156 2.19e-22 90.5
Msa0479500 AT5G62165.14 65.000 60 21 0 1 60 1 60 3.80e-22 87.8
Msa0479500 AT5G65070.1 30.851 188 113 3 1 175 1 184 2.76e-21 88.2
Msa0479500 AT1G71692.1 52.632 76 35 1 1 76 1 75 8.73e-21 87.0
Msa0479500 AT5G10140.2 33.333 159 80 3 1 148 1 144 1.19e-20 85.5
Msa0479500 AT5G10140.1 33.333 159 80 3 1 148 1 144 1.47e-20 86.3
Msa0479500 AT5G65070.4 33.813 139 88 2 1 139 1 135 3.19e-20 84.0
Msa0479500 AT5G10140.3 33.333 159 80 3 1 148 1 144 3.54e-20 84.7
Msa0479500 AT5G65050.2 31.928 166 95 5 1 159 1 155 1.74e-19 82.8
Msa0479500 AT5G65050.3 31.928 166 95 5 1 159 1 155 2.09e-19 83.2
Msa0479500 AT5G65050.1 31.447 159 91 5 1 152 1 148 4.30e-19 82.0
Msa0479500 AT5G65080.3 32.168 143 93 2 1 143 8 146 1.03e-18 81.3
Msa0479500 AT5G65070.5 29.730 185 97 5 1 155 1 182 1.13e-18 81.6
Msa0479500 AT5G65050.5 33.125 160 90 5 1 159 1 144 1.48e-18 80.5
Msa0479500 AT5G65070.2 29.358 218 108 6 1 175 1 215 2.70e-18 80.9
Msa0479500 AT5G65070.3 31.507 219 103 9 1 175 1 216 3.51e-18 80.5
Msa0479500 AT5G65080.2 32.867 143 91 3 1 143 8 145 3.78e-18 80.1
Msa0479500 AT1G22130.1 66.667 54 18 0 1 54 1 54 3.80e-18 82.0
Msa0479500 AT1G77980.1 64.815 54 19 0 1 54 1 54 9.13e-18 80.9
Msa0479500 AT5G65060.1 29.870 154 82 4 1 143 1 139 1.65e-16 75.5
Msa0479500 AT5G65060.2 43.836 73 40 1 1 73 1 72 1.99e-16 74.7
Msa0479500 AT5G65060.3 29.870 154 82 4 1 143 1 139 2.64e-16 74.7
Msa0479500 AT1G18750.4 58.491 53 22 0 1 53 1 53 7.31e-16 75.9
Msa0479500 AT1G18750.1 58.491 53 22 0 1 53 1 53 7.97e-16 75.9
Msa0479500 AT1G18750.3 58.491 53 22 0 1 53 1 53 1.01e-15 75.9
Msa0479500 AT1G77080.4 32.026 153 100 2 1 153 1 149 2.32e-15 72.4
Msa0479500 AT2G03060.3 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0479500 AT2G03060.7 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0479500 AT2G03060.1 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0479500 AT2G03060.2 39.785 93 55 1 1 93 1 92 4.06e-15 73.9
Msa0479500 AT1G77080.11 33.117 154 97 3 1 153 1 149 6.02e-15 70.9
Msa0479500 AT1G77080.5 32.026 153 100 2 1 153 1 149 6.56e-15 70.5
Msa0479500 AT1G31140.1 31.944 144 92 2 1 139 1 143 6.97e-15 71.2
Msa0479500 AT1G77080.12 31.250 160 90 2 1 154 1 146 7.57e-15 69.7
Msa0479500 AT1G77080.2 31.447 159 89 2 1 153 1 145 1.16e-14 70.1
Msa0479500 AT1G72350.1 30.612 147 85 2 2 131 43 189 1.36e-14 70.9
Msa0479500 AT1G01530.1 50.000 60 30 0 1 60 6 65 1.62e-14 70.9
Msa0479500 AT2G34440.1 43.836 73 39 1 1 71 1 73 2.19e-14 68.9
Msa0479500 AT1G31140.2 32.653 147 89 3 1 139 1 145 4.52e-14 68.9
Msa0479500 AT1G77950.3 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0479500 AT1G77950.2 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0479500 AT1G77950.1 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0479500 AT1G77950.4 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0479500 AT4G37435.1 52.632 57 27 0 1 57 1 57 1.38e-13 67.4
Msa0479500 AT3G66656.1 48.333 60 31 0 1 60 1 60 2.26e-13 66.6
Msa0479500 AT1G65360.1 45.161 62 34 0 1 62 6 67 5.27e-13 66.2
Msa0479500 AT1G69540.1 52.830 53 25 0 1 53 1 53 7.94e-13 67.0
Msa0479500 AT4G36590.1 50.820 61 30 0 2 62 7 67 8.44e-13 66.2
Msa0479500 AT5G60440.1 32.609 138 77 5 2 138 7 129 9.42e-13 66.6
Msa0479500 AT1G47760.1 33.333 126 72 3 1 121 1 119 9.65e-13 64.7
Msa0479500 AT1G69540.2 52.830 53 25 0 1 53 1 53 9.72e-13 67.0
Msa0479500 AT1G77080.8 46.575 73 38 1 1 73 1 72 1.05e-12 65.5
Msa0479500 AT2G24840.1 27.638 199 118 4 1 183 62 250 1.63e-12 65.5
Msa0479500 AT3G04100.1 41.667 60 35 0 2 61 14 73 3.49e-12 63.9
Msa0479500 AT1G29962.1 45.000 60 33 0 2 61 8 67 2.14e-11 61.2
Msa0479500 AT1G28460.1 45.000 60 33 0 2 61 8 67 3.40e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTGGATTCTCAAATTT+AGG 0.238867 3_3:-84505115 Msa0479500:CDS
TCAACTTTACCTTCTTCCTT+TGG 0.281706 3_3:+84505407 None:intergenic
GGCAAAGACCATACCATTAT+AGG 0.302269 3_3:-84509783 Msa0479500:five_prime_UTR
CAACTTTACCTTCTTCCTTT+GGG 0.311919 3_3:+84505408 None:intergenic
