Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385210 | XP_024633944.2 | 96.739 | 368 | 10 | 1 | 1 | 366 | 1 | 368 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385210 | sp|Q9FV70|E2FC_ARATH | 51.505 | 299 | 113 | 8 | 70 | 366 | 123 | 391 | 1.11e-88 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385210 | A0A396J346 | 96.739 | 368 | 10 | 1 | 1 | 366 | 1 | 368 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0385210 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385210 | Msa0435540 | 0.918175 | 2.154005e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385210 | MtrunA17_Chr3g0142581 | 96.739 | 368 | 10 | 1 | 1 | 366 | 1 | 368 | 0.0 | 735 |
| Msa0385210 | MtrunA17_Chr1g0177351 | 46.970 | 330 | 157 | 6 | 53 | 366 | 92 | 419 | 7.70e-86 | 267 |
| Msa0385210 | MtrunA17_Chr4g0025881 | 45.397 | 315 | 155 | 4 | 69 | 366 | 100 | 414 | 1.31e-84 | 264 |
| Msa0385210 | MtrunA17_Chr4g0059551 | 46.377 | 69 | 37 | 0 | 97 | 165 | 14 | 82 | 9.69e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385210 | AT1G47870.2 | 51.505 | 299 | 113 | 8 | 70 | 366 | 122 | 390 | 1.06e-89 | 275 |
| Msa0385210 | AT1G47870.1 | 51.505 | 299 | 113 | 8 | 70 | 366 | 123 | 391 | 1.13e-89 | 275 |
| Msa0385210 | AT5G22220.3 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 8.63e-80 | 252 |
| Msa0385210 | AT5G22220.2 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 9.25e-80 | 252 |
| Msa0385210 | AT2G36010.1 | 41.716 | 338 | 175 | 6 | 50 | 366 | 112 | 448 | 2.01e-74 | 239 |
| Msa0385210 | AT2G36010.3 | 41.593 | 339 | 176 | 6 | 50 | 366 | 112 | 450 | 4.42e-73 | 235 |
| Msa0385210 | AT2G36010.2 | 38.507 | 335 | 171 | 8 | 50 | 366 | 162 | 479 | 7.75e-60 | 201 |
| Msa0385210 | AT5G14960.1 | 40.964 | 83 | 48 | 1 | 92 | 174 | 5 | 86 | 1.83e-12 | 68.2 |
| Msa0385210 | AT3G48160.1 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 3.70e-12 | 67.4 |
| Msa0385210 | AT3G48160.2 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 4.00e-12 | 67.4 |
| Msa0385210 | AT3G01330.1 | 37.500 | 88 | 54 | 1 | 89 | 176 | 10 | 96 | 8.93e-11 | 63.2 |
Find 115 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTGATAAATTTCT+TGG | 0.195269 | 3_1:+88717691 | None:intergenic |
| TACCATTATGCTTTCCTCTT+TGG | 0.206217 | 3_1:+88718010 | None:intergenic |
| ACAAATTACTCCTACGGATT+TGG | 0.244715 | 3_1:-88715430 | Msa0385210:CDS |
| TCGCTTGACTCAGAGGCTTT+TGG | 0.259553 | 3_1:-88715459 | Msa0385210:CDS |
| TAAAACTGCTGAGATCTTAA+AGG | 0.260105 | 3_1:-88717636 | Msa0385210:intron |
| ATATTTACTTCCACCGTATA+TGG | 0.272766 | 3_1:+88717392 | None:intergenic |
| TGCAGGTTGATGGTGATTAT+TGG | 0.273035 | 3_1:-88715307 | Msa0385210:intron |
| CATTATATGAACTCTATTCT+TGG | 0.291893 | 3_1:-88715217 | Msa0385210:three_prime_UTR |
| TCTTACCCTTCCATGCTTCC+AGG | 0.295518 | 3_1:-88716075 | Msa0385210:intron |
| AACATAGAAGAAGAAGTAAA+AGG | 0.295787 | 3_1:+88718810 | None:intergenic |
| TCTTCTTCTTCTGTTAGCTT+TGG | 0.304931 | 3_1:-88719138 | Msa0385210:five_prime_UTR |
| CACTCAAATGAGCAGGAATT+AGG | 0.313374 | 3_1:-88715841 | Msa0385210:intron |
| TAAAAGGAGTGAAATTGAAT+TGG | 0.316779 | 3_1:+88718826 | None:intergenic |
| ACAAATGTTCTTGAAGGAAT+AGG | 0.317166 | 3_1:-88717439 | Msa0385210:CDS |
| ATCTTCTAACTTTGCCTGCT+TGG | 0.327328 | 3_1:+88715572 | None:intergenic |
| ACAAACTTGACCAGTGTATA+AGG | 0.337642 | 3_1:-88716342 | Msa0385210:intron |
| ACCTCAATGAAACTAGCTTT+TGG | 0.340106 | 3_1:+88715942 | None:intergenic |
| TATAAACCAGGCCTTCAAAT+TGG | 0.347684 | 3_1:+88715166 | None:intergenic |
| AAGGGTAAGAATATCTTCTT+TGG | 0.354876 | 3_1:+88716088 | None:intergenic |
| TTCAAGAGGTACAGATTTAT+CGG | 0.359261 | 3_1:+88715772 | None:intergenic |
| TTATGCTTTCCTCTTTGGTT+GGG | 0.365134 | 3_1:+88718015 | None:intergenic |
| CAATCATTCTGTACTGCCTT+TGG | 0.379050 | 3_1:+88715812 | None:intergenic |
| GACATTACAAATGTTCTTGA+AGG | 0.381084 | 3_1:-88717445 | Msa0385210:CDS |
| ATTATATGAACTCTATTCTT+GGG | 0.387580 | 3_1:-88715216 | Msa0385210:three_prime_UTR |
| ATTATGCTTTCCTCTTTGGT+TGG | 0.394432 | 3_1:+88718014 | None:intergenic |
| AAGCTATAGTGTTGAATTTG+AGG | 0.398643 | 3_1:+88718983 | None:intergenic |
| ACAATTCTGTTAGGCCAACT+TGG | 0.403992 | 3_1:+88715270 | None:intergenic |
| TGGACTTGAGCCACGAGAAC+TGG | 0.409912 | 3_1:-88717271 | Msa0385210:CDS |
| GGTCAATATATGTAAATGTT+AGG | 0.413047 | 3_1:-88715021 | Msa0385210:three_prime_UTR |
| AAAAGGAGTGAAATTGAATT+GGG | 0.420142 | 3_1:+88718827 | None:intergenic |
| AAACTTCAAAGAACCATATA+CGG | 0.421244 | 3_1:-88717405 | Msa0385210:CDS |
| ACCTGTATTTGAAATCTGAT+TGG | 0.422930 | 3_1:+88717957 | None:intergenic |
| TGCCTGGCTACCTACGTAAT+AGG | 0.427347 | 3_1:-88719035 | Msa0385210:five_prime_UTR |
| AAGTTGAATCCCACCTCATC+AGG | 0.430971 | 3_1:+88715912 | None:intergenic |
