Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435540 | XP_024633944.2 | 96.739 | 368 | 10 | 1 | 1 | 366 | 1 | 368 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435540 | sp|Q9FV70|E2FC_ARATH | 51.505 | 299 | 113 | 8 | 70 | 366 | 123 | 391 | 1.11e-88 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435540 | A0A396J346 | 96.739 | 368 | 10 | 1 | 1 | 366 | 1 | 368 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0435540 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385210 | Msa0435540 | 0.918175 | 2.154005e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435540 | MtrunA17_Chr3g0142581 | 96.739 | 368 | 10 | 1 | 1 | 366 | 1 | 368 | 0.0 | 735 |
| Msa0435540 | MtrunA17_Chr1g0177351 | 46.970 | 330 | 157 | 6 | 53 | 366 | 92 | 419 | 7.70e-86 | 267 |
| Msa0435540 | MtrunA17_Chr4g0025881 | 45.397 | 315 | 155 | 4 | 69 | 366 | 100 | 414 | 1.31e-84 | 264 |
| Msa0435540 | MtrunA17_Chr4g0059551 | 46.377 | 69 | 37 | 0 | 97 | 165 | 14 | 82 | 9.69e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435540 | AT1G47870.2 | 51.505 | 299 | 113 | 8 | 70 | 366 | 122 | 390 | 1.06e-89 | 275 |
| Msa0435540 | AT1G47870.1 | 51.505 | 299 | 113 | 8 | 70 | 366 | 123 | 391 | 1.13e-89 | 275 |
| Msa0435540 | AT5G22220.3 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 8.63e-80 | 252 |
| Msa0435540 | AT5G22220.2 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 9.25e-80 | 252 |
| Msa0435540 | AT2G36010.1 | 41.716 | 338 | 175 | 6 | 50 | 366 | 112 | 448 | 2.01e-74 | 239 |
| Msa0435540 | AT2G36010.3 | 41.593 | 339 | 176 | 6 | 50 | 366 | 112 | 450 | 4.42e-73 | 235 |
| Msa0435540 | AT2G36010.2 | 38.507 | 335 | 171 | 8 | 50 | 366 | 162 | 479 | 7.75e-60 | 201 |
| Msa0435540 | AT5G14960.1 | 40.964 | 83 | 48 | 1 | 92 | 174 | 5 | 86 | 1.83e-12 | 68.2 |
| Msa0435540 | AT3G48160.1 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 3.70e-12 | 67.4 |
| Msa0435540 | AT3G48160.2 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 4.00e-12 | 67.4 |
| Msa0435540 | AT3G01330.1 | 37.500 | 88 | 54 | 1 | 89 | 176 | 10 | 96 | 8.93e-11 | 63.2 |
Find 115 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTGATAAATTTCT+TGG | 0.195269 | 3_2:+88723598 | None:intergenic |
| TACCATTATGCTTTCCTCTT+TGG | 0.206217 | 3_2:+88723917 | None:intergenic |
| ACAAATTACTCCTACGGATT+TGG | 0.244715 | 3_2:-88721334 | Msa0435540:CDS |
| TCGCTTGACTCAGAGGCTTT+TGG | 0.259553 | 3_2:-88721363 | Msa0435540:CDS |
| TAAAACTGCTGAGATCTTAA+AGG | 0.260105 | 3_2:-88723543 | Msa0435540:intron |
| ATATTTACTTCCACCGTATA+TGG | 0.272766 | 3_2:+88723296 | None:intergenic |
| TGCAGGTTGATGGTGATTAT+TGG | 0.273035 | 3_2:-88721211 | Msa0435540:intron |
| CATTATATGAACTCTATTCT+TGG | 0.291893 | 3_2:-88721121 | Msa0435540:three_prime_UTR |
| TCTTACCCTTCCATGCTTCC+AGG | 0.295518 | 3_2:-88721979 | Msa0435540:intron |
| AACATAGAAGAAGAAGTAAA+AGG | 0.295787 | 3_2:+88724704 | None:intergenic |
| TCTTCTTCTTCTGTTAGCTT+TGG | 0.304931 | 3_2:-88725036 | Msa0435540:five_prime_UTR |
| CACTCAAATGAGCAGGAATT+AGG | 0.313374 | 3_2:-88721745 | Msa0435540:intron |
| TAAAAGGAGTGAAATTGAAT+TGG | 0.316779 | 3_2:+88724720 | None:intergenic |
| ACAAATGTTCTTGAAGGAAT+AGG | 0.317166 | 3_2:-88723343 | Msa0435540:CDS |
| ATCTTCTAACTTTGCCTGCT+TGG | 0.327328 | 3_2:+88721476 | None:intergenic |
| ACAAACTTGACCAGTGTATA+AGG | 0.337642 | 3_2:-88722246 | Msa0435540:intron |
| ACCTCAATGAAACTAGCTTT+TGG | 0.340106 | 3_2:+88721846 | None:intergenic |
| TATAAACCAGGCCTTCAAAT+TGG | 0.347684 | 3_2:+88721070 | None:intergenic |
| AAGGGTAAGAATATCTTCTT+TGG | 0.354876 | 3_2:+88721992 | None:intergenic |
| TTCAAGAGGTACAGATTTAT+CGG | 0.359261 | 3_2:+88721676 | None:intergenic |
| TTATGCTTTCCTCTTTGGTT+GGG | 0.365134 | 3_2:+88723922 | None:intergenic |
| CAATCATTCTGTACTGCCTT+TGG | 0.379050 | 3_2:+88721716 | None:intergenic |
| GACATTACAAATGTTCTTGA+AGG | 0.381084 | 3_2:-88723349 | Msa0435540:CDS |
| ATTATATGAACTCTATTCTT+GGG | 0.387580 | 3_2:-88721120 | Msa0435540:three_prime_UTR |
| ATTATGCTTTCCTCTTTGGT+TGG | 0.394432 | 3_2:+88723921 | None:intergenic |
| AAGCTATAGTGTTGAATTTG+AGG | 0.398643 | 3_2:+88724881 | None:intergenic |
| ACAATTCTGTTAGGCCAACT+TGG | 0.403992 | 3_2:+88721174 | None:intergenic |
| TGGACTTGAGCCACGAGAAC+TGG | 0.409912 | 3_2:-88723175 | Msa0435540:CDS |
| GGTCAATATATGTAAATGTT+AGG | 0.413047 | 3_2:-88720925 | Msa0435540:three_prime_UTR |
| ATAGAGTGAGTGAGTGAGTG+AGG | 0.417755 | 3_2:+88724840 | None:intergenic |
| AAAAGGAGTGAAATTGAATT+GGG | 0.420142 | 3_2:+88724721 | None:intergenic |
| AAACTTCAAAGAACCATATA+CGG | 0.421244 | 3_2:-88723309 | Msa0435540:CDS |
| ACCTGTATTTGAAATCTGAT+TGG | 0.422930 | 3_2:+88723864 | None:intergenic |
| TGCCTGGCTACCTACGTAAT+AGG | 0.427347 | 3_2:-88724933 | Msa0435540:five_prime_UTR |