TGTTCTCTATTCTCTTGATC+TGG 0.318834 3_3:+84509566 None:intergenic
GAGAGATGCATTTCCTATAA+TGG 0.324383 3_3:+84509770 None:intergenic
TCATAGTATCATATTATTGT+TGG 0.373157 3_3:+84504944 None:intergenic
CACTGTTCTTTGTGATGCTA+AGG 0.392741 3_3:-84509479 Msa0479500:CDS
GCTCCTCCATTGTGAGGATT+AGG 0.402175 3_3:+84505055 None:intergenic
GAGGCTTCTTGAGGATGAAA+TGG 0.410025 3_3:-84508944 Msa0479500:CDS
AGAAACTGAAAGATGTCAAT+AGG 0.417053 3_3:-84509129 Msa0479500:CDS
GGAATCTTCGCAAGGAGATT+AGG 0.438224 3_3:-84509108 Msa0479500:intron
TTCATGAAGCTTGCCAGTGC+TGG 0.445387 3_3:+84509438 None:intergenic
AGATAGATAGATAGATAGCT+AGG 0.463869 3_3:-84509620 Msa0479500:five_prime_UTR
GGGGAGTACGAGTCTGTGAT+TGG 0.478663 3_3:-84505130 Msa0479500:CDS
CAACAGACTCCTGCGTGACT+TGG 0.486936 3_3:-84505293 Msa0479500:intron
CATAGTAAACAACAACAATC+AGG 0.488548 3_3:-84509656 Msa0479500:five_prime_UTR
AGATAGATAGATAGCTAGGT+AGG 0.490031 3_3:-84509616 Msa0479500:five_prime_UTR
ATTATCATGTTCTCCAGCAC+TGG 0.494724 3_3:-84509451 Msa0479500:CDS
GTAGTTTAATAATGAGAGAG+AGG 0.503057 3_3:-84505320 Msa0479500:intron
TACGTACTAGGCAGAGGATG+GGG 0.507362 3_3:-84508999 Msa0479500:intron
TGGAGGAGCATCAGCTGCCT+CGG 0.511038 3_3:-84505041 Msa0479500:CDS
CTAGGTAGGTTATCTAGCTA+TGG 0.524845 3_3:-84509602 Msa0479500:exon
TTGAAATGATGGACAATGGA+GGG 0.529931 3_3:-84505150 Msa0479500:CDS
TCTGTGGAACTCTCATTATG+AGG 0.531523 3_3:-84509254 Msa0479500:intron
ACAAAGAACAGTGAGCTCAT+TGG 0.534621 3_3:+84509489 None:intergenic
CCCTCTGTATAGATAAGTCT+TGG 0.535006 3_3:+84509708 None:intergenic
ATGCATTTCCTATAATGGTA+TGG 0.547155 3_3:+84509775 None:intergenic
GAAAGAAACATACGAGGCGG+AGG 0.547284 3_3:+84509405 None:intergenic
GATTGACACCCAAAGGAAGA+AGG 0.549485 3_3:-84505416 Msa0479500:intron
ACAGAGGGTAGGAACTAGAA+AGG 0.552507 3_3:-84509693 Msa0479500:five_prime_UTR
CTTGCGCTCACGAATAGCCT+TGG 0.554248 3_3:+84508912 None:intergenic
TGAAATGATGGACAATGGAG+GGG 0.558395 3_3:-84505149 Msa0479500:CDS
GATCAATATCAGATGACTGT+AGG 0.558840 3_3:-84509283 Msa0479500:CDS
TGAAATGGACAAGGCTGCCA+AGG 0.561225 3_3:-84508929 Msa0479500:CDS
ACTACGTACTAGGCAGAGGA+TGG 0.565678 3_3:-84509001 Msa0479500:intron
TTATTGTTGGAAAGTGATTG+TGG 0.567585 3_3:+84504957 None:intergenic
CTACGTACTAGGCAGAGGAT+GGG 0.571534 3_3:-84509000 Msa0479500:intron
TTGTGAGGATTAGGATGAGT+AGG 0.571730 3_3:+84505064 None:intergenic
CAAGGCTATTCGTGAGCGCA+AGG 0.573130 3_3:-84508911 Msa0479500:intron
ACTTACTCAAAACGAAGGAA+TGG 0.578899 3_3:-84509526 Msa0479500:CDS
GGAAGAGCTGAGGCTTCTTG+AGG 0.588608 3_3:-84508953 Msa0479500:CDS
CAAATCAGATTGACACCCAA+AGG 0.596522 3_3:-84505423 Msa0479500:CDS
TGGCGTGCAATCACAGACAA+TGG 0.598626 3_3:+84509728 None:intergenic
TTGTCCATCATTTCAAAACG+TGG 0.601318 3_3:+84505157 None:intergenic
GCTGATGCTCCTCCATTGTG+AGG 0.602305 3_3:+84505049 None:intergenic
AAAGAAACATACGAGGCGGA+GGG 0.606316 3_3:+84509406 None:intergenic
GCCAAGACTTATCTATACAG+AGG 0.611724 3_3:-84509709 Msa0479500:five_prime_UTR
ATCTGAGCATGGAAGAGCTG+AGG 0.615257 3_3:-84508963 Msa0479500:CDS
CCAAGACTTATCTATACAGA+GGG 0.622964 3_3:-84509708 Msa0479500:five_prime_UTR
TGTCAATAGGAATCTTCGCA+AGG 0.629338 3_3:-84509116 Msa0479500:CDS
ACGTACTAGGCAGAGGATGG+GGG 0.634592 3_3:-84508998 Msa0479500:intron
CATCCTAATCCTCACAATGG+AGG 0.635153 3_3:-84505058 Msa0479500:CDS
GACTTATCTATACAGAGGGT+AGG 0.637498 3_3:-84509704 Msa0479500:five_prime_UTR
AAGCTCAATGCAAACATGCG+TGG 0.640903 3_3:+84505091 None:intergenic
TCTTGAGGATGAAATGGACA+AGG 0.641493 3_3:-84508938 Msa0479500:CDS
ATGTCTGAATGATCTGAGCA+TGG 0.649883 3_3:-84508974 Msa0479500:CDS
GGTTATCTAGCTATGGCTCG+AGG 0.656910 3_3:-84509595 Msa0479500:exon
AGGGTAAGTGGTGAGATCCG+AGG 0.669094 3_3:+84505024 None:intergenic
TTTGAAATGATGGACAATGG+AGG 0.672358 3_3:-84505151 Msa0479500:CDS
AAGTAACTTACTCAAAACGA+AGG 0.681799 3_3:-84509531 Msa0479500:CDS
ACTCATCCTAATCCTCACAA+TGG 0.687965 3_3:-84505061 Msa0479500:CDS
AAGAAACATACGAGGCGGAG+GGG 0.689447 3_3:+84509407 None:intergenic
TGACTGTAGGAATTGATCTG+TGG 0.697006 3_3:-84509270 Msa0479500:CDS