| GTAGGCATCGCTGACATATA+TGG | 0.444422 | 3_1:-88715042 | Msa0385210:three_prime_UTR |
| ATGATTGTTAGAAGTGCAAC+TGG | 0.445965 | 3_1:-88715796 | Msa0385210:CDS |
| GTCAATTCTCAGTGAAAGAA+AGG | 0.446192 | 3_1:-88716249 | Msa0385210:intron |
| TCTTGGGTTTATCTCTATTG+AGG | 0.448496 | 3_1:-88715200 | Msa0385210:three_prime_UTR |
| AACCAAAGAGGAAAGCATAA+TGG | 0.451388 | 3_1:-88718012 | Msa0385210:CDS |
| GCCAATCAGATTTCAAATAC+AGG | 0.451634 | 3_1:-88717958 | Msa0385210:intron |
| CGGCTGCAGAATGGAGGGTG+TGG | 0.459695 | 3_1:-88715532 | Msa0385210:CDS |
| AATCGTTATGACAGTTCCTT+AGG | 0.462492 | 3_1:-88717812 | Msa0385210:intron |
| AATCCCACCTCATCAGGATC+GGG | 0.468967 | 3_1:+88715918 | None:intergenic |
| CAATTCTGTTAGGCCAACTT+GGG | 0.473073 | 3_1:+88715271 | None:intergenic |
| AATTGACCAATTTGAAGGCC+TGG | 0.473272 | 3_1:-88715172 | Msa0385210:three_prime_UTR |
| GCATCAAGTTAAATCTCTAA+AGG | 0.477562 | 3_1:-88717247 | Msa0385210:intron |
| ATACAAATTGACCAATTTGA+AGG | 0.481403 | 3_1:-88715177 | Msa0385210:three_prime_UTR |
| TTCTCTTCTTCTTAAAGGGA+AGG | 0.487545 | 3_1:+88719087 | None:intergenic |
| TTGGGTTCAGTTTGAAGAAG+TGG | 0.490056 | 3_1:+88718033 | None:intergenic |
| ATCCTATTACGTAGGTAGCC+AGG | 0.492318 | 3_1:+88719033 | None:intergenic |
| TAAAATAGAGTGAGTGAGTG+AGG | 0.493949 | 3_1:+88718942 | None:intergenic |
| TTGTTCAGCACAAGTGCAGT+TGG | 0.495436 | 3_1:-88715129 | Msa0385210:three_prime_UTR |
| CAGTTTGATCAATGAGGCTA+AGG | 0.500273 | 3_1:-88717678 | Msa0385210:CDS |
| AGCTATAGTGTTGAATTTGA+GGG | 0.503959 | 3_1:+88718984 | None:intergenic |
| AGTTGGCCTAACAGAATTGT+GGG | 0.505242 | 3_1:-88715267 | Msa0385210:CDS |
| TAAGCAACTTATTACAATCA+AGG | 0.507030 | 3_1:-88715967 | Msa0385210:CDS |
| TGAGGGTGTGAGTGCCAAGC+AGG | 0.512509 | 3_1:-88715586 | Msa0385210:CDS |
| CTGGTCAAGTTTGTATTCCT+CGG | 0.512943 | 3_1:+88716351 | None:intergenic |
| TCATTCTGTACTGCCTTTGG+TGG | 0.517033 | 3_1:+88715815 | None:intergenic |
| CAAGCACGACCACAAGTTTG+AGG | 0.521197 | 3_1:-88715604 | Msa0385210:CDS |
| AATTCAACAAATTACTCCTA+CGG | 0.521739 | 3_1:-88715436 | Msa0385210:CDS |
| CTGCTACTACTACTAGTGTT+GGG | 0.522294 | 3_1:-88718910 | Msa0385210:five_prime_UTR |
| AAGTTGGCCTAACAGAATTG+TGG | 0.522443 | 3_1:-88715268 | Msa0385210:CDS |
| AAAGGACCTGGAAGCATGGA+AGG | 0.527585 | 3_1:+88716069 | None:intergenic |
| CAGCCGTTGCTACTCCGTGA+TGG | 0.529933 | 3_1:+88715549 | None:intergenic |
| GAGTAGCAACGGCTGCAGAA+TGG | 0.537502 | 3_1:-88715541 | Msa0385210:CDS |
| AGGAATTAGGCTTCCACCAA+AGG | 0.540877 | 3_1:-88715828 | Msa0385210:CDS |
| AAGCACGACCACAAGTTTGA+GGG | 0.544962 | 3_1:-88715603 | Msa0385210:CDS |
| AAAATAAAATCCTATTACGT+AGG | 0.549946 | 3_1:+88719025 | None:intergenic |
| GAATCCCACCTCATCAGGAT+CGG | 0.556366 | 3_1:+88715917 | None:intergenic |
| TTTCAATCAGATCCCCAAGT+TGG | 0.557691 | 3_1:-88715284 | Msa0385210:CDS |
| ACTGCTACTACTACTAGTGT+TGG | 0.558979 | 3_1:-88718911 | Msa0385210:five_prime_UTR |
| TGAGGAATTTGATCGTCGGT+TGG | 0.559998 | 3_1:+88718855 | None:intergenic |
| GGCTGCAGAATGGAGGGTGT+GGG | 0.561995 | 3_1:-88715531 | Msa0385210:CDS |
| ATTTATCAGTTTGATCAATG+AGG | 0.562030 | 3_1:-88717684 | Msa0385210:CDS |
| AAAATAGAGTGAGTGAGTGA+GGG | 0.562597 | 3_1:+88718943 | None:intergenic |
| TCCAAAAGCTAGTTTCATTG+AGG | 0.562628 | 3_1:-88715943 | Msa0385210:CDS |
| TTAACAGTGTTGCTCTGACT+CGG | 0.564080 | 3_1:+88718063 | None:intergenic |
| AAAGGAGCTTATAAGAAACC+TGG | 0.565536 | 3_1:-88716231 | Msa0385210:CDS |
| ACCTAGCGAACCTTATACAC+TGG | 0.568815 | 3_1:+88716332 | None:intergenic |
| GCTATAGTGTTGAATTTGAG+GGG | 0.568867 | 3_1:+88718985 | None:intergenic |
| GGTTCAGTTTGAAGAAGTGG+AGG | 0.575422 | 3_1:+88718036 | None:intergenic |
| CAGAAGAGAAGTACTTCAAG+AGG | 0.575816 | 3_1:+88715758 | None:intergenic |
| CTTATTCACAGGGGATGTGA+TGG | 0.579582 | 3_1:-88717291 | Msa0385210:intron |
| TAGCAACGGCTGCAGAATGG+AGG | 0.582567 | 3_1:-88715538 | Msa0385210:CDS |
| ACTTGATGCTCCAGTTCTCG+TGG | 0.583078 | 3_1:+88717261 | None:intergenic |
| CACTCACACCCTCAAACTTG+TGG | 0.587462 | 3_1:+88715595 | None:intergenic |
| GATCCATCACGGAGTAGCAA+CGG | 0.589664 | 3_1:-88715552 | Msa0385210:CDS |
| TTTAAGTTCGCTTGACTCAG+AGG | 0.590229 | 3_1:-88715466 | Msa0385210:CDS |
| CAAACTGAACCCAACCAAAG+AGG | 0.600334 | 3_1:-88718024 | Msa0385210:CDS |
| AGGAAAGAGCATTATAAACC+AGG | 0.600832 | 3_1:+88715154 | None:intergenic |
| AGCGAACTTAAACTCCCAGA+AGG | 0.601180 | 3_1:+88715477 | None:intergenic |
| CTTATAAGAAACCTGGAGGA+AGG | 0.602931 | 3_1:-88716224 | Msa0385210:CDS |
| TGCACTTGTGCTGAACAAAG+AGG | 0.604527 | 3_1:+88715134 | None:intergenic |
| TTGATCAATGAGGCTAAGGA+TGG | 0.604623 | 3_1:-88717674 | Msa0385210:CDS |
| ATATCGCATTTGCTTAGAGT+AGG | 0.616176 | 3_1:-88715060 | Msa0385210:three_prime_UTR |
| GTGGGATTATTAGAAAACCA+AGG | 0.618758 | 3_1:-88715513 | Msa0385210:CDS |