| AAGTTGAATCCCACCTCATC+AGG | 0.430971 | 3_2:+88721816 | None:intergenic |
| GTAGGCATCGCTGACATATA+TGG | 0.444422 | 3_2:-88720946 | Msa0435540:three_prime_UTR |
| ATGATTGTTAGAAGTGCAAC+TGG | 0.445965 | 3_2:-88721700 | Msa0435540:CDS |
| GTCAATTCTCAGTGAAAGAA+AGG | 0.446192 | 3_2:-88722153 | Msa0435540:intron |
| TCTTGGGTTTATCTCTATTG+AGG | 0.448496 | 3_2:-88721104 | Msa0435540:three_prime_UTR |
| AACCAAAGAGGAAAGCATAA+TGG | 0.451388 | 3_2:-88723919 | Msa0435540:CDS |
| GCCAATCAGATTTCAAATAC+AGG | 0.451634 | 3_2:-88723865 | Msa0435540:intron |
| CGGCTGCAGAATGGAGGGTG+TGG | 0.459695 | 3_2:-88721436 | Msa0435540:CDS |
| AATCGTTATGACAGTTCCTT+AGG | 0.462492 | 3_2:-88723719 | Msa0435540:intron |
| AATCCCACCTCATCAGGATC+GGG | 0.468967 | 3_2:+88721822 | None:intergenic |
| CAATTCTGTTAGGCCAACTT+GGG | 0.473073 | 3_2:+88721175 | None:intergenic |
| AATTGACCAATTTGAAGGCC+TGG | 0.473272 | 3_2:-88721076 | Msa0435540:three_prime_UTR |
| GCATCAAGTTAAATCTCTAA+AGG | 0.477562 | 3_2:-88723151 | Msa0435540:intron |
| ATACAAATTGACCAATTTGA+AGG | 0.481403 | 3_2:-88721081 | Msa0435540:three_prime_UTR |
| TTCTCTTCTTCTTAAAGGGA+AGG | 0.487545 | 3_2:+88724985 | None:intergenic |
| TTGGGTTCAGTTTGAAGAAG+TGG | 0.490056 | 3_2:+88723940 | None:intergenic |
| ATCCTATTACGTAGGTAGCC+AGG | 0.492318 | 3_2:+88724931 | None:intergenic |
| TTGTTCAGCACAAGTGCAGT+TGG | 0.495436 | 3_2:-88721033 | Msa0435540:three_prime_UTR |
| CAGTTTGATCAATGAGGCTA+AGG | 0.500273 | 3_2:-88723585 | Msa0435540:CDS |
| AGCTATAGTGTTGAATTTGA+GGG | 0.503959 | 3_2:+88724882 | None:intergenic |
| AGTTGGCCTAACAGAATTGT+GGG | 0.505242 | 3_2:-88721171 | Msa0435540:CDS |
| TAAGCAACTTATTACAATCA+AGG | 0.507030 | 3_2:-88721871 | Msa0435540:CDS |
| TGAGGGTGTGAGTGCCAAGC+AGG | 0.512509 | 3_2:-88721490 | Msa0435540:CDS |
| CTGGTCAAGTTTGTATTCCT+CGG | 0.512943 | 3_2:+88722255 | None:intergenic |
| TCATTCTGTACTGCCTTTGG+TGG | 0.517033 | 3_2:+88721719 | None:intergenic |
| TAGAGTGAGTGAGTGAGTGA+GGG | 0.517085 | 3_2:+88724841 | None:intergenic |
| CAAGCACGACCACAAGTTTG+AGG | 0.521197 | 3_2:-88721508 | Msa0435540:CDS |
| AATTCAACAAATTACTCCTA+CGG | 0.521739 | 3_2:-88721340 | Msa0435540:CDS |
| CTGCTACTACTACTAGTGTT+GGG | 0.522294 | 3_2:-88724804 | Msa0435540:five_prime_UTR |
| AAGTTGGCCTAACAGAATTG+TGG | 0.522443 | 3_2:-88721172 | Msa0435540:CDS |
| AAAGGACCTGGAAGCATGGA+AGG | 0.527585 | 3_2:+88721973 | None:intergenic |
| CAGCCGTTGCTACTCCGTGA+TGG | 0.529933 | 3_2:+88721453 | None:intergenic |
| GAGTAGCAACGGCTGCAGAA+TGG | 0.537502 | 3_2:-88721445 | Msa0435540:CDS |
| AGGAATTAGGCTTCCACCAA+AGG | 0.540877 | 3_2:-88721732 | Msa0435540:CDS |
| AAGCACGACCACAAGTTTGA+GGG | 0.544962 | 3_2:-88721507 | Msa0435540:CDS |
| AAAATAAAATCCTATTACGT+AGG | 0.549946 | 3_2:+88724923 | None:intergenic |
| GAATCCCACCTCATCAGGAT+CGG | 0.556366 | 3_2:+88721821 | None:intergenic |
| TTTCAATCAGATCCCCAAGT+TGG | 0.557691 | 3_2:-88721188 | Msa0435540:CDS |
| ACTGCTACTACTACTAGTGT+TGG | 0.558979 | 3_2:-88724805 | Msa0435540:five_prime_UTR |
| TGAGGAATTTGATCGTCGGT+TGG | 0.559998 | 3_2:+88724749 | None:intergenic |
| GGCTGCAGAATGGAGGGTGT+GGG | 0.561995 | 3_2:-88721435 | Msa0435540:CDS |
| ATTTATCAGTTTGATCAATG+AGG | 0.562030 | 3_2:-88723591 | Msa0435540:CDS |
| TCCAAAAGCTAGTTTCATTG+AGG | 0.562628 | 3_2:-88721847 | Msa0435540:CDS |
| TTAACAGTGTTGCTCTGACT+CGG | 0.564080 | 3_2:+88723970 | None:intergenic |
| AAAGGAGCTTATAAGAAACC+TGG | 0.565536 | 3_2:-88722135 | Msa0435540:CDS |
| ACCTAGCGAACCTTATACAC+TGG | 0.568815 | 3_2:+88722236 | None:intergenic |
| GCTATAGTGTTGAATTTGAG+GGG | 0.568867 | 3_2:+88724883 | None:intergenic |
| GGTTCAGTTTGAAGAAGTGG+AGG | 0.575422 | 3_2:+88723943 | None:intergenic |
| CAGAAGAGAAGTACTTCAAG+AGG | 0.575816 | 3_2:+88721662 | None:intergenic |
| CTTATTCACAGGGGATGTGA+TGG | 0.579582 | 3_2:-88723195 | Msa0435540:intron |
| TAGCAACGGCTGCAGAATGG+AGG | 0.582567 | 3_2:-88721442 | Msa0435540:CDS |
| ACTTGATGCTCCAGTTCTCG+TGG | 0.583078 | 3_2:+88723165 | None:intergenic |
| CACTCACACCCTCAAACTTG+TGG | 0.587462 | 3_2:+88721499 | None:intergenic |
| GATCCATCACGGAGTAGCAA+CGG | 0.589664 | 3_2:-88721456 | Msa0435540:CDS |
| TTTAAGTTCGCTTGACTCAG+AGG | 0.590229 | 3_2:-88721370 | Msa0435540:CDS |
| CAAACTGAACCCAACCAAAG+AGG | 0.600334 | 3_2:-88723931 | Msa0435540:CDS |
| AGGAAAGAGCATTATAAACC+AGG | 0.600832 | 3_2:+88721058 | None:intergenic |
| AGCGAACTTAAACTCCCAGA+AGG | 0.601180 | 3_2:+88721381 | None:intergenic |
| CTTATAAGAAACCTGGAGGA+AGG | 0.602931 | 3_2:-88722128 | Msa0435540:CDS |
| TGCACTTGTGCTGAACAAAG+AGG | 0.604527 | 3_2:+88721038 | None:intergenic |
| TTGATCAATGAGGCTAAGGA+TGG | 0.604623 | 3_2:-88723581 | Msa0435540:CDS |
| ATATCGCATTTGCTTAGAGT+AGG | 0.616176 | 3_2:-88720964 | Msa0435540:three_prime_UTR |
| GTGGGATTATTAGAAAACCA+AGG | 0.618758 | 3_2:-88721417 | Msa0435540:CDS |