TGATACATACCAAGTCACGC+AGG 0.717237 3_3:+84505284 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAAAAAAAAAAAT+AGG - chr3_3:84506639-84506658 Msa0479500:intron 0.0%
!! TGAAAAAAAATAAAAGAAAA+AGG + chr3_3:84505359-84505378 None:intergenic 10.0%
!! ATAAGTATTATAAATTTCTT+TGG - chr3_3:84505485-84505504 Msa0479500:intron 10.0%
!! ATATTTATATATAGGATTTA+GGG + chr3_3:84505531-84505550 None:intergenic 10.0%
!!! ACTATTTTCATAAAATATAT+TGG - chr3_3:84506328-84506347 Msa0479500:intron 10.0%
!!! TATAATTATATGATAATGTA+AGG + chr3_3:84507262-84507281 None:intergenic 10.0%
!!! CATAAATTTTAATATAGTAT+TGG + chr3_3:84507500-84507519 None:intergenic 10.0%
!! TTAAAATTTATGTTCAAAAT+CGG - chr3_3:84507508-84507527 Msa0479500:intron 10.0%
!!! CTATCAAAATATAATTTTAT+CGG + chr3_3:84508069-84508088 None:intergenic 10.0%
!!! AAAATTGATTGATTTAATTA+TGG - chr3_3:84509366-84509385 Msa0479500:intron 10.0%
!! AAATAAAAGAAAAAGGAAAA+GGG + chr3_3:84505352-84505371 None:intergenic 15.0%
!! AAAATAAAAGAAAAAGGAAA+AGG + chr3_3:84505353-84505372 None:intergenic 15.0%
!! CATATTTATATATAGGATTT+AGG + chr3_3:84505532-84505551 None:intergenic 15.0%
!! ACATATGCATATTTATATAT+AGG + chr3_3:84505539-84505558 None:intergenic 15.0%
!! TAAACAAAAATTCTTCAAAA+AGG + chr3_3:84506008-84506027 None:intergenic 15.0%
!!! ATCAATTTTTGTCATATTTA+AGG - chr3_3:84506972-84506991 Msa0479500:intron 15.0%
!!! TCAATTTTTGTCATATTTAA+GGG - chr3_3:84506973-84506992 Msa0479500:intron 15.0%
!! ATATACTACGATAAAAATAA+AGG + chr3_3:84507116-84507135 None:intergenic 15.0%
!!! TTAAAATTAGTCATCTTTTT+AGG + chr3_3:84507862-84507881 None:intergenic 15.0%
!! TTGGATATATATATAATGTT+AGG + chr3_3:84508137-84508156 None:intergenic 15.0%
!! TATATATCCAATAATTATCT+AGG - chr3_3:84508146-84508165 Msa0479500:intron 15.0%
!! GAAAAAAATATTATCATCAT+TGG + chr3_3:84508257-84508276 None:intergenic 15.0%
!!! TCATTTTATCTATAAATTAC+AGG - chr3_3:84508760-84508779 Msa0479500:intron 15.0%
!! ATTCTATATAAGTAAAAAAC+TGG + chr3_3:84508942-84508961 None:intergenic 15.0%
!! TCTGATTTATATTATTGTCT+TGG - chr3_3:84505235-84505254 Msa0479500:intron 20.0%
!!! TTATATGTGTGATGAAATTT+TGG + chr3_3:84505758-84505777 None:intergenic 20.0%
!! TTCATCACACATATAAATTA+AGG - chr3_3:84505762-84505781 Msa0479500:intron 20.0%
!! TAAATAAAACAGATTACGAA+AGG + chr3_3:84505913-84505932 None:intergenic 20.0%
!!! TTCGTAATCTGTTTTATTTA+CGG - chr3_3:84505913-84505932 Msa0479500:intron 20.0%
!!! TTTAGTACTTTTGTTGTAAT+GGG + chr3_3:84506126-84506145 None:intergenic 20.0%
!!! ATTTAGTACTTTTGTTGTAA+TGG + chr3_3:84506127-84506146 None:intergenic 20.0%
!! AATTATTCATATCATGACAA+AGG + chr3_3:84506246-84506265 None:intergenic 20.0%
!! TTCATAAAATATATTGGAGA+AGG - chr3_3:84506334-84506353 Msa0479500:intron 20.0%
!! TCATAAAATATATTGGAGAA+GGG - chr3_3:84506335-84506354 Msa0479500:intron 20.0%
!! TTTACACATGAGAAAATAAA+TGG - chr3_3:84506391-84506410 Msa0479500:intron 20.0%
!!! AAATTTTAAAATGACTTAGG+TGG + chr3_3:84506816-84506835 None:intergenic 20.0%
!!! ACCTAAGTCATTTTAAAATT+TGG - chr3_3:84506815-84506834 Msa0479500:intron 20.0%
!!! ACCAAATTTTAAAATGACTT+AGG + chr3_3:84506819-84506838 None:intergenic 20.0%
!! ATATAATTGAAGTATGTCAT+AGG + chr3_3:84506863-84506882 None:intergenic 20.0%
!!! CTAAATTTTGATATCATGAA+TGG - chr3_3:84507072-84507091 Msa0479500:intron 20.0%
!! TCATAAAAAAATAGTGAAGT+AGG - chr3_3:84507177-84507196 Msa0479500:intron 20.0%
!! CATAAAAAAATAGTGAAGTA+GGG - chr3_3:84507178-84507197 Msa0479500:intron 20.0%
!! ATTGCATTTACTTGTAAAAT+CGG - chr3_3:84507531-84507550 Msa0479500:intron 20.0%
!!! TTTCAAACAAGTCATTTTAA+AGG - chr3_3:84507784-84507803 Msa0479500:intron 20.0%
!!! AAAAGATGACTAATTTTAAG+TGG - chr3_3:84507863-84507882 Msa0479500:intron 20.0%
!! GAAACGATTTAAAAACTAAA+AGG - chr3_3:84507966-84507985 Msa0479500:intron 20.0%
!!! CACCAAATAATTTTTTTGAA+CGG + chr3_3:84508172-84508191 None:intergenic 20.0%
!!! GATGATAATATTTTTTTCTG+AGG - chr3_3:84508259-84508278 Msa0479500:intron 20.0%