| AGCAACGGCTGCAGAATGGA+GGG | 0.619777 | 3_1:-88715537 | Msa0385210:CDS |
| GCGAACTTAAACTCCCAGAA+GGG | 0.628059 | 3_1:+88715478 | None:intergenic |
| AATTCTGTTAGGCCAACTTG+GGG | 0.629313 | 3_1:+88715272 | None:intergenic |
| TGAGGTCCCCGATCCTGATG+AGG | 0.629610 | 3_1:-88715925 | Msa0385210:intron |
| CTATAGTGTTGAATTTGAGG+GGG | 0.633244 | 3_1:+88718986 | None:intergenic |
| CTGGAGGAAGGTGAAAACAC+CGG | 0.635878 | 3_1:-88716212 | Msa0385210:CDS |
| ATTCATACATCCAAATCCGT+AGG | 0.638390 | 3_1:+88715420 | None:intergenic |
| TGGAGGAAGGTGAAAACACC+GGG | 0.639040 | 3_1:-88716211 | Msa0385210:CDS |
| AAAATGAGGAATTTGATCGT+CGG | 0.640396 | 3_1:+88718851 | None:intergenic |
| AGTTGATAGCTTATATGCCG+AGG | 0.657732 | 3_1:-88716368 | Msa0385210:CDS |
| CAAAGTTAGAAGATCCATCA+CGG | 0.671165 | 3_1:-88715563 | Msa0385210:CDS |
| GTTGGCCTAACAGAATTGTG+GGG | 0.672060 | 3_1:-88715266 | Msa0385210:CDS |
| CTTCAAAGAACCATATACGG+TGG | 0.675052 | 3_1:-88717402 | Msa0385210:CDS |
| AAGGACCTGGAAGCATGGAA+GGG | 0.676862 | 3_1:+88716070 | None:intergenic |
| ATCCCACCTCATCAGGATCG+GGG | 0.681264 | 3_1:+88715919 | None:intergenic |
| TTGGCCTAACAGAATTGTGG+GGG | 0.685774 | 3_1:-88715265 | Msa0385210:CDS |
| GGAGCTTATAAGAAACCTGG+AGG | 0.707876 | 3_1:-88716228 | Msa0385210:CDS |
| ACTGTCATAACGATTGACTG+TGG | 0.771835 | 3_1:+88717820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTAT+TGG | - | chr3_1:88715768-88715787 | Msa0385210:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTATT+GGG | - | chr3_1:88715769-88715788 | Msa0385210:intron | 0.0% |
| !! | AAATAAATAAAAATTGAAGA+AGG | + | chr3_1:88715404-88715423 | None:intergenic | 10.0% |
| !!! | ACATTATTTTTATTTTATGT+TGG | - | chr3_1:88716286-88716305 | Msa0385210:intron | 10.0% |
| !!! | CATTATTTTTATTTTATGTT+GGG | - | chr3_1:88716287-88716306 | Msa0385210:intron | 10.0% |
| !! | GTAATAAAGAAAAAAAAATT+AGG | + | chr3_1:88718441-88718460 | None:intergenic | 10.0% |
| !!! | CAAAATAAAAATGAAATTTT+AGG | - | chr3_1:88718801-88718820 | Msa0385210:intron | 10.0% |
| !! | ACTAAAATTAGTATAAGTAA+TGG | + | chr3_1:88715742-88715761 | None:intergenic | 15.0% |
| !!! | AAATATCTAATCTTTTTATC+TGG | - | chr3_1:88716787-88716806 | Msa0385210:intron | 15.0% |
| !! | AATGAAATGATAATATATGA+TGG | - | chr3_1:88716846-88716865 | Msa0385210:intron | 15.0% |
| !! | ATGAAATGATAATATATGAT+GGG | - | chr3_1:88716847-88716866 | Msa0385210:intron | 15.0% |
| !!! | ATGTTTTTTATTTTGTTTGT+TGG | - | chr3_1:88717433-88717452 | Msa0385210:CDS | 15.0% |
| !!! | ACATTACTATTATAATTTGT+GGG | + | chr3_1:88717667-88717686 | None:intergenic | 15.0% |
| !! | AACATTACTATTATAATTTG+TGG | + | chr3_1:88717668-88717687 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTGCAGTTTTT+TGG | + | chr3_1:88718793-88718812 | None:intergenic | 15.0% |
| !! | AATAAAATGAATGAAAACTT+TGG | + | chr3_1:88718827-88718846 | None:intergenic | 15.0% |
| !!! | TATTTTCTCTTCTTCTTAAA+GGG | + | chr3_1:88715082-88715101 | None:intergenic | 20.0% |
| !!! | ATATTTTCTCTTCTTCTTAA+AGG | + | chr3_1:88715083-88715102 | None:intergenic | 20.0% |
| !! | AAAATAAAATCCTATTACGT+AGG | + | chr3_1:88715140-88715159 | None:intergenic | 20.0% |
| !!! | CAAAAAAGATAGGATATTTT+TGG | + | chr3_1:88715477-88715496 | None:intergenic | 20.0% |
| !!! | TTAGGTTGATTCATAATAAT+TGG | + | chr3_1:88715536-88715555 | None:intergenic | 20.0% |
| !! | CTTATAATTATGTTTGCTTA+TGG | - | chr3_1:88715876-88715895 | Msa0385210:intron | 20.0% |
| !!! | TATTTTTATTTTATGTTGGG+TGG | - | chr3_1:88716290-88716309 | Msa0385210:intron | 20.0% |
| !!! | TCATATGTTTTACACATATT+TGG | + | chr3_1:88717696-88717715 | None:intergenic | 20.0% |
| !! | TAAGAAATCAAAACTCATAA+AGG | + | chr3_1:88718001-88718020 | None:intergenic | 20.0% |
| !! | TATCTTCTTTGGTAAAAAAA+AGG | + | chr3_1:88718066-88718085 | None:intergenic | 20.0% |
| !!! | TATACAAAGTTTTCAATACT+TGG | + | chr3_1:88718123-88718142 | None:intergenic | 20.0% |
| !! | ACAAAAGTGAGTAATAATAA+TGG | + | chr3_1:88718158-88718177 | None:intergenic | 20.0% |
| !!! | TTAATATCCTTTTTCATTGT+TGG | - | chr3_1:88718484-88718503 | Msa0385210:intron | 20.0% |
| !! | GGTTATTAATTAATCATTAG+AGG | + | chr3_1:88718772-88718791 | None:intergenic | 20.0% |
| !!! | CATTTTATTTGTATTTTTGC+AGG | - | chr3_1:88718838-88718857 | Msa0385210:CDS | 20.0% |
| !! | ATTATATGAACTCTATTCTT+GGG | - | chr3_1:88718946-88718965 | Msa0385210:five_prime_UTR | 20.0% |
| ! | AAATTGAATTGGGAAAAATG+AGG | + | chr3_1:88715328-88715347 | None:intergenic | 25.0% |
| ! | AAAAGGAGTGAAATTGAATT+GGG | + | chr3_1:88715338-88715357 | None:intergenic | 25.0% |
| ! | TAAAAGGAGTGAAATTGAAT+TGG | + | chr3_1:88715339-88715358 | None:intergenic | 25.0% |
| ! | AACATAGAAGAAGAAGTAAA+AGG | + | chr3_1:88715355-88715374 | None:intergenic | 25.0% |
| ! | TAAAAATTGAAGAAGGAAGA+AGG | + | chr3_1:88715397-88715416 | None:intergenic | 25.0% |
