Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387160 | XP_024634048.1 | 96.141 | 596 | 22 | 1 | 1 | 596 | 1 | 595 | 0.0 | 1141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387160 | sp|Q9SZD1|TCX5_ARATH | 40.433 | 554 | 243 | 18 | 13 | 533 | 24 | 523 | 4.15e-111 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387160 | A0A072V2F6 | 91.973 | 598 | 44 | 4 | 1 | 596 | 1 | 596 | 0.0 | 1096 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0387160 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387160 | Msa0581890 | 0.871562 | 6.218509e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387160 | MtrunA17_Chr3g0139951 | 97.000 | 400 | 12 | 0 | 1 | 400 | 1 | 400 | 0.0 | 806 |
| Msa0387160 | MtrunA17_Chr6g0485811 | 45.376 | 465 | 225 | 10 | 125 | 570 | 107 | 561 | 8.73e-117 | 360 |
| Msa0387160 | MtrunA17_Chr8g0390351 | 44.662 | 459 | 228 | 11 | 109 | 549 | 44 | 494 | 4.18e-114 | 352 |
| Msa0387160 | MtrunA17_Chr3g0139941 | 78.462 | 195 | 9 | 2 | 402 | 596 | 1 | 162 | 1.33e-98 | 297 |
| Msa0387160 | MtrunA17_Chr1g0149101 | 44.604 | 139 | 73 | 4 | 148 | 282 | 498 | 636 | 1.17e-28 | 121 |
| Msa0387160 | MtrunA17_Chr5g0394661 | 48.800 | 125 | 60 | 4 | 148 | 269 | 488 | 611 | 4.44e-27 | 116 |
| Msa0387160 | MtrunA17_Chr1g0205031 | 36.719 | 128 | 68 | 5 | 143 | 267 | 409 | 526 | 7.07e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387160 | AT4G29000.1 | 40.433 | 554 | 243 | 18 | 13 | 533 | 24 | 523 | 4.22e-112 | 348 |
| Msa0387160 | AT2G20110.3 | 40.883 | 521 | 247 | 14 | 84 | 590 | 66 | 539 | 1.58e-105 | 329 |
| Msa0387160 | AT2G20110.1 | 41.352 | 503 | 240 | 13 | 84 | 572 | 66 | 527 | 1.01e-104 | 328 |
| Msa0387160 | AT2G20110.2 | 40.588 | 510 | 241 | 13 | 84 | 572 | 66 | 534 | 9.09e-103 | 323 |
| Msa0387160 | AT5G25790.1 | 36.722 | 482 | 248 | 15 | 49 | 524 | 11 | 441 | 1.06e-82 | 267 |
| Msa0387160 | AT5G25790.2 | 35.714 | 504 | 267 | 15 | 49 | 546 | 11 | 463 | 1.90e-82 | 268 |
| Msa0387160 | AT5G25790.3 | 36.515 | 482 | 245 | 16 | 49 | 524 | 11 | 437 | 4.08e-82 | 265 |
| Msa0387160 | AT3G16160.1 | 44.737 | 152 | 80 | 2 | 116 | 266 | 34 | 182 | 3.13e-32 | 128 |
| Msa0387160 | AT3G22760.2 | 41.401 | 157 | 87 | 3 | 126 | 280 | 186 | 339 | 1.51e-28 | 119 |
| Msa0387160 | AT3G22760.1 | 41.401 | 157 | 87 | 3 | 126 | 280 | 309 | 462 | 2.27e-28 | 120 |
| Msa0387160 | AT4G14770.1 | 46.774 | 124 | 64 | 2 | 148 | 269 | 375 | 498 | 4.76e-28 | 119 |
| Msa0387160 | AT4G14770.2 | 46.774 | 124 | 64 | 2 | 148 | 269 | 355 | 478 | 7.12e-28 | 119 |
| Msa0387160 | AT4G14770.3 | 46.774 | 124 | 64 | 2 | 148 | 269 | 356 | 479 | 7.14e-28 | 119 |
| Msa0387160 | AT3G22780.1 | 42.029 | 138 | 78 | 2 | 148 | 283 | 401 | 538 | 1.04e-27 | 119 |
| Msa0387160 | AT3G04850.1 | 45.968 | 124 | 65 | 2 | 148 | 269 | 453 | 576 | 5.44e-27 | 116 |
Find 175 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCAATTTAAGTGTTTC+TGG | 0.101248 | 3_1:-91070486 | None:intergenic |
| GCTAAAGTACTTACAATTTA+AGG | 0.107021 | 3_1:-91068639 | None:intergenic |
| TTCTCTTCTTGGGTGTTATA+TGG | 0.169921 | 3_1:-91069339 | None:intergenic |
| ATTATTATTGGTAGCATTAA+AGG | 0.183098 | 3_1:+91070681 | Msa0387160:CDS |
| CATTCCAATTGCCTCCTTTC+GGG | 0.215507 | 3_1:-91068833 | None:intergenic |
| ATACGAGTTTAAACATTAAA+TGG | 0.240463 | 3_1:+91072932 | Msa0387160:three_prime_UTR |
| ATTTGTCTTTGCAGCTTCTT+TGG | 0.243681 | 3_1:-91070008 | None:intergenic |
| GCAACTAATGCTGCCATTAA+TGG | 0.244194 | 3_1:+91069283 | Msa0387160:CDS |
| TCAAAATAAAGCAGGGTTAA+AGG | 0.248253 | 3_1:+91068567 | Msa0387160:CDS |
| CATGCAGAGAATGGAATTTC+CGG | 0.278353 | 3_1:-91066743 | None:intergenic |
| TACTTACAATTTAAGGCATT+TGG | 0.284828 | 3_1:-91068632 | None:intergenic |
| TCTCTTCTTGGGTGTTATAT+GGG | 0.286069 | 3_1:-91069338 | None:intergenic |
| CTTGTGTATCTTCAAGTTGA+TGG | 0.295690 | 3_1:+91072904 | Msa0387160:three_prime_UTR |
| ACAAAATATTTGAAAGAGAT+TGG | 0.297176 | 3_1:-91072607 | None:intergenic |
| AAAATCACATACCTGAATTT+AGG | 0.297536 | 3_1:-91069831 | None:intergenic |
| CTTGGTGAACTGATTATTAT+TGG | 0.298905 | 3_1:+91070669 | Msa0387160:CDS |
| TCATTCCAATTGCCTCCTTT+CGG | 0.299863 | 3_1:-91068834 | None:intergenic |
| AAGTCCAACTGCTCCATTAA+TGG | 0.310344 | 3_1:-91069296 | None:intergenic |
| TTGATATTGACATTCATAAT+AGG | 0.314713 | 3_1:+91070454 | Msa0387160:CDS |
| TAGTGACCTTACTTGTATAT+TGG | 0.319714 | 3_1:+91072507 | Msa0387160:three_prime_UTR |
| GTGTCTGAAATTCAATTAAT+AGG | 0.329611 | 3_1:+91069082 | Msa0387160:CDS |
| GGCTTATCCTGACCAAGTTC+AGG | 0.337443 | 3_1:+91070640 | Msa0387160:CDS |
| TCGGAAATTTGCGCGGCAAT+TGG | 0.338947 | 3_1:+91067036 | Msa0387160:CDS |
| TTGACTCAACTGCATGTAAC+TGG | 0.341419 | 3_1:+91072647 | Msa0387160:three_prime_UTR |
| TCCTCCGGCGCAAATGCATT+TGG | 0.349311 | 3_1:+91067165 | Msa0387160:CDS |
| TCAGTCCTGTCAAAAGAAAA+AGG | 0.352955 | 3_1:-91072462 | None:intergenic |
| AATAGAAGCTTCATATTTCT+CGG | 0.353823 | 3_1:-91070343 | None:intergenic |
| CTACTAACCATAGAAACTTC+TGG | 0.357925 | 3_1:-91068913 | None:intergenic |
| GCCTTACAGCGGCTATATTT+CGG | 0.369174 | 3_1:-91072808 | None:intergenic |
| TTTGCATGATTCTCCGAAAC+AGG | 0.382385 | 3_1:-91070411 | None:intergenic |
| ACCAAGTTCAGGGATGTTCT+TGG | 0.382968 | 3_1:+91070651 | Msa0387160:CDS |
| AACCTCTTCACCGGAAGCTT+TGG | 0.384541 | 3_1:-91067337 | None:intergenic |
| AGATGTTGCCAAGCCTGTTT+CGG | 0.392240 | 3_1:+91070398 | Msa0387160:CDS |
| TTCGGTAATGGTTCTGCAAA+TGG | 0.394963 | 3_1:+91070531 | Msa0387160:CDS |
| AACACTCACAATACTTCTTA+AGG | 0.401328 | 3_1:-91069141 | None:intergenic |
| TTTAAACATTAAATGGTGAT+TGG | 0.402292 | 3_1:+91072939 | Msa0387160:three_prime_UTR |
| TTAATAGGAAGGCACAATAA+AGG | 0.404131 | 3_1:+91069097 | Msa0387160:CDS |
| TAATTTCAAGACCTAAATTC+AGG | 0.410173 | 3_1:+91069820 | Msa0387160:CDS |
| GCGTCGGTGGCGACAATGTC+AGG | 0.412454 | 3_1:-91067090 | None:intergenic |
| TGTTTCCACGGCCGTCTCAC+TGG | 0.412786 | 3_1:-91067199 | None:intergenic |
| AACAACCGGAAGTGGTAATC+TGG | 0.413771 | 3_1:+91072422 | Msa0387160:exon |
| GGACTTGGACCCTCCATCTC+TGG | 0.418333 | 3_1:+91069313 | Msa0387160:CDS |
| ATTAATGGAGCAGTTGGACT+TGG | 0.419842 | 3_1:+91069298 | Msa0387160:CDS |
| GCTACCTATGCAAGAACTAA+TGG | 0.420530 | 3_1:+91072357 | Msa0387160:CDS |
| TAAATTGATGTGTGATGAAC+AGG | 0.421391 | 3_1:+91070497 | Msa0387160:CDS |
| AGCCACTGGGATGGAGCAAT+TGG | 0.435821 | 3_1:-91072337 | None:intergenic |
| CAAAATATTTGAAAGAGATT+GGG | 0.437425 | 3_1:-91072606 | None:intergenic |
| TCATGTCGGAATTCAACATC+AGG | 0.437658 | 3_1:+91072855 | Msa0387160:three_prime_UTR |
| TTAACTCCAATATACAAGTA+AGG | 0.446671 | 3_1:-91072513 | None:intergenic |
| AACATTAAATGGTGATTGGT+GGG | 0.447498 | 3_1:+91072943 | Msa0387160:three_prime_UTR |
| AGACGAAAACATGCAGAGAA+TGG | 0.447595 | 3_1:-91066752 | None:intergenic |
| GTACTCCACACCAAAGCTTC+CGG | 0.447922 | 3_1:+91067327 | Msa0387160:CDS |
| TACTGTGAGTGCTATGCAGC+TGG | 0.448205 | 3_1:+91068751 | Msa0387160:CDS |
| AAAGGAAGCTGACAGGGATA+AGG | 0.448296 | 3_1:-91069775 | None:intergenic |
| ACATGAGCAGCATCACTTAC+GGG | 0.448758 | 3_1:-91072563 | None:intergenic |
| CACATGAGCAGCATCACTTA+CGG | 0.452805 | 3_1:-91072564 | None:intergenic |
| TGTATATTGGAGTTAAGAAA+AGG | 0.456535 | 3_1:+91072520 | Msa0387160:three_prime_UTR |
| TTGCCTGCGGATTGAACAAC+CGG | 0.458472 | 3_1:+91072408 | Msa0387160:exon |
| TTCAAATTTCCAGAAATGAG+AGG | 0.459036 | 3_1:+91070297 | Msa0387160:intron |
| CATGACTGCTCAACACCAAC+AGG | 0.463692 | 3_1:+91069411 | Msa0387160:CDS |
| GGTTTAAGAAGAAACGTTGA+TGG | 0.467781 | 3_1:+91066982 | Msa0387160:intron |
| ACCAAGAACATCCCTGAACT+TGG | 0.469962 | 3_1:-91070652 | None:intergenic |
| ATACACCAGATTACCACTTC+CGG | 0.470900 | 3_1:-91072427 | None:intergenic |
| TGATAGTGGTGCTGAAACTA+AGG | 0.471033 | 3_1:+91072290 | Msa0387160:CDS |
| CACTGCTGTTTATGCAGAGC+AGG | 0.471249 | 3_1:+91070614 | Msa0387160:CDS |
| CTGTTTATGCAGAGCAGGAA+AGG | 0.476553 | 3_1:+91070619 | Msa0387160:CDS |
| GAAACTTTACCTATGCGTTA+CGG | 0.476869 | 3_1:-91066836 | None:intergenic |
| AAGGAAGCTGACAGGGATAA+GGG | 0.478405 | 3_1:-91069774 | None:intergenic |
| TCACAGCCTCAAAATAAAGC+AGG | 0.479128 | 3_1:+91068559 | Msa0387160:CDS |
| GCTGCCCGAAAGGAGGCAAT+TGG | 0.479529 | 3_1:+91068829 | Msa0387160:CDS |
| GTTCTTGCATAGGTAGCCAC+TGG | 0.479534 | 3_1:-91072351 | None:intergenic |
| GATAAGGGAGATGAAGCTAT+AGG | 0.479560 | 3_1:-91069759 | None:intergenic |
| GAACATCCCTGAACTTGGTC+AGG | 0.480468 | 3_1:-91070647 | None:intergenic |
| CGGTGAATCCACCGTGGGAG+TGG | 0.486136 | 3_1:-91066671 | None:intergenic |
| AAACATTAAATGGTGATTGG+TGG | 0.492778 | 3_1:+91072942 | Msa0387160:three_prime_UTR |
| GATTGAAAATGCGGCATCAC+CGG | 0.492928 | 3_1:-91067265 | None:intergenic |
| GGAGAAGAGCGAAACGACGC+TGG | 0.493971 | 3_1:+91067003 | Msa0387160:CDS |
| CGGAAACAAAGGAAGCTGAC+AGG | 0.494375 | 3_1:-91069782 | None:intergenic |
| TGTTATATGGGTTCCAGAGA+TGG | 0.499612 | 3_1:-91069326 | None:intergenic |
| TGAGGCTGTGATCTAGGGCT+AGG | 0.501431 | 3_1:-91068547 | None:intergenic |
| TCCGAAATATAGCCGCTGTA+AGG | 0.504333 | 3_1:+91072807 | Msa0387160:three_prime_UTR |
| CGACGCTGGATTTAGCTAAT+CGG | 0.509373 | 3_1:+91067017 | Msa0387160:CDS |
| AAAGGATGTCACTGCAAGAA+AGG | 0.510127 | 3_1:+91069115 | Msa0387160:CDS |
| TTGGATTTCGCCGCCGCATG+TGG | 0.510164 | 3_1:+91067055 | Msa0387160:CDS |
| CTTCCGGTTGTTCAATCCGC+AGG | 0.513069 | 3_1:-91072411 | None:intergenic |
| ATCGAAACTAACTGCGGGCG+CGG | 0.513160 | 3_1:-91067289 | None:intergenic |
| TCAAATTTCCAGAAATGAGA+GGG | 0.516415 | 3_1:+91070298 | Msa0387160:intron |
| CTGAAATTCAATTAATAGGA+AGG | 0.519135 | 3_1:+91069086 | Msa0387160:CDS |
| GCTTATCCTGACCAAGTTCA+GGG | 0.520596 | 3_1:+91070641 | Msa0387160:CDS |
| CAAAAGTCTTCCAACTCTGA+TGG | 0.520619 | 3_1:+91070588 | Msa0387160:CDS |
| ATGATTCTCCGAAACAGGCT+TGG | 0.524373 | 3_1:-91070406 | None:intergenic |
| GCGGATTGAACAACCGGAAG+TGG | 0.525965 | 3_1:+91072414 | Msa0387160:exon |
| AAATGCATTTGCGCCGGAGG+AGG | 0.526333 | 3_1:-91067163 | None:intergenic |
| GCTGCCATTAATGGAGCAGT+TGG | 0.529615 | 3_1:+91069292 | Msa0387160:CDS |
| CAGAGCAGAGGACGTTGGCA+TGG | 0.529760 | 3_1:-91069165 | None:intergenic |
| AGTCACCAGTGAGACGGCCG+TGG | 0.538539 | 3_1:+91067194 | Msa0387160:CDS |
| CACCAAAGCTTCCGGTGAAG+AGG | 0.538599 | 3_1:+91067335 | Msa0387160:CDS |
| GAAGCTGCAAAGACAAATGC+AGG | 0.539292 | 3_1:+91070013 | Msa0387160:CDS |
| TGTGACAGTGACTGCGGCGT+CGG | 0.541888 | 3_1:-91067106 | None:intergenic |
| TGTGGTGGTGATTGTTTCCA+CGG | 0.542299 | 3_1:-91067211 | None:intergenic |
| AGCGCTTGAAACCTCTTCAC+CGG | 0.544016 | 3_1:-91067346 | None:intergenic |
| TTCATGTTGAAGGTCTGTGT+TGG | 0.547492 | 3_1:+91069928 | Msa0387160:intron |
| GGAAGCTTTGGTGTGGAGTA+CGG | 0.547715 | 3_1:-91067325 | None:intergenic |
| TCCAAATGCATTTGCGCCGG+AGG | 0.550391 | 3_1:-91067166 | None:intergenic |
| CTCTGCTGCTGCCACTGTGG+TGG | 0.557444 | 3_1:-91067226 | None:intergenic |
| ACCGTCGGATTTGCCTCCTC+CGG | 0.560178 | 3_1:+91067150 | Msa0387160:CDS |
| GGAGGCAAATCCGACGGTGT+CGG | 0.562332 | 3_1:-91067145 | None:intergenic |
| TCTGTGTCCATGCCAAGACT+TGG | 0.562400 | 3_1:-91072693 | None:intergenic |
| ATAGGCAGTGTCGGAAACAA+AGG | 0.562595 | 3_1:-91069793 | None:intergenic |
| TGACGTTGATAACCAAGTCT+TGG | 0.567234 | 3_1:+91072681 | Msa0387160:three_prime_UTR |
| GAACAATGAGGCTGCCCGAA+AGG | 0.567258 | 3_1:+91068819 | Msa0387160:CDS |
| GAATCATCGAAACTAACTGC+GGG | 0.568372 | 3_1:-91067294 | None:intergenic |
| TGCATAGGTAGCCACTGGGA+TGG | 0.569627 | 3_1:-91072346 | None:intergenic |
| ATGTCCATTAGTTCTTGCAT+AGG | 0.570734 | 3_1:-91072361 | None:intergenic |
| GATTTCGCCGCCGCATGTGG+AGG | 0.572850 | 3_1:+91067058 | Msa0387160:CDS |
| AAATGAGAGGGAAAGCTGCT+AGG | 0.574833 | 3_1:+91070310 | Msa0387160:CDS |
| CGGTGTCGGAGGTCGTAGAA+TGG | 0.576418 | 3_1:-91067131 | None:intergenic |
| AGCAGTGTATCCATCAGAGT+TGG | 0.576661 | 3_1:-91070598 | None:intergenic |
| TAGTCTAGTTCAAATCAGAC+AGG | 0.581100 | 3_1:+91069261 | Msa0387160:CDS |
| ACATTAAATGGTGATTGGTG+GGG | 0.582688 | 3_1:+91072944 | Msa0387160:three_prime_UTR |
| TTAAGTGTTTCTGGTGACAG+TGG | 0.589606 | 3_1:-91070477 | None:intergenic |
| GGAGGCAATTGGAATGACAC+TGG | 0.589713 | 3_1:+91068840 | Msa0387160:CDS |
| TGACGGCGGAGAACGATCGC+CGG | 0.591548 | 3_1:-91066705 | None:intergenic |
| GACAGTGACTGCGGCGTCGG+TGG | 0.593114 | 3_1:-91067103 | None:intergenic |
| AAATCCAAATGCATTTGCGC+CGG | 0.594109 | 3_1:-91067169 | None:intergenic |
| CTTCACCGGAAGCTTTGGTG+TGG | 0.594505 | 3_1:-91067332 | None:intergenic |
| AATATACAAGTAAGGTCACT+AGG | 0.594858 | 3_1:-91072505 | None:intergenic |
| CAATGAGGCTGCCCGAAAGG+AGG | 0.594923 | 3_1:+91068822 | Msa0387160:CDS |
| AATTACAATCCGTAACGCAT+AGG | 0.598835 | 3_1:+91066827 | Msa0387160:five_prime_UTR |
| CACAGCCTCAAAATAAAGCA+GGG | 0.602704 | 3_1:+91068560 | Msa0387160:CDS |
| TTGATAACCAAGTCTTGGCA+TGG | 0.605161 | 3_1:+91072686 | Msa0387160:three_prime_UTR |
| GGAAACAAAGGAAGCTGACA+GGG | 0.605542 | 3_1:-91069781 | None:intergenic |
| GGCAAATCCGACGGTGTCGG+AGG | 0.608094 | 3_1:-91067142 | None:intergenic |
| TATATGGGTTCCAGAGATGG+AGG | 0.609649 | 3_1:-91069323 | None:intergenic |
| GCAGCTGGGATCTATTGTGA+TGG | 0.610068 | 3_1:+91068766 | Msa0387160:CDS |
| GAGAACGTCACAGTCTCCGC+CGG | 0.610187 | 3_1:+91067246 | Msa0387160:CDS |
| GGGCGCGGTGATTGAAAATG+CGG | 0.613912 | 3_1:-91067274 | None:intergenic |
| GGTTATCAACGTCACTAGAG+AGG | 0.616925 | 3_1:-91072672 | None:intergenic |
| TCTTTCGTTGAGGTTGCCTG+CGG | 0.618808 | 3_1:+91072395 | Msa0387160:CDS |
| ACTGTGAGTGCTATGCAGCT+GGG | 0.620605 | 3_1:+91068752 | Msa0387160:CDS |
| TGTTGCGGTGAATCCACCGT+GGG | 0.620785 | 3_1:-91066676 | None:intergenic |
| TGATGTGTGATGAACAGGAT+GGG | 0.620967 | 3_1:+91070502 | Msa0387160:CDS |
| ATTCACCGCAACAAACTCTC+CGG | 0.623378 | 3_1:+91066686 | Msa0387160:five_prime_UTR |
| ACATTCATATCATTTCATGT+CGG | 0.629473 | 3_1:+91072841 | Msa0387160:three_prime_UTR |
| ATACTACTGATCTTTCGTTG+AGG | 0.630168 | 3_1:+91072385 | Msa0387160:CDS |
| GTCAATCTTTCTCGTCACAC+CGG | 0.633035 | 3_1:+91066724 | Msa0387160:five_prime_UTR |
| TTCTTGCATAGGTAGCCACT+GGG | 0.635007 | 3_1:-91072350 | None:intergenic |
| ATGTGCATATAGTTAGATGT+TGG | 0.637325 | 3_1:+91072582 | Msa0387160:three_prime_UTR |
| TCATAATAATCTGAACAATG+AGG | 0.638704 | 3_1:+91068807 | Msa0387160:CDS |
| GGTGTGACGAGAAAGATTGA+CGG | 0.639361 | 3_1:-91066722 | None:intergenic |
| TGAAAATGCGGCATCACCGG+CGG | 0.641386 | 3_1:-91067262 | None:intergenic |
| GGCGACAATGTCAGGTACGA+CGG | 0.643457 | 3_1:-91067082 | None:intergenic |
| GGACTGAATTTGGATTGTGA+AGG | 0.643904 | 3_1:+91072478 | Msa0387160:three_prime_UTR |
| CATGTCGGAATTCAACATCA+GGG | 0.644683 | 3_1:+91072856 | Msa0387160:three_prime_UTR |
| GCCGGAGGAGGCAAATCCGA+CGG | 0.645977 | 3_1:-91067151 | None:intergenic |
| TCACTCACAGATCAAACTGT+CGG | 0.650466 | 3_1:+91069388 | Msa0387160:CDS |
| ATATGGGTTCCAGAGATGGA+GGG | 0.670217 | 3_1:-91069322 | None:intergenic |
| TCTACGACCTCCGACACCGT+CGG | 0.672076 | 3_1:+91067135 | Msa0387160:CDS |
| TTGATGTGTGATGAACAGGA+TGG | 0.672796 | 3_1:+91070501 | Msa0387160:CDS |
| GTTCTCTGCTGCTGCCACTG+TGG | 0.675511 | 3_1:-91067229 | None:intergenic |
| TAGCTAATCGGAAATTTGCG+CGG | 0.681451 | 3_1:+91067029 | Msa0387160:CDS |
| TGAGTACATGTGCCTTACAG+CGG | 0.681488 | 3_1:-91072819 | None:intergenic |
| CGACGGACCTCCACATGCGG+CGG | 0.682146 | 3_1:-91067065 | None:intergenic |
| GTACGACGGACCTCCACATG+CGG | 0.684282 | 3_1:-91067068 | None:intergenic |
| GATCGCCGGAGAGTTTGTTG+CGG | 0.684618 | 3_1:-91066691 | None:intergenic |
| AGTGACGCTAACCACTCCCA+CGG | 0.685743 | 3_1:+91066660 | None:intergenic |
| TGCCAATTGCTCCATCCCAG+TGG | 0.687073 | 3_1:+91072335 | Msa0387160:CDS |
| GATAGTGGTGCTGAAACTAA+GGG | 0.691174 | 3_1:+91072291 | Msa0387160:CDS |
| TTGTTGCGGTGAATCCACCG+TGG | 0.703380 | 3_1:-91066677 | None:intergenic |
| GACGCTAACCACTCCCACGG+TGG | 0.704189 | 3_1:+91066663 | None:intergenic |
| TTCTTGAAGCAAGAAATCGA+CGG | 0.709627 | 3_1:-91066806 | None:intergenic |
| TGAATCATCGAAACTAACTG+CGG | 0.719757 | 3_1:-91067295 | None:intergenic |
| GTGACGAGAAAGATTGACGG+CGG | 0.725574 | 3_1:-91066719 | None:intergenic |
| ATGGTTTGTGACAGTGACTG+CGG | 0.730603 | 3_1:-91067112 | None:intergenic |
| GGAAACAATCACCACCACAG+TGG | 0.761756 | 3_1:+91067215 | Msa0387160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAACTAATAAGATT+TGG | - | chr3_1:91068323-91068342 | None:intergenic | 10.0% |
| !!! | ATCTTATTAGTTTTTATAAA+AGG | + | chr3_1:91068324-91068343 | Msa0387160:intron | 10.0% |
| !! | TAAAAGATATTAATTACAAT+CGG | - | chr3_1:91069708-91069727 | None:intergenic | 10.0% |
| !! | ATATGAATATAAAAAAAAAC+CGG | + | chr3_1:91069893-91069912 | Msa0387160:intron | 10.0% |
| !!! | CTCTTTAAAATTTATAATTT+AGG | - | chr3_1:91071705-91071724 | None:intergenic | 10.0% |
| !!! | TGTTGCATTTTATTTATTTT+TGG | + | chr3_1:91067456-91067475 | Msa0387160:intron | 15.0% |
| !!! | ATTTTAGTATTAGAAACATA+AGG | + | chr3_1:91067955-91067974 | Msa0387160:intron | 15.0% |
| !!! | AATGAATTATTGACTTAAAT+TGG | - | chr3_1:91068139-91068158 | None:intergenic | 15.0% |
| !!! | AATGATCAGTATATTTTTAT+TGG | - | chr3_1:91068372-91068391 | None:intergenic | 15.0% |
| !!! | TATTGATAGCTAAATTAATA+GGG | - | chr3_1:91069661-91069680 | None:intergenic | 15.0% |
| !!! | ATATTGATAGCTAAATTAAT+AGG | - | chr3_1:91069662-91069681 | None:intergenic | 15.0% |
| !! | TATTAATTTAATCGTCATTA+AGG | - | chr3_1:91071865-91071884 | None:intergenic | 15.0% |
| !! | GACGATTAAATTAATAAAAA+TGG | + | chr3_1:91071869-91071888 | Msa0387160:intron | 15.0% |
| !!! | AAAAATTAAAGCTACTTTTA+GGG | - | chr3_1:91072072-91072091 | None:intergenic | 15.0% |
| !!! | AAAAAATTAAAGCTACTTTT+AGG | - | chr3_1:91072073-91072092 | None:intergenic | 15.0% |
| !!! | TGGTGTTTTTTTTTTTTTTG+TGG | - | chr3_1:91067597-91067616 | None:intergenic | 20.0% |
| !!! | CAAAGTTCTATTTTTAAACA+TGG | - | chr3_1:91068195-91068214 | None:intergenic | 20.0% |
| !!! | TTTGTTAATGATTGCATTTT+TGG | + | chr3_1:91068255-91068274 | Msa0387160:intron | 20.0% |
| !!! | TTGTTAATGATTGCATTTTT+GGG | + | chr3_1:91068256-91068275 | Msa0387160:intron | 20.0% |
| !!! | ATATTTTTATTGGCAAGTTT+AGG | - | chr3_1:91068362-91068381 | None:intergenic | 20.0% |
| !!! | CTGTCCATTTATATTTTATA+CGG | + | chr3_1:91068396-91068415 | Msa0387160:intron | 20.0% |
| !! | AAATCAATGTGAAACTAATA+AGG | + | chr3_1:91069539-91069558 | Msa0387160:intron | 20.0% |
| !!! | AGGTCTTGAAATTATTTTAT+AGG | - | chr3_1:91069814-91069833 | None:intergenic | 20.0% |
| !!! | GTGATTTTTTTTCAATCATT+AGG | + | chr3_1:91069846-91069865 | Msa0387160:intron | 20.0% |
| !! | ACATGAAATATTGTTAATTC+CGG | - | chr3_1:91069915-91069934 | None:intergenic | 20.0% |
| !! | TTAACAATATTTCATGTTGA+AGG | + | chr3_1:91069918-91069937 | Msa0387160:intron | 20.0% |
| !! | TTGATATTGACATTCATAAT+AGG | + | chr3_1:91070454-91070473 | Msa0387160:CDS | 20.0% |
| !!! | ATTATTATTGGTAGCATTAA+AGG | + | chr3_1:91070681-91070700 | Msa0387160:CDS | 20.0% |
| !! | TGAAAAATACTTGATTCAAA+TGG | + | chr3_1:91070840-91070859 | Msa0387160:intron | 20.0% |
| !! | GAAAAATACTTGATTCAAAT+GGG | + | chr3_1:91070841-91070860 | Msa0387160:intron | 20.0% |
| !! | ATAGATTTCTTGCTTTATAT+CGG | + | chr3_1:91070901-91070920 | Msa0387160:intron | 20.0% |
| !!! | TTTTGATATCGATAATTTTG+AGG | - | chr3_1:91071359-91071378 | None:intergenic | 20.0% |
| !! | TCAAAAACAAAGCAAAAAAA+TGG | - | chr3_1:91071547-91071566 | None:intergenic | 20.0% |
| !! | TGAGGAAATAAAAAAAATTC+AGG | - | chr3_1:91071991-91072010 | None:intergenic | 20.0% |
| !! | TATAGTATCAATCAAACATA+TGG | - | chr3_1:91072026-91072045 | None:intergenic | 20.0% |
| !! | TTCTTAATATAGAAGTTTGA+TGG | - | chr3_1:91072154-91072173 | None:intergenic | 20.0% |
| !! | CAAAATATTTGAAAGAGATT+GGG | - | chr3_1:91072609-91072628 | None:intergenic | 20.0% |
| !! | ACAAAATATTTGAAAGAGAT+TGG | - | chr3_1:91072610-91072629 | None:intergenic | 20.0% |
| !! | ATACGAGTTTAAACATTAAA+TGG | + | chr3_1:91072932-91072951 | Msa0387160:three_prime_UTR | 20.0% |
| !! | TTTAAACATTAAATGGTGAT+TGG | + | chr3_1:91072939-91072958 | Msa0387160:three_prime_UTR | 20.0% |
| ! | TTTGAAAACTCAATTCGAAA+CGG | + | chr3_1:91066875-91066894 | Msa0387160:intron | 25.0% |
| ! | AAATAAAATGCAACACATTC+AGG | - | chr3_1:91067451-91067470 | None:intergenic | 25.0% |
| ! | ATGATAAGAATGTTAGTGTA+TGG | + | chr3_1:91067727-91067746 | Msa0387160:intron | 25.0% |
| !! | CATAATTTAGAATGCAGAAT+TGG | + | chr3_1:91067908-91067927 | Msa0387160:intron | 25.0% |
| !!! | TTGGAGAACTTTTAAAGATA+TGG | + | chr3_1:91068057-91068076 | Msa0387160:intron | 25.0% |
| !!! | AGAACTTTTAAAGATATGGA+TGG | + | chr3_1:91068061-91068080 | Msa0387160:intron | 25.0% |
| ! | TCTTTACATTAGTACTTATG+TGG | - | chr3_1:91068087-91068106 | None:intergenic | 25.0% |
| ! | TATAAATTTGCCACTAAACT+AGG | + | chr3_1:91068291-91068310 | Msa0387160:intron | 25.0% |
| !!! | ATAAAACAGTCTTTTTGAAG+GGG | - | chr3_1:91068423-91068442 | None:intergenic | 25.0% |
| !! | GATAAAACAGTCTTTTTGAA+GGG | - | chr3_1:91068424-91068443 | None:intergenic | 25.0% |
| !! | AGATAAAACAGTCTTTTTGA+AGG | - | chr3_1:91068425-91068444 | None:intergenic | 25.0% |
| !! | TACTTACAATTTAAGGCATT+TGG | - | chr3_1:91068635-91068654 | None:intergenic | 25.0% |
| !! | GCTAAAGTACTTACAATTTA+AGG | - | chr3_1:91068642-91068661 | None:intergenic | 25.0% |
| ! | TGTATGAAAAACTTTCATCA+AGG | + | chr3_1:91068667-91068686 | Msa0387160:intron | 25.0% |
| !! | ATTGTTATAAAGAAAGTGCA+CGG | - | chr3_1:91068709-91068728 | None:intergenic | 25.0% |
| ! | TCATAATAATCTGAACAATG+AGG | + | chr3_1:91068807-91068826 | Msa0387160:CDS | 25.0% |
| ! | GTTTGTTCAAGACATTTAAA+TGG | - | chr3_1:91069052-91069071 | None:intergenic | 25.0% |
| !! | GTGTCTGAAATTCAATTAAT+AGG | + | chr3_1:91069082-91069101 | Msa0387160:CDS | 25.0% |
| ! | CTGAAATTCAATTAATAGGA+AGG | + | chr3_1:91069086-91069105 | Msa0387160:CDS | 25.0% |
| !!! | AACTAAGAAGTTGATAAATG+CGG | - | chr3_1:91069598-91069617 | None:intergenic | 25.0% |
| !!! | AATTATTTTATAGGCAGTGT+CGG | - | chr3_1:91069805-91069824 | None:intergenic | 25.0% |
| ! | TAATTTCAAGACCTAAATTC+AGG | + | chr3_1:91069820-91069839 | Msa0387160:CDS | 25.0% |
| ! | AAAATCACATACCTGAATTT+AGG | - | chr3_1:91069834-91069853 | None:intergenic | 25.0% |
| !! | AATTTGATGCATCTATTTTG+TGG | + | chr3_1:91070080-91070099 | Msa0387160:intron | 25.0% |
| ! | ATCAAATGTGTGAAAAAGTA+GGG | - | chr3_1:91070247-91070266 | None:intergenic | 25.0% |
| ! | AAAACAATTACAATGTCAGT+CGG | - | chr3_1:91070278-91070297 | None:intergenic | 25.0% |
| ! | AATAGAAGCTTCATATTTCT+CGG | - | chr3_1:91070346-91070365 | None:intergenic | 25.0% |
| !!! | TTTGCAATTTTGACATTGTT+GGG | + | chr3_1:91070733-91070752 | Msa0387160:intron | 25.0% |
| !! | CAAATGGGTTTATATTAAAG+AGG | + | chr3_1:91070856-91070875 | Msa0387160:intron | 25.0% |
| ! | AAAGCAAGAAATCTATAGAT+GGG | - | chr3_1:91070897-91070916 | None:intergenic | 25.0% |
| ! | TAAAGCAAGAAATCTATAGA+TGG | - | chr3_1:91070898-91070917 | None:intergenic | 25.0% |
| !!! | GATCTTTTTTATGATAGAGA+GGG | - | chr3_1:91071334-91071353 | None:intergenic | 25.0% |
| !!! | TGATCTTTTTTATGATAGAG+AGG | - | chr3_1:91071335-91071354 | None:intergenic | 25.0% |
| ! | TTATCGATATCAAAACCTTT+AGG | + | chr3_1:91071364-91071383 | Msa0387160:intron | 25.0% |
| ! | TATTAGACAAAAAAGAGCTT+AGG | + | chr3_1:91071412-91071431 | Msa0387160:intron | 25.0% |
| ! | AAACTTAACATCCTAAAAAG+AGG | - | chr3_1:91071572-91071591 | None:intergenic | 25.0% |
| ! | TTAAATATGTGATGTGATTG+AGG | + | chr3_1:91071645-91071664 | Msa0387160:intron | 25.0% |
| ! | ATCAGAAAACACTAGAATAT+AGG | - | chr3_1:91071912-91071931 | None:intergenic | 25.0% |
| !!! | TCTTTTATTTTTTCCCAGAA+TGG | + | chr3_1:91071956-91071975 | Msa0387160:intron | 25.0% |
| ! | TTTATTTAACATCAGTAACC+TGG | + | chr3_1:91072090-91072109 | Msa0387160:intron | 25.0% |
| ! | TTATTTAACATCAGTAACCT+GGG | + | chr3_1:91072091-91072110 | Msa0387160:intron | 25.0% |
| ! | ATAGAAGTTTGATGGAATAA+AGG | - | chr3_1:91072146-91072165 | None:intergenic | 25.0% |
| ! | TTAACTCCAATATACAAGTA+AGG | - | chr3_1:91072516-91072535 | None:intergenic | 25.0% |
| ! | TGTATATTGGAGTTAAGAAA+AGG | + | chr3_1:91072520-91072539 | Msa0387160:three_prime_UTR | 25.0% |
| !! | TCTCTTTCAAATATTTTGTC+TGG | + | chr3_1:91072611-91072630 | Msa0387160:three_prime_UTR | 25.0% |
| !! | TGTTTACTTTCAACTTTTCA+AGG | + | chr3_1:91072725-91072744 | Msa0387160:three_prime_UTR | 25.0% |
| !!! | AAGTTTCTAAGACCAAAAAT+GGG | - | chr3_1:91072784-91072803 | None:intergenic | 25.0% |
| !!! | TAAGTTTCTAAGACCAAAAA+TGG | - | chr3_1:91072785-91072804 | None:intergenic | 25.0% |
| ! | ACATTCATATCATTTCATGT+CGG | + | chr3_1:91072841-91072860 | Msa0387160:three_prime_UTR | 25.0% |
| ! | AAGCTTAACGAGATCATTTT+TGG | + | chr3_1:91066935-91066954 | Msa0387160:intron | 30.0% |
| ATTATAAACCCATACACAAG+TGG | + | chr3_1:91067502-91067521 | Msa0387160:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr3_1:91067549-91067568 | Msa0387160:intron | 30.0% | |
| !!! | TTTTTTTTTTGTGGTGTTCG+AGG | - | chr3_1:91067588-91067607 | None:intergenic | 30.0% |
| ! | TAACAATTTCGGCATTTTGA+CGG | + | chr3_1:91067666-91067685 | Msa0387160:intron | 30.0% |
| AATGCAGAATTGGATGTATT+AGG | + | chr3_1:91067918-91067937 | Msa0387160:intron | 30.0% | |
| ATGCAGAATTGGATGTATTA+GGG | + | chr3_1:91067919-91067938 | Msa0387160:intron | 30.0% | |
| ATGTATTAGGGATGTATGTT+TGG | + | chr3_1:91067931-91067950 | Msa0387160:intron | 30.0% | |
| TTAGCTTCTATTTGAAGACA+AGG | + | chr3_1:91067991-91068010 | Msa0387160:intron | 30.0% | |
| TAGCTTCTATTTGAAGACAA+GGG | + | chr3_1:91067992-91068011 | Msa0387160:intron | 30.0% | |
| !! | TACTAATGTAAAGAGCATCA+GGG | + | chr3_1:91068093-91068112 | Msa0387160:intron | 30.0% |
| ATGCAATCATTAACAAACCT+CGG | - | chr3_1:91068252-91068271 | None:intergenic | 30.0% | |
| GGGACCGTATAAAATATAAA+TGG | - | chr3_1:91068403-91068422 | None:intergenic | 30.0% | |
| !!! | TTTAACCCTGCTTTATTTTG+AGG | - | chr3_1:91068568-91068587 | None:intergenic | 30.0% |
| TCAAAATAAAGCAGGGTTAA+AGG | + | chr3_1:91068567-91068586 | Msa0387160:CDS | 30.0% | |
| ! | ACACTCTAAAGAAGCAAAAA+CGG | + | chr3_1:91068593-91068612 | Msa0387160:CDS | 30.0% |
| !!! | ATTTTTGGTCTGAAAGCATT+TGG | - | chr3_1:91068874-91068893 | None:intergenic | 30.0% |
| !!! | ATAGAAACTTCTGGTTTTTG+CGG | - | chr3_1:91068907-91068926 | None:intergenic | 30.0% |
| !! | GGTGCTGTTAATAACTATTA+TGG | + | chr3_1:91068995-91069014 | Msa0387160:intron | 30.0% |
| !!! | CTGATATTTTAGCTTACTTG+TGG | + | chr3_1:91069024-91069043 | Msa0387160:intron | 30.0% |
| TAAATGTCTTGAACAAACTC+AGG | + | chr3_1:91069054-91069073 | Msa0387160:intron | 30.0% | |
| ! | TTAATAGGAAGGCACAATAA+AGG | + | chr3_1:91069097-91069116 | Msa0387160:CDS | 30.0% |
| AACACTCACAATACTTCTTA+AGG | - | chr3_1:91069144-91069163 | None:intergenic | 30.0% | |
| ! | ATTTACAATTTTCAGAGCAG+AGG | - | chr3_1:91069180-91069199 | None:intergenic | 30.0% |
| ! | ATTGACTGCAAGAATTTTGA+AGG | + | chr3_1:91069202-91069221 | Msa0387160:CDS | 30.0% |
| ! | AAAATCCAGGAAAGTTTTTC+TGG | + | chr3_1:91069361-91069380 | Msa0387160:CDS | 30.0% |
| GCTTCTTTGCATTATTGATA+CGG | + | chr3_1:91069435-91069454 | Msa0387160:intron | 30.0% | |
| TTAGTTACTCTTTCTGTTGT+AGG | + | chr3_1:91069484-91069503 | Msa0387160:intron | 30.0% | |
| TAGTTACTCTTTCTGTTGTA+GGG | + | chr3_1:91069485-91069504 | Msa0387160:intron | 30.0% | |
| CCAAACATAGTGAATTTGAA+TGG | - | chr3_1:91069514-91069533 | None:intergenic | 30.0% | |
| CCATTCAAATTCACTATGTT+TGG | + | chr3_1:91069511-91069530 | Msa0387160:intron | 30.0% | |
| !! | ACTAAGAAGTTGATAAATGC+GGG | - | chr3_1:91069597-91069616 | None:intergenic | 30.0% |
| !!! | TTAGTTCTGTTTTAATCCCT+TGG | + | chr3_1:91069612-91069631 | Msa0387160:intron | 30.0% |
| AAATTAATAGGGAAGTAGCA+AGG | - | chr3_1:91069650-91069669 | None:intergenic | 30.0% | |
| !! | CGCTATCTTGAATTTTAATC+AGG | + | chr3_1:91069728-91069747 | Msa0387160:intron | 30.0% |
| !! | TTTTTCAATCATTAGGTGAG+CGG | + | chr3_1:91069853-91069872 | Msa0387160:intron | 30.0% |
| ! | TTTCCAAATTTTATGCTGCT+AGG | + | chr3_1:91070140-91070159 | Msa0387160:intron | 30.0% |
| TCAAATGTGTGAAAAAGTAG+GGG | - | chr3_1:91070246-91070265 | None:intergenic | 30.0% | |
| GATCAAATGTGTGAAAAAGT+AGG | - | chr3_1:91070248-91070267 | None:intergenic | 30.0% | |
| TTCAAATTTCCAGAAATGAG+AGG | + | chr3_1:91070297-91070316 | Msa0387160:intron | 30.0% | |
| TCAAATTTCCAGAAATGAGA+GGG | + | chr3_1:91070298-91070317 | Msa0387160:intron | 30.0% | |
| CACATCAATTTAAGTGTTTC+TGG | - | chr3_1:91070489-91070508 | None:intergenic | 30.0% | |
| TAAATTGATGTGTGATGAAC+AGG | + | chr3_1:91070497-91070516 | Msa0387160:CDS | 30.0% | |
| CTTGGTGAACTGATTATTAT+TGG | + | chr3_1:91070669-91070688 | Msa0387160:CDS | 30.0% | |
| ! | TATTGGTAGCATTAAAGGTT+AGG | + | chr3_1:91070686-91070705 | Msa0387160:intron | 30.0% |
| CAACAATGTCAAAATTGCAA+AGG | - | chr3_1:91070734-91070753 | None:intergenic | 30.0% | |
| !! | CTTTGCAATTTTGACATTGT+TGG | + | chr3_1:91070732-91070751 | Msa0387160:intron | 30.0% |
| !! | TTGCAATTTTGACATTGTTG+GGG | + | chr3_1:91070734-91070753 | Msa0387160:intron | 30.0% |
| TCCTGTCTTAAATATACATG+TGG | + | chr3_1:91070776-91070795 | Msa0387160:intron | 30.0% | |
| ! | ACCACATGTATATTTAAGAC+AGG | - | chr3_1:91070780-91070799 | None:intergenic | 30.0% |
| TGAAATTAAGAACGTCAAGT+TGG | + | chr3_1:91071112-91071131 | Msa0387160:intron | 30.0% | |
| GAAGAAAATGGTGATAAGTA+TGG | + | chr3_1:91071235-91071254 | Msa0387160:intron | 30.0% | |
| CTAATATAGAAAGATGTTCC+TGG | - | chr3_1:91071398-91071417 | None:intergenic | 30.0% | |
| TACAATGTATTGAGTGTGTT+GGG | - | chr3_1:91071504-91071523 | None:intergenic | 30.0% | |
| ATACAATGTATTGAGTGTGT+TGG | - | chr3_1:91071505-91071524 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGAGACCTCTTTTT+AGG | + | chr3_1:91071558-91071577 | Msa0387160:intron | 30.0% |
| TTTCCACAACTGAAAAATCA+AGG | + | chr3_1:91071604-91071623 | Msa0387160:intron | 30.0% | |
| AACACACTTAAAGAATACGA+AGG | - | chr3_1:91071833-91071852 | None:intergenic | 30.0% | |
| TTAATCGTCATTAAGGAGTA+AGG | - | chr3_1:91071858-91071877 | None:intergenic | 30.0% | |
| GAGAAAACACCTAAAAACAA+TGG | + | chr3_1:91072267-91072286 | Msa0387160:CDS | 30.0% | |
| AATATACAAGTAAGGTCACT+AGG | - | chr3_1:91072508-91072527 | None:intergenic | 30.0% | |
| TAGTGACCTTACTTGTATAT+TGG | + | chr3_1:91072507-91072526 | Msa0387160:three_prime_UTR | 30.0% | |
| ATGTGCATATAGTTAGATGT+TGG | + | chr3_1:91072582-91072601 | Msa0387160:three_prime_UTR | 30.0% | |
| !! | TAAGACCAAAAATGGGTTTT+CGG | - | chr3_1:91072777-91072796 | None:intergenic | 30.0% |
| TTCTTGAAGCAAGAAATCGA+CGG | - | chr3_1:91066809-91066828 | None:intergenic | 35.0% | |
| AATTACAATCCGTAACGCAT+AGG | + | chr3_1:91066827-91066846 | Msa0387160:five_prime_UTR | 35.0% | |
| GAAACTTTACCTATGCGTTA+CGG | - | chr3_1:91066839-91066858 | None:intergenic | 35.0% | |
| GGTTTAAGAAGAAACGTTGA+TGG | + | chr3_1:91066982-91067001 | Msa0387160:intron | 35.0% | |
| TGAATCATCGAAACTAACTG+CGG | - | chr3_1:91067298-91067317 | None:intergenic | 35.0% | |
| AAAACACCATACACAAGTGA+AGG | + | chr3_1:91067608-91067627 | Msa0387160:intron | 35.0% | |
| GTTGTTCGACCTAACAATTT+CGG | + | chr3_1:91067655-91067674 | Msa0387160:intron | 35.0% | |
| GTCAAAATGCCGAAATTGTT+AGG | - | chr3_1:91067667-91067686 | None:intergenic | 35.0% | |
| TTAAATGCAACACAATCCAC+AGG | - | chr3_1:91067703-91067722 | None:intergenic | 35.0% | |
| TAATTAACCACACGTTGTGT+TGG | + | chr3_1:91067802-91067821 | Msa0387160:intron | 35.0% | |
| TAGAAACATAAGGCTTATGC+TGG | + | chr3_1:91067965-91067984 | Msa0387160:intron | 35.0% | |
| !! | GTACTAATGTAAAGAGCATC+AGG | + | chr3_1:91068092-91068111 | Msa0387160:intron | 35.0% |
| !!! | TATTTTGAGGCTGTGATCTA+GGG | - | chr3_1:91068555-91068574 | None:intergenic | 35.0% |
| !!! | TTATTTTGAGGCTGTGATCT+AGG | - | chr3_1:91068556-91068575 | None:intergenic | 35.0% |
| ! | TAGCTAATTTTGCAACTGCA+AGG | + | chr3_1:91068728-91068747 | Msa0387160:intron | 35.0% |
| GCAAAAACCAGAAGTTTCTA+TGG | + | chr3_1:91068906-91068925 | Msa0387160:CDS | 35.0% | |
| CTACTAACCATAGAAACTTC+TGG | - | chr3_1:91068916-91068935 | None:intergenic | 35.0% | |
| CTCCCTCATGTATTTATAGT+TGG | + | chr3_1:91068946-91068965 | Msa0387160:intron | 35.0% | |
| CGCCAACTATAAATACATGA+GGG | - | chr3_1:91068951-91068970 | None:intergenic | 35.0% | |
| ACGCCAACTATAAATACATG+AGG | - | chr3_1:91068952-91068971 | None:intergenic | 35.0% | |
| TGCATCAGTGAGCTAAAATT+TGG | + | chr3_1:91068974-91068993 | Msa0387160:intron | 35.0% | |
| !! | ATTTTGAAGGAAGTGACGAA+TGG | + | chr3_1:91069215-91069234 | Msa0387160:CDS | 35.0% |
| ! | TAGTCTAGTTCAAATCAGAC+AGG | + | chr3_1:91069261-91069280 | Msa0387160:CDS | 35.0% |
| ! | TCTCTTCTTGGGTGTTATAT+GGG | - | chr3_1:91069341-91069360 | None:intergenic | 35.0% |
| ! | TTCTCTTCTTGGGTGTTATA+TGG | - | chr3_1:91069342-91069361 | None:intergenic | 35.0% |
| ! | TCCTGGATTTTTCTCTTCTT+GGG | - | chr3_1:91069352-91069371 | None:intergenic | 35.0% |
| ! | TTCCTGGATTTTTCTCTTCT+TGG | - | chr3_1:91069353-91069372 | None:intergenic | 35.0% |
| ATTTGCCAGAAAAACTTTCC+TGG | - | chr3_1:91069369-91069388 | None:intergenic | 35.0% | |
| CATTATTGATACGGTTTCGT+TGG | + | chr3_1:91069444-91069463 | Msa0387160:intron | 35.0% | |
| !! | CTAAGAAGTTGATAAATGCG+GGG | - | chr3_1:91069596-91069615 | None:intergenic | 35.0% |
| ! | AAGGAAATTGATGGTTCCAA+GGG | - | chr3_1:91069631-91069650 | None:intergenic | 35.0% |
| ! | GATTTTTCACATTCTGTGTC+TGG | - | chr3_1:91069964-91069983 | None:intergenic | 35.0% |
| ATTTGTCTTTGCAGCTTCTT+TGG | - | chr3_1:91070011-91070030 | None:intergenic | 35.0% | |
| ! | TTGATGCATCTATTTTGTGG+TGG | + | chr3_1:91070083-91070102 | Msa0387160:intron | 35.0% |
| TGTCCTAGCAGCATAAAATT+TGG | - | chr3_1:91070146-91070165 | None:intergenic | 35.0% | |
| !! | TGCAATTTTGACATTGTTGG+GGG | + | chr3_1:91070735-91070754 | Msa0387160:intron | 35.0% |
| !! | TTTTTCAGCTATGTCAAACG+AGG | - | chr3_1:91070827-91070846 | None:intergenic | 35.0% |
| AGAAATCTATAGATGGGTCA+CGG | - | chr3_1:91070891-91070910 | None:intergenic | 35.0% | |
| ATGTGAGTGAGACAAAAAGA+TGG | - | chr3_1:91070933-91070952 | None:intergenic | 35.0% | |
| AAAAAGATTCTTGGCTCATG+AGG | - | chr3_1:91070959-91070978 | None:intergenic | 35.0% | |
| TCACCATGCAAAAAGATTCT+TGG | - | chr3_1:91070968-91070987 | None:intergenic | 35.0% | |
| ! | AATCTTTTTGCATGGTGAGA+TGG | + | chr3_1:91070970-91070989 | Msa0387160:intron | 35.0% |
| ! | ATCTTTTTGCATGGTGAGAT+GGG | + | chr3_1:91070971-91070990 | Msa0387160:intron | 35.0% |
| AAGCGTAATGCATCATAAAG+AGG | - | chr3_1:91071042-91071061 | None:intergenic | 35.0% | |
| TCTGAATCAAGAAGCAATTC+TGG | + | chr3_1:91071204-91071223 | Msa0387160:intron | 35.0% | |
| ! | CTTATCACCATTTTCTTCCT+TGG | - | chr3_1:91071233-91071252 | None:intergenic | 35.0% |
| ! | CCATTTACAGTCTTTTACCT+AGG | - | chr3_1:91071309-91071328 | None:intergenic | 35.0% |
| CCTAGGTAAAAGACTGTAAA+TGG | + | chr3_1:91071306-91071325 | Msa0387160:intron | 35.0% | |
| !! | AACCTTTAGGATAGTTATCC+AGG | + | chr3_1:91071377-91071396 | Msa0387160:intron | 35.0% |
| TTCCTGGATAACTATCCTAA+AGG | - | chr3_1:91071382-91071401 | None:intergenic | 35.0% | |
| !! | CTTCCTTGATTTTTCAGTTG+TGG | - | chr3_1:91071610-91071629 | None:intergenic | 35.0% |
| !!! | TTATTTTTTCCCAGAATGGC+TGG | + | chr3_1:91071960-91071979 | Msa0387160:intron | 35.0% |
| ATATGGCTAAAGATGAACTG+AGG | - | chr3_1:91072009-91072028 | None:intergenic | 35.0% | |
| !! | CCACTATCACCATTGTTTTT+AGG | - | chr3_1:91072279-91072298 | None:intergenic | 35.0% |
| CCTAAAAACAATGGTGATAG+TGG | + | chr3_1:91072276-91072295 | Msa0387160:CDS | 35.0% | |
| ! | ATGTCCATTAGTTCTTGCAT+AGG | - | chr3_1:91072364-91072383 | None:intergenic | 35.0% |
| ATACTACTGATCTTTCGTTG+AGG | + | chr3_1:91072385-91072404 | Msa0387160:CDS | 35.0% | |
| ! | GACTTCCTTTTTCTTTTGAC+AGG | + | chr3_1:91072457-91072476 | Msa0387160:three_prime_UTR | 35.0% |
| TCAGTCCTGTCAAAAGAAAA+AGG | - | chr3_1:91072465-91072484 | None:intergenic | 35.0% | |
| ! | TCTTTTGACAGGACTGAATT+TGG | + | chr3_1:91072468-91072487 | Msa0387160:three_prime_UTR | 35.0% |
| !! | CTTGTGTATCTTCAAGTTGA+TGG | + | chr3_1:91072904-91072923 | Msa0387160:three_prime_UTR | 35.0% |
| CATGCAGAGAATGGAATTTC+CGG | - | chr3_1:91066746-91066765 | None:intergenic | 40.0% | |
| AGACGAAAACATGCAGAGAA+TGG | - | chr3_1:91066755-91066774 | None:intergenic | 40.0% | |
| !! | ATCGTTGAGTTGTCTTTTGC+AGG | + | chr3_1:91066961-91066980 | Msa0387160:intron | 40.0% |
| TAGCTAATCGGAAATTTGCG+CGG | + | chr3_1:91067029-91067048 | Msa0387160:CDS | 40.0% | |
| AAATCCAAATGCATTTGCGC+CGG | - | chr3_1:91067172-91067191 | None:intergenic | 40.0% | |
| ! | ATTTTCAGTCACCAGTGAGA+CGG | + | chr3_1:91067188-91067207 | Msa0387160:CDS | 40.0% |
| GAATCATCGAAACTAACTGC+GGG | - | chr3_1:91067297-91067316 | None:intergenic | 40.0% | |
| TGTTGATGCATATCGAACAC+CGG | + | chr3_1:91067825-91067844 | Msa0387160:intron | 40.0% | |
| ! | TGTGCGAAAAGCATGATTCT+TGG | + | chr3_1:91068038-91068057 | Msa0387160:intron | 40.0% |
| ! | TTGGTGATTGCCTAGTTTAG+TGG | - | chr3_1:91068304-91068323 | None:intergenic | 40.0% |
| TCACAGCCTCAAAATAAAGC+AGG | + | chr3_1:91068559-91068578 | Msa0387160:CDS | 40.0% | |
| CACAGCCTCAAAATAAAGCA+GGG | + | chr3_1:91068560-91068579 | Msa0387160:CDS | 40.0% | |
| TCATTCCAATTGCCTCCTTT+CGG | - | chr3_1:91068837-91068856 | None:intergenic | 40.0% | |
| ATGTCTTGAACAAACTCAGG+AGG | + | chr3_1:91069057-91069076 | Msa0387160:intron | 40.0% | |
| AAAGGATGTCACTGCAAGAA+AGG | + | chr3_1:91069115-91069134 | Msa0387160:CDS | 40.0% | |
| GCAACTAATGCTGCCATTAA+TGG | + | chr3_1:91069283-91069302 | Msa0387160:CDS | 40.0% | |
| AAGTCCAACTGCTCCATTAA+TGG | - | chr3_1:91069299-91069318 | None:intergenic | 40.0% | |
| ATTAATGGAGCAGTTGGACT+TGG | + | chr3_1:91069298-91069317 | Msa0387160:CDS | 40.0% | |
| TGTTATATGGGTTCCAGAGA+TGG | - | chr3_1:91069329-91069348 | None:intergenic | 40.0% | |
| ACCCAAGAAGAGAAAAATCC+AGG | + | chr3_1:91069348-91069367 | Msa0387160:CDS | 40.0% | |
| TCACTCACAGATCAAACTGT+CGG | + | chr3_1:91069388-91069407 | Msa0387160:CDS | 40.0% | |
| !! | TAATGCAAAGAAGCACCTGT+TGG | - | chr3_1:91069429-91069448 | None:intergenic | 40.0% |
| ! | CAAGGAAATTGATGGTTCCA+AGG | - | chr3_1:91069632-91069651 | None:intergenic | 40.0% |
| GGAAGTAGCAAGGAAATTGA+TGG | - | chr3_1:91069640-91069659 | None:intergenic | 40.0% | |
| GATAAGGGAGATGAAGCTAT+AGG | - | chr3_1:91069762-91069781 | None:intergenic | 40.0% | |
| TTCATGTTGAAGGTCTGTGT+TGG | + | chr3_1:91069928-91069947 | Msa0387160:intron | 40.0% | |
| ! | TTTTCACATTCTGTGTCTGG+AGG | - | chr3_1:91069961-91069980 | None:intergenic | 40.0% |
| !!! | TGCAGGTTTTGACTAACACA+TGG | + | chr3_1:91070030-91070049 | Msa0387160:intron | 40.0% |
| ATGTGTGAAAAAGTAGGGGA+CGG | - | chr3_1:91070242-91070261 | None:intergenic | 40.0% | |
| TTTGCATGATTCTCCGAAAC+AGG | - | chr3_1:91070414-91070433 | None:intergenic | 40.0% | |
| !! | TTAAGTGTTTCTGGTGACAG+TGG | - | chr3_1:91070480-91070499 | None:intergenic | 40.0% |
| TTGATGTGTGATGAACAGGA+TGG | + | chr3_1:91070501-91070520 | Msa0387160:CDS | 40.0% | |
| TGATGTGTGATGAACAGGAT+GGG | + | chr3_1:91070502-91070521 | Msa0387160:CDS | 40.0% | |
| ! | GAACAGGATGGGATGTTTTT+CGG | + | chr3_1:91070513-91070532 | Msa0387160:CDS | 40.0% |
| !! | GATGGGATGTTTTTCGGTAA+TGG | + | chr3_1:91070519-91070538 | Msa0387160:CDS | 40.0% |
| ! | TTCGGTAATGGTTCTGCAAA+TGG | + | chr3_1:91070531-91070550 | Msa0387160:CDS | 40.0% |
| CAAAAGTCTTCCAACTCTGA+TGG | + | chr3_1:91070588-91070607 | Msa0387160:CDS | 40.0% | |
| GTTGGGGGAAAAATTAACTC+AGG | + | chr3_1:91070750-91070769 | Msa0387160:intron | 40.0% | |
| GAAATCTATAGATGGGTCAC+GGG | - | chr3_1:91070890-91070909 | None:intergenic | 40.0% | |
| ! | GAGCCAAGAATCTTTTTGCA+TGG | + | chr3_1:91070962-91070981 | Msa0387160:intron | 40.0% |
| ATCATAAAGAGGCCAGGTAT+GGG | - | chr3_1:91071031-91071050 | None:intergenic | 40.0% | |
| TAATGCATCATAAAGAGGCC+AGG | - | chr3_1:91071037-91071056 | None:intergenic | 40.0% | |
| GATGATGCTACAAAGTAAGC+TGG | - | chr3_1:91071082-91071101 | None:intergenic | 40.0% | |
| CACTGCTATGGGTGAATATA+TGG | - | chr3_1:91071156-91071175 | None:intergenic | 40.0% | |
| CGAGGATAGTTGCTATAGTT+TGG | - | chr3_1:91071284-91071303 | None:intergenic | 40.0% | |
| ! | CAAGGAAGCGCATTGTTATT+TGG | + | chr3_1:91071622-91071641 | Msa0387160:intron | 40.0% |
| AGATTGCAGAAGCAGAAAGT+GGG | + | chr3_1:91071747-91071766 | Msa0387160:intron | 40.0% | |
| TCTGTTCTGTCTCTCTCTTT+GGG | + | chr3_1:91071788-91071807 | Msa0387160:intron | 40.0% | |
| !! | TGATAGTGGTGCTGAAACTA+AGG | + | chr3_1:91072290-91072309 | Msa0387160:CDS | 40.0% |
| ! | GATAGTGGTGCTGAAACTAA+GGG | + | chr3_1:91072291-91072310 | Msa0387160:CDS | 40.0% |
| GCTACCTATGCAAGAACTAA+TGG | + | chr3_1:91072357-91072376 | Msa0387160:CDS | 40.0% | |
| ATACACCAGATTACCACTTC+CGG | - | chr3_1:91072430-91072449 | None:intergenic | 40.0% | |
| GGACTGAATTTGGATTGTGA+AGG | + | chr3_1:91072478-91072497 | Msa0387160:three_prime_UTR | 40.0% | |
| TTGACTCAACTGCATGTAAC+TGG | + | chr3_1:91072647-91072666 | Msa0387160:three_prime_UTR | 40.0% | |
| !! | TGACGTTGATAACCAAGTCT+TGG | + | chr3_1:91072681-91072700 | Msa0387160:three_prime_UTR | 40.0% |
| ! | TTGATAACCAAGTCTTGGCA+TGG | + | chr3_1:91072686-91072705 | Msa0387160:three_prime_UTR | 40.0% |
| TCATGTCGGAATTCAACATC+AGG | + | chr3_1:91072855-91072874 | Msa0387160:three_prime_UTR | 40.0% | |
| CATGTCGGAATTCAACATCA+GGG | + | chr3_1:91072856-91072875 | Msa0387160:three_prime_UTR | 40.0% | |
| ATTCACCGCAACAAACTCTC+CGG | + | chr3_1:91066686-91066705 | Msa0387160:five_prime_UTR | 45.0% | |
| GGTGTGACGAGAAAGATTGA+CGG | - | chr3_1:91066725-91066744 | None:intergenic | 45.0% | |
| GTCAATCTTTCTCGTCACAC+CGG | + | chr3_1:91066724-91066743 | Msa0387160:five_prime_UTR | 45.0% | |
| CGACGCTGGATTTAGCTAAT+CGG | + | chr3_1:91067017-91067036 | Msa0387160:CDS | 45.0% | |
| ! | ATGGTTTGTGACAGTGACTG+CGG | - | chr3_1:91067115-91067134 | None:intergenic | 45.0% |
| ! | TGTGGTGGTGATTGTTTCCA+CGG | - | chr3_1:91067214-91067233 | None:intergenic | 45.0% |
| GATTGAAAATGCGGCATCAC+CGG | - | chr3_1:91067268-91067287 | None:intergenic | 45.0% | |
| TTACCAAAGCTAAGCTCACG+GGG | - | chr3_1:91067528-91067547 | None:intergenic | 45.0% | |
| CTTACCAAAGCTAAGCTCAC+GGG | - | chr3_1:91067529-91067548 | None:intergenic | 45.0% | |
| CCTTACCAAAGCTAAGCTCA+CGG | - | chr3_1:91067530-91067549 | None:intergenic | 45.0% | |
| CCAACACCTTCACTTGTGTA+TGG | - | chr3_1:91067617-91067636 | None:intergenic | 45.0% | |
| ! | CCATACACAAGTGAAGGTGT+TGG | + | chr3_1:91067614-91067633 | Msa0387160:intron | 45.0% |
| TTAGGTCGAACAACATGACC+GGG | - | chr3_1:91067649-91067668 | None:intergenic | 45.0% | |
| GTTAGGTCGAACAACATGAC+CGG | - | chr3_1:91067650-91067669 | None:intergenic | 45.0% | |
| ATCAACACCAACACAACGTG+TGG | - | chr3_1:91067812-91067831 | None:intergenic | 45.0% | |
| ! | CTCCATACGAAAAGTGTGTC+CGG | - | chr3_1:91067847-91067866 | None:intergenic | 45.0% |
| CATTCCAATTGCCTCCTTTC+GGG | - | chr3_1:91068836-91068855 | None:intergenic | 45.0% | |
| !! | TGCGGACTGCTTGCAATTTT+TGG | - | chr3_1:91068889-91068908 | None:intergenic | 45.0% |
| ! | ATTTTCAGAGCAGAGGACGT+TGG | - | chr3_1:91069173-91069192 | None:intergenic | 45.0% |
| ATATGGGTTCCAGAGATGGA+GGG | - | chr3_1:91069325-91069344 | None:intergenic | 45.0% | |
| TATATGGGTTCCAGAGATGG+AGG | - | chr3_1:91069326-91069345 | None:intergenic | 45.0% | |
| TACAATCGGATGTCAGAGCA+TGG | - | chr3_1:91069694-91069713 | None:intergenic | 45.0% | |
| AAGGAAGCTGACAGGGATAA+GGG | - | chr3_1:91069777-91069796 | None:intergenic | 45.0% | |
| AAAGGAAGCTGACAGGGATA+AGG | - | chr3_1:91069778-91069797 | None:intergenic | 45.0% | |
| GGAAACAAAGGAAGCTGACA+GGG | - | chr3_1:91069784-91069803 | None:intergenic | 45.0% | |
| ! | ATAGGCAGTGTCGGAAACAA+AGG | - | chr3_1:91069796-91069815 | None:intergenic | 45.0% |
| GAAGCTGCAAAGACAAATGC+AGG | + | chr3_1:91070013-91070032 | Msa0387160:CDS | 45.0% | |
| TGTGTGAAAAAGTAGGGGAC+GGG | - | chr3_1:91070241-91070260 | None:intergenic | 45.0% | |
| AAATGAGAGGGAAAGCTGCT+AGG | + | chr3_1:91070310-91070329 | Msa0387160:CDS | 45.0% | |
| AGATGTTGCCAAGCCTGTTT+CGG | + | chr3_1:91070398-91070417 | Msa0387160:CDS | 45.0% | |
| ATGATTCTCCGAAACAGGCT+TGG | - | chr3_1:91070409-91070428 | None:intergenic | 45.0% | |
| AGCAGTGTATCCATCAGAGT+TGG | - | chr3_1:91070601-91070620 | None:intergenic | 45.0% | |
| CTGTTTATGCAGAGCAGGAA+AGG | + | chr3_1:91070619-91070638 | Msa0387160:CDS | 45.0% | |
| !! | TGGGCATATTGATTCAGCTG+AGG | + | chr3_1:91070990-91071009 | Msa0387160:intron | 45.0% |
| CATCATAAAGAGGCCAGGTA+TGG | - | chr3_1:91071032-91071051 | None:intergenic | 45.0% | |
| CAACAAGGTGACACTGCTAT+GGG | - | chr3_1:91071167-91071186 | None:intergenic | 45.0% | |
| ACAACAAGGTGACACTGCTA+TGG | - | chr3_1:91071168-91071187 | None:intergenic | 45.0% | |
| ! | GTCACCTTGTTGTCATGCAT+CGG | + | chr3_1:91071175-91071194 | Msa0387160:intron | 45.0% |
| TAAGCCGATGCATGACAACA+AGG | - | chr3_1:91071182-91071201 | None:intergenic | 45.0% | |
| AGAAGCAATTCTGGTCACCA+AGG | + | chr3_1:91071213-91071232 | Msa0387160:intron | 45.0% | |
| CTGGTCACCAAGGAAGAAAA+TGG | + | chr3_1:91071223-91071242 | Msa0387160:intron | 45.0% | |
| TAGCAACTATCCTCGTTCCT+AGG | + | chr3_1:91071289-91071308 | Msa0387160:intron | 45.0% | |
| ! | CAGTCTTTTACCTAGGAACG+AGG | - | chr3_1:91071302-91071321 | None:intergenic | 45.0% |
| CACTTTCTGCTTCTGCAATC+TGG | - | chr3_1:91071748-91071767 | None:intergenic | 45.0% | |
| CAGATTGCAGAAGCAGAAAG+TGG | + | chr3_1:91071746-91071765 | Msa0387160:intron | 45.0% | |
| CTCTGTTCTGTCTCTCTCTT+TGG | + | chr3_1:91071787-91071806 | Msa0387160:intron | 45.0% | |
| CTGTTCTGTCTCTCTCTTTG+GGG | + | chr3_1:91071789-91071808 | Msa0387160:intron | 45.0% | |
| !!! | TTTTTTCCCAGAATGGCTGG+TGG | + | chr3_1:91071963-91071982 | Msa0387160:intron | 45.0% |
| CATTATTCTTGCAGTTGCCC+AGG | - | chr3_1:91072111-91072130 | None:intergenic | 45.0% | |
| TTCTTGCATAGGTAGCCACT+GGG | - | chr3_1:91072353-91072372 | None:intergenic | 45.0% | |
| AACAACCGGAAGTGGTAATC+TGG | + | chr3_1:91072422-91072441 | Msa0387160:exon | 45.0% | |
| ! | TACGGGCTGCACAAAAAAAC+TGG | - | chr3_1:91072549-91072568 | None:intergenic | 45.0% |
| ACATGAGCAGCATCACTTAC+GGG | - | chr3_1:91072566-91072585 | None:intergenic | 45.0% | |
| CACATGAGCAGCATCACTTA+CGG | - | chr3_1:91072567-91072586 | None:intergenic | 45.0% | |
| GGTTATCAACGTCACTAGAG+AGG | - | chr3_1:91072675-91072694 | None:intergenic | 45.0% | |
| ! | GTCCACCGAAAACCCATTTT+TGG | + | chr3_1:91072769-91072788 | Msa0387160:three_prime_UTR | 45.0% |
| !! | GACCAAAAATGGGTTTTCGG+TGG | - | chr3_1:91072774-91072793 | None:intergenic | 45.0% |
| TCCGAAATATAGCCGCTGTA+AGG | + | chr3_1:91072807-91072826 | Msa0387160:three_prime_UTR | 45.0% | |
| GCCTTACAGCGGCTATATTT+CGG | - | chr3_1:91072811-91072830 | None:intergenic | 45.0% | |
| TGAGTACATGTGCCTTACAG+CGG | - | chr3_1:91072822-91072841 | None:intergenic | 45.0% | |
| !!! | TCTTTAAAATTTATAATTTA+GGG | - | chr3_1:91071704-91071723 | None:intergenic | 5.0% |
| GTGACGAGAAAGATTGACGG+CGG | - | chr3_1:91066722-91066741 | None:intergenic | 50.0% | |
| TCGGAAATTTGCGCGGCAAT+TGG | + | chr3_1:91067036-91067055 | Msa0387160:CDS | 50.0% | |
| GGAAACAATCACCACCACAG+TGG | + | chr3_1:91067215-91067234 | Msa0387160:CDS | 50.0% | |
| ! | GGAAGCTTTGGTGTGGAGTA+CGG | - | chr3_1:91067328-91067347 | None:intergenic | 50.0% |
| GTACTCCACACCAAAGCTTC+CGG | + | chr3_1:91067327-91067346 | Msa0387160:CDS | 50.0% | |
| AACCTCTTCACCGGAAGCTT+TGG | - | chr3_1:91067340-91067359 | None:intergenic | 50.0% | |
| AGCGCTTGAAACCTCTTCAC+CGG | - | chr3_1:91067349-91067368 | None:intergenic | 50.0% | |
| !! | CCGTGAGCTTAGCTTTGGTA+AGG | + | chr3_1:91067527-91067546 | Msa0387160:intron | 50.0% |
| TAGGTCGAACAACATGACCG+GGG | - | chr3_1:91067648-91067667 | None:intergenic | 50.0% | |
| !! | GGCATTTTGACGGTTGAGCT+AGG | + | chr3_1:91067676-91067695 | Msa0387160:intron | 50.0% |
| ! | CACCGGACACACTTTTCGTA+TGG | + | chr3_1:91067842-91067861 | Msa0387160:intron | 50.0% |
| GAGCATCAGGGATGAAAGTC+TGG | + | chr3_1:91068105-91068124 | Msa0387160:intron | 50.0% | |
| GCAATCTGAGCATCATTCCG+AGG | + | chr3_1:91068232-91068251 | Msa0387160:intron | 50.0% | |
| GCTAGGAGACTCGTTTCTGA+AGG | - | chr3_1:91068533-91068552 | None:intergenic | 50.0% | |
| TACTGTGAGTGCTATGCAGC+TGG | + | chr3_1:91068751-91068770 | Msa0387160:CDS | 50.0% | |
| ACTGTGAGTGCTATGCAGCT+GGG | + | chr3_1:91068752-91068771 | Msa0387160:CDS | 50.0% | |
| GCAGCTGGGATCTATTGTGA+TGG | + | chr3_1:91068766-91068785 | Msa0387160:CDS | 50.0% | |
| GGAGGCAATTGGAATGACAC+TGG | + | chr3_1:91068840-91068859 | Msa0387160:CDS | 50.0% | |
| GCTGCCATTAATGGAGCAGT+TGG | + | chr3_1:91069292-91069311 | Msa0387160:CDS | 50.0% | |
| CATGACTGCTCAACACCAAC+AGG | + | chr3_1:91069411-91069430 | Msa0387160:CDS | 50.0% | |
| CGGAAACAAAGGAAGCTGAC+AGG | - | chr3_1:91069785-91069804 | None:intergenic | 50.0% | |
| GCAGCTTTCCCTCTCATTTC+TGG | - | chr3_1:91070309-91070328 | None:intergenic | 50.0% | |
| ! | CACTGCTGTTTATGCAGAGC+AGG | + | chr3_1:91070614-91070633 | Msa0387160:CDS | 50.0% |
| GGCTTATCCTGACCAAGTTC+AGG | + | chr3_1:91070640-91070659 | Msa0387160:CDS | 50.0% | |
| CCAGGTATGGGTGTACTACA+TGG | - | chr3_1:91071019-91071038 | None:intergenic | 50.0% | |
| CCATGTAGTACACCCATACC+TGG | + | chr3_1:91071016-91071035 | Msa0387160:intron | 50.0% | |
| GTTCTTGCATAGGTAGCCAC+TGG | - | chr3_1:91072354-91072373 | None:intergenic | 50.0% | |
| TCTTTCGTTGAGGTTGCCTG+CGG | + | chr3_1:91072395-91072414 | Msa0387160:CDS | 50.0% | |
| ! | TTGCCTGCGGATTGAACAAC+CGG | + | chr3_1:91072408-91072427 | Msa0387160:exon | 50.0% |
| TCTGTGTCCATGCCAAGACT+TGG | - | chr3_1:91072696-91072715 | None:intergenic | 50.0% | |
| TGTTGCGGTGAATCCACCGT+GGG | - | chr3_1:91066679-91066698 | None:intergenic | 55.0% | |
| TTGTTGCGGTGAATCCACCG+TGG | - | chr3_1:91066680-91066699 | None:intergenic | 55.0% | |
| !! | GATCGCCGGAGAGTTTGTTG+CGG | - | chr3_1:91066694-91066713 | None:intergenic | 55.0% |
| GGCGACAATGTCAGGTACGA+CGG | - | chr3_1:91067085-91067104 | None:intergenic | 55.0% | |
| AAATGCATTTGCGCCGGAGG+AGG | - | chr3_1:91067166-91067185 | None:intergenic | 55.0% | |
| TCCTCCGGCGCAAATGCATT+TGG | + | chr3_1:91067165-91067184 | Msa0387160:CDS | 55.0% | |
| TCCAAATGCATTTGCGCCGG+AGG | - | chr3_1:91067169-91067188 | None:intergenic | 55.0% | |
| TGAAAATGCGGCATCACCGG+CGG | - | chr3_1:91067265-91067284 | None:intergenic | 55.0% | |
| GGGCGCGGTGATTGAAAATG+CGG | - | chr3_1:91067277-91067296 | None:intergenic | 55.0% | |
| ATCGAAACTAACTGCGGGCG+CGG | - | chr3_1:91067292-91067311 | None:intergenic | 55.0% | |
| ! | CTTCACCGGAAGCTTTGGTG+TGG | - | chr3_1:91067335-91067354 | None:intergenic | 55.0% |
| CACCAAAGCTTCCGGTGAAG+AGG | + | chr3_1:91067335-91067354 | Msa0387160:CDS | 55.0% | |
| TCACGGGGCCACTTGTGTAT+GGG | - | chr3_1:91067513-91067532 | None:intergenic | 55.0% | |
| GGTGTTCGAGGTTCGACACT+CGG | - | chr3_1:91067576-91067595 | None:intergenic | 55.0% | |
| !! | AGGTGTTGGTGTTCGAACCC+CGG | + | chr3_1:91067628-91067647 | Msa0387160:intron | 55.0% |
| ! | TGAGGCTGTGATCTAGGGCT+AGG | - | chr3_1:91068550-91068569 | None:intergenic | 55.0% |
| GAACAATGAGGCTGCCCGAA+AGG | + | chr3_1:91068819-91068838 | Msa0387160:CDS | 55.0% | |
| CAGGAACCACCAGCCATTCT+GGG | - | chr3_1:91071972-91071991 | None:intergenic | 55.0% | |
| TCAGGAACCACCAGCCATTC+TGG | - | chr3_1:91071973-91071992 | None:intergenic | 55.0% | |
| TGCCAATTGCTCCATCCCAG+TGG | + | chr3_1:91072335-91072354 | Msa0387160:CDS | 55.0% | |
| AGCCACTGGGATGGAGCAAT+TGG | - | chr3_1:91072340-91072359 | None:intergenic | 55.0% | |
| TGCATAGGTAGCCACTGGGA+TGG | - | chr3_1:91072349-91072368 | None:intergenic | 55.0% | |
| CTTCCGGTTGTTCAATCCGC+AGG | - | chr3_1:91072414-91072433 | None:intergenic | 55.0% | |
| ! | GCGGATTGAACAACCGGAAG+TGG | + | chr3_1:91072414-91072433 | Msa0387160:exon | 55.0% |
| GGAGAAGAGCGAAACGACGC+TGG | + | chr3_1:91067003-91067022 | Msa0387160:CDS | 60.0% | |
| TTGGATTTCGCCGCCGCATG+TGG | + | chr3_1:91067055-91067074 | Msa0387160:CDS | 60.0% | |
| GTACGACGGACCTCCACATG+CGG | - | chr3_1:91067071-91067090 | None:intergenic | 60.0% | |
| TGTGACAGTGACTGCGGCGT+CGG | - | chr3_1:91067109-91067128 | None:intergenic | 60.0% | |
| ! | CGGTGTCGGAGGTCGTAGAA+TGG | - | chr3_1:91067134-91067153 | None:intergenic | 60.0% |
| TCTACGACCTCCGACACCGT+CGG | + | chr3_1:91067135-91067154 | Msa0387160:CDS | 60.0% | |
| GGAGGCAAATCCGACGGTGT+CGG | - | chr3_1:91067148-91067167 | None:intergenic | 60.0% | |
| ACCGTCGGATTTGCCTCCTC+CGG | + | chr3_1:91067150-91067169 | Msa0387160:CDS | 60.0% | |
| TGTTTCCACGGCCGTCTCAC+TGG | - | chr3_1:91067202-91067221 | None:intergenic | 60.0% | |
| GTTCTCTGCTGCTGCCACTG+TGG | - | chr3_1:91067232-91067251 | None:intergenic | 60.0% | |
| GAGAACGTCACAGTCTCCGC+CGG | + | chr3_1:91067246-91067265 | Msa0387160:CDS | 60.0% | |
| CTCACGGGGCCACTTGTGTA+TGG | - | chr3_1:91067514-91067533 | None:intergenic | 60.0% | |
| TGGCCCCGTGAGCTTAGCTT+TGG | + | chr3_1:91067522-91067541 | Msa0387160:intron | 60.0% | |
| GACGGTTGAGCTAGGACCTG+TGG | + | chr3_1:91067684-91067703 | Msa0387160:intron | 60.0% | |
| CAATGAGGCTGCCCGAAAGG+AGG | + | chr3_1:91068822-91068841 | Msa0387160:CDS | 60.0% | |
| GCTGCCCGAAAGGAGGCAAT+TGG | + | chr3_1:91068829-91068848 | Msa0387160:CDS | 60.0% | |
| CAGAGCAGAGGACGTTGGCA+TGG | - | chr3_1:91069168-91069187 | None:intergenic | 60.0% | |
| GGACTTGGACCCTCCATCTC+TGG | + | chr3_1:91069313-91069332 | Msa0387160:CDS | 60.0% | |
| CGGTGAATCCACCGTGGGAG+TGG | - | chr3_1:91066674-91066693 | None:intergenic | 65.0% | |
| TGACGGCGGAGAACGATCGC+CGG | - | chr3_1:91066708-91066727 | None:intergenic | 65.0% | |
| GATTTCGCCGCCGCATGTGG+AGG | + | chr3_1:91067058-91067077 | Msa0387160:CDS | 65.0% | |
| ! | GCGTCGGTGGCGACAATGTC+AGG | - | chr3_1:91067093-91067112 | None:intergenic | 65.0% |
| ! | GGCAAATCCGACGGTGTCGG+AGG | - | chr3_1:91067145-91067164 | None:intergenic | 65.0% |
| GCCGGAGGAGGCAAATCCGA+CGG | - | chr3_1:91067154-91067173 | None:intergenic | 65.0% | |
| AGTCACCAGTGAGACGGCCG+TGG | + | chr3_1:91067194-91067213 | Msa0387160:CDS | 65.0% | |
| CTCTGCTGCTGCCACTGTGG+TGG | - | chr3_1:91067229-91067248 | None:intergenic | 65.0% | |
| CGACGGACCTCCACATGCGG+CGG | - | chr3_1:91067068-91067087 | None:intergenic | 70.0% | |
| ! | GACAGTGACTGCGGCGTCGG+TGG | - | chr3_1:91067106-91067125 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91066664 | 91072964 | 91066664 | ID=Msa0387160;Name=Msa0387160 |
| chr3_1 | mRNA | 91066664 | 91072964 | 91066664 | ID=Msa0387160-mRNA-1;Parent=Msa0387160;Name=Msa0387160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=203|1|0.88|1|0.87|0.77|9|542|596 |
| chr3_1 | exon | 91066664 | 91066848 | 91066664 | ID=Msa0387160-mRNA-1:exon:25281;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91066983 | 91067368 | 91066983 | ID=Msa0387160-mRNA-1:exon:25282;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91068537 | 91068647 | 91068537 | ID=Msa0387160-mRNA-1:exon:25283;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91068750 | 91068927 | 91068750 | ID=Msa0387160-mRNA-1:exon:25284;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91069076 | 91069432 | 91069076 | ID=Msa0387160-mRNA-1:exon:25285;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91069750 | 91069841 | 91069750 | ID=Msa0387160-mRNA-1:exon:25286;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91069940 | 91070034 | 91069940 | ID=Msa0387160-mRNA-1:exon:25287;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91070310 | 91070702 | 91070310 | ID=Msa0387160-mRNA-1:exon:25288;Parent=Msa0387160-mRNA-1 |
| chr3_1 | exon | 91072226 | 91072964 | 91072226 | ID=Msa0387160-mRNA-1:exon:25289;Parent=Msa0387160-mRNA-1 |
| chr3_1 | five_prime_UTR | 91066664 | 91066848 | 91066664 | ID=Msa0387160-mRNA-1:five_prime_utr;Parent=Msa0387160-mRNA-1 |
| chr3_1 | five_prime_UTR | 91066983 | 91067000 | 91066983 | ID=Msa0387160-mRNA-1:five_prime_utr;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91067001 | 91067368 | 91067001 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91068537 | 91068647 | 91068537 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91068750 | 91068927 | 91068750 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91069076 | 91069432 | 91069076 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91069750 | 91069841 | 91069750 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91069940 | 91070034 | 91069940 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91070310 | 91070702 | 91070310 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | CDS | 91072226 | 91072422 | 91072226 | ID=Msa0387160-mRNA-1:cds;Parent=Msa0387160-mRNA-1 |
| chr3_1 | three_prime_UTR | 91072423 | 91072964 | 91072423 | ID=Msa0387160-mRNA-1:three_prime_utr;Parent=Msa0387160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