!!! CAATGTTTTAAATTGAGAAA+GGG - chr3_3:84508640-84508659 Msa0479500:intron 20.0%
!! AAAAAAGAACCAAAGTTATT+AGG + chr3_3:84508734-84508753 None:intergenic 20.0%
!! TTATGCTAACTGAAAATTAA+TGG + chr3_3:84508842-84508861 None:intergenic 20.0%
!! AATTGTATAACAAACTAACA+AGG + chr3_3:84509049-84509068 None:intergenic 20.0%
!!! TTAACTTATTTCTTGTTCAT+AGG - chr3_3:84509183-84509202 Msa0479500:intron 20.0%
!! ACTTAGATAGAATTACATAT+AGG - chr3_3:84509318-84509337 Msa0479500:intron 20.0%
!!! TTGATTGATTTAATTATGGA+AGG - chr3_3:84509370-84509389 Msa0479500:intron 20.0%
!! TCATAGTATCATATTATTGT+TGG + chr3_3:84509626-84509645 None:intergenic 20.0%
! TTATATATAGGATTTAGGGA+AGG + chr3_3:84505527-84505546 None:intergenic 25.0%
! ATGTTTAAATTACACATGAG+AGG - chr3_3:84506494-84506513 Msa0479500:intron 25.0%
! TATGTACATGTCATTACATA+TGG - chr3_3:84506561-84506580 Msa0479500:intron 25.0%
! ATGTACATGTCATTACATAT+GGG - chr3_3:84506562-84506581 Msa0479500:intron 25.0%
!!! CATTTTAGAAACTCATTAAG+AGG - chr3_3:84506673-84506692 Msa0479500:intron 25.0%
! TATCATAGCCAAAATCTATT+GGG + chr3_3:84507402-84507421 None:intergenic 25.0%
! ATTTACTTGTAAAATCGGTT+TGG - chr3_3:84507536-84507555 Msa0479500:intron 25.0%
! TGGTGCAGAATAAAAATATT+TGG - chr3_3:84507556-84507575 Msa0479500:intron 25.0%
! ATTAGATCAAATGCATCTAA+AGG - chr3_3:84507649-84507668 Msa0479500:intron 25.0%
!!! TTGAGACTTTTGAAACTTAA+AGG + chr3_3:84507995-84508014 None:intergenic 25.0%
!!! GGACTTTTGAAACTTATTAA+AGG + chr3_3:84507736-84507755 None:intergenic 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG + chr3_3:84507977-84507996 None:intergenic 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG + chr3_3:84507976-84507995 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr3_3:84507768-84507787 None:intergenic 25.0%
!!! ATCTTTTTAGGTATGACAAA+TGG + chr3_3:84507850-84507869 None:intergenic 25.0%
!!! ACTAATTTTAAGTGGATGTT+AGG - chr3_3:84507871-84507890 Msa0479500:intron 25.0%
!!! TTGAGACTTTTGAAACTTAA+AGG - chr3_3:84507995-84508014 Msa0479500:intron 25.0%
!!! GCAATGTTTTAAATTGAGAA+AGG - chr3_3:84508639-84508658 Msa0479500:intron 25.0%
!! GAAATTCAATAGTTTGCAAT+TGG + chr3_3:84508694-84508713 None:intergenic 25.0%
! AATTTCTATTAACTCTGTAC+TGG - chr3_3:84508708-84508727 Msa0479500:intron 25.0%
!!! GAGAAAACAATTTGATTTTG+TGG + chr3_3:84508820-84508839 None:intergenic 25.0%
! TATAAGTAAAAAACTGGAGA+AGG + chr3_3:84508936-84508955 None:intergenic 25.0%
! TTTGTGTAGAATTTACACTT+GGG + chr3_3:84509019-84509038 None:intergenic 25.0%
! GAAGTGACTAAAAAAGTAAA+GGG + chr3_3:84509565-84509584 None:intergenic 25.0%
! AGAAGTGACTAAAAAAGTAA+AGG + chr3_3:84509566-84509585 None:intergenic 25.0%
ATGCATTTCCTATAATGGTA+TGG + chr3_3:84504795-84504814 None:intergenic 30.0%
CATAGTAAACAACAACAATC+AGG - chr3_3:84504911-84504930 Msa0479500:three_prime_UTR 30.0%
AGATAGATAGATAGATAGCT+AGG - chr3_3:84504947-84504966 Msa0479500:three_prime_UTR 30.0%
AAGTAACTTACTCAAAACGA+AGG - chr3_3:84505036-84505055 Msa0479500:CDS 30.0%
ATAAATAGAGAAGCTAGCTA+GGG + chr3_3:84505193-84505212 None:intergenic 30.0%
AGAAAAAGGAAAAGGGAAAA+TGG + chr3_3:84505345-84505364 None:intergenic 30.0%
AAGTTCTCTTGCATATTCTA+TGG + chr3_3:84505416-84505435 None:intergenic 30.0%
AGAAACTGAAAGATGTCAAT+AGG - chr3_3:84505438-84505457 Msa0479500:CDS 30.0%
TCAACTAAATTCTATGTCTC+TGG + chr3_3:84505816-84505835 None:intergenic 30.0%
ATAATTCCAAATTAGCTGCA+AGG + chr3_3:84505960-84505979 None:intergenic 30.0%
TAAAATGCATTAATGAGTCC+TGG - chr3_3:84506083-84506102 Msa0479500:intron 30.0%
! GTTTAGAGTATAATATCACC+AGG + chr3_3:84506104-84506123 None:intergenic 30.0%
TTCAACTCAATAATCGAACT+CGG + chr3_3:84506203-84506222 None:intergenic 30.0%
ATGTGTAAATTACACATGAG+AGG + chr3_3:84506380-84506399 None:intergenic 30.0%
! TATTTTCATCAGCTCACAAA+TGG + chr3_3:84506527-84506546 None:intergenic 30.0%
AAACTAAGATAAGCTCATGT+TGG + chr3_3:84506607-84506626 None:intergenic 30.0%
TACACATAAGTAGACAAGTT+AGG - chr3_3:84506768-84506787 Msa0479500:intron 30.0%