| ! | GGTTAATGTACAAAAAAGAT+AGG | + | chr3_1:88715487-88715506 | None:intergenic | 25.0% |
| ! | AACATGAAGAATAAAGTAAC+AGG | + | chr3_1:88715508-88715527 | None:intergenic | 25.0% |
| !! | CATTGTTGACTAATATTTGT+TGG | + | chr3_1:88715947-88715966 | None:intergenic | 25.0% |
| ! | GATCAAACTGATAAATTTCT+TGG | + | chr3_1:88716474-88716493 | None:intergenic | 25.0% |
| ! | ATTTATCAGTTTGATCAATG+AGG | - | chr3_1:88716478-88716497 | Msa0385210:intron | 25.0% |
| !! | TGTATTATTAAAGCACTAGT+AGG | + | chr3_1:88716620-88716639 | None:intergenic | 25.0% |
| !! | AATTTGACATTTGTCTTTTC+AGG | - | chr3_1:88716674-88716693 | Msa0385210:intron | 25.0% |
| ! | AAACTTCAAAGAACCATATA+CGG | - | chr3_1:88716757-88716776 | Msa0385210:intron | 25.0% |
| !! | TTTTATCTGGTACTTACTAT+TGG | - | chr3_1:88716800-88716819 | Msa0385210:intron | 25.0% |
| ! | TTTATCTGGTACTTACTATT+GGG | - | chr3_1:88716801-88716820 | Msa0385210:intron | 25.0% |
| ! | TTCATCTATAGTATACAAAC+CGG | + | chr3_1:88717175-88717194 | None:intergenic | 25.0% |
| !!! | TAGAAGTATTTCAATCTTGA+GGG | + | chr3_1:88717376-88717395 | None:intergenic | 25.0% |
| !!! | ATAGAAGTATTTCAATCTTG+AGG | + | chr3_1:88717377-88717396 | None:intergenic | 25.0% |
| !!! | TTTATTTTGTTTGTTGGATG+AGG | - | chr3_1:88717439-88717458 | Msa0385210:CDS | 25.0% |
| !! | TTGATTTGATATCATCATGT+TGG | - | chr3_1:88717485-88717504 | Msa0385210:intron | 25.0% |
| ! | TTGGTTCAATTCTGATAATT+TGG | - | chr3_1:88717756-88717775 | Msa0385210:intron | 25.0% |
| ! | AGTGAGTTTATTTGATCATT+AGG | - | chr3_1:88718038-88718057 | Msa0385210:CDS | 25.0% |
| !! | TTTTCAATACTTGGAGAAAA+AGG | + | chr3_1:88718114-88718133 | None:intergenic | 25.0% |
| ! | TAAGCAACTTATTACAATCA+AGG | - | chr3_1:88718195-88718214 | Msa0385210:intron | 25.0% |
| ! | AGGATATTAACAAATAAGCA+CGG | + | chr3_1:88718474-88718493 | None:intergenic | 25.0% |
| ! | CTTTAAACCAACAATGAAAA+AGG | + | chr3_1:88718494-88718513 | None:intergenic | 25.0% |
| ! | GCTACAAGCATATAAAATAT+CGG | + | chr3_1:88718539-88718558 | None:intergenic | 25.0% |
| ! | AATTCAACAAATTACTCCTA+CGG | - | chr3_1:88718726-88718745 | Msa0385210:intron | 25.0% |
| ! | CATTATATGAACTCTATTCT+TGG | - | chr3_1:88718945-88718964 | Msa0385210:five_prime_UTR | 25.0% |
| ! | ATACAAATTGACCAATTTGA+AGG | - | chr3_1:88718985-88719004 | Msa0385210:five_prime_UTR | 25.0% |
| ! | GGTCAATATATGTAAATGTT+AGG | - | chr3_1:88719141-88719160 | Msa0385210:five_prime_UTR | 25.0% |
| !!! | TTTTTATTTTTATCGCTGCC+TGG | - | chr3_1:88715111-88715130 | Msa0385210:three_prime_UTR | 30.0% |
| ! | AGCTATAGTGTTGAATTTGA+GGG | + | chr3_1:88715181-88715200 | None:intergenic | 30.0% |
| ! | AAGCTATAGTGTTGAATTTG+AGG | + | chr3_1:88715182-88715201 | None:intergenic | 30.0% |
| AAAATGAGGAATTTGATCGT+CGG | + | chr3_1:88715314-88715333 | None:intergenic | 30.0% | |
| AAGAGATCTCTTAACATCTT+AGG | + | chr3_1:88715554-88715573 | None:intergenic | 30.0% | |
| ATAACATAGGTGCATTCTTA+GGG | + | chr3_1:88715601-88715620 | None:intergenic | 30.0% | |
| TATAACATAGGTGCATTCTT+AGG | + | chr3_1:88715602-88715621 | None:intergenic | 30.0% | |
| AAGAATGCACCTATGTTATA+TGG | - | chr3_1:88715602-88715621 | Msa0385210:CDS | 30.0% | |
| GAGACTAATCCATATAACAT+AGG | + | chr3_1:88715614-88715633 | None:intergenic | 30.0% | |
| TTAGTTGTTAGAACTGTTCT+AGG | - | chr3_1:88715692-88715711 | Msa0385210:intron | 30.0% | |
| ! | ACCTGTATTTGAAATCTGAT+TGG | + | chr3_1:88716208-88716227 | None:intergenic | 30.0% |
| !!! | AGCAGTTTTATTTAGGTCAA+GGG | + | chr3_1:88716516-88716535 | None:intergenic | 30.0% |
| !!! | AGATCTCAGCAGTTTTATTT+AGG | + | chr3_1:88716523-88716542 | None:intergenic | 30.0% |
| TAAAACTGCTGAGATCTTAA+AGG | - | chr3_1:88716526-88716545 | Msa0385210:intron | 30.0% | |
| TTCATTGTATATATGCTCGA+TGG | - | chr3_1:88716563-88716582 | Msa0385210:intron | 30.0% | |
| !!! | TGTCTTTTCAGGTTCAAAAA+AGG | - | chr3_1:88716685-88716704 | Msa0385210:intron | 30.0% |
| GACATTACAAATGTTCTTGA+AGG | - | chr3_1:88716717-88716736 | Msa0385210:intron | 30.0% | |
| ACAAATGTTCTTGAAGGAAT+AGG | - | chr3_1:88716723-88716742 | Msa0385210:intron | 30.0% | |
| ATATTTACTTCCACCGTATA+TGG | + | chr3_1:88716773-88716792 | None:intergenic | 30.0% | |
| GCATCAAGTTAAATCTCTAA+AGG | - | chr3_1:88716915-88716934 | Msa0385210:intron | 30.0% | |
| !!! | ATCTATTTTTACCTGTCAGT+TGG | - | chr3_1:88716945-88716964 | Msa0385210:intron | 30.0% |
| ATACATATTAACCAACTGAC+AGG | + | chr3_1:88716959-88716978 | None:intergenic | 30.0% | |
| GTATGATCGGATGATTAATT+AGG | - | chr3_1:88717006-88717025 | Msa0385210:intron | 30.0% | |
| ! | TTTAGTTTCTTCCAAGTCAT+AGG | - | chr3_1:88717079-88717098 | Msa0385210:intron | 30.0% |
| ACTGCTAACAACAAATACTT+CGG | + | chr3_1:88717209-88717228 | None:intergenic | 30.0% | |