| AGCAACGGCTGCAGAATGGA+GGG | 0.619777 | 3_2:-88721441 | Msa0435540:CDS |
| GCGAACTTAAACTCCCAGAA+GGG | 0.628059 | 3_2:+88721382 | None:intergenic |
| AATTCTGTTAGGCCAACTTG+GGG | 0.629313 | 3_2:+88721176 | None:intergenic |
| TGAGGTCCCCGATCCTGATG+AGG | 0.629610 | 3_2:-88721829 | Msa0435540:intron |
| CTATAGTGTTGAATTTGAGG+GGG | 0.633244 | 3_2:+88724884 | None:intergenic |
| CTGGAGGAAGGTGAAAACAC+CGG | 0.635878 | 3_2:-88722116 | Msa0435540:CDS |
| ATTCATACATCCAAATCCGT+AGG | 0.638390 | 3_2:+88721324 | None:intergenic |
| TGGAGGAAGGTGAAAACACC+GGG | 0.639040 | 3_2:-88722115 | Msa0435540:CDS |
| AAAATGAGGAATTTGATCGT+CGG | 0.640396 | 3_2:+88724745 | None:intergenic |
| AGTTGATAGCTTATATGCCG+AGG | 0.657732 | 3_2:-88722272 | Msa0435540:CDS |
| CAAAGTTAGAAGATCCATCA+CGG | 0.671165 | 3_2:-88721467 | Msa0435540:CDS |
| GTTGGCCTAACAGAATTGTG+GGG | 0.672060 | 3_2:-88721170 | Msa0435540:CDS |
| CTTCAAAGAACCATATACGG+TGG | 0.675052 | 3_2:-88723306 | Msa0435540:CDS |
| AAGGACCTGGAAGCATGGAA+GGG | 0.676862 | 3_2:+88721974 | None:intergenic |
| ATCCCACCTCATCAGGATCG+GGG | 0.681264 | 3_2:+88721823 | None:intergenic |
| TTGGCCTAACAGAATTGTGG+GGG | 0.685774 | 3_2:-88721169 | Msa0435540:CDS |
| GGAGCTTATAAGAAACCTGG+AGG | 0.707876 | 3_2:-88722132 | Msa0435540:CDS |
| ACTGTCATAACGATTGACTG+TGG | 0.771835 | 3_2:+88723727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAAAATTGAAGA+AGG | + | chr3_2:88721315-88721334 | None:intergenic | 10.0% |
| !!! | ACATTATTTTTATTTTATGT+TGG | - | chr3_2:88722184-88722203 | Msa0435540:intron | 10.0% |
| !!! | CATTATTTTTATTTTATGTT+GGG | - | chr3_2:88722185-88722204 | Msa0435540:intron | 10.0% |
| !! | GTAATAAAGAAAAAAAAATT+AGG | + | chr3_2:88724342-88724361 | None:intergenic | 10.0% |
| !!! | CAAAATAAAAATGAAATTTT+AGG | - | chr3_2:88724702-88724721 | Msa0435540:CDS | 10.0% |
| !! | ACTAAAATTAGTATAAGTAA+TGG | + | chr3_2:88721653-88721672 | None:intergenic | 15.0% |
| !!! | TTTTAGTGCTTTTTTTTTAT+TGG | - | chr3_2:88721666-88721685 | Msa0435540:intron | 15.0% |
| !!! | TTTAGTGCTTTTTTTTTATT+GGG | - | chr3_2:88721667-88721686 | Msa0435540:intron | 15.0% |
| !!! | AAATATCTAATCTTTTTATC+TGG | - | chr3_2:88722688-88722707 | Msa0435540:intron | 15.0% |
| !! | AATGAAATGATAATATATGA+TGG | - | chr3_2:88722747-88722766 | Msa0435540:intron | 15.0% |
| !! | ATGAAATGATAATATATGAT+GGG | - | chr3_2:88722748-88722767 | Msa0435540:intron | 15.0% |
| !!! | ATGTTTTTTATTTTGTTTGT+TGG | - | chr3_2:88723334-88723353 | Msa0435540:CDS | 15.0% |
| !!! | ACATTACTATTATAATTTGT+GGG | + | chr3_2:88723568-88723587 | None:intergenic | 15.0% |
| !! | AACATTACTATTATAATTTG+TGG | + | chr3_2:88723569-88723588 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTGCAGTTTTT+TGG | + | chr3_2:88724694-88724713 | None:intergenic | 15.0% |
| !! | AATAAAATGAATGAAAACTT+TGG | + | chr3_2:88724728-88724747 | None:intergenic | 15.0% |
| !!! | TATTTTCTCTTCTTCTTAAA+GGG | + | chr3_2:88720989-88721008 | None:intergenic | 20.0% |
| !!! | ATATTTTCTCTTCTTCTTAA+AGG | + | chr3_2:88720990-88721009 | None:intergenic | 20.0% |
| !! | AAAATAAAATCCTATTACGT+AGG | + | chr3_2:88721047-88721066 | None:intergenic | 20.0% |
| !!! | CAAAAAAGATAGGATATTTT+TGG | + | chr3_2:88721388-88721407 | None:intergenic | 20.0% |
| !!! | TTAGGTTGATTCATAATAAT+TGG | + | chr3_2:88721447-88721466 | None:intergenic | 20.0% |
| !! | CTTATAATTATGTTTGCTTA+TGG | - | chr3_2:88721774-88721793 | Msa0435540:intron | 20.0% |
| !!! | TATTTTTATTTTATGTTGGG+TGG | - | chr3_2:88722188-88722207 | Msa0435540:intron | 20.0% |
| !!! | TCATATGTTTTACACATATT+TGG | + | chr3_2:88723597-88723616 | None:intergenic | 20.0% |
| !! | TAAGAAATCAAAACTCATAA+AGG | + | chr3_2:88723902-88723921 | None:intergenic | 20.0% |
| !! | TATCTTCTTTGGTAAAAAAA+AGG | + | chr3_2:88723967-88723986 | None:intergenic | 20.0% |
| !!! | TATACAAAGTTTTCAATACT+TGG | + | chr3_2:88724024-88724043 | None:intergenic | 20.0% |
| !! | ACAAAAGTGAGTAATAATAA+TGG | + | chr3_2:88724059-88724078 | None:intergenic | 20.0% |
| !!! | TTAATATCCTTTTTCATTGT+TGG | - | chr3_2:88724385-88724404 | Msa0435540:intron | 20.0% |
| !! | GGTTATTAATTAATCATTAG+AGG | + | chr3_2:88724673-88724692 | None:intergenic | 20.0% |
| !!! | CATTTTATTTGTATTTTTGC+AGG | - | chr3_2:88724739-88724758 | Msa0435540:CDS | 20.0% |
| !! | ATTATATGAACTCTATTCTT+GGG | - | chr3_2:88724847-88724866 | Msa0435540:five_prime_UTR | 20.0% |
| ! | AAATTGAATTGGGAAAAATG+AGG | + | chr3_2:88721239-88721258 | None:intergenic | 25.0% |
| ! | AAAAGGAGTGAAATTGAATT+GGG | + | chr3_2:88721249-88721268 | None:intergenic | 25.0% |
| ! | TAAAAGGAGTGAAATTGAAT+TGG | + | chr3_2:88721250-88721269 | None:intergenic | 25.0% |
| ! | AACATAGAAGAAGAAGTAAA+AGG | + | chr3_2:88721266-88721285 | None:intergenic | 25.0% |
| ! | TAAAAATTGAAGAAGGAAGA+AGG | + | chr3_2:88721308-88721327 | None:intergenic | 25.0% |
| ! | GGTTAATGTACAAAAAAGAT+AGG | + | chr3_2:88721398-88721417 | None:intergenic | 25.0% |
| ! | AACATGAAGAATAAAGTAAC+AGG | + | chr3_2:88721419-88721438 | None:intergenic | 25.0% |
| !! | CATTGTTGACTAATATTTGT+TGG | + | chr3_2:88721845-88721864 | None:intergenic | 25.0% |
| ! | GATCAAACTGATAAATTTCT+TGG | + | chr3_2:88722372-88722391 | None:intergenic | 25.0% |
| ! | ATTTATCAGTTTGATCAATG+AGG | - | chr3_2:88722376-88722395 | Msa0435540:intron | 25.0% |
| !! | TGTATTATTAAAGCACTAGT+AGG | + | chr3_2:88722518-88722537 | None:intergenic | 25.0% |
| !! | AATTTGACATTTGTCTTTTC+AGG | - | chr3_2:88722575-88722594 | Msa0435540:intron | 25.0% |
| ! | AAACTTCAAAGAACCATATA+CGG | - | chr3_2:88722658-88722677 | Msa0435540:intron | 25.0% |
| !! | TTTTATCTGGTACTTACTAT+TGG | - | chr3_2:88722701-88722720 | Msa0435540:intron | 25.0% |
| ! | TTTATCTGGTACTTACTATT+GGG | - | chr3_2:88722702-88722721 | Msa0435540:intron | 25.0% |
| ! | TTCATCTATAGTATACAAAC+CGG | + | chr3_2:88723076-88723095 | None:intergenic | 25.0% |
| !!! | TAGAAGTATTTCAATCTTGA+GGG | + | chr3_2:88723277-88723296 | None:intergenic | 25.0% |
| !!! | ATAGAAGTATTTCAATCTTG+AGG | + | chr3_2:88723278-88723297 | None:intergenic | 25.0% |
| !!! | TTTATTTTGTTTGTTGGATG+AGG | - | chr3_2:88723340-88723359 | Msa0435540:CDS | 25.0% |
| !! | TTGATTTGATATCATCATGT+TGG | - | chr3_2:88723386-88723405 | Msa0435540:intron | 25.0% |
| ! | TTGGTTCAATTCTGATAATT+TGG | - | chr3_2:88723657-88723676 | Msa0435540:intron | 25.0% |
| ! | AGTGAGTTTATTTGATCATT+AGG | - | chr3_2:88723939-88723958 | Msa0435540:CDS | 25.0% |
| !! | TTTTCAATACTTGGAGAAAA+AGG | + | chr3_2:88724015-88724034 | None:intergenic | 25.0% |
| ! | TAAGCAACTTATTACAATCA+AGG | - | chr3_2:88724096-88724115 | Msa0435540:intron | 25.0% |
| ! | AGGATATTAACAAATAAGCA+CGG | + | chr3_2:88724375-88724394 | None:intergenic | 25.0% |
| ! | CTTTAAACCAACAATGAAAA+AGG | + | chr3_2:88724395-88724414 | None:intergenic | 25.0% |
| ! | GCTACAAGCATATAAAATAT+CGG | + | chr3_2:88724440-88724459 | None:intergenic | 25.0% |
| ! | AATTCAACAAATTACTCCTA+CGG | - | chr3_2:88724627-88724646 | Msa0435540:intron | 25.0% |
| ! | CATTATATGAACTCTATTCT+TGG | - | chr3_2:88724846-88724865 | Msa0435540:five_prime_UTR | 25.0% |
| ! | ATACAAATTGACCAATTTGA+AGG | - | chr3_2:88724886-88724905 | Msa0435540:five_prime_UTR | 25.0% |
| ! | GGTCAATATATGTAAATGTT+AGG | - | chr3_2:88725042-88725061 | Msa0435540:five_prime_UTR | 25.0% |
| !!! | TTTTTATTTTTATCGCTGCC+TGG | - | chr3_2:88721018-88721037 | Msa0435540:three_prime_UTR | 30.0% |
| ! | AGCTATAGTGTTGAATTTGA+GGG | + | chr3_2:88721088-88721107 | None:intergenic | 30.0% |
| ! | AAGCTATAGTGTTGAATTTG+AGG | + | chr3_2:88721089-88721108 | None:intergenic | 30.0% |
| AAAATGAGGAATTTGATCGT+CGG | + | chr3_2:88721225-88721244 | None:intergenic | 30.0% | |
| AAGAGATCTCTTAACATCTT+AGG | + | chr3_2:88721465-88721484 | None:intergenic | 30.0% | |
| ATAACATAGGTGCATTCTTA+GGG | + | chr3_2:88721512-88721531 | None:intergenic | 30.0% | |
| TATAACATAGGTGCATTCTT+AGG | + | chr3_2:88721513-88721532 | None:intergenic | 30.0% | |
| AAGAATGCACCTATGTTATA+TGG | - | chr3_2:88721513-88721532 | Msa0435540:intron | 30.0% | |
| GAGACTAATCCATATAACAT+AGG | + | chr3_2:88721525-88721544 | None:intergenic | 30.0% | |
| TTAGTTGTTAGAACTGTTCT+AGG | - | chr3_2:88721603-88721622 | Msa0435540:intron | 30.0% | |
| ! | ACCTGTATTTGAAATCTGAT+TGG | + | chr3_2:88722106-88722125 | None:intergenic | 30.0% |
| !!! | AGCAGTTTTATTTAGGTCAA+GGG | + | chr3_2:88722414-88722433 | None:intergenic | 30.0% |
| !!! | AGATCTCAGCAGTTTTATTT+AGG | + | chr3_2:88722421-88722440 | None:intergenic | 30.0% |
| TAAAACTGCTGAGATCTTAA+AGG | - | chr3_2:88722424-88722443 | Msa0435540:intron | 30.0% | |
| TTCATTGTATATATGCTCGA+TGG | - | chr3_2:88722461-88722480 | Msa0435540:intron | 30.0% | |
| !!! | TGTCTTTTCAGGTTCAAAAA+AGG | - | chr3_2:88722586-88722605 | Msa0435540:intron | 30.0% |
| GACATTACAAATGTTCTTGA+AGG | - | chr3_2:88722618-88722637 | Msa0435540:intron | 30.0% | |
| ACAAATGTTCTTGAAGGAAT+AGG | - | chr3_2:88722624-88722643 | Msa0435540:intron | 30.0% | |
| ATATTTACTTCCACCGTATA+TGG | + | chr3_2:88722674-88722693 | None:intergenic | 30.0% | |
| GCATCAAGTTAAATCTCTAA+AGG | - | chr3_2:88722816-88722835 | Msa0435540:intron | 30.0% | |
| !!! | ATCTATTTTTACCTGTCAGT+TGG | - | chr3_2:88722846-88722865 | Msa0435540:intron | 30.0% |
| ATACATATTAACCAACTGAC+AGG | + | chr3_2:88722860-88722879 | None:intergenic | 30.0% | |
| GTATGATCGGATGATTAATT+AGG | - | chr3_2:88722907-88722926 | Msa0435540:intron | 30.0% | |
| ! | TTTAGTTTCTTCCAAGTCAT+AGG | - | chr3_2:88722980-88722999 | Msa0435540:intron | 30.0% |
| ACTGCTAACAACAAATACTT+CGG | + | chr3_2:88723110-88723129 | None:intergenic | 30.0% | |
| AATACAAGTTACTAGCAGTA+AGG | - | chr3_2:88723171-88723190 | Msa0435540:CDS | 30.0% | |
| TTGAAATACTTCTATGTGAC+TGG | - | chr3_2:88723283-88723302 | Msa0435540:intron | 30.0% | |
| TATTACCTGAACCTAAGAAA+GGG | + | chr3_2:88723521-88723540 | None:intergenic | 30.0% | |
| !! | CAGAGCATTAATTTGCTAAA+TGG | + | chr3_2:88723622-88723641 | None:intergenic | 30.0% |
| AAGGGTAAGAATATCTTCTT+TGG | + | chr3_2:88723978-88723997 | None:intergenic | 30.0% | |
| ! | TTCAAGAGGTACAGATTTAT+CGG | + | chr3_2:88724294-88724313 | None:intergenic | 30.0% |
| !! | TTTGTATTTTTGCAGGTTGA+TGG | - | chr3_2:88724746-88724765 | Msa0435540:CDS | 30.0% |
| AGAAGAAGAAGAAGAAGAAG+CGG | + | chr3_2:88720923-88720942 | None:intergenic | 35.0% | |
| ! | TCTTCTTCTTCTGTTAGCTT+TGG | - | chr3_2:88720931-88720950 | Msa0435540:three_prime_UTR | 35.0% |
| TTCTCTTCTTCTTAAAGGGA+AGG | + | chr3_2:88720985-88721004 | None:intergenic | 35.0% | |
| ! | CTATAGTGTTGAATTTGAGG+GGG | + | chr3_2:88721086-88721105 | None:intergenic | 35.0% |
| ! | GCTATAGTGTTGAATTTGAG+GGG | + | chr3_2:88721087-88721106 | None:intergenic | 35.0% |
| AGAAGGAAGAAGAAGACTTA+CGG | + | chr3_2:88721291-88721310 | None:intergenic | 35.0% | |
| ATTTCACACACAAGATCGAT+CGG | - | chr3_2:88721348-88721367 | Msa0435540:CDS | 35.0% | |
| AGAGATCTCTTCTTCTTTCA+TGG | - | chr3_2:88721474-88721493 | Msa0435540:CDS | 35.0% | |
| GAGATCTCTTCTTCTTTCAT+GGG | - | chr3_2:88721475-88721494 | Msa0435540:CDS | 35.0% | |
| !! | GTTATATGGATTAGTCTCTG+CGG | - | chr3_2:88721527-88721546 | Msa0435540:intron | 35.0% |
| ! | CAGTTCTAACAACTAACAAG+CGG | + | chr3_2:88721599-88721618 | None:intergenic | 35.0% |
| GCGACAATGTTACAATTTGT+TGG | - | chr3_2:88721691-88721710 | Msa0435540:CDS | 35.0% | |
| ! | GCAAGCATTTAAAGTATGAG+CGG | + | chr3_2:88721890-88721909 | None:intergenic | 35.0% |
| TTATGCTTTCCTCTTTGGTT+GGG | + | chr3_2:88722048-88722067 | None:intergenic | 35.0% | |
| ATTATGCTTTCCTCTTTGGT+TGG | + | chr3_2:88722049-88722068 | None:intergenic | 35.0% | |
| ! | AACCAAAGAGGAAAGCATAA+TGG | - | chr3_2:88722048-88722067 | Msa0435540:intron | 35.0% |
| TACCATTATGCTTTCCTCTT+TGG | + | chr3_2:88722053-88722072 | None:intergenic | 35.0% | |
| GCCAATCAGATTTCAAATAC+AGG | - | chr3_2:88722102-88722121 | Msa0435540:intron | 35.0% | |
| AATCGTTATGACAGTTCCTT+AGG | - | chr3_2:88722248-88722267 | Msa0435540:CDS | 35.0% | |
| GTTAAAAGATCACTTGAGTG+TGG | + | chr3_2:88722279-88722298 | None:intergenic | 35.0% | |
| TTACATCATGTACTGTTTGC+AGG | - | chr3_2:88722338-88722357 | Msa0435540:intron | 35.0% | |
| !!! | CAGCAGTTTTATTTAGGTCA+AGG | + | chr3_2:88722415-88722434 | None:intergenic | 35.0% |
| ! | TTTTACGCATCTGGTATGAT+CGG | - | chr3_2:88722894-88722913 | Msa0435540:intron | 35.0% |
| TGTTGTTAGCAGTACAGTTA+AGG | - | chr3_2:88723117-88723136 | Msa0435540:intron | 35.0% | |
| ! | CATTATTTCTTGAAGCCGAA+AGG | - | chr3_2:88723215-88723234 | Msa0435540:intron | 35.0% |
| GAAATATACGCAATCAGTCT+TGG | - | chr3_2:88723485-88723504 | Msa0435540:intron | 35.0% | |
| ! | GTTCCAATTTTCCCTTTCTT+AGG | - | chr3_2:88723507-88723526 | Msa0435540:intron | 35.0% |
| GAACCTAAGAAAGGGAAAAT+TGG | + | chr3_2:88723513-88723532 | None:intergenic | 35.0% | |
| ! | ATTTTCCCTTTCTTAGGTTC+AGG | - | chr3_2:88723513-88723532 | Msa0435540:intron | 35.0% |
| CTATTACCTGAACCTAAGAA+AGG | + | chr3_2:88723522-88723541 | None:intergenic | 35.0% | |
| !! | ATTTGTGGGTAAAGAGTGTT+TGG | + | chr3_2:88723554-88723573 | None:intergenic | 35.0% |
| CAAATTAATGCTCTGCAGTA+TGG | - | chr3_2:88723627-88723646 | Msa0435540:intron | 35.0% | |
| TCTGCAGTATGGAAATTGTT+TGG | - | chr3_2:88723638-88723657 | Msa0435540:intron | 35.0% | |
| ACAAACTTGACCAGTGTATA+AGG | - | chr3_2:88723721-88723740 | Msa0435540:CDS | 35.0% | |
| GTCAATTCTCAGTGAAAGAA+AGG | - | chr3_2:88723814-88723833 | Msa0435540:intron | 35.0% | |
| AAAGGAGCTTATAAGAAACC+TGG | - | chr3_2:88723832-88723851 | Msa0435540:intron | 35.0% | |
| ! | TCCAAAAGCTAGTTTCATTG+AGG | - | chr3_2:88724120-88724139 | Msa0435540:intron | 35.0% |
| !!! | ACCTCAATGAAACTAGCTTT+TGG | + | chr3_2:88724124-88724143 | None:intergenic | 35.0% |
| ! | ATGATTGTTAGAAGTGCAAC+TGG | - | chr3_2:88724267-88724286 | Msa0435540:intron | 35.0% |
| GGTTAGAGACACATGAAATA+CGG | + | chr3_2:88724419-88724438 | None:intergenic | 35.0% | |
| CAAAGTTAGAAGATCCATCA+CGG | - | chr3_2:88724500-88724519 | Msa0435540:intron | 35.0% | |
| GTGGGATTATTAGAAAACCA+AGG | - | chr3_2:88724550-88724569 | Msa0435540:intron | 35.0% | |
| !! | AAGGGTTTTTCTGAAAACCT+TGG | + | chr3_2:88724570-88724589 | None:intergenic | 35.0% |
| ! | GTTTTCAGAAAAACCCTTCT+GGG | - | chr3_2:88724572-88724591 | Msa0435540:intron | 35.0% |
| ACAAATTACTCCTACGGATT+TGG | - | chr3_2:88724633-88724652 | Msa0435540:intron | 35.0% | |
| ATTCATACATCCAAATCCGT+AGG | + | chr3_2:88724646-88724665 | None:intergenic | 35.0% | |
| TCTTGGGTTTATCTCTATTG+AGG | - | chr3_2:88724863-88724882 | Msa0435540:five_prime_UTR | 35.0% | |
| TATAAACCAGGCCTTCAAAT+TGG | + | chr3_2:88724900-88724919 | None:intergenic | 35.0% | |
| !! | AGGAAAGAGCATTATAAACC+AGG | + | chr3_2:88724912-88724931 | None:intergenic | 35.0% |
| ATATCGCATTTGCTTAGAGT+AGG | - | chr3_2:88725003-88725022 | Msa0435540:five_prime_UTR | 35.0% | |
| ACTGCTACTACTACTAGTGT+TGG | - | chr3_2:88721162-88721181 | Msa0435540:exon | 40.0% | |
| CTGCTACTACTACTAGTGTT+GGG | - | chr3_2:88721163-88721182 | Msa0435540:exon | 40.0% | |
| GAAGGAAGAAGAAGACTTAC+GGG | + | chr3_2:88721290-88721309 | None:intergenic | 40.0% | |
| ! | TTAACAGTGTTGCTCTGACT+CGG | + | chr3_2:88722000-88722019 | None:intergenic | 40.0% |
| TTGGGTTCAGTTTGAAGAAG+TGG | + | chr3_2:88722030-88722049 | None:intergenic | 40.0% | |
| CTGAATTCAGAGAGTCTGAT+AGG | + | chr3_2:88722220-88722239 | None:intergenic | 40.0% | |
| ACTGTCATAACGATTGACTG+TGG | + | chr3_2:88722243-88722262 | None:intergenic | 40.0% | |
| CAGTTTGATCAATGAGGCTA+AGG | - | chr3_2:88722382-88722401 | Msa0435540:intron | 40.0% | |
| TTGATCAATGAGGCTAAGGA+TGG | - | chr3_2:88722386-88722405 | Msa0435540:intron | 40.0% | |
| AGTAGGTGAAGCTCAAAATC+AGG | + | chr3_2:88722501-88722520 | None:intergenic | 40.0% | |
| CTTCAAAGAACCATATACGG+TGG | - | chr3_2:88722661-88722680 | Msa0435540:intron | 40.0% | |
| !! | ATATGATGGGCCTTATTCAC+AGG | - | chr3_2:88722761-88722780 | Msa0435540:intron | 40.0% |
| !! | TATGATGGGCCTTATTCACA+GGG | - | chr3_2:88722762-88722781 | Msa0435540:intron | 40.0% |
| ATGCGTAAAAGCAGGAAATG+TGG | + | chr3_2:88722884-88722903 | None:intergenic | 40.0% | |
| !! | ATTTCCTGCTTTTACGCATC+TGG | - | chr3_2:88722885-88722904 | Msa0435540:intron | 40.0% |
| TCTTCCAAGTCATAGGTTTC+AGG | - | chr3_2:88722987-88723006 | Msa0435540:intron | 40.0% | |
| GATTCCTGAAACCTATGACT+TGG | + | chr3_2:88722994-88723013 | None:intergenic | 40.0% | |
| CAGGAATCTTATTGTCTTCG+TGG | - | chr3_2:88723006-88723025 | Msa0435540:intron | 40.0% | |
| TCCTAGGTGCAATGTCTAAT+CGG | + | chr3_2:88723049-88723068 | None:intergenic | 40.0% | |
| TATACAAACCGGAGATTCCT+AGG | + | chr3_2:88723065-88723084 | None:intergenic | 40.0% | |
| ATGTCTTCAGTAGCTCAAGT+TGG | + | chr3_2:88723198-88723217 | None:intergenic | 40.0% | |
| ! | TGAAGCCGAAAGGAAACTTT+TGG | - | chr3_2:88723225-88723244 | Msa0435540:intron | 40.0% |
| ! | GAAGCCGAAAGGAAACTTTT+GGG | - | chr3_2:88723226-88723245 | Msa0435540:intron | 40.0% |
| TCAGCCCAAAAGTTTCCTTT+CGG | + | chr3_2:88723233-88723252 | None:intergenic | 40.0% | |
| !! | GGTAAAGAGTGTTTGGCTAA+AGG | + | chr3_2:88723547-88723566 | None:intergenic | 40.0% |
| CTGATAATTTGGTCCATTGC+AGG | - | chr3_2:88723668-88723687 | Msa0435540:intron | 40.0% | |
| CTATCAACTTCATCCTGCAA+TGG | + | chr3_2:88723684-88723703 | None:intergenic | 40.0% | |
| !! | AGTTGATAGCTTATATGCCG+AGG | - | chr3_2:88723695-88723714 | Msa0435540:intron | 40.0% |
| CTGGTCAAGTTTGTATTCCT+CGG | + | chr3_2:88723715-88723734 | None:intergenic | 40.0% | |
| CTTATAAGAAACCTGGAGGA+AGG | - | chr3_2:88723839-88723858 | Msa0435540:intron | 40.0% | |
| TGTCAGTAGTTCTTACTTCC+CGG | + | chr3_2:88723873-88723892 | None:intergenic | 40.0% | |
| ATACTTGGAGAAAAAGGACC+TGG | + | chr3_2:88724009-88724028 | None:intergenic | 40.0% | |
| GAGGTGGGATTCAACTTATA+TGG | - | chr3_2:88724157-88724176 | Msa0435540:intron | 40.0% | |
| CACTCAAATGAGCAGGAATT+AGG | - | chr3_2:88724222-88724241 | Msa0435540:intron | 40.0% | |
| CAATCATTCTGTACTGCCTT+TGG | + | chr3_2:88724254-88724273 | None:intergenic | 40.0% | |
| !! | CAGAAGAGAAGTACTTCAAG+AGG | + | chr3_2:88724308-88724327 | None:intergenic | 40.0% |
| ATCTTCTAACTTTGCCTGCT+TGG | + | chr3_2:88724494-88724513 | None:intergenic | 40.0% | |
| ! | GGTTTTCAGAAAAACCCTTC+TGG | - | chr3_2:88724571-88724590 | Msa0435540:intron | 40.0% |
| ! | TTTAAGTTCGCTTGACTCAG+AGG | - | chr3_2:88724597-88724616 | Msa0435540:intron | 40.0% |
| !! | TGCAGGTTGATGGTGATTAT+TGG | - | chr3_2:88724756-88724775 | Msa0435540:CDS | 40.0% |
| TTTCAATCAGATCCCCAAGT+TGG | - | chr3_2:88724779-88724798 | Msa0435540:exon | 40.0% | |
| AATTCTGTTAGGCCAACTTG+GGG | + | chr3_2:88724794-88724813 | None:intergenic | 40.0% | |
| CAATTCTGTTAGGCCAACTT+GGG | + | chr3_2:88724795-88724814 | None:intergenic | 40.0% | |
| ACAATTCTGTTAGGCCAACT+TGG | + | chr3_2:88724796-88724815 | None:intergenic | 40.0% | |
| ! | AAGTTGGCCTAACAGAATTG+TGG | - | chr3_2:88724795-88724814 | Msa0435540:five_prime_UTR | 40.0% |
| ! | AGTTGGCCTAACAGAATTGT+GGG | - | chr3_2:88724796-88724815 | Msa0435540:five_prime_UTR | 40.0% |
| AATTGACCAATTTGAAGGCC+TGG | - | chr3_2:88724891-88724910 | Msa0435540:five_prime_UTR | 40.0% | |
| GAAGAAGAAGAAGAAGCGGT+GGG | + | chr3_2:88720919-88720938 | None:intergenic | 45.0% | |
| AGAAGAAGAAGAAGAAGCGG+TGG | + | chr3_2:88720920-88720939 | None:intergenic | 45.0% | |
| ATCCTATTACGTAGGTAGCC+AGG | + | chr3_2:88721039-88721058 | None:intergenic | 45.0% | |
| !! | TGAGTGAGTGAGGGTTTTAG+CGG | + | chr3_2:88721120-88721139 | None:intergenic | 45.0% |
| TAGAGTGAGTGAGTGAGTGA+GGG | + | chr3_2:88721129-88721148 | None:intergenic | 45.0% | |
| ATAGAGTGAGTGAGTGAGTG+AGG | + | chr3_2:88721130-88721149 | None:intergenic | 45.0% | |
| TGAGGAATTTGATCGTCGGT+TGG | + | chr3_2:88721221-88721240 | None:intergenic | 45.0% | |
| CATAGGTGCATTCTTAGGGT+CGG | + | chr3_2:88721508-88721527 | None:intergenic | 45.0% | |
| !! | TATGGATTAGTCTCTGCGGT+TGG | - | chr3_2:88721531-88721550 | Msa0435540:intron | 45.0% |
| !! | ATGGATTAGTCTCTGCGGTT+GGG | - | chr3_2:88721532-88721551 | Msa0435540:intron | 45.0% |
| !! | GTTGGGCGCTGAATTTAAAG+TGG | - | chr3_2:88721549-88721568 | Msa0435540:intron | 45.0% |
| GGTTCAGTTTGAAGAAGTGG+AGG | + | chr3_2:88722027-88722046 | None:intergenic | 45.0% | |
| CAAACTGAACCCAACCAAAG+AGG | - | chr3_2:88722036-88722055 | Msa0435540:intron | 45.0% | |
| CTTGAGTGTGGACATACCTA+AGG | + | chr3_2:88722267-88722286 | None:intergenic | 45.0% | |
| !! | ATGATGGGCCTTATTCACAG+GGG | - | chr3_2:88722763-88722782 | Msa0435540:intron | 45.0% |
| CATCACATCCCCTGTGAATA+AGG | + | chr3_2:88722774-88722793 | None:intergenic | 45.0% | |
| CTTATTCACAGGGGATGTGA+TGG | - | chr3_2:88722772-88722791 | Msa0435540:intron | 45.0% | |
| CATACCAGATGCGTAAAAGC+AGG | + | chr3_2:88722892-88722911 | None:intergenic | 45.0% | |
| ACCGATTAGACATTGCACCT+AGG | - | chr3_2:88723045-88723064 | Msa0435540:intron | 45.0% | |
| ACATTGCACCTAGGAATCTC+CGG | - | chr3_2:88723054-88723073 | Msa0435540:intron | 45.0% | |
| ACCAGTGTATAAGGTTCGCT+AGG | - | chr3_2:88723730-88723749 | Msa0435540:CDS | 45.0% | |
| ACCTAGCGAACCTTATACAC+TGG | + | chr3_2:88723734-88723753 | None:intergenic | 45.0% | |
| GGAGCTTATAAGAAACCTGG+AGG | - | chr3_2:88723835-88723854 | Msa0435540:intron | 45.0% | |
| AGAAAAAGGACCTGGAAGCA+TGG | + | chr3_2:88724001-88724020 | None:intergenic | 45.0% | |
| AAGTTGAATCCCACCTCATC+AGG | + | chr3_2:88724154-88724173 | None:intergenic | 45.0% | |
| GACTTCTCACTCAAATGAGC+AGG | - | chr3_2:88724215-88724234 | Msa0435540:intron | 45.0% | |
| AGGAATTAGGCTTCCACCAA+AGG | - | chr3_2:88724235-88724254 | Msa0435540:intron | 45.0% | |
| TCATTCTGTACTGCCTTTGG+TGG | + | chr3_2:88724251-88724270 | None:intergenic | 45.0% | |
| AAGCACGACCACAAGTTTGA+GGG | - | chr3_2:88724460-88724479 | Msa0435540:intron | 45.0% | |
| GCGAACTTAAACTCCCAGAA+GGG | + | chr3_2:88724588-88724607 | None:intergenic | 45.0% | |
| AGCGAACTTAAACTCCCAGA+AGG | + | chr3_2:88724589-88724608 | None:intergenic | 45.0% | |
| ! | GTTGGCCTAACAGAATTGTG+GGG | - | chr3_2:88724797-88724816 | Msa0435540:five_prime_UTR | 45.0% |
| TTGGCCTAACAGAATTGTGG+GGG | - | chr3_2:88724798-88724817 | Msa0435540:five_prime_UTR | 45.0% | |
| TCTACCCCCACAATTCTGTT+AGG | + | chr3_2:88724805-88724824 | None:intergenic | 45.0% | |
| TGCACTTGTGCTGAACAAAG+AGG | + | chr3_2:88724932-88724951 | None:intergenic | 45.0% | |
| TTGTTCAGCACAAGTGCAGT+TGG | - | chr3_2:88724934-88724953 | Msa0435540:five_prime_UTR | 45.0% | |
| ! | GTAGGCATCGCTGACATATA+TGG | - | chr3_2:88725021-88725040 | Msa0435540:five_prime_UTR | 45.0% |
| !! | TAAATAGTATATAAAAAATA+TGG | + | chr3_2:88722964-88722983 | None:intergenic | 5.0% |
| !! | TAATAAAGAAAAAAAAATTA+GGG | + | chr3_2:88724341-88724360 | None:intergenic | 5.0% |
| TGCCTGGCTACCTACGTAAT+AGG | - | chr3_2:88721034-88721053 | Msa0435540:three_prime_UTR | 50.0% | |
| GCTCGATGGTTCGTATTAGC+AGG | - | chr3_2:88722475-88722494 | Msa0435540:intron | 50.0% | |
| ACTTGATGCTCCAGTTCTCG+TGG | + | chr3_2:88722805-88722824 | None:intergenic | 50.0% | |
| CAGTACAGTTAAGGCTGCTG+AGG | - | chr3_2:88723126-88723145 | Msa0435540:intron | 50.0% | |
| GCTGCTGAGGATGATAACAG+TGG | - | chr3_2:88723139-88723158 | Msa0435540:intron | 50.0% | |
| CTGGAGGAAGGTGAAAACAC+CGG | - | chr3_2:88723851-88723870 | Msa0435540:intron | 50.0% | |
| TGGAGGAAGGTGAAAACACC+GGG | - | chr3_2:88723852-88723871 | Msa0435540:intron | 50.0% | |
| TCTTACCCTTCCATGCTTCC+AGG | - | chr3_2:88723988-88724007 | Msa0435540:CDS | 50.0% | |
| ! | AAGGACCTGGAAGCATGGAA+GGG | + | chr3_2:88723996-88724015 | None:intergenic | 50.0% |
| ! | AAAGGACCTGGAAGCATGGA+AGG | + | chr3_2:88723997-88724016 | None:intergenic | 50.0% |
| AATCCCACCTCATCAGGATC+GGG | + | chr3_2:88724148-88724167 | None:intergenic | 50.0% | |
| GAATCCCACCTCATCAGGAT+CGG | + | chr3_2:88724149-88724168 | None:intergenic | 50.0% | |
| CAAGCACGACCACAAGTTTG+AGG | - | chr3_2:88724459-88724478 | Msa0435540:intron | 50.0% | |
| CACTCACACCCTCAAACTTG+TGG | + | chr3_2:88724471-88724490 | None:intergenic | 50.0% | |
| GATCCATCACGGAGTAGCAA+CGG | - | chr3_2:88724511-88724530 | Msa0435540:intron | 50.0% | |
| ! | TCGCTTGACTCAGAGGCTTT+TGG | - | chr3_2:88724604-88724623 | Msa0435540:intron | 50.0% |
| !! | TGAGGGTTTTAGCGGCAGGA+AGG | + | chr3_2:88721112-88721131 | None:intergenic | 55.0% |
| !! | TGAGTGAGGGTTTTAGCGGC+AGG | + | chr3_2:88721116-88721135 | None:intergenic | 55.0% |
| TGGACTTGAGCCACGAGAAC+TGG | - | chr3_2:88722792-88722811 | Msa0435540:intron | 55.0% | |
| ! | CGGTGTTTTCACCTTCCTCC+AGG | + | chr3_2:88723853-88723872 | None:intergenic | 55.0% |
| ATCCCACCTCATCAGGATCG+GGG | + | chr3_2:88724147-88724166 | None:intergenic | 55.0% | |
| GAGTAGCAACGGCTGCAGAA+TGG | - | chr3_2:88724522-88724541 | Msa0435540:intron | 55.0% | |
| TAGCAACGGCTGCAGAATGG+AGG | - | chr3_2:88724525-88724544 | Msa0435540:intron | 55.0% | |
| AGCAACGGCTGCAGAATGGA+GGG | - | chr3_2:88724526-88724545 | Msa0435540:intron | 55.0% | |
| TGAGGTCCCCGATCCTGATG+AGG | - | chr3_2:88724138-88724157 | Msa0435540:intron | 60.0% | |
| GTCCCCGATCCTGATGAGGT+GGG | - | chr3_2:88724142-88724161 | Msa0435540:intron | 60.0% | |
| ! | TGAGGGTGTGAGTGCCAAGC+AGG | - | chr3_2:88724477-88724496 | Msa0435540:intron | 60.0% |
| CAGCCGTTGCTACTCCGTGA+TGG | + | chr3_2:88724517-88724536 | None:intergenic | 60.0% | |
| ! | GGCTGCAGAATGGAGGGTGT+GGG | - | chr3_2:88724532-88724551 | Msa0435540:intron | 60.0% |
| GGTCCCCGATCCTGATGAGG+TGG | - | chr3_2:88724141-88724160 | Msa0435540:intron | 65.0% | |
| CGGCTGCAGAATGGAGGGTG+TGG | - | chr3_2:88724531-88724550 | Msa0435540:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88720904 | 88725085 | 88720904 | ID=Msa0435540;Name=Msa0435540 |
| chr3_2 | mRNA | 88720904 | 88725085 | 88720904 | ID=Msa0435540-mRNA-1;Parent=Msa0435540;Name=Msa0435540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=305|1|1|1|1|1|13|262|367 |
| chr3_2 | exon | 88720904 | 88721228 | 88720904 | ID=Msa0435540-mRNA-1:exon:26209;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88721332 | 88721530 | 88721332 | ID=Msa0435540-mRNA-1:exon:26208;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88721676 | 88721752 | 88721676 | ID=Msa0435540-mRNA-1:exon:26207;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88721830 | 88721895 | 88721830 | ID=Msa0435540-mRNA-1:exon:26206;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88721980 | 88722028 | 88721980 | ID=Msa0435540-mRNA-1:exon:26205;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88722113 | 88722163 | 88722113 | ID=Msa0435540-mRNA-1:exon:26204;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88722247 | 88722299 | 88722247 | ID=Msa0435540-mRNA-1:exon:26203;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88723152 | 88723206 | 88723152 | ID=Msa0435540-mRNA-1:exon:26202;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88723304 | 88723392 | 88723304 | ID=Msa0435540-mRNA-1:exon:26201;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88723544 | 88723629 | 88723544 | ID=Msa0435540-mRNA-1:exon:26200;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88723720 | 88723764 | 88723720 | ID=Msa0435540-mRNA-1:exon:26199;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88723866 | 88724055 | 88723866 | ID=Msa0435540-mRNA-1:exon:26198;Parent=Msa0435540-mRNA-1 |
| chr3_2 | exon | 88724700 | 88725085 | 88724700 | ID=Msa0435540-mRNA-1:exon:26197;Parent=Msa0435540-mRNA-1 |
| chr3_2 | five_prime_UTR | 88724781 | 88725085 | 88724781 | ID=Msa0435540-mRNA-1:five_prime_utr;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88724700 | 88724780 | 88724700 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88723866 | 88724055 | 88723866 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88723720 | 88723764 | 88723720 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88723544 | 88723629 | 88723544 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88723304 | 88723392 | 88723304 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88723152 | 88723206 | 88723152 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88722247 | 88722299 | 88722247 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88722113 | 88722163 | 88722113 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88721980 | 88722028 | 88721980 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88721830 | 88721895 | 88721830 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88721676 | 88721752 | 88721676 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88721332 | 88721530 | 88721332 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | CDS | 88721166 | 88721228 | 88721166 | ID=Msa0435540-mRNA-1:cds;Parent=Msa0435540-mRNA-1 |
| chr3_2 | three_prime_UTR | 88720904 | 88721165 | 88720904 | ID=Msa0435540-mRNA-1:three_prime_utr;Parent=Msa0435540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