ACACATAAGTAGACAAGTTA+GGG - chr3_3:84506769-84506788 Msa0479500:intron 30.0%
ATAAAAGCTGCATTGTAAAG+TGG + chr3_3:84507157-84507176 None:intergenic 30.0%
!! AGTGAAGTAGGGTTTTATAA+AGG - chr3_3:84507189-84507208 Msa0479500:intron 30.0%
!!! CATATGCTATTTTTTAAGCC+CGG + chr3_3:84507216-84507235 None:intergenic 30.0%
! AACATTTGAAGTGTGACTAT+TGG - chr3_3:84507347-84507366 Msa0479500:intron 30.0%
GTATCATAGCCAAAATCTAT+TGG + chr3_3:84507403-84507422 None:intergenic 30.0%
!! CTTACAAAGTTGACTTGTAA+AGG - chr3_3:84507449-84507468 Msa0479500:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + chr3_3:84508026-84508045 None:intergenic 30.0%
GAAACTTAAAGGATCACTTT+GGG + chr3_3:84507696-84507715 None:intergenic 30.0%
TGAAACTTAAAGGATCACTT+TGG + chr3_3:84507697-84507716 None:intergenic 30.0%
!!! TTTTTAGGTATGACAAATGG+TGG + chr3_3:84507847-84507866 None:intergenic 30.0%
CATATTGTAGATAGCATAGT+TGG + chr3_3:84507938-84507957 None:intergenic 30.0%
GGCCGTTCAAAAAAATTATT+TGG - chr3_3:84508167-84508186 Msa0479500:intron 30.0%
!! TTTTCTGAGGATTACTCAAT+TGG - chr3_3:84508272-84508291 Msa0479500:intron 30.0%
!!! AACTAACTTCGATGCTTTTT+TGG - chr3_3:84508429-84508448 Msa0479500:intron 30.0%
ATGAAATCACAACTTACAAC+AGG + chr3_3:84508586-84508605 None:intergenic 30.0%
GTTTGTGTAGAATTTACACT+TGG + chr3_3:84509020-84509039 None:intergenic 30.0%
TAACGAGTTTCTTATGACAA+TGG - chr3_3:84509101-84509120 Msa0479500:intron 30.0%
!! TGACAATGGATTACAGTATA+AGG - chr3_3:84509115-84509134 Msa0479500:CDS 30.0%
GTAGTTTAATAATGAGAGAG+AGG - chr3_3:84509247-84509266 Msa0479500:intron 30.0%
GTGATTGGATTCTCAAATTT+AGG - chr3_3:84509452-84509471 Msa0479500:CDS 30.0%
CTAAAAAAGTAAAGGGTAAG+TGG + chr3_3:84509558-84509577 None:intergenic 30.0%
TTATTGTTGGAAAGTGATTG+TGG + chr3_3:84509613-84509632 None:intergenic 30.0%
GAGAGATGCATTTCCTATAA+TGG + chr3_3:84504800-84504819 None:intergenic 35.0%
CCAAGACTTATCTATACAGA+GGG - chr3_3:84504859-84504878 Msa0479500:three_prime_UTR 35.0%
AGATAGATAGATAGCTAGGT+AGG - chr3_3:84504951-84504970 Msa0479500:three_prime_UTR 35.0%
TGTTCTCTATTCTCTTGATC+TGG + chr3_3:84505004-84505023 None:intergenic 35.0%
ACTTACTCAAAACGAAGGAA+TGG - chr3_3:84505041-84505060 Msa0479500:CDS 35.0%
!! AAGGAATGGTCTTTTCAAGA+AGG - chr3_3:84505055-84505074 Msa0479500:CDS 35.0%
GTTAGAGAAAGAAACATACG+AGG + chr3_3:84505171-84505190 None:intergenic 35.0%
GATAAATAGAGAAGCTAGCT+AGG + chr3_3:84505194-84505213 None:intergenic 35.0%
GATCAATATCAGATGACTGT+AGG - chr3_3:84505284-84505303 Msa0479500:intron 35.0%
!! GTCGTACAAAATGGACTTTT+AGG - chr3_3:84505868-84505887 Msa0479500:intron 35.0%
TAAGATAAGCTCATGTTGGT+TGG + chr3_3:84506603-84506622 None:intergenic 35.0%
GGTCAATTGAATTAGACTTG+TGG - chr3_3:84506836-84506855 Msa0479500:intron 35.0%
!! AGTAGGGTTTTATAAAGGTC+CGG - chr3_3:84507194-84507213 Msa0479500:intron 35.0%
GACAAGTAATGTGTTAGACT+CGG - chr3_3:84507235-84507254 Msa0479500:intron 35.0%
ATGTTCAATCTTAGACGTGA+GGG + chr3_3:84507332-84507351 None:intergenic 35.0%
AATGTTCAATCTTAGACGTG+AGG + chr3_3:84507333-84507352 None:intergenic 35.0%
! TTCTTTCACACTTTTGTGTG+TGG + chr3_3:84507617-84507636 None:intergenic 35.0%
TGAAACTTAAAGGACCACTT+TGG - chr3_3:84508005-84508024 Msa0479500:intron 35.0%
GAAACTTAAAGGACCACTTT+GGG - chr3_3:84508006-84508025 Msa0479500:intron 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG + chr3_3:84507680-84507699 None:intergenic 35.0%
TATCGGTCAAATGCATCTAA+AGG + chr3_3:84508052-84508071 None:intergenic 35.0%
TGAACGGCCTAGATAATTAT+TGG + chr3_3:84508156-84508175 None:intergenic 35.0%
! GTGAAAAGTATGCCAACATT+CGG - chr3_3:84508189-84508208 Msa0479500:intron 35.0%
TACCGAGTCACAATTTCAAT+AGG - chr3_3:84508314-84508333 Msa0479500:intron 35.0%
TGCCTATTGAAATTGTGACT+CGG + chr3_3:84508319-84508338 None:intergenic 35.0%
! TTTTGTCCAGATATTGTGAG+TGG - chr3_3:84508339-84508358 Msa0479500:intron 35.0%
AGATATTGTGAGTGGTTGAT+GGG - chr3_3:84508347-84508366 Msa0479500:intron 35.0%
ATTGCATGATGCCTTGAATT+TGG + chr3_3:84508397-84508416 None:intergenic 35.0%