| AATACAAGTTACTAGCAGTA+AGG | - | chr3_1:88717270-88717289 | Msa0385210:CDS | 30.0% | |
| TTGAAATACTTCTATGTGAC+TGG | - | chr3_1:88717382-88717401 | Msa0385210:intron | 30.0% | |
| TATTACCTGAACCTAAGAAA+GGG | + | chr3_1:88717620-88717639 | None:intergenic | 30.0% | |
| !! | CAGAGCATTAATTTGCTAAA+TGG | + | chr3_1:88717721-88717740 | None:intergenic | 30.0% |
| AAGGGTAAGAATATCTTCTT+TGG | + | chr3_1:88718077-88718096 | None:intergenic | 30.0% | |
| ! | TTCAAGAGGTACAGATTTAT+CGG | + | chr3_1:88718393-88718412 | None:intergenic | 30.0% |
| !! | TTTGTATTTTTGCAGGTTGA+TGG | - | chr3_1:88718845-88718864 | Msa0385210:CDS | 30.0% |
| AACAGAAGAAGAAGAAGAAG+CGG | + | chr3_1:88715019-88715038 | None:intergenic | 35.0% | |
| ! | TCTTCTTCTTCTGTTAGCTT+TGG | - | chr3_1:88715024-88715043 | Msa0385210:three_prime_UTR | 35.0% |
| TTCTCTTCTTCTTAAAGGGA+AGG | + | chr3_1:88715078-88715097 | None:intergenic | 35.0% | |
| ! | CTATAGTGTTGAATTTGAGG+GGG | + | chr3_1:88715179-88715198 | None:intergenic | 35.0% |
| ! | GCTATAGTGTTGAATTTGAG+GGG | + | chr3_1:88715180-88715199 | None:intergenic | 35.0% |
| AAAATAGAGTGAGTGAGTGA+GGG | + | chr3_1:88715222-88715241 | None:intergenic | 35.0% | |
| TAAAATAGAGTGAGTGAGTG+AGG | + | chr3_1:88715223-88715242 | None:intergenic | 35.0% | |
| AGAAGGAAGAAGAAGACTTA+CGG | + | chr3_1:88715380-88715399 | None:intergenic | 35.0% | |
| ATTTCACACACAAGATCGAT+CGG | - | chr3_1:88715437-88715456 | Msa0385210:CDS | 35.0% | |
| AGAGATCTCTTCTTCTTTCA+TGG | - | chr3_1:88715563-88715582 | Msa0385210:CDS | 35.0% | |
| GAGATCTCTTCTTCTTTCAT+GGG | - | chr3_1:88715564-88715583 | Msa0385210:CDS | 35.0% | |
| !! | GTTATATGGATTAGTCTCTG+CGG | - | chr3_1:88715616-88715635 | Msa0385210:intron | 35.0% |
| ! | CAGTTCTAACAACTAACAAG+CGG | + | chr3_1:88715688-88715707 | None:intergenic | 35.0% |
| GCGACAATGTTACAATTTGT+TGG | - | chr3_1:88715793-88715812 | Msa0385210:CDS | 35.0% | |
| ! | GCAAGCATTTAAAGTATGAG+CGG | + | chr3_1:88715992-88716011 | None:intergenic | 35.0% |
| TTATGCTTTCCTCTTTGGTT+GGG | + | chr3_1:88716150-88716169 | None:intergenic | 35.0% | |
| ATTATGCTTTCCTCTTTGGT+TGG | + | chr3_1:88716151-88716170 | None:intergenic | 35.0% | |
| ! | AACCAAAGAGGAAAGCATAA+TGG | - | chr3_1:88716150-88716169 | Msa0385210:intron | 35.0% |
| TACCATTATGCTTTCCTCTT+TGG | + | chr3_1:88716155-88716174 | None:intergenic | 35.0% | |
| GCCAATCAGATTTCAAATAC+AGG | - | chr3_1:88716204-88716223 | Msa0385210:intron | 35.0% | |
| AATCGTTATGACAGTTCCTT+AGG | - | chr3_1:88716350-88716369 | Msa0385210:CDS | 35.0% | |
| CATAAAAGATCACTTGAGTG+TGG | + | chr3_1:88716381-88716400 | None:intergenic | 35.0% | |
| TTACATCATGTACTGTTTGC+AGG | - | chr3_1:88716440-88716459 | Msa0385210:intron | 35.0% | |
| !!! | CAGCAGTTTTATTTAGGTCA+AGG | + | chr3_1:88716517-88716536 | None:intergenic | 35.0% |
| ! | TTTTACGCATCTGGTATGAT+CGG | - | chr3_1:88716993-88717012 | Msa0385210:intron | 35.0% |
| TGTTGTTAGCAGTACAGTTA+AGG | - | chr3_1:88717216-88717235 | Msa0385210:intron | 35.0% | |
| ! | CATTATTTCTTGAAGCCGAA+AGG | - | chr3_1:88717314-88717333 | Msa0385210:intron | 35.0% |
| GAAATATACGCAATCAGTCT+TGG | - | chr3_1:88717584-88717603 | Msa0385210:intron | 35.0% | |
| ! | GTTCCAATTTTCCCTTTCTT+AGG | - | chr3_1:88717606-88717625 | Msa0385210:intron | 35.0% |
| GAACCTAAGAAAGGGAAAAT+TGG | + | chr3_1:88717612-88717631 | None:intergenic | 35.0% | |
| ! | ATTTTCCCTTTCTTAGGTTC+AGG | - | chr3_1:88717612-88717631 | Msa0385210:intron | 35.0% |
| CTATTACCTGAACCTAAGAA+AGG | + | chr3_1:88717621-88717640 | None:intergenic | 35.0% | |
| !! | ATTTGTGGGTAAAGAGTGTT+TGG | + | chr3_1:88717653-88717672 | None:intergenic | 35.0% |
| CAAATTAATGCTCTGCAGTA+TGG | - | chr3_1:88717726-88717745 | Msa0385210:intron | 35.0% | |
| TCTGCAGTATGGAAATTGTT+TGG | - | chr3_1:88717737-88717756 | Msa0385210:intron | 35.0% | |
| ACAAACTTGACCAGTGTATA+AGG | - | chr3_1:88717820-88717839 | Msa0385210:CDS | 35.0% | |
| GTCAATTCTCAGTGAAAGAA+AGG | - | chr3_1:88717913-88717932 | Msa0385210:intron | 35.0% | |
| AAAGGAGCTTATAAGAAACC+TGG | - | chr3_1:88717931-88717950 | Msa0385210:intron | 35.0% | |
| ! | TCCAAAAGCTAGTTTCATTG+AGG | - | chr3_1:88718219-88718238 | Msa0385210:intron | 35.0% |
| !!! | ACCTCAATGAAACTAGCTTT+TGG | + | chr3_1:88718223-88718242 | None:intergenic | 35.0% |
| ! | ATGATTGTTAGAAGTGCAAC+TGG | - | chr3_1:88718366-88718385 | Msa0385210:intron | 35.0% |
| GGTTAGAGACACATGAAATA+CGG | + | chr3_1:88718518-88718537 | None:intergenic | 35.0% | |
| CAAAGTTAGAAGATCCATCA+CGG | - | chr3_1:88718599-88718618 | Msa0385210:intron | 35.0% | |
| GTGGGATTATTAGAAAACCA+AGG | - | chr3_1:88718649-88718668 | Msa0385210:intron | 35.0% | |
| !! | AAGGGTTTTTCTGAAAACCT+TGG | + | chr3_1:88718669-88718688 | None:intergenic | 35.0% |
| ! | GTTTTCAGAAAAACCCTTCT+GGG | - | chr3_1:88718671-88718690 | Msa0385210:intron | 35.0% |
| ACAAATTACTCCTACGGATT+TGG | - | chr3_1:88718732-88718751 | Msa0385210:intron | 35.0% | |
| ATTCATACATCCAAATCCGT+AGG | + | chr3_1:88718745-88718764 | None:intergenic | 35.0% | |
| TCTTGGGTTTATCTCTATTG+AGG | - | chr3_1:88718962-88718981 | Msa0385210:five_prime_UTR | 35.0% | |
| TATAAACCAGGCCTTCAAAT+TGG | + | chr3_1:88718999-88719018 | None:intergenic | 35.0% | |
| !! | AGGAAAGAGCATTATAAACC+AGG | + | chr3_1:88719011-88719030 | None:intergenic | 35.0% |
| ATATCGCATTTGCTTAGAGT+AGG | - | chr3_1:88719102-88719121 | Msa0385210:five_prime_UTR | 35.0% | |
| ACTGCTACTACTACTAGTGT+TGG | - | chr3_1:88715251-88715270 | Msa0385210:exon | 40.0% | |
| CTGCTACTACTACTAGTGTT+GGG | - | chr3_1:88715252-88715271 | Msa0385210:exon | 40.0% | |
| GAAGGAAGAAGAAGACTTAC+GGG | + | chr3_1:88715379-88715398 | None:intergenic | 40.0% | |
| ! | TTAACAGTGTTGCTCTGACT+CGG | + | chr3_1:88716102-88716121 | None:intergenic | 40.0% |
| TTGGGTTCAGTTTGAAGAAG+TGG | + | chr3_1:88716132-88716151 | None:intergenic | 40.0% | |
| CTGAATTCAGAGAGTCTGAT+AGG | + | chr3_1:88716322-88716341 | None:intergenic | 40.0% | |
| ACTGTCATAACGATTGACTG+TGG | + | chr3_1:88716345-88716364 | None:intergenic | 40.0% | |
| CAGTTTGATCAATGAGGCTA+AGG | - | chr3_1:88716484-88716503 | Msa0385210:intron | 40.0% | |
| TTGATCAATGAGGCTAAGGA+TGG | - | chr3_1:88716488-88716507 | Msa0385210:intron | 40.0% | |
| AGTAGGTGAAGCTCAAAATC+AGG | + | chr3_1:88716603-88716622 | None:intergenic | 40.0% | |
| CTTCAAAGAACCATATACGG+TGG | - | chr3_1:88716760-88716779 | Msa0385210:intron | 40.0% | |
| !! | ATATGATGGGCCTTATTCAC+AGG | - | chr3_1:88716860-88716879 | Msa0385210:intron | 40.0% |
| !! | TATGATGGGCCTTATTCACA+GGG | - | chr3_1:88716861-88716880 | Msa0385210:intron | 40.0% |
| ATGCGTAAAAGCAGGAAATG+TGG | + | chr3_1:88716983-88717002 | None:intergenic | 40.0% | |
| !! | ATTTCCTGCTTTTACGCATC+TGG | - | chr3_1:88716984-88717003 | Msa0385210:intron | 40.0% |
| TCTTCCAAGTCATAGGTTTC+AGG | - | chr3_1:88717086-88717105 | Msa0385210:intron | 40.0% | |
| GATTCCTGAAACCTATGACT+TGG | + | chr3_1:88717093-88717112 | None:intergenic | 40.0% | |
| CAGGAATCTTATTGTCTTCG+TGG | - | chr3_1:88717105-88717124 | Msa0385210:intron | 40.0% | |
| TCCTAGGTGCAATGTCTAAT+CGG | + | chr3_1:88717148-88717167 | None:intergenic | 40.0% | |
| TATACAAACCGGAGATTCCT+AGG | + | chr3_1:88717164-88717183 | None:intergenic | 40.0% | |
| ATGTCTTCAGTAGCTCAAGT+TGG | + | chr3_1:88717297-88717316 | None:intergenic | 40.0% | |
| ! | TGAAGCCGAAAGGAAACTTT+TGG | - | chr3_1:88717324-88717343 | Msa0385210:intron | 40.0% |
| ! | GAAGCCGAAAGGAAACTTTT+GGG | - | chr3_1:88717325-88717344 | Msa0385210:intron | 40.0% |
| TCAGCCCAAAAGTTTCCTTT+CGG | + | chr3_1:88717332-88717351 | None:intergenic | 40.0% | |
| !! | GGTAAAGAGTGTTTGGCTAA+AGG | + | chr3_1:88717646-88717665 | None:intergenic | 40.0% |
| CTGATAATTTGGTCCATTGC+AGG | - | chr3_1:88717767-88717786 | Msa0385210:intron | 40.0% | |
| CTATCAACTTCATCCTGCAA+TGG | + | chr3_1:88717783-88717802 | None:intergenic | 40.0% | |
| !! | AGTTGATAGCTTATATGCCG+AGG | - | chr3_1:88717794-88717813 | Msa0385210:intron | 40.0% |
| CTGGTCAAGTTTGTATTCCT+CGG | + | chr3_1:88717814-88717833 | None:intergenic | 40.0% | |
| CTTATAAGAAACCTGGAGGA+AGG | - | chr3_1:88717938-88717957 | Msa0385210:intron | 40.0% | |
| TGTCAGTAGTTCTTACTTCC+CGG | + | chr3_1:88717972-88717991 | None:intergenic | 40.0% | |
| ATACTTGGAGAAAAAGGACC+TGG | + | chr3_1:88718108-88718127 | None:intergenic | 40.0% | |
| GAGGTGGGATTCAACTTATA+TGG | - | chr3_1:88718256-88718275 | Msa0385210:intron | 40.0% | |
| CACTCAAATGAGCAGGAATT+AGG | - | chr3_1:88718321-88718340 | Msa0385210:intron | 40.0% | |
| CAATCATTCTGTACTGCCTT+TGG | + | chr3_1:88718353-88718372 | None:intergenic | 40.0% | |
| !! | CAGAAGAGAAGTACTTCAAG+AGG | + | chr3_1:88718407-88718426 | None:intergenic | 40.0% |
| ATCTTCTAACTTTGCCTGCT+TGG | + | chr3_1:88718593-88718612 | None:intergenic | 40.0% | |
| ! | GGTTTTCAGAAAAACCCTTC+TGG | - | chr3_1:88718670-88718689 | Msa0385210:intron | 40.0% |
| ! | TTTAAGTTCGCTTGACTCAG+AGG | - | chr3_1:88718696-88718715 | Msa0385210:intron | 40.0% |
| !! | TGCAGGTTGATGGTGATTAT+TGG | - | chr3_1:88718855-88718874 | Msa0385210:CDS | 40.0% |
| TTTCAATCAGATCCCCAAGT+TGG | - | chr3_1:88718878-88718897 | Msa0385210:exon | 40.0% | |
| AATTCTGTTAGGCCAACTTG+GGG | + | chr3_1:88718893-88718912 | None:intergenic | 40.0% | |
| CAATTCTGTTAGGCCAACTT+GGG | + | chr3_1:88718894-88718913 | None:intergenic | 40.0% | |
| ACAATTCTGTTAGGCCAACT+TGG | + | chr3_1:88718895-88718914 | None:intergenic | 40.0% | |
| ! | AAGTTGGCCTAACAGAATTG+TGG | - | chr3_1:88718894-88718913 | Msa0385210:five_prime_UTR | 40.0% |
| ! | AGTTGGCCTAACAGAATTGT+GGG | - | chr3_1:88718895-88718914 | Msa0385210:five_prime_UTR | 40.0% |
| AATTGACCAATTTGAAGGCC+TGG | - | chr3_1:88718990-88719009 | Msa0385210:five_prime_UTR | 40.0% | |
| GAAGAAGAAGAAGAAGCGGT+GGG | + | chr3_1:88715015-88715034 | None:intergenic | 45.0% | |
| AGAAGAAGAAGAAGAAGCGG+TGG | + | chr3_1:88715016-88715035 | None:intergenic | 45.0% | |
| ATCCTATTACGTAGGTAGCC+AGG | + | chr3_1:88715132-88715151 | None:intergenic | 45.0% | |
| !! | TGAGTGAGTGAGGGTTTTAG+CGG | + | chr3_1:88715213-88715232 | None:intergenic | 45.0% |
| TGAGGAATTTGATCGTCGGT+TGG | + | chr3_1:88715310-88715329 | None:intergenic | 45.0% | |
| CATAGGTGCATTCTTAGGGT+CGG | + | chr3_1:88715597-88715616 | None:intergenic | 45.0% | |
| !! | TATGGATTAGTCTCTGCGGT+TGG | - | chr3_1:88715620-88715639 | Msa0385210:intron | 45.0% |
| !! | ATGGATTAGTCTCTGCGGTT+GGG | - | chr3_1:88715621-88715640 | Msa0385210:intron | 45.0% |
| !! | GTTGGGCGCTGAATTTAAAG+TGG | - | chr3_1:88715638-88715657 | Msa0385210:intron | 45.0% |
| GGTTCAGTTTGAAGAAGTGG+AGG | + | chr3_1:88716129-88716148 | None:intergenic | 45.0% | |
| CAAACTGAACCCAACCAAAG+AGG | - | chr3_1:88716138-88716157 | Msa0385210:intron | 45.0% | |
| CTTGAGTGTGGACATACCTA+AGG | + | chr3_1:88716369-88716388 | None:intergenic | 45.0% | |
| !! | ATGATGGGCCTTATTCACAG+GGG | - | chr3_1:88716862-88716881 | Msa0385210:intron | 45.0% |
| CATCACATCCCCTGTGAATA+AGG | + | chr3_1:88716873-88716892 | None:intergenic | 45.0% | |
| CTTATTCACAGGGGATGTGA+TGG | - | chr3_1:88716871-88716890 | Msa0385210:intron | 45.0% | |
| CATACCAGATGCGTAAAAGC+AGG | + | chr3_1:88716991-88717010 | None:intergenic | 45.0% | |
| ACCGATTAGACATTGCACCT+AGG | - | chr3_1:88717144-88717163 | Msa0385210:intron | 45.0% | |
| ACATTGCACCTAGGAATCTC+CGG | - | chr3_1:88717153-88717172 | Msa0385210:intron | 45.0% | |
| ACCAGTGTATAAGGTTCGCT+AGG | - | chr3_1:88717829-88717848 | Msa0385210:CDS | 45.0% | |
| ACCTAGCGAACCTTATACAC+TGG | + | chr3_1:88717833-88717852 | None:intergenic | 45.0% | |
| GGAGCTTATAAGAAACCTGG+AGG | - | chr3_1:88717934-88717953 | Msa0385210:intron | 45.0% | |
| AGAAAAAGGACCTGGAAGCA+TGG | + | chr3_1:88718100-88718119 | None:intergenic | 45.0% | |
| AAGTTGAATCCCACCTCATC+AGG | + | chr3_1:88718253-88718272 | None:intergenic | 45.0% | |
| GACTTCTCACTCAAATGAGC+AGG | - | chr3_1:88718314-88718333 | Msa0385210:intron | 45.0% | |
| AGGAATTAGGCTTCCACCAA+AGG | - | chr3_1:88718334-88718353 | Msa0385210:intron | 45.0% | |
| TCATTCTGTACTGCCTTTGG+TGG | + | chr3_1:88718350-88718369 | None:intergenic | 45.0% | |
| AAGCACGACCACAAGTTTGA+GGG | - | chr3_1:88718559-88718578 | Msa0385210:intron | 45.0% | |
| GCGAACTTAAACTCCCAGAA+GGG | + | chr3_1:88718687-88718706 | None:intergenic | 45.0% | |
| AGCGAACTTAAACTCCCAGA+AGG | + | chr3_1:88718688-88718707 | None:intergenic | 45.0% | |
| ! | GTTGGCCTAACAGAATTGTG+GGG | - | chr3_1:88718896-88718915 | Msa0385210:five_prime_UTR | 45.0% |
| TTGGCCTAACAGAATTGTGG+GGG | - | chr3_1:88718897-88718916 | Msa0385210:five_prime_UTR | 45.0% | |
| TCTACCCCCACAATTCTGTT+AGG | + | chr3_1:88718904-88718923 | None:intergenic | 45.0% | |
| TGCACTTGTGCTGAACAAAG+AGG | + | chr3_1:88719031-88719050 | None:intergenic | 45.0% | |
| TTGTTCAGCACAAGTGCAGT+TGG | - | chr3_1:88719033-88719052 | Msa0385210:five_prime_UTR | 45.0% | |
| ! | GTAGGCATCGCTGACATATA+TGG | - | chr3_1:88719120-88719139 | Msa0385210:five_prime_UTR | 45.0% |
| !! | TAAATAGTATATAAAAAATA+TGG | + | chr3_1:88717063-88717082 | None:intergenic | 5.0% |
| !! | TAATAAAGAAAAAAAAATTA+GGG | + | chr3_1:88718440-88718459 | None:intergenic | 5.0% |
| TGCCTGGCTACCTACGTAAT+AGG | - | chr3_1:88715127-88715146 | Msa0385210:three_prime_UTR | 50.0% | |
| GCTCGATGGTTCGTATTAGC+AGG | - | chr3_1:88716577-88716596 | Msa0385210:intron | 50.0% | |
| ACTTGATGCTCCAGTTCTCG+TGG | + | chr3_1:88716904-88716923 | None:intergenic | 50.0% | |
| CAGTACAGTTAAGGCTGCTG+AGG | - | chr3_1:88717225-88717244 | Msa0385210:intron | 50.0% | |
| GCTGCTGAGGATGATAACAG+TGG | - | chr3_1:88717238-88717257 | Msa0385210:intron | 50.0% | |
| CTGGAGGAAGGTGAAAACAC+CGG | - | chr3_1:88717950-88717969 | Msa0385210:intron | 50.0% | |
| TGGAGGAAGGTGAAAACACC+GGG | - | chr3_1:88717951-88717970 | Msa0385210:intron | 50.0% | |
| TCTTACCCTTCCATGCTTCC+AGG | - | chr3_1:88718087-88718106 | Msa0385210:CDS | 50.0% | |
| ! | AAGGACCTGGAAGCATGGAA+GGG | + | chr3_1:88718095-88718114 | None:intergenic | 50.0% |
| ! | AAAGGACCTGGAAGCATGGA+AGG | + | chr3_1:88718096-88718115 | None:intergenic | 50.0% |
| AATCCCACCTCATCAGGATC+GGG | + | chr3_1:88718247-88718266 | None:intergenic | 50.0% | |
| GAATCCCACCTCATCAGGAT+CGG | + | chr3_1:88718248-88718267 | None:intergenic | 50.0% | |
| CAAGCACGACCACAAGTTTG+AGG | - | chr3_1:88718558-88718577 | Msa0385210:intron | 50.0% | |
| CACTCACACCCTCAAACTTG+TGG | + | chr3_1:88718570-88718589 | None:intergenic | 50.0% | |
| GATCCATCACGGAGTAGCAA+CGG | - | chr3_1:88718610-88718629 | Msa0385210:intron | 50.0% | |
| ! | TCGCTTGACTCAGAGGCTTT+TGG | - | chr3_1:88718703-88718722 | Msa0385210:intron | 50.0% |
| !! | TGAGGGTTTTAGCGGCAGGA+AGG | + | chr3_1:88715205-88715224 | None:intergenic | 55.0% |
| !! | TGAGTGAGGGTTTTAGCGGC+AGG | + | chr3_1:88715209-88715228 | None:intergenic | 55.0% |
| TGGACTTGAGCCACGAGAAC+TGG | - | chr3_1:88716891-88716910 | Msa0385210:intron | 55.0% | |
| ! | CGGTGTTTTCACCTTCCTCC+AGG | + | chr3_1:88717952-88717971 | None:intergenic | 55.0% |
| ATCCCACCTCATCAGGATCG+GGG | + | chr3_1:88718246-88718265 | None:intergenic | 55.0% | |
| GAGTAGCAACGGCTGCAGAA+TGG | - | chr3_1:88718621-88718640 | Msa0385210:intron | 55.0% | |
| TAGCAACGGCTGCAGAATGG+AGG | - | chr3_1:88718624-88718643 | Msa0385210:intron | 55.0% | |
| AGCAACGGCTGCAGAATGGA+GGG | - | chr3_1:88718625-88718644 | Msa0385210:intron | 55.0% | |
| TGAGGTCCCCGATCCTGATG+AGG | - | chr3_1:88718237-88718256 | Msa0385210:intron | 60.0% | |
| GTCCCCGATCCTGATGAGGT+GGG | - | chr3_1:88718241-88718260 | Msa0385210:intron | 60.0% | |
| ! | TGAGGGTGTGAGTGCCAAGC+AGG | - | chr3_1:88718576-88718595 | Msa0385210:intron | 60.0% |
| CAGCCGTTGCTACTCCGTGA+TGG | + | chr3_1:88718616-88718635 | None:intergenic | 60.0% | |
| ! | GGCTGCAGAATGGAGGGTGT+GGG | - | chr3_1:88718631-88718650 | Msa0385210:intron | 60.0% |
| GGTCCCCGATCCTGATGAGG+TGG | - | chr3_1:88718240-88718259 | Msa0385210:intron | 65.0% | |
| CGGCTGCAGAATGGAGGGTG+TGG | - | chr3_1:88718630-88718649 | Msa0385210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88715000 | 88719184 | 88715000 | ID=Msa0385210;Name=Msa0385210 |
| chr3_1 | mRNA | 88715000 | 88719184 | 88715000 | ID=Msa0385210-mRNA-1;Parent=Msa0385210;Name=Msa0385210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=298|1|1|1|1|1|13|262|367 |
| chr3_1 | exon | 88715000 | 88715324 | 88715000 | ID=Msa0385210-mRNA-1:exon:24022;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88715428 | 88715626 | 88715428 | ID=Msa0385210-mRNA-1:exon:24021;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88715772 | 88715848 | 88715772 | ID=Msa0385210-mRNA-1:exon:24020;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88715926 | 88715991 | 88715926 | ID=Msa0385210-mRNA-1:exon:24019;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88716076 | 88716124 | 88716076 | ID=Msa0385210-mRNA-1:exon:24018;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88716209 | 88716259 | 88716209 | ID=Msa0385210-mRNA-1:exon:24017;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88716343 | 88716395 | 88716343 | ID=Msa0385210-mRNA-1:exon:24016;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88717248 | 88717302 | 88717248 | ID=Msa0385210-mRNA-1:exon:24015;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88717400 | 88717488 | 88717400 | ID=Msa0385210-mRNA-1:exon:24014;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88717637 | 88717722 | 88717637 | ID=Msa0385210-mRNA-1:exon:24013;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88717813 | 88717857 | 88717813 | ID=Msa0385210-mRNA-1:exon:24012;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88717959 | 88718148 | 88717959 | ID=Msa0385210-mRNA-1:exon:24011;Parent=Msa0385210-mRNA-1 |
| chr3_1 | exon | 88718806 | 88719184 | 88718806 | ID=Msa0385210-mRNA-1:exon:24010;Parent=Msa0385210-mRNA-1 |
| chr3_1 | five_prime_UTR | 88718887 | 88719184 | 88718887 | ID=Msa0385210-mRNA-1:five_prime_utr;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88718806 | 88718886 | 88718806 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88717959 | 88718148 | 88717959 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88717813 | 88717857 | 88717813 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88717637 | 88717722 | 88717637 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88717400 | 88717488 | 88717400 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88717248 | 88717302 | 88717248 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88716343 | 88716395 | 88716343 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88716209 | 88716259 | 88716209 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88716076 | 88716124 | 88716076 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88715926 | 88715991 | 88715926 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88715772 | 88715848 | 88715772 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88715428 | 88715626 | 88715428 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | CDS | 88715262 | 88715324 | 88715262 | ID=Msa0385210-mRNA-1:cds;Parent=Msa0385210-mRNA-1 |
| chr3_1 | three_prime_UTR | 88715000 | 88715261 | 88715000 | ID=Msa0385210-mRNA-1:three_prime_utr;Parent=Msa0385210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