! AATTCAAGGCATCATGCAAT+TGG - chr3_3:84508397-84508416 Msa0479500:intron 35.0%
!! AAAAGCATCGAAGTTAGTTG+TGG + chr3_3:84508428-84508447 None:intergenic 35.0%
TCATGTTACTATCATGGACA+TGG + chr3_3:84508517-84508536 None:intergenic 35.0%
TCCATGATAGTAACATGAGA+TGG - chr3_3:84508519-84508538 Msa0479500:intron 35.0%
CCATGATAGTAACATGAGAT+GGG - chr3_3:84508520-84508539 Msa0479500:intron 35.0%
ATCACAACTTACAACAGGAT+TGG + chr3_3:84508581-84508600 None:intergenic 35.0%
! TTTGCAATTGGTTCTTGTAG+TGG + chr3_3:84508682-84508701 None:intergenic 35.0%
AGGTGTTCAGTTCAAATTGT+TGG - chr3_3:84508780-84508799 Msa0479500:intron 35.0%
ACTAGCAAGCAATTTAGCAT+CGG + chr3_3:84508873-84508892 None:intergenic 35.0%
TACACTTGGGACAAATTGAT+TGG + chr3_3:84509006-84509025 None:intergenic 35.0%
TAACAAACTAACAAGGTGAG+AGG + chr3_3:84509042-84509061 None:intergenic 35.0%
TCATAAGAAACTCGTTAGCA+TGG + chr3_3:84509098-84509117 None:intergenic 35.0%
CAACTTTACCTTCTTCCTTT+GGG + chr3_3:84509162-84509181 None:intergenic 35.0%
TCAACTTTACCTTCTTCCTT+TGG + chr3_3:84509163-84509182 None:intergenic 35.0%
!!! AGATCCACGTTTTGAAATGA+TGG - chr3_3:84509406-84509425 Msa0479500:intron 35.0%
TTGTCCATCATTTCAAAACG+TGG + chr3_3:84509413-84509432 None:intergenic 35.0%
!!! CGTTTTGAAATGATGGACAA+TGG - chr3_3:84509413-84509432 Msa0479500:intron 35.0%
!! TTTGAAATGATGGACAATGG+AGG - chr3_3:84509416-84509435 Msa0479500:intron 35.0%
!! TTGAAATGATGGACAATGGA+GGG - chr3_3:84509417-84509436 Msa0479500:intron 35.0%
GGCAAAGACCATACCATTAT+AGG - chr3_3:84504784-84504803 Msa0479500:three_prime_UTR 40.0%
GCCAAGACTTATCTATACAG+AGG - chr3_3:84504858-84504877 Msa0479500:three_prime_UTR 40.0%
CCCTCTGTATAGATAAGTCT+TGG + chr3_3:84504862-84504881 None:intergenic 40.0%
GACTTATCTATACAGAGGGT+AGG - chr3_3:84504863-84504882 Msa0479500:three_prime_UTR 40.0%
CTAGGTAGGTTATCTAGCTA+TGG - chr3_3:84504965-84504984 Msa0479500:three_prime_UTR 40.0%
ACAAAGAACAGTGAGCTCAT+TGG + chr3_3:84505081-84505100 None:intergenic 40.0%
CACTGTTCTTTGTGATGCTA+AGG - chr3_3:84505088-84505107 Msa0479500:CDS 40.0%
ATTATCATGTTCTCCAGCAC+TGG - chr3_3:84505116-84505135 Msa0479500:CDS 40.0%
AGAGAAAGAAACATACGAGG+CGG + chr3_3:84505168-84505187 None:intergenic 40.0%
TGACTGTAGGAATTGATCTG+TGG - chr3_3:84505297-84505316 Msa0479500:CDS 40.0%
TCTGTGGAACTCTCATTATG+AGG - chr3_3:84505313-84505332 Msa0479500:CDS 40.0%
TGTCAATAGGAATCTTCGCA+AGG - chr3_3:84505451-84505470 Msa0479500:intron 40.0%
TGTGTGTTGTACTACGTACT+AGG - chr3_3:84505556-84505575 Msa0479500:intron 40.0%
ATGTCTGAATGATCTGAGCA+TGG - chr3_3:84505593-84505612 Msa0479500:intron 40.0%
TCTTGAGGATGAAATGGACA+AGG - chr3_3:84505629-84505648 Msa0479500:intron 40.0%
ATTCTGCCTTGCAGCTAATT+TGG - chr3_3:84505951-84505970 Msa0479500:intron 40.0%
!! GTAGGGTTTTATAAAGGTCC+GGG - chr3_3:84507195-84507214 Msa0479500:intron 40.0%
AGTGTGACTATTGGCATGAT+AGG - chr3_3:84507356-84507375 Msa0479500:intron 40.0%
GTGTGACTATTGGCATGATA+GGG - chr3_3:84507357-84507376 Msa0479500:intron 40.0%
TGTGACTATTGGCATGATAG+GGG - chr3_3:84507358-84507377 Msa0479500:intron 40.0%
! GCAAGTGACCCAATAGATTT+TGG - chr3_3:84507391-84507410 Msa0479500:intron 40.0%
!! AGTTGACTTGTAAAGGTCGA+TGG - chr3_3:84507456-84507475 Msa0479500:intron 40.0%
TGGATGTTAGGAGCAAGATT+TGG - chr3_3:84507883-84507902 Msa0479500:intron 40.0%
TGGTACCAAAGATGAGTTCA+AGG - chr3_3:84507903-84507922 Msa0479500:intron 40.0%
TGCTTCCTTGAACTCATCTT+TGG + chr3_3:84507911-84507930 None:intergenic 40.0%
CCAACATTCGGCTCAAAATT+GGG - chr3_3:84508201-84508220 Msa0479500:intron 40.0%
TGGCAAATGAATGCAACAGA+GGG + chr3_3:84508237-84508256 None:intergenic 40.0%
TTGGCAAATGAATGCAACAG+AGG + chr3_3:84508238-84508257 None:intergenic 40.0%
CATCAACCACTCACAATATC+TGG + chr3_3:84508348-84508367 None:intergenic 40.0%
CAGATATTGTGAGTGGTTGA+TGG - chr3_3:84508346-84508365 Msa0479500:intron 40.0%
! GATATTGTGAGTGGTTGATG+GGG - chr3_3:84508348-84508367 Msa0479500:intron 40.0%
CACCTTGATTGCCAAATTCA+AGG - chr3_3:84508383-84508402 Msa0479500:intron 40.0%
TGCCTTGAATTTGGCAATCA+AGG + chr3_3:84508388-84508407 None:intergenic 40.0%
CCCATCTCATGTTACTATCA+TGG + chr3_3:84508523-84508542 None:intergenic 40.0%
ATAGTAACATGAGATGGGCA+TGG - chr3_3:84508525-84508544 Msa0479500:intron 40.0%
ACAACTTACAACAGGATTGG+CGG + chr3_3:84508578-84508597 None:intergenic 40.0%
! CTGTACTGGCCTAATAACTT+TGG - chr3_3:84508722-84508741 Msa0479500:intron 40.0%
!!! AGTACCAATTTTTCGAGCAG+CGG - chr3_3:84508890-84508909 Msa0479500:intron 40.0%
CAAATCAGATTGACACCCAA+AGG - chr3_3:84509144-84509163 Msa0479500:CDS 40.0%
!! TGAAATGATGGACAATGGAG+GGG - chr3_3:84509418-84509437 Msa0479500:CDS 40.0%
TTGTGAGGATTAGGATGAGT+AGG + chr3_3:84509506-84509525 None:intergenic 40.0%
ACTCATCCTAATCCTCACAA+TGG - chr3_3:84509506-84509525 Msa0479500:CDS 40.0%
ACAGAGGGTAGGAACTAGAA+AGG - chr3_3:84504874-84504893 Msa0479500:three_prime_UTR 45.0%
AAAGAAACATACGAGGCGGA+GGG + chr3_3:84505164-84505183 None:intergenic 45.0%
GGAATCTTCGCAAGGAGATT+AGG - chr3_3:84505459-84505478 Msa0479500:intron 45.0%
TTGTACTACGTACTAGGCAG+AGG - chr3_3:84505562-84505581 Msa0479500:intron 45.0%
GAGGCTTCTTGAGGATGAAA+TGG - chr3_3:84505623-84505642 Msa0479500:intron 45.0%
TATTGGAGAAGGGAATCGAG+AGG - chr3_3:84506345-84506364 Msa0479500:intron 45.0%
ATTGGAGAAGGGAATCGAGA+GGG - chr3_3:84506346-84506365 Msa0479500:intron 45.0%
! AATCTTAGACGTGAGGGTGT+GGG + chr3_3:84507326-84507345 None:intergenic 45.0%
GCCAACATTCGGCTCAAAAT+TGG - chr3_3:84508200-84508219 Msa0479500:intron 45.0%
! CCCAATTTTGAGCCGAATGT+TGG + chr3_3:84508204-84508223 None:intergenic 45.0%
TGAATGCAACAGAGGGAACT+TGG + chr3_3:84508230-84508249 None:intergenic 45.0%
!! GCATGGGGAGTACCAAAATT+GGG - chr3_3:84508547-84508566 Msa0479500:intron 45.0%
!! CATGGGGAGTACCAAAATTG+GGG - chr3_3:84508548-84508567 Msa0479500:intron 45.0%
!! ATGGGGAGTACCAAAATTGG+GGG - chr3_3:84508549-84508568 Msa0479500:intron 45.0%
! CAACTTACAACAGGATTGGC+GGG + chr3_3:84508577-84508596 None:intergenic 45.0%
TTTGCCGCTGCTCGAAAAAT+TGG + chr3_3:84508897-84508916 None:intergenic 45.0%
GGAGAAGGAGACACATATAG+AGG + chr3_3:84508921-84508940 None:intergenic 45.0%
GATTGACACCCAAAGGAAGA+AGG - chr3_3:84509151-84509170 Msa0479500:CDS 45.0%
AAGCTCAATGCAAACATGCG+TGG + chr3_3:84509479-84509498 None:intergenic 45.0%
CATCCTAATCCTCACAATGG+AGG - chr3_3:84509509-84509528 Msa0479500:CDS 45.0%
!! ATATTAAAAGTTATATTTAT+TGG - chr3_3:84505378-84505397 Msa0479500:intron 5.0%
TGGCGTGCAATCACAGACAA+TGG + chr3_3:84504842-84504861 None:intergenic 50.0%
GGTTATCTAGCTATGGCTCG+AGG - chr3_3:84504972-84504991 Msa0479500:three_prime_UTR 50.0%
TTCATGAAGCTTGCCAGTGC+TGG + chr3_3:84505132-84505151 None:intergenic 50.0%
AAGAAACATACGAGGCGGAG+GGG + chr3_3:84505163-84505182 None:intergenic 50.0%
GAAAGAAACATACGAGGCGG+AGG + chr3_3:84505165-84505184 None:intergenic 50.0%
ACTACGTACTAGGCAGAGGA+TGG - chr3_3:84505566-84505585 Msa0479500:intron 50.0%
CTACGTACTAGGCAGAGGAT+GGG - chr3_3:84505567-84505586 Msa0479500:intron 50.0%
TACGTACTAGGCAGAGGATG+GGG - chr3_3:84505568-84505587 Msa0479500:intron 50.0%
ATCTGAGCATGGAAGAGCTG+AGG - chr3_3:84505604-84505623 Msa0479500:intron 50.0%
TGAAATGGACAAGGCTGCCA+AGG - chr3_3:84505638-84505657 Msa0479500:intron 50.0%
TCGCAGCGTGTCGTACAAAA+TGG - chr3_3:84505859-84505878 Msa0479500:intron 50.0%
CTTCACCAACAGCGAATCGT+CGG - chr3_3:84506171-84506190 Msa0479500:intron 50.0%
TTCACCAACAGCGAATCGTC+GGG - chr3_3:84506172-84506191 Msa0479500:intron 50.0%
TTGGAGAAGGGAATCGAGAG+GGG - chr3_3:84506347-84506366 Msa0479500:intron 50.0%
CTTAGGTGGACGTCGTGATT+GGG + chr3_3:84506802-84506821 None:intergenic 50.0%
ACTTAGGTGGACGTCGTGAT+TGG + chr3_3:84506803-84506822 None:intergenic 50.0%
CAATCTTAGACGTGAGGGTG+TGG + chr3_3:84507327-84507346 None:intergenic 50.0%
AACATGAGATGGGCATGGCA+TGG - chr3_3:84508530-84508549 Msa0479500:intron 50.0%
ACATGAGATGGGCATGGCAT+GGG - chr3_3:84508531-84508550 Msa0479500:intron 50.0%
!! GGCATGGGGAGTACCAAAAT+TGG - chr3_3:84508546-84508565 Msa0479500:intron 50.0%
AGAAAGGGACCACACAGTAC+TGG - chr3_3:84508655-84508674 Msa0479500:intron 50.0%
!! TGTAGTGGACCAGTACTGTG+TGG + chr3_3:84508667-84508686 None:intergenic 50.0%
GCTCCTCCATTGTGAGGATT+AGG + chr3_3:84509515-84509534 None:intergenic 50.0%
ACGTACTAGGCAGAGGATGG+GGG - chr3_3:84505569-84505588 Msa0479500:intron 55.0%
GGAAGAGCTGAGGCTTCTTG+AGG - chr3_3:84505614-84505633 Msa0479500:intron 55.0%
CTTGCGCTCACGAATAGCCT+TGG + chr3_3:84505658-84505677 None:intergenic 55.0%
CAAGGCTATTCGTGAGCGCA+AGG - chr3_3:84505656-84505675 Msa0479500:intron 55.0%
TTCTCCCGACGATTCGCTGT+TGG + chr3_3:84506179-84506198 None:intergenic 55.0%
GAAGGGAATCGAGAGGGGAA+TGG - chr3_3:84506352-84506371 Msa0479500:intron 55.0%
! TTAGACGTGAGGGTGTGGGT+GGG + chr3_3:84507322-84507341 None:intergenic 55.0%
CATGAGATGGGCATGGCATG+GGG - chr3_3:84508532-84508551 Msa0479500:intron 55.0%
! GGGGAGTACGAGTCTGTGAT+TGG - chr3_3:84509437-84509456 Msa0479500:CDS 55.0%
GCTGATGCTCCTCCATTGTG+AGG + chr3_3:84509521-84509540 None:intergenic 55.0%
AGGGTAAGTGGTGAGATCCG+AGG + chr3_3:84509546-84509565 None:intergenic 55.0%
! GTGAGGGTGTGGGTGGGAAT+GGG + chr3_3:84507316-84507335 None:intergenic 60.0%
! CTTAGACGTGAGGGTGTGGG+TGG + chr3_3:84507323-84507342 None:intergenic 60.0%
! TTGGCGGGAGCCCCCAATTT+TGG + chr3_3:84508562-84508581 None:intergenic 60.0%
!! TGGAGGAGCATCAGCTGCCT+CGG - chr3_3:84509526-84509545 Msa0479500:CDS 60.0%
! CGTGAGGGTGTGGGTGGGAA+TGG + chr3_3:84507317-84507336 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84504784 84509805 84504784 ID=Msa0479500;Name=Msa0479500
chr3_3 mRNA 84504784 84509805 84504784 ID=Msa0479500-mRNA-1;Parent=Msa0479500;Name=Msa0479500-mRNA-1;_AED=0.18;_eAED=0.18;_QI=200|1|1|1|1|1|7|228|229
chr3_3 exon 84504784 84505197 84504784 ID=Msa0479500-mRNA-1:exon:24043;Parent=Msa0479500-mRNA-1
chr3_3 exon 84505294 84505338 84505294 ID=Msa0479500-mRNA-1:exon:24042;Parent=Msa0479500-mRNA-1
chr3_3 exon 84505417 84505458 84505417 ID=Msa0479500-mRNA-1:exon:24041;Parent=Msa0479500-mRNA-1
chr3_3 exon 84508912 84509011 84508912 ID=Msa0479500-mRNA-1:exon:24040;Parent=Msa0479500-mRNA-1
chr3_3 exon 84509109 84509170 84509109 ID=Msa0479500-mRNA-1:exon:24039;Parent=Msa0479500-mRNA-1
chr3_3 exon 84509255 84509321 84509255 ID=Msa0479500-mRNA-1:exon:24038;Parent=Msa0479500-mRNA-1
chr3_3 exon 84509418 84509805 84509418 ID=Msa0479500-mRNA-1:exon:24037;Parent=Msa0479500-mRNA-1
chr3_3 five_prime_UTR 84509606 84509805 84509606 ID=Msa0479500-mRNA-1:five_prime_utr;Parent=Msa0479500-mRNA-1
chr3_3 CDS 84509418 84509605 84509418 ID=Msa0479500-mRNA-1:cds;Parent=Msa0479500-mRNA-1
chr3_3 CDS 84509255 84509321 84509255 ID=Msa0479500-mRNA-1:cds;Parent=Msa0479500-mRNA-1
chr3_3 CDS 84509109 84509170 84509109 ID=Msa0479500-mRNA-1:cds;Parent=Msa0479500-mRNA-1
chr3_3 CDS 84508912 84509011 84508912 ID=Msa0479500-mRNA-1:cds;Parent=Msa0479500-mRNA-1
chr3_3 CDS 84505417 84505458 84505417 ID=Msa0479500-mRNA-1:cds;Parent=Msa0479500-mRNA-1
chr3_3 CDS 84505294 84505338 84505294 ID=Msa0479500-mRNA-1:cds;Parent=Msa0479500-mRNA-1
chr3_3 CDS 84505012 84505197 84505012 ID=Msa0479500-mRNA-1:cds;Parent=Msa0479500-mRNA-1
chr3_3 three_prime_UTR 84504784 84505011 84504784 ID=Msa0479500-mRNA-1:three_prime_utr;Parent=Msa0479500-mRNA-1
Gene Sequence

>Msa0479500

ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACGAACAGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCCAATGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATCATGTTCTCCAGCACTGGCAAGCTTCATGAATACATTAGCCCCTCCGCCTCAACAAAGCAGTTTTTCGATCAATATCAGATGACTGTAGGAATTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGAATGTCTGAATGATCTGAGCATGGAAGAGCTGAGGCTTCTTGAGGATGAAATGGACAAGGCTGCCAAGGCTATTCGTGAGCGCAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGAAATGATGGACAATGGAGGGGAGTACGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTACAGCCTACTCATCCTAATCCTCACAATGGAGGAGCATCAGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG
Protein sequence

>Msa0479500

MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF*