Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581890 | XP_024634048.1 | 96.141 | 596 | 22 | 1 | 1 | 596 | 1 | 595 | 0.0 | 1141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581890 | sp|Q9SZD1|TCX5_ARATH | 40.433 | 554 | 243 | 18 | 13 | 533 | 24 | 523 | 4.15e-111 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581890 | A0A072V2F6 | 91.973 | 598 | 44 | 4 | 1 | 596 | 1 | 596 | 0.0 | 1096 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0581890 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387160 | Msa0581890 | 0.871562 | 6.218509e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581890 | MtrunA17_Chr3g0139951 | 97.000 | 400 | 12 | 0 | 1 | 400 | 1 | 400 | 0.0 | 806 |
| Msa0581890 | MtrunA17_Chr6g0485811 | 45.376 | 465 | 225 | 10 | 125 | 570 | 107 | 561 | 8.73e-117 | 360 |
| Msa0581890 | MtrunA17_Chr8g0390351 | 44.662 | 459 | 228 | 11 | 109 | 549 | 44 | 494 | 4.18e-114 | 352 |
| Msa0581890 | MtrunA17_Chr3g0139941 | 78.462 | 195 | 9 | 2 | 402 | 596 | 1 | 162 | 1.33e-98 | 297 |
| Msa0581890 | MtrunA17_Chr1g0149101 | 44.604 | 139 | 73 | 4 | 148 | 282 | 498 | 636 | 1.17e-28 | 121 |
| Msa0581890 | MtrunA17_Chr5g0394661 | 48.800 | 125 | 60 | 4 | 148 | 269 | 488 | 611 | 4.44e-27 | 116 |
| Msa0581890 | MtrunA17_Chr1g0205031 | 36.719 | 128 | 68 | 5 | 143 | 267 | 409 | 526 | 7.07e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581890 | AT4G29000.1 | 40.433 | 554 | 243 | 18 | 13 | 533 | 24 | 523 | 4.22e-112 | 348 |
| Msa0581890 | AT2G20110.3 | 40.883 | 521 | 247 | 14 | 84 | 590 | 66 | 539 | 1.58e-105 | 329 |
| Msa0581890 | AT2G20110.1 | 41.352 | 503 | 240 | 13 | 84 | 572 | 66 | 527 | 1.01e-104 | 328 |
| Msa0581890 | AT2G20110.2 | 40.588 | 510 | 241 | 13 | 84 | 572 | 66 | 534 | 9.09e-103 | 323 |
| Msa0581890 | AT5G25790.1 | 36.722 | 482 | 248 | 15 | 49 | 524 | 11 | 441 | 1.06e-82 | 267 |
| Msa0581890 | AT5G25790.2 | 35.714 | 504 | 267 | 15 | 49 | 546 | 11 | 463 | 1.90e-82 | 268 |
| Msa0581890 | AT5G25790.3 | 36.515 | 482 | 245 | 16 | 49 | 524 | 11 | 437 | 4.08e-82 | 265 |
| Msa0581890 | AT3G16160.1 | 44.737 | 152 | 80 | 2 | 116 | 266 | 34 | 182 | 3.13e-32 | 128 |
| Msa0581890 | AT3G22760.2 | 41.401 | 157 | 87 | 3 | 126 | 280 | 186 | 339 | 1.51e-28 | 119 |
| Msa0581890 | AT3G22760.1 | 41.401 | 157 | 87 | 3 | 126 | 280 | 309 | 462 | 2.27e-28 | 120 |
| Msa0581890 | AT4G14770.1 | 46.774 | 124 | 64 | 2 | 148 | 269 | 375 | 498 | 4.76e-28 | 119 |
| Msa0581890 | AT4G14770.2 | 46.774 | 124 | 64 | 2 | 148 | 269 | 355 | 478 | 7.12e-28 | 119 |
| Msa0581890 | AT4G14770.3 | 46.774 | 124 | 64 | 2 | 148 | 269 | 356 | 479 | 7.14e-28 | 119 |
| Msa0581890 | AT3G22780.1 | 42.029 | 138 | 78 | 2 | 148 | 283 | 401 | 538 | 1.04e-27 | 119 |
| Msa0581890 | AT3G04850.1 | 45.968 | 124 | 65 | 2 | 148 | 269 | 453 | 576 | 5.44e-27 | 116 |
Find 176 sgRNAs with CRISPR-Local
Find 414 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCAATTTAAGTGTTTC+TGG | 0.101248 | 4_1:+87401613 | None:intergenic |
| GCTAAAGTACTTACAATTTA+AGG | 0.107021 | 4_1:+87403460 | None:intergenic |
| TTCTCTTCTTGGGTGTTATA+TGG | 0.169921 | 4_1:+87402760 | None:intergenic |
| ATTATTATTGGTAGCATTAA+AGG | 0.183098 | 4_1:-87401418 | Msa0581890:intron |
| CATTCCAATTGCCTCCTTTC+GGG | 0.215507 | 4_1:+87403266 | None:intergenic |
| ATACGAGTTTAAACATTAAA+TGG | 0.240463 | 4_1:-87399158 | Msa0581890:three_prime_UTR |
| ATTTGTCTTTGCAGCTTCTT+TGG | 0.243681 | 4_1:+87402091 | None:intergenic |
| GCAACTAATGCTGCCATTAA+TGG | 0.244194 | 4_1:-87402816 | Msa0581890:CDS |
| TCAAAATAAAGCAGGGTTAA+AGG | 0.248253 | 4_1:-87403532 | Msa0581890:CDS |
| CATGCAGAGAATGGAATTTC+CGG | 0.278353 | 4_1:+87405361 | None:intergenic |
| TACTTACAATTTAAGGCATT+TGG | 0.284828 | 4_1:+87403467 | None:intergenic |
| TCTCTTCTTGGGTGTTATAT+GGG | 0.286069 | 4_1:+87402761 | None:intergenic |
| CTTGTGTATCTTCAAGTTGA+TGG | 0.295690 | 4_1:-87399186 | Msa0581890:three_prime_UTR |
| GACAAATATTTGAAAGAGAT+TGG | 0.295940 | 4_1:+87399482 | None:intergenic |
| AAAATCACATACCTGAATTT+AGG | 0.297536 | 4_1:+87402268 | None:intergenic |
| CTTGGTGAACTGATTATTAT+TGG | 0.298905 | 4_1:-87401430 | Msa0581890:CDS |
| TCATTCCAATTGCCTCCTTT+CGG | 0.299863 | 4_1:+87403265 | None:intergenic |
| AAGTCCAACTGCTCCATTAA+TGG | 0.310344 | 4_1:+87402803 | None:intergenic |
| TTGATATTGACATTCATAAT+AGG | 0.314713 | 4_1:-87401645 | Msa0581890:CDS |
| TAGTGACCTTACTTGTATAT+TGG | 0.319714 | 4_1:-87399582 | Msa0581890:three_prime_UTR |
| GTGTCTGAAATTCAATTAAT+AGG | 0.329611 | 4_1:-87403017 | Msa0581890:CDS |
| GGCTTATCCTGACCAAGTTC+AGG | 0.337443 | 4_1:-87401459 | Msa0581890:CDS |
| TCGGAAATTTGCGCGGCAAT+TGG | 0.338947 | 4_1:-87405068 | Msa0581890:CDS |
| TTGACTCAACTGCATGTAAC+TGG | 0.341419 | 4_1:-87399443 | Msa0581890:three_prime_UTR |
| ATCTCTTTCAAATATTTGTC+TGG | 0.342016 | 4_1:-87399479 | Msa0581890:three_prime_UTR |
| TCCTCCGGCGCAAATGCATT+TGG | 0.349311 | 4_1:-87404939 | Msa0581890:CDS |
| TCAGTCCTGTCAAAAGAAAA+AGG | 0.352955 | 4_1:+87399627 | None:intergenic |
| AATAGAAGCTTCATATTTCT+CGG | 0.353823 | 4_1:+87401756 | None:intergenic |
| CTACTAACCATAGAAACTTC+TGG | 0.357925 | 4_1:+87403186 | None:intergenic |
| GCCTTACAGCGGCTATATTT+CGG | 0.369174 | 4_1:+87399282 | None:intergenic |
| TTTGCATGATTCTCCGAAAC+AGG | 0.382385 | 4_1:+87401688 | None:intergenic |
| ACCAAGTTCAGGGATGTTCT+TGG | 0.382968 | 4_1:-87401448 | Msa0581890:CDS |
| AACCTCTTCACCGGAAGCTT+TGG | 0.384541 | 4_1:+87404767 | None:intergenic |
| AGATGTTGCCAAGCCTGTTT+CGG | 0.392240 | 4_1:-87401701 | Msa0581890:CDS |
| TTCGGTAATGGTTCTGCAAA+TGG | 0.394963 | 4_1:-87401568 | Msa0581890:CDS |
| AACACTCACAATACTTCTTA+AGG | 0.401328 | 4_1:+87402958 | None:intergenic |
| TTTAAACATTAAATGGTGAT+TGG | 0.402292 | 4_1:-87399151 | Msa0581890:three_prime_UTR |
| TTAATAGGAAGGCACAATAA+AGG | 0.404131 | 4_1:-87403002 | Msa0581890:CDS |
| TAATTTCAAGACCTAAATTC+AGG | 0.410173 | 4_1:-87402279 | Msa0581890:intron |
| GCGTCGGTGGCGACAATGTC+AGG | 0.412454 | 4_1:+87405014 | None:intergenic |
| TGTTTCCACGGCCGTCTCAC+TGG | 0.412786 | 4_1:+87404905 | None:intergenic |
| AACAACCGGAAGTGGTAATC+TGG | 0.413771 | 4_1:-87399667 | Msa0581890:three_prime_UTR |
| GGACTTGGACCCTCCATCTC+TGG | 0.418333 | 4_1:-87402786 | Msa0581890:CDS |
| ATTAATGGAGCAGTTGGACT+TGG | 0.419842 | 4_1:-87402801 | Msa0581890:CDS |
| GCTACCTATGCAAGAACTAA+TGG | 0.420530 | 4_1:-87399732 | Msa0581890:CDS |
| TAAATTGATGTGTGATGAAC+AGG | 0.421391 | 4_1:-87401602 | Msa0581890:CDS |
| AGCCACTGGGATGGAGCAAT+TGG | 0.435821 | 4_1:+87399752 | None:intergenic |
| ACAAATATTTGAAAGAGATT+GGG | 0.436504 | 4_1:+87399483 | None:intergenic |
| TCATGTCGGAATTCAACATC+AGG | 0.437658 | 4_1:-87399235 | Msa0581890:three_prime_UTR |
| TTAACTCCAATATACAAGTA+AGG | 0.446671 | 4_1:+87399576 | None:intergenic |
| AACATTAAATGGTGATTGGT+GGG | 0.447498 | 4_1:-87399147 | None:intergenic |
| AGACGAAAACATGCAGAGAA+TGG | 0.447595 | 4_1:+87405352 | None:intergenic |
| GTACTCCACACCAAAGCTTC+CGG | 0.447922 | 4_1:-87404777 | Msa0581890:CDS |
| TACTGTGAGTGCTATGCAGC+TGG | 0.448205 | 4_1:-87403348 | Msa0581890:CDS |
| AAAGGAAGCTGACAGGGATA+AGG | 0.448296 | 4_1:+87402324 | None:intergenic |
| ACATGAGCAGCATCACTTAC+GGG | 0.448758 | 4_1:+87399526 | None:intergenic |
| CACATGAGCAGCATCACTTA+CGG | 0.452805 | 4_1:+87399525 | None:intergenic |
| TGTATATTGGAGTTAAGAAA+AGG | 0.456535 | 4_1:-87399569 | Msa0581890:three_prime_UTR |
| TTGCCTGCGGATTGAACAAC+CGG | 0.458472 | 4_1:-87399681 | Msa0581890:exon |
| TTCAAATTTCCAGAAATGAG+AGG | 0.459036 | 4_1:-87401802 | Msa0581890:intron |
| CATGACTGCTCAACACCAAC+AGG | 0.463692 | 4_1:-87402688 | Msa0581890:intron |
| GGTTTAAGAAGAAACGTTGA+TGG | 0.467781 | 4_1:-87405122 | Msa0581890:exon |
| ACCAAGAACATCCCTGAACT+TGG | 0.469962 | 4_1:+87401447 | None:intergenic |
| ATACACCAGATTACCACTTC+CGG | 0.470900 | 4_1:+87399662 | None:intergenic |
| TGATAGTGGTGCTGAAACTA+AGG | 0.471033 | 4_1:-87399799 | Msa0581890:CDS |
| CACTGCTGTTTATGCAGAGC+AGG | 0.471249 | 4_1:-87401485 | Msa0581890:CDS |
| CTGTTTATGCAGAGCAGGAA+AGG | 0.476553 | 4_1:-87401480 | Msa0581890:CDS |
| GAAACTTTACCTATGCGTTA+CGG | 0.476869 | 4_1:+87405268 | None:intergenic |
| AAGGAAGCTGACAGGGATAA+GGG | 0.478405 | 4_1:+87402325 | None:intergenic |
| TCACAGCCTCAAAATAAAGC+AGG | 0.479128 | 4_1:-87403540 | Msa0581890:CDS |
| GCTGCCCGAAAGGAGGCAAT+TGG | 0.479529 | 4_1:-87403270 | Msa0581890:CDS |
| GTTCTTGCATAGGTAGCCAC+TGG | 0.479534 | 4_1:+87399738 | None:intergenic |
| GATAAGGGAGATGAAGCTAT+AGG | 0.479560 | 4_1:+87402340 | None:intergenic |
| GAACATCCCTGAACTTGGTC+AGG | 0.480468 | 4_1:+87401452 | None:intergenic |
| CGGTGAATCCACCGTGGGAG+TGG | 0.486136 | 4_1:+87405433 | None:intergenic |
| AAACATTAAATGGTGATTGG+TGG | 0.492778 | 4_1:-87399148 | Msa0581890:three_prime_UTR |
| GATTGAAAATGCGGCATCAC+CGG | 0.492928 | 4_1:+87404839 | None:intergenic |
| GGAGAAGAGCGAAACGACGC+TGG | 0.493971 | 4_1:-87405101 | Msa0581890:CDS |
| CGGAAACAAAGGAAGCTGAC+AGG | 0.494375 | 4_1:+87402317 | None:intergenic |
| TGTTATATGGGTTCCAGAGA+TGG | 0.499612 | 4_1:+87402773 | None:intergenic |
| TGAGGCTGTGATCTAGGGCT+AGG | 0.501431 | 4_1:+87403552 | None:intergenic |
| TCCGAAATATAGCCGCTGTA+AGG | 0.504333 | 4_1:-87399283 | Msa0581890:three_prime_UTR |
| CGACGCTGGATTTAGCTAAT+CGG | 0.509373 | 4_1:-87405087 | Msa0581890:CDS |
| AAAGGATGTCACTGCAAGAA+AGG | 0.510127 | 4_1:-87402984 | Msa0581890:CDS |
| TTGGATTTCGCCGCCGCATG+TGG | 0.510164 | 4_1:-87405049 | Msa0581890:CDS |
| CTTCCGGTTGTTCAATCCGC+AGG | 0.513069 | 4_1:+87399678 | None:intergenic |
| ATCGAAACTAACTGCGGGCG+CGG | 0.513160 | 4_1:+87404815 | None:intergenic |
| TCAAATTTCCAGAAATGAGA+GGG | 0.516415 | 4_1:-87401801 | Msa0581890:intron |
| CTGAAATTCAATTAATAGGA+AGG | 0.519135 | 4_1:-87403013 | Msa0581890:CDS |
| GCTTATCCTGACCAAGTTCA+GGG | 0.520596 | 4_1:-87401458 | Msa0581890:CDS |
| CAAAAGTCTTCCAACTCTGA+TGG | 0.520619 | 4_1:-87401511 | Msa0581890:CDS |
| ATGATTCTCCGAAACAGGCT+TGG | 0.524373 | 4_1:+87401693 | None:intergenic |
| GCGGATTGAACAACCGGAAG+TGG | 0.525965 | 4_1:-87399675 | Msa0581890:exon |
| AAATGCATTTGCGCCGGAGG+AGG | 0.526333 | 4_1:+87404941 | None:intergenic |
| GCTGCCATTAATGGAGCAGT+TGG | 0.529615 | 4_1:-87402807 | Msa0581890:CDS |
| CAGAGCAGAGGACGTTGGCA+TGG | 0.529760 | 4_1:+87402934 | None:intergenic |
| AGTCACCAGTGAGACGGCCG+TGG | 0.538539 | 4_1:-87404910 | Msa0581890:CDS |
| CACCAAAGCTTCCGGTGAAG+AGG | 0.538599 | 4_1:-87404769 | Msa0581890:CDS |
| GAAGCTGCAAAGACAAATGC+AGG | 0.539292 | 4_1:-87402086 | Msa0581890:intron |
| TGTGACAGTGACTGCGGCGT+CGG | 0.541888 | 4_1:+87404998 | None:intergenic |
| TGTGGTGGTGATTGTTTCCA+CGG | 0.542299 | 4_1:+87404893 | None:intergenic |
| AGCGCTTGAAACCTCTTCAC+CGG | 0.544016 | 4_1:+87404758 | None:intergenic |
| TTCATGTTGAAGGTCTGTGT+TGG | 0.547492 | 4_1:-87402171 | Msa0581890:intron |
| GGAAGCTTTGGTGTGGAGTA+CGG | 0.547715 | 4_1:+87404779 | None:intergenic |
| TCCAAATGCATTTGCGCCGG+AGG | 0.550391 | 4_1:+87404938 | None:intergenic |
| CTCTGCTGCTGCCACTGTGG+TGG | 0.557444 | 4_1:+87404878 | None:intergenic |
| ACCGTCGGATTTGCCTCCTC+CGG | 0.560178 | 4_1:-87404954 | Msa0581890:CDS |
| GGAGGCAAATCCGACGGTGT+CGG | 0.562332 | 4_1:+87404959 | None:intergenic |
| TCTGTGTCCATGCCAAGACT+TGG | 0.562400 | 4_1:+87399397 | None:intergenic |
| ATAGGCAGTGTCGGAAACAA+AGG | 0.562595 | 4_1:+87402306 | None:intergenic |
| TGACGTTGATAACCAAGTCT+TGG | 0.567234 | 4_1:-87399409 | Msa0581890:three_prime_UTR |
| GAACAATGAGGCTGCCCGAA+AGG | 0.567258 | 4_1:-87403280 | Msa0581890:CDS |
| GAATCATCGAAACTAACTGC+GGG | 0.568372 | 4_1:+87404810 | None:intergenic |
| TGCATAGGTAGCCACTGGGA+TGG | 0.569627 | 4_1:+87399743 | None:intergenic |
| ATGTCCATTAGTTCTTGCAT+AGG | 0.570734 | 4_1:+87399728 | None:intergenic |
| GATTTCGCCGCCGCATGTGG+AGG | 0.572850 | 4_1:-87405046 | Msa0581890:CDS |
| AAATGAGAGGGAAAGCTGCT+AGG | 0.574833 | 4_1:-87401789 | Msa0581890:CDS |
| CGGTGTCGGAGGTCGTAGAA+TGG | 0.576418 | 4_1:+87404973 | None:intergenic |
| AGCAGTGTATCCATCAGAGT+TGG | 0.576661 | 4_1:+87401501 | None:intergenic |
| TAGTCTAGTTCAAATCAGAC+AGG | 0.581100 | 4_1:-87402838 | Msa0581890:CDS |
| ACATTAAATGGTGATTGGTG+GGG | 0.582688 | 4_1:-87399146 | None:intergenic |
| TTAAGTGTTTCTGGTGACAG+TGG | 0.589606 | 4_1:+87401622 | None:intergenic |
| GGAGGCAATTGGAATGACAC+TGG | 0.589713 | 4_1:-87403259 | Msa0581890:CDS |
| TGACGGCGGAGAACGATCGC+CGG | 0.591548 | 4_1:+87405399 | None:intergenic |
| GACAGTGACTGCGGCGTCGG+TGG | 0.593114 | 4_1:+87405001 | None:intergenic |
| AAATCCAAATGCATTTGCGC+CGG | 0.594109 | 4_1:+87404935 | None:intergenic |
| CTTCACCGGAAGCTTTGGTG+TGG | 0.594505 | 4_1:+87404772 | None:intergenic |
| AATATACAAGTAAGGTCACT+AGG | 0.594858 | 4_1:+87399584 | None:intergenic |
| CAATGAGGCTGCCCGAAAGG+AGG | 0.594923 | 4_1:-87403277 | Msa0581890:CDS |
| AATTACAATCCGTAACGCAT+AGG | 0.598835 | 4_1:-87405277 | Msa0581890:intron |
| CACAGCCTCAAAATAAAGCA+GGG | 0.602704 | 4_1:-87403539 | Msa0581890:CDS |
| TTGATAACCAAGTCTTGGCA+TGG | 0.605161 | 4_1:-87399404 | Msa0581890:three_prime_UTR |
| GGAAACAAAGGAAGCTGACA+GGG | 0.605542 | 4_1:+87402318 | None:intergenic |
| GGCAAATCCGACGGTGTCGG+AGG | 0.608094 | 4_1:+87404962 | None:intergenic |
| TATATGGGTTCCAGAGATGG+AGG | 0.609649 | 4_1:+87402776 | None:intergenic |
| GCAGCTGGGATCTATTGTGA+TGG | 0.610068 | 4_1:-87403333 | Msa0581890:CDS |
| GAGAACGTCACAGTCTCCGC+CGG | 0.610187 | 4_1:-87404858 | Msa0581890:CDS |
| GGGCGCGGTGATTGAAAATG+CGG | 0.613912 | 4_1:+87404830 | None:intergenic |
| GGTTATCAACGTCACTAGAG+AGG | 0.616925 | 4_1:+87399418 | None:intergenic |
| TCTTTCGTTGAGGTTGCCTG+CGG | 0.618808 | 4_1:-87399694 | Msa0581890:CDS |
| ACTGTGAGTGCTATGCAGCT+GGG | 0.620605 | 4_1:-87403347 | Msa0581890:CDS |
| TGTTGCGGTGAATCCACCGT+GGG | 0.620785 | 4_1:+87405428 | None:intergenic |
| TGATGTGTGATGAACAGGAT+GGG | 0.620967 | 4_1:-87401597 | Msa0581890:CDS |
| ATTCACCGCAACAAACTCTC+CGG | 0.623378 | 4_1:-87405418 | Msa0581890:five_prime_UTR |
| ACATTCATATCATTTCATGT+CGG | 0.629473 | 4_1:-87399249 | Msa0581890:three_prime_UTR |
| ATACTACTGATCTTTCGTTG+AGG | 0.630168 | 4_1:-87399704 | Msa0581890:CDS |
| GTCAATCTTTCTCGTCACAC+CGG | 0.633035 | 4_1:-87405380 | Msa0581890:five_prime_UTR |
| TTCTTGCATAGGTAGCCACT+GGG | 0.635007 | 4_1:+87399739 | None:intergenic |
| ATGTGCATATAGTTAGATGT+TGG | 0.637325 | 4_1:-87399507 | Msa0581890:three_prime_UTR |
| TCATAATAATCTGAACAATG+AGG | 0.638704 | 4_1:-87403292 | Msa0581890:CDS |
| GGTGTGACGAGAAAGATTGA+CGG | 0.639361 | 4_1:+87405382 | None:intergenic |
| TGAAAATGCGGCATCACCGG+CGG | 0.641386 | 4_1:+87404842 | None:intergenic |
| GGCGACAATGTCAGGTACGA+CGG | 0.643457 | 4_1:+87405022 | None:intergenic |
| GGACTGAATTTGGATTGTGA+AGG | 0.643904 | 4_1:-87399611 | Msa0581890:three_prime_UTR |
| CATGTCGGAATTCAACATCA+GGG | 0.644683 | 4_1:-87399234 | Msa0581890:three_prime_UTR |
| GCCGGAGGAGGCAAATCCGA+CGG | 0.645977 | 4_1:+87404953 | None:intergenic |
| TCACTCACAGATCAAACTGT+CGG | 0.650466 | 4_1:-87402711 | Msa0581890:CDS |
| ATATGGGTTCCAGAGATGGA+GGG | 0.670217 | 4_1:+87402777 | None:intergenic |
| TCTACGACCTCCGACACCGT+CGG | 0.672076 | 4_1:-87404969 | Msa0581890:CDS |
| TTGATGTGTGATGAACAGGA+TGG | 0.672796 | 4_1:-87401598 | Msa0581890:CDS |
| GTTCTCTGCTGCTGCCACTG+TGG | 0.675511 | 4_1:+87404875 | None:intergenic |
| TAGCTAATCGGAAATTTGCG+CGG | 0.681451 | 4_1:-87405075 | Msa0581890:CDS |
| TGAGTACATGTGCCTTACAG+CGG | 0.681488 | 4_1:+87399271 | None:intergenic |
| CGACGGACCTCCACATGCGG+CGG | 0.682146 | 4_1:+87405039 | None:intergenic |
| GTACGACGGACCTCCACATG+CGG | 0.684282 | 4_1:+87405036 | None:intergenic |
| GATCGCCGGAGAGTTTGTTG+CGG | 0.684618 | 4_1:+87405413 | None:intergenic |
| AGTGACGCTAACCACTCCCA+CGG | 0.685743 | 4_1:-87405444 | None:intergenic |
| TGCCAATTGCTCCATCCCAG+TGG | 0.687073 | 4_1:-87399754 | Msa0581890:CDS |
| GATAGTGGTGCTGAAACTAA+GGG | 0.691174 | 4_1:-87399798 | Msa0581890:CDS |
| TTGTTGCGGTGAATCCACCG+TGG | 0.703380 | 4_1:+87405427 | None:intergenic |
| GACGCTAACCACTCCCACGG+TGG | 0.704189 | 4_1:-87405441 | Msa0581890:five_prime_UTR |
| TTCTTGAAGCAAGAAATCGA+CGG | 0.709627 | 4_1:+87405298 | None:intergenic |
| TGAATCATCGAAACTAACTG+CGG | 0.719757 | 4_1:+87404809 | None:intergenic |
| GTGACGAGAAAGATTGACGG+CGG | 0.725574 | 4_1:+87405385 | None:intergenic |
| ATGGTTTGTGACAGTGACTG+CGG | 0.730603 | 4_1:+87404992 | None:intergenic |
| GGAAACAATCACCACCACAG+TGG | 0.761756 | 4_1:-87404889 | Msa0581890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAACTAATAAGATT+TGG | + | chr4_1:87400812-87400831 | None:intergenic | 10.0% |
| !!! | ATCTTATTAGTTTTTATAAA+AGG | - | chr4_1:87400813-87400832 | Msa0581890:intron | 10.0% |
| !! | TAAAAGATATTAATTACAAT+CGG | + | chr4_1:87402197-87402216 | None:intergenic | 10.0% |
| !! | ATATGAATATAAAAAAAAAC+CGG | - | chr4_1:87402382-87402401 | Msa0581890:intron | 10.0% |
| !!! | CTCTTTAAAATTTATAATTT+AGG | + | chr4_1:87404204-87404223 | None:intergenic | 10.0% |
| !!! | TGTTGCATTTTATTTATTTT+TGG | - | chr4_1:87399944-87399963 | Msa0581890:intron | 15.0% |
| !!! | ATTTTAGTATTAGAAACATA+AGG | - | chr4_1:87400444-87400463 | Msa0581890:intron | 15.0% |
| !!! | AATGAATTATTGACTTAAAT+TGG | + | chr4_1:87400628-87400647 | None:intergenic | 15.0% |
| !!! | AATGATCAGTATATTTTTAT+TGG | + | chr4_1:87400861-87400880 | None:intergenic | 15.0% |
| !!! | TATTGATAGCTAAATTAATA+GGG | + | chr4_1:87402150-87402169 | None:intergenic | 15.0% |
| !!! | ATATTGATAGCTAAATTAAT+AGG | + | chr4_1:87402151-87402170 | None:intergenic | 15.0% |
| !! | TATTAATTTAATCGTCATTA+AGG | + | chr4_1:87404364-87404383 | None:intergenic | 15.0% |
| !! | GACGATTAAATTAATAAAAA+TGG | - | chr4_1:87404368-87404387 | Msa0581890:intron | 15.0% |
| !!! | AAAAATTAAAGCTACTTTTA+GGG | + | chr4_1:87404571-87404590 | None:intergenic | 15.0% |
| !!! | AAAAAATTAAAGCTACTTTT+AGG | + | chr4_1:87404572-87404591 | None:intergenic | 15.0% |
| !!! | GGTGTTTTTTTTTTTTTTTG+TGG | + | chr4_1:87400085-87400104 | None:intergenic | 20.0% |
| !!! | CAAAGTTCTATTTTTAAACA+TGG | + | chr4_1:87400684-87400703 | None:intergenic | 20.0% |
| !!! | TTTGTTAATGATTGCATTTT+TGG | - | chr4_1:87400744-87400763 | Msa0581890:intron | 20.0% |
| !!! | TTGTTAATGATTGCATTTTT+GGG | - | chr4_1:87400745-87400764 | Msa0581890:intron | 20.0% |
| !!! | ATATTTTTATTGGCAAGTTT+AGG | + | chr4_1:87400851-87400870 | None:intergenic | 20.0% |
| !!! | CTGTCCATTTATATTTTATA+CGG | - | chr4_1:87400885-87400904 | Msa0581890:intron | 20.0% |
| !! | AAATCAATGTGAAACTAATA+AGG | - | chr4_1:87402028-87402047 | Msa0581890:intron | 20.0% |
| !!! | AGGTCTTGAAATTATTTTAT+AGG | + | chr4_1:87402303-87402322 | None:intergenic | 20.0% |
| !!! | GTGATTTTTTTTCAATCATT+AGG | - | chr4_1:87402335-87402354 | Msa0581890:CDS | 20.0% |
| !! | ACATGAAATATTGTTAATTC+CGG | + | chr4_1:87402404-87402423 | None:intergenic | 20.0% |
| !! | TTAACAATATTTCATGTTGA+AGG | - | chr4_1:87402407-87402426 | Msa0581890:intron | 20.0% |
| !! | TTGATATTGACATTCATAAT+AGG | - | chr4_1:87402943-87402962 | Msa0581890:CDS | 20.0% |
| !!! | ATTATTATTGGTAGCATTAA+AGG | - | chr4_1:87403170-87403189 | Msa0581890:intron | 20.0% |
| !! | TGAAAAATACTTGATTCAAA+TGG | - | chr4_1:87403329-87403348 | Msa0581890:CDS | 20.0% |
| !! | GAAAAATACTTGATTCAAAT+GGG | - | chr4_1:87403330-87403349 | Msa0581890:CDS | 20.0% |
| !! | ATAGATTTCTTGCTTTATAT+CGG | - | chr4_1:87403390-87403409 | Msa0581890:intron | 20.0% |
| !!! | TTTTGATATCGATAATTTTG+AGG | + | chr4_1:87403848-87403867 | None:intergenic | 20.0% |
| !! | TCAAAAACAAAGCAAAAAAA+TGG | + | chr4_1:87404036-87404055 | None:intergenic | 20.0% |
| !! | TGAGGAAATAAAAAAAATTC+AGG | + | chr4_1:87404490-87404509 | None:intergenic | 20.0% |
| !! | TATAGTATCAATCAAACATA+TGG | + | chr4_1:87404525-87404544 | None:intergenic | 20.0% |
| !! | TTCTTAATATAGAAGTTTGA+TGG | + | chr4_1:87404653-87404672 | None:intergenic | 20.0% |
| !! | ACAAATATTTGAAAGAGATT+GGG | + | chr4_1:87405108-87405127 | None:intergenic | 20.0% |
| !! | ATACGAGTTTAAACATTAAA+TGG | - | chr4_1:87405430-87405449 | Msa0581890:five_prime_UTR | 20.0% |
| !! | TTTAAACATTAAATGGTGAT+TGG | - | chr4_1:87405437-87405456 | Msa0581890:five_prime_UTR | 20.0% |
| ! | TTTGAAAACTCAATTCGAAA+CGG | - | chr4_1:87399359-87399378 | Msa0581890:three_prime_UTR | 25.0% |
| ! | AAATAAAATGCAACACATTC+AGG | + | chr4_1:87399939-87399958 | None:intergenic | 25.0% |
| ! | ATGATAAGAATGTTAGTGTA+TGG | - | chr4_1:87400216-87400235 | Msa0581890:intron | 25.0% |
| !! | CATAATTTAGAATGCAGAAT+TGG | - | chr4_1:87400397-87400416 | Msa0581890:intron | 25.0% |
| !!! | TTGGAGAACTTTTAAAGATA+TGG | - | chr4_1:87400546-87400565 | Msa0581890:intron | 25.0% |
| !!! | AGAACTTTTAAAGATATGGA+TGG | - | chr4_1:87400550-87400569 | Msa0581890:intron | 25.0% |
| ! | TCTTTACATTAGTACTTATG+TGG | + | chr4_1:87400576-87400595 | None:intergenic | 25.0% |
| ! | TATAAATTTGCCACTAAACT+AGG | - | chr4_1:87400780-87400799 | Msa0581890:intron | 25.0% |
| !!! | ATAAAACAGTCTTTTTGAAG+GGG | + | chr4_1:87400912-87400931 | None:intergenic | 25.0% |
| !! | GATAAAACAGTCTTTTTGAA+GGG | + | chr4_1:87400913-87400932 | None:intergenic | 25.0% |
| !! | AGATAAAACAGTCTTTTTGA+AGG | + | chr4_1:87400914-87400933 | None:intergenic | 25.0% |
| !! | TACTTACAATTTAAGGCATT+TGG | + | chr4_1:87401124-87401143 | None:intergenic | 25.0% |
| !! | GCTAAAGTACTTACAATTTA+AGG | + | chr4_1:87401131-87401150 | None:intergenic | 25.0% |
| ! | TGTATGAAAAACTTTCATCA+AGG | - | chr4_1:87401156-87401175 | Msa0581890:intron | 25.0% |
| !! | ATTGTTATAAAGAAAGTGCA+CGG | + | chr4_1:87401198-87401217 | None:intergenic | 25.0% |
| ! | TCATAATAATCTGAACAATG+AGG | - | chr4_1:87401296-87401315 | Msa0581890:intron | 25.0% |
| ! | GTTTGTTCAAGACATTTAAA+TGG | + | chr4_1:87401541-87401560 | None:intergenic | 25.0% |
| !! | GTGTCTGAAATTCAATTAAT+AGG | - | chr4_1:87401571-87401590 | Msa0581890:CDS | 25.0% |
| ! | CTGAAATTCAATTAATAGGA+AGG | - | chr4_1:87401575-87401594 | Msa0581890:CDS | 25.0% |
| !!! | AACTAAGAAGTTGATAAATG+CGG | + | chr4_1:87402087-87402106 | None:intergenic | 25.0% |
| !!! | AATTATTTTATAGGCAGTGT+CGG | + | chr4_1:87402294-87402313 | None:intergenic | 25.0% |
| ! | TAATTTCAAGACCTAAATTC+AGG | - | chr4_1:87402309-87402328 | Msa0581890:CDS | 25.0% |
| ! | AAAATCACATACCTGAATTT+AGG | + | chr4_1:87402323-87402342 | None:intergenic | 25.0% |
| !! | AATTTGATGCATCTATTTTG+TGG | - | chr4_1:87402569-87402588 | Msa0581890:intron | 25.0% |
| ! | ATCAAATGTGTGAAAAAGTA+GGG | + | chr4_1:87402736-87402755 | None:intergenic | 25.0% |
| ! | AAAACAATTACAATGTCAGT+CGG | + | chr4_1:87402767-87402786 | None:intergenic | 25.0% |
| ! | AATAGAAGCTTCATATTTCT+CGG | + | chr4_1:87402835-87402854 | None:intergenic | 25.0% |
| !!! | TTTGCAATTTTGACATTGTT+GGG | - | chr4_1:87403222-87403241 | Msa0581890:CDS | 25.0% |
| !! | CAAATGGGTTTATATTAAAG+AGG | - | chr4_1:87403345-87403364 | Msa0581890:CDS | 25.0% |
| ! | AAAGCAAGAAATCTATAGAT+GGG | + | chr4_1:87403386-87403405 | None:intergenic | 25.0% |
| ! | TAAAGCAAGAAATCTATAGA+TGG | + | chr4_1:87403387-87403406 | None:intergenic | 25.0% |
| !!! | GATCTTTTTTATGATAGAGA+GGG | + | chr4_1:87403823-87403842 | None:intergenic | 25.0% |
| !!! | TGATCTTTTTTATGATAGAG+AGG | + | chr4_1:87403824-87403843 | None:intergenic | 25.0% |
| ! | TTATCGATATCAAAACCTTT+AGG | - | chr4_1:87403853-87403872 | Msa0581890:intron | 25.0% |
| ! | TATTAGACAAAAAAGAGCTT+AGG | - | chr4_1:87403901-87403920 | Msa0581890:intron | 25.0% |
| ! | AAACTTAACATCCTAAAAAG+AGG | + | chr4_1:87404061-87404080 | None:intergenic | 25.0% |
| ! | TTAAATATGTGATGTGATTG+AGG | - | chr4_1:87404144-87404163 | Msa0581890:intron | 25.0% |
| ! | ATCAGAAAACACTAGAATAT+AGG | + | chr4_1:87404411-87404430 | None:intergenic | 25.0% |
| !!! | TCTTTTATTTTTTCCCAGAA+TGG | - | chr4_1:87404455-87404474 | Msa0581890:intron | 25.0% |
| ! | TTTATTTAACATCAGTAACC+TGG | - | chr4_1:87404589-87404608 | Msa0581890:intron | 25.0% |
| ! | TTATTTAACATCAGTAACCT+GGG | - | chr4_1:87404590-87404609 | Msa0581890:intron | 25.0% |
| ! | ATAGAAGTTTGATGGAATAA+AGG | + | chr4_1:87404645-87404664 | None:intergenic | 25.0% |
| ! | TTAACTCCAATATACAAGTA+AGG | + | chr4_1:87405015-87405034 | None:intergenic | 25.0% |
| ! | TGTATATTGGAGTTAAGAAA+AGG | - | chr4_1:87405019-87405038 | Msa0581890:CDS | 25.0% |
| ! | GACAAATATTTGAAAGAGAT+TGG | + | chr4_1:87405109-87405128 | None:intergenic | 25.0% |
| ! | ATCTCTTTCAAATATTTGTC+TGG | - | chr4_1:87405109-87405128 | Msa0581890:exon | 25.0% |
| !! | TGTTTACTTTCAACTTTTCA+AGG | - | chr4_1:87405223-87405242 | Msa0581890:intron | 25.0% |
| !!! | AAGTTTCTAAGACCAAAAAT+GGG | + | chr4_1:87405282-87405301 | None:intergenic | 25.0% |
| !!! | TAAGTTTCTAAGACCAAAAA+TGG | + | chr4_1:87405283-87405302 | None:intergenic | 25.0% |
| ! | ACATTCATATCATTTCATGT+CGG | - | chr4_1:87405339-87405358 | Msa0581890:five_prime_UTR | 25.0% |
| ! | AAGCTTAACGAGATCATTTT+TGG | - | chr4_1:87399419-87399438 | Msa0581890:three_prime_UTR | 30.0% |
| ATTATAAACCCATACACAAG+TGG | - | chr4_1:87399990-87400009 | Msa0581890:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr4_1:87400037-87400056 | Msa0581890:intron | 30.0% | |
| !!! | TTTTTTTTTTGTGGTGTTCG+AGG | + | chr4_1:87400076-87400095 | None:intergenic | 30.0% |
| ! | TAACAATTTCGGCATTTTGA+CGG | - | chr4_1:87400155-87400174 | Msa0581890:intron | 30.0% |
| AATGCAGAATTGGATGTATT+AGG | - | chr4_1:87400407-87400426 | Msa0581890:intron | 30.0% | |
| ATGCAGAATTGGATGTATTA+GGG | - | chr4_1:87400408-87400427 | Msa0581890:intron | 30.0% | |
| ATGTATTAGGGATGTATGTT+TGG | - | chr4_1:87400420-87400439 | Msa0581890:intron | 30.0% | |
| TTAGCTTCTATTTGAAGACA+AGG | - | chr4_1:87400480-87400499 | Msa0581890:intron | 30.0% | |
| TAGCTTCTATTTGAAGACAA+GGG | - | chr4_1:87400481-87400500 | Msa0581890:intron | 30.0% | |
| !! | TACTAATGTAAAGAGCATCA+GGG | - | chr4_1:87400582-87400601 | Msa0581890:intron | 30.0% |
| ATGCAATCATTAACAAACCT+CGG | + | chr4_1:87400741-87400760 | None:intergenic | 30.0% | |
| GGGACCGTATAAAATATAAA+TGG | + | chr4_1:87400892-87400911 | None:intergenic | 30.0% | |
| !!! | TTTAACCCTGCTTTATTTTG+AGG | + | chr4_1:87401057-87401076 | None:intergenic | 30.0% |
| TCAAAATAAAGCAGGGTTAA+AGG | - | chr4_1:87401056-87401075 | Msa0581890:intron | 30.0% | |
| ! | ACACTCTAAAGAAGCAAAAA+CGG | - | chr4_1:87401082-87401101 | Msa0581890:intron | 30.0% |
| !!! | ATTTTTGGTCTGAAAGCATT+TGG | + | chr4_1:87401363-87401382 | None:intergenic | 30.0% |
| !!! | ATAGAAACTTCTGGTTTTTG+CGG | + | chr4_1:87401396-87401415 | None:intergenic | 30.0% |
| !! | GGTGCTGTTAATAACTATTA+TGG | - | chr4_1:87401484-87401503 | Msa0581890:CDS | 30.0% |
| !!! | CTGATATTTTAGCTTACTTG+TGG | - | chr4_1:87401513-87401532 | Msa0581890:CDS | 30.0% |
| TAAATGTCTTGAACAAACTC+AGG | - | chr4_1:87401543-87401562 | Msa0581890:CDS | 30.0% | |
| ! | TTAATAGGAAGGCACAATAA+AGG | - | chr4_1:87401586-87401605 | Msa0581890:CDS | 30.0% |
| AACACTCACAATACTTCTTA+AGG | + | chr4_1:87401633-87401652 | None:intergenic | 30.0% | |
| ! | ATTTACAATTTTCAGAGCAG+AGG | + | chr4_1:87401669-87401688 | None:intergenic | 30.0% |
| ! | ATTGACTGCAAGAATTTTGA+AGG | - | chr4_1:87401691-87401710 | Msa0581890:CDS | 30.0% |
| ! | AAAATCCAGGAAAGTTTTTC+TGG | - | chr4_1:87401850-87401869 | Msa0581890:intron | 30.0% |
| GCTTCTTTGCATTATTGATA+CGG | - | chr4_1:87401924-87401943 | Msa0581890:intron | 30.0% | |
| TTAGTTACTCTTTCTGTTGT+AGG | - | chr4_1:87401973-87401992 | Msa0581890:intron | 30.0% | |
| TAGTTACTCTTTCTGTTGTA+GGG | - | chr4_1:87401974-87401993 | Msa0581890:intron | 30.0% | |
| CCAAACATAGTGAATTTGAA+TGG | + | chr4_1:87402003-87402022 | None:intergenic | 30.0% | |
| CCATTCAAATTCACTATGTT+TGG | - | chr4_1:87402000-87402019 | Msa0581890:intron | 30.0% | |
| !! | ACTAAGAAGTTGATAAATGC+GGG | + | chr4_1:87402086-87402105 | None:intergenic | 30.0% |
| !!! | TTAGTTCTGTTTTAATCCCT+TGG | - | chr4_1:87402101-87402120 | Msa0581890:CDS | 30.0% |
| AAATTAATAGGGAAGTAGCA+AGG | + | chr4_1:87402139-87402158 | None:intergenic | 30.0% | |
| !! | CGCTATCTTGAATTTTAATC+AGG | - | chr4_1:87402217-87402236 | Msa0581890:intron | 30.0% |
| !! | TTTTTCAATCATTAGGTGAG+CGG | - | chr4_1:87402342-87402361 | Msa0581890:CDS | 30.0% |
| ! | TTTCCAAATTTTATGCTGCT+AGG | - | chr4_1:87402629-87402648 | Msa0581890:intron | 30.0% |
| TCAAATGTGTGAAAAAGTAG+GGG | + | chr4_1:87402735-87402754 | None:intergenic | 30.0% | |
| GATCAAATGTGTGAAAAAGT+AGG | + | chr4_1:87402737-87402756 | None:intergenic | 30.0% | |
| TTCAAATTTCCAGAAATGAG+AGG | - | chr4_1:87402786-87402805 | Msa0581890:CDS | 30.0% | |
| TCAAATTTCCAGAAATGAGA+GGG | - | chr4_1:87402787-87402806 | Msa0581890:CDS | 30.0% | |
| CACATCAATTTAAGTGTTTC+TGG | + | chr4_1:87402978-87402997 | None:intergenic | 30.0% | |
| TAAATTGATGTGTGATGAAC+AGG | - | chr4_1:87402986-87403005 | Msa0581890:CDS | 30.0% | |
| CTTGGTGAACTGATTATTAT+TGG | - | chr4_1:87403158-87403177 | Msa0581890:intron | 30.0% | |
| ! | TATTGGTAGCATTAAAGGTT+AGG | - | chr4_1:87403175-87403194 | Msa0581890:intron | 30.0% |
| CAACAATGTCAAAATTGCAA+AGG | + | chr4_1:87403223-87403242 | None:intergenic | 30.0% | |
| !! | CTTTGCAATTTTGACATTGT+TGG | - | chr4_1:87403221-87403240 | Msa0581890:CDS | 30.0% |
| !! | TTGCAATTTTGACATTGTTG+GGG | - | chr4_1:87403223-87403242 | Msa0581890:CDS | 30.0% |
| TCCTGTCTTAAATATACATG+TGG | - | chr4_1:87403265-87403284 | Msa0581890:CDS | 30.0% | |
| ! | ACCACATGTATATTTAAGAC+AGG | + | chr4_1:87403269-87403288 | None:intergenic | 30.0% |
| TGAAATTAAGAACGTCAAGT+TGG | - | chr4_1:87403601-87403620 | Msa0581890:intron | 30.0% | |
| GAAGAAAATGGTGATAAGTA+TGG | - | chr4_1:87403724-87403743 | Msa0581890:intron | 30.0% | |
| CTAATATAGAAAGATGTTCC+TGG | + | chr4_1:87403887-87403906 | None:intergenic | 30.0% | |
| TACAATGTATTGAGTGTGTT+GGG | + | chr4_1:87403993-87404012 | None:intergenic | 30.0% | |
| ATACAATGTATTGAGTGTGT+TGG | + | chr4_1:87403994-87404013 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGAGACCTCTTTTT+AGG | - | chr4_1:87404047-87404066 | Msa0581890:intron | 30.0% |
| TTTCCACAACTGAAAAATCA+AGG | - | chr4_1:87404103-87404122 | Msa0581890:intron | 30.0% | |
| AACACACTTAAAGAATACGA+AGG | + | chr4_1:87404332-87404351 | None:intergenic | 30.0% | |
| TTAATCGTCATTAAGGAGTA+AGG | + | chr4_1:87404357-87404376 | None:intergenic | 30.0% | |
| GAGAAAACACCTAAAAACAA+TGG | - | chr4_1:87404766-87404785 | Msa0581890:CDS | 30.0% | |
| AATATACAAGTAAGGTCACT+AGG | + | chr4_1:87405007-87405026 | None:intergenic | 30.0% | |
| TAGTGACCTTACTTGTATAT+TGG | - | chr4_1:87405006-87405025 | Msa0581890:CDS | 30.0% | |
| ATGTGCATATAGTTAGATGT+TGG | - | chr4_1:87405081-87405100 | Msa0581890:CDS | 30.0% | |
| !! | TAAGACCAAAAATGGGTTTT+CGG | + | chr4_1:87405275-87405294 | None:intergenic | 30.0% |
| TTCTTGAAGCAAGAAATCGA+CGG | + | chr4_1:87399293-87399312 | None:intergenic | 35.0% | |
| AATTACAATCCGTAACGCAT+AGG | - | chr4_1:87399311-87399330 | Msa0581890:three_prime_UTR | 35.0% | |
| GAAACTTTACCTATGCGTTA+CGG | + | chr4_1:87399323-87399342 | None:intergenic | 35.0% | |
| GGTTTAAGAAGAAACGTTGA+TGG | - | chr4_1:87399466-87399485 | Msa0581890:three_prime_UTR | 35.0% | |
| TGAATCATCGAAACTAACTG+CGG | + | chr4_1:87399782-87399801 | None:intergenic | 35.0% | |
| AAAACACCATACACAAGTGA+AGG | - | chr4_1:87400097-87400116 | Msa0581890:intron | 35.0% | |
| GTTGTTCGACCTAACAATTT+CGG | - | chr4_1:87400144-87400163 | Msa0581890:intron | 35.0% | |
| GTCAAAATGCCGAAATTGTT+AGG | + | chr4_1:87400156-87400175 | None:intergenic | 35.0% | |
| TTAAATGCAACACAATCCAC+AGG | + | chr4_1:87400192-87400211 | None:intergenic | 35.0% | |
| TAATTAACCACACGTTGTGT+TGG | - | chr4_1:87400291-87400310 | Msa0581890:intron | 35.0% | |
| TAGAAACATAAGGCTTATGC+TGG | - | chr4_1:87400454-87400473 | Msa0581890:intron | 35.0% | |
| !! | GTACTAATGTAAAGAGCATC+AGG | - | chr4_1:87400581-87400600 | Msa0581890:intron | 35.0% |
| !!! | TATTTTGAGGCTGTGATCTA+GGG | + | chr4_1:87401044-87401063 | None:intergenic | 35.0% |
| !!! | TTATTTTGAGGCTGTGATCT+AGG | + | chr4_1:87401045-87401064 | None:intergenic | 35.0% |
| ! | TAGCTAATTTTGCAACTGCA+AGG | - | chr4_1:87401217-87401236 | Msa0581890:intron | 35.0% |
| GCAAAAACCAGAAGTTTCTA+TGG | - | chr4_1:87401395-87401414 | Msa0581890:intron | 35.0% | |
| CTACTAACCATAGAAACTTC+TGG | + | chr4_1:87401405-87401424 | None:intergenic | 35.0% | |
| CTCCCTCATGTATTTATAGT+TGG | - | chr4_1:87401435-87401454 | Msa0581890:CDS | 35.0% | |
| CGCCAACTATAAATACATGA+GGG | + | chr4_1:87401440-87401459 | None:intergenic | 35.0% | |
| ACGCCAACTATAAATACATG+AGG | + | chr4_1:87401441-87401460 | None:intergenic | 35.0% | |
| TGCATCAGTGAGCTAAAATT+TGG | - | chr4_1:87401463-87401482 | Msa0581890:CDS | 35.0% | |
| !! | ATTTTGAAGGAAGTGACGAA+TGG | - | chr4_1:87401704-87401723 | Msa0581890:CDS | 35.0% |
| ! | TAGTCTAGTTCAAATCAGAC+AGG | - | chr4_1:87401750-87401769 | Msa0581890:CDS | 35.0% |
| ! | TCTCTTCTTGGGTGTTATAT+GGG | + | chr4_1:87401830-87401849 | None:intergenic | 35.0% |
| ! | TTCTCTTCTTGGGTGTTATA+TGG | + | chr4_1:87401831-87401850 | None:intergenic | 35.0% |
| ! | TCCTGGATTTTTCTCTTCTT+GGG | + | chr4_1:87401841-87401860 | None:intergenic | 35.0% |
| ! | TTCCTGGATTTTTCTCTTCT+TGG | + | chr4_1:87401842-87401861 | None:intergenic | 35.0% |
| ATTTGCCAGAAAAACTTTCC+TGG | + | chr4_1:87401858-87401877 | None:intergenic | 35.0% | |
| CATTATTGATACGGTTTCGT+TGG | - | chr4_1:87401933-87401952 | Msa0581890:intron | 35.0% | |
| !! | CTAAGAAGTTGATAAATGCG+GGG | + | chr4_1:87402085-87402104 | None:intergenic | 35.0% |
| ! | AAGGAAATTGATGGTTCCAA+GGG | + | chr4_1:87402120-87402139 | None:intergenic | 35.0% |
| ! | GATTTTTCACATTCTGTGTC+TGG | + | chr4_1:87402453-87402472 | None:intergenic | 35.0% |
| ATTTGTCTTTGCAGCTTCTT+TGG | + | chr4_1:87402500-87402519 | None:intergenic | 35.0% | |
| ! | TTGATGCATCTATTTTGTGG+TGG | - | chr4_1:87402572-87402591 | Msa0581890:intron | 35.0% |
| TGTCCTAGCAGCATAAAATT+TGG | + | chr4_1:87402635-87402654 | None:intergenic | 35.0% | |
| !! | TGCAATTTTGACATTGTTGG+GGG | - | chr4_1:87403224-87403243 | Msa0581890:CDS | 35.0% |
| !! | TTTTTCAGCTATGTCAAACG+AGG | + | chr4_1:87403316-87403335 | None:intergenic | 35.0% |
| AGAAATCTATAGATGGGTCA+CGG | + | chr4_1:87403380-87403399 | None:intergenic | 35.0% | |
| ATGTGAGTGAGACAAAAAGA+TGG | + | chr4_1:87403422-87403441 | None:intergenic | 35.0% | |
| AAAAAGATTCTTGGCTCATG+AGG | + | chr4_1:87403448-87403467 | None:intergenic | 35.0% | |
| TCACCATGCAAAAAGATTCT+TGG | + | chr4_1:87403457-87403476 | None:intergenic | 35.0% | |
| ! | AATCTTTTTGCATGGTGAGA+TGG | - | chr4_1:87403459-87403478 | Msa0581890:intron | 35.0% |
| ! | ATCTTTTTGCATGGTGAGAT+GGG | - | chr4_1:87403460-87403479 | Msa0581890:intron | 35.0% |
| AAGCGTAATGCATCATAAAG+AGG | + | chr4_1:87403531-87403550 | None:intergenic | 35.0% | |
| TCTGAATCAAGAAGCAATTC+TGG | - | chr4_1:87403693-87403712 | Msa0581890:intron | 35.0% | |
| ! | CTTATCACCATTTTCTTCCT+TGG | + | chr4_1:87403722-87403741 | None:intergenic | 35.0% |
| ! | CCATTTACAGTCTTTTACCT+AGG | + | chr4_1:87403798-87403817 | None:intergenic | 35.0% |
| CCTAGGTAAAAGACTGTAAA+TGG | - | chr4_1:87403795-87403814 | Msa0581890:intron | 35.0% | |
| !! | AACCTTTAGGATAGTTATCC+AGG | - | chr4_1:87403866-87403885 | Msa0581890:intron | 35.0% |
| TTCCTGGATAACTATCCTAA+AGG | + | chr4_1:87403871-87403890 | None:intergenic | 35.0% | |
| !! | CTTCCTTGATTTTTCAGTTG+TGG | + | chr4_1:87404109-87404128 | None:intergenic | 35.0% |
| !!! | TTATTTTTTCCCAGAATGGC+TGG | - | chr4_1:87404459-87404478 | Msa0581890:intron | 35.0% |
| ATATGGCTAAAGATGAACTG+AGG | + | chr4_1:87404508-87404527 | None:intergenic | 35.0% | |
| !! | CCACTATCACCATTGTTTTT+AGG | + | chr4_1:87404778-87404797 | None:intergenic | 35.0% |
| CCTAAAAACAATGGTGATAG+TGG | - | chr4_1:87404775-87404794 | Msa0581890:CDS | 35.0% | |
| ! | ATGTCCATTAGTTCTTGCAT+AGG | + | chr4_1:87404863-87404882 | None:intergenic | 35.0% |
| ATACTACTGATCTTTCGTTG+AGG | - | chr4_1:87404884-87404903 | Msa0581890:CDS | 35.0% | |
| ! | GACTTCCTTTTTCTTTTGAC+AGG | - | chr4_1:87404956-87404975 | Msa0581890:CDS | 35.0% |
| TCAGTCCTGTCAAAAGAAAA+AGG | + | chr4_1:87404964-87404983 | None:intergenic | 35.0% | |
| ! | TCTTTTGACAGGACTGAATT+TGG | - | chr4_1:87404967-87404986 | Msa0581890:CDS | 35.0% |
| !! | CTTGTGTATCTTCAAGTTGA+TGG | - | chr4_1:87405402-87405421 | Msa0581890:five_prime_UTR | 35.0% |
| CATGCAGAGAATGGAATTTC+CGG | + | chr4_1:87399230-87399249 | None:intergenic | 40.0% | |
| AGACGAAAACATGCAGAGAA+TGG | + | chr4_1:87399239-87399258 | None:intergenic | 40.0% | |
| !! | ATCGTTGAGTTGTCTTTTGC+AGG | - | chr4_1:87399445-87399464 | Msa0581890:three_prime_UTR | 40.0% |
| TAGCTAATCGGAAATTTGCG+CGG | - | chr4_1:87399513-87399532 | Msa0581890:three_prime_UTR | 40.0% | |
| AAATCCAAATGCATTTGCGC+CGG | + | chr4_1:87399656-87399675 | None:intergenic | 40.0% | |
| ! | ATTTTCAGTCACCAGTGAGA+CGG | - | chr4_1:87399672-87399691 | Msa0581890:exon | 40.0% |
| GAATCATCGAAACTAACTGC+GGG | + | chr4_1:87399781-87399800 | None:intergenic | 40.0% | |
| TGTTGATGCATATCGAACAC+CGG | - | chr4_1:87400314-87400333 | Msa0581890:intron | 40.0% | |
| ! | TGTGCGAAAAGCATGATTCT+TGG | - | chr4_1:87400527-87400546 | Msa0581890:intron | 40.0% |
| ! | TTGGTGATTGCCTAGTTTAG+TGG | + | chr4_1:87400793-87400812 | None:intergenic | 40.0% |
| TCACAGCCTCAAAATAAAGC+AGG | - | chr4_1:87401048-87401067 | Msa0581890:intron | 40.0% | |
| CACAGCCTCAAAATAAAGCA+GGG | - | chr4_1:87401049-87401068 | Msa0581890:intron | 40.0% | |
| TCATTCCAATTGCCTCCTTT+CGG | + | chr4_1:87401326-87401345 | None:intergenic | 40.0% | |
| ATGTCTTGAACAAACTCAGG+AGG | - | chr4_1:87401546-87401565 | Msa0581890:CDS | 40.0% | |
| AAAGGATGTCACTGCAAGAA+AGG | - | chr4_1:87401604-87401623 | Msa0581890:CDS | 40.0% | |
| GCAACTAATGCTGCCATTAA+TGG | - | chr4_1:87401772-87401791 | Msa0581890:CDS | 40.0% | |
| AAGTCCAACTGCTCCATTAA+TGG | + | chr4_1:87401788-87401807 | None:intergenic | 40.0% | |
| ATTAATGGAGCAGTTGGACT+TGG | - | chr4_1:87401787-87401806 | Msa0581890:CDS | 40.0% | |
| TGTTATATGGGTTCCAGAGA+TGG | + | chr4_1:87401818-87401837 | None:intergenic | 40.0% | |
| ACCCAAGAAGAGAAAAATCC+AGG | - | chr4_1:87401837-87401856 | Msa0581890:intron | 40.0% | |
| TCACTCACAGATCAAACTGT+CGG | - | chr4_1:87401877-87401896 | Msa0581890:intron | 40.0% | |
| !! | TAATGCAAAGAAGCACCTGT+TGG | + | chr4_1:87401918-87401937 | None:intergenic | 40.0% |
| ! | CAAGGAAATTGATGGTTCCA+AGG | + | chr4_1:87402121-87402140 | None:intergenic | 40.0% |
| GGAAGTAGCAAGGAAATTGA+TGG | + | chr4_1:87402129-87402148 | None:intergenic | 40.0% | |
| GATAAGGGAGATGAAGCTAT+AGG | + | chr4_1:87402251-87402270 | None:intergenic | 40.0% | |
| TTCATGTTGAAGGTCTGTGT+TGG | - | chr4_1:87402417-87402436 | Msa0581890:intron | 40.0% | |
| ! | TTTTCACATTCTGTGTCTGG+AGG | + | chr4_1:87402450-87402469 | None:intergenic | 40.0% |
| !!! | TGCAGGTTTTGACTAACACA+TGG | - | chr4_1:87402519-87402538 | Msa0581890:intron | 40.0% |
| ATGTGTGAAAAAGTAGGGGA+CGG | + | chr4_1:87402731-87402750 | None:intergenic | 40.0% | |
| TTTGCATGATTCTCCGAAAC+AGG | + | chr4_1:87402903-87402922 | None:intergenic | 40.0% | |
| !! | TTAAGTGTTTCTGGTGACAG+TGG | + | chr4_1:87402969-87402988 | None:intergenic | 40.0% |
| TTGATGTGTGATGAACAGGA+TGG | - | chr4_1:87402990-87403009 | Msa0581890:CDS | 40.0% | |
| TGATGTGTGATGAACAGGAT+GGG | - | chr4_1:87402991-87403010 | Msa0581890:CDS | 40.0% | |
| ! | GAACAGGATGGGATGTTTTT+CGG | - | chr4_1:87403002-87403021 | Msa0581890:CDS | 40.0% |
| !! | GATGGGATGTTTTTCGGTAA+TGG | - | chr4_1:87403008-87403027 | Msa0581890:CDS | 40.0% |
| ! | TTCGGTAATGGTTCTGCAAA+TGG | - | chr4_1:87403020-87403039 | Msa0581890:CDS | 40.0% |
| CAAAAGTCTTCCAACTCTGA+TGG | - | chr4_1:87403077-87403096 | Msa0581890:intron | 40.0% | |
| GTTGGGGGAAAAATTAACTC+AGG | - | chr4_1:87403239-87403258 | Msa0581890:CDS | 40.0% | |
| GAAATCTATAGATGGGTCAC+GGG | + | chr4_1:87403379-87403398 | None:intergenic | 40.0% | |
| ! | GAGCCAAGAATCTTTTTGCA+TGG | - | chr4_1:87403451-87403470 | Msa0581890:intron | 40.0% |
| ATCATAAAGAGGCCAGGTAT+GGG | + | chr4_1:87403520-87403539 | None:intergenic | 40.0% | |
| TAATGCATCATAAAGAGGCC+AGG | + | chr4_1:87403526-87403545 | None:intergenic | 40.0% | |
| GATGATGCTACAAAGTAAGC+TGG | + | chr4_1:87403571-87403590 | None:intergenic | 40.0% | |
| CACTGCTATGGGTGAATATA+TGG | + | chr4_1:87403645-87403664 | None:intergenic | 40.0% | |
| CGAGGATAGTTGCTATAGTT+TGG | + | chr4_1:87403773-87403792 | None:intergenic | 40.0% | |
| ! | CAAGGAAGCGCATTGTTATT+TGG | - | chr4_1:87404121-87404140 | Msa0581890:intron | 40.0% |
| AGATTGCAGAAGCAGAAAGT+GGG | - | chr4_1:87404246-87404265 | Msa0581890:intron | 40.0% | |
| TCTGTTCTGTCTCTCTCTTT+GGG | - | chr4_1:87404287-87404306 | Msa0581890:intron | 40.0% | |
| !! | TGATAGTGGTGCTGAAACTA+AGG | - | chr4_1:87404789-87404808 | Msa0581890:CDS | 40.0% |
| ! | GATAGTGGTGCTGAAACTAA+GGG | - | chr4_1:87404790-87404809 | Msa0581890:CDS | 40.0% |
| GCTACCTATGCAAGAACTAA+TGG | - | chr4_1:87404856-87404875 | Msa0581890:CDS | 40.0% | |
| ATACACCAGATTACCACTTC+CGG | + | chr4_1:87404929-87404948 | None:intergenic | 40.0% | |
| GGACTGAATTTGGATTGTGA+AGG | - | chr4_1:87404977-87404996 | Msa0581890:CDS | 40.0% | |
| TTGACTCAACTGCATGTAAC+TGG | - | chr4_1:87405145-87405164 | Msa0581890:intron | 40.0% | |
| !! | TGACGTTGATAACCAAGTCT+TGG | - | chr4_1:87405179-87405198 | Msa0581890:intron | 40.0% |
| ! | TTGATAACCAAGTCTTGGCA+TGG | - | chr4_1:87405184-87405203 | Msa0581890:intron | 40.0% |
| TCATGTCGGAATTCAACATC+AGG | - | chr4_1:87405353-87405372 | Msa0581890:five_prime_UTR | 40.0% | |
| CATGTCGGAATTCAACATCA+GGG | - | chr4_1:87405354-87405373 | Msa0581890:five_prime_UTR | 40.0% | |
| ATTCACCGCAACAAACTCTC+CGG | - | chr4_1:87399170-87399189 | Msa0581890:three_prime_UTR | 45.0% | |
| GGTGTGACGAGAAAGATTGA+CGG | + | chr4_1:87399209-87399228 | None:intergenic | 45.0% | |
| GTCAATCTTTCTCGTCACAC+CGG | - | chr4_1:87399208-87399227 | Msa0581890:three_prime_UTR | 45.0% | |
| CGACGCTGGATTTAGCTAAT+CGG | - | chr4_1:87399501-87399520 | Msa0581890:three_prime_UTR | 45.0% | |
| ! | ATGGTTTGTGACAGTGACTG+CGG | + | chr4_1:87399599-87399618 | None:intergenic | 45.0% |
| ! | TGTGGTGGTGATTGTTTCCA+CGG | + | chr4_1:87399698-87399717 | None:intergenic | 45.0% |
| GATTGAAAATGCGGCATCAC+CGG | + | chr4_1:87399752-87399771 | None:intergenic | 45.0% | |
| TTACCAAAGCTAAGCTCACG+GGG | + | chr4_1:87400016-87400035 | None:intergenic | 45.0% | |
| CTTACCAAAGCTAAGCTCAC+GGG | + | chr4_1:87400017-87400036 | None:intergenic | 45.0% | |
| CCTTACCAAAGCTAAGCTCA+CGG | + | chr4_1:87400018-87400037 | None:intergenic | 45.0% | |
| CCAACACCTTCACTTGTGTA+TGG | + | chr4_1:87400106-87400125 | None:intergenic | 45.0% | |
| ! | CCATACACAAGTGAAGGTGT+TGG | - | chr4_1:87400103-87400122 | Msa0581890:intron | 45.0% |
| TTAGGTCGAACAACATGACC+GGG | + | chr4_1:87400138-87400157 | None:intergenic | 45.0% | |
| GTTAGGTCGAACAACATGAC+CGG | + | chr4_1:87400139-87400158 | None:intergenic | 45.0% | |
| ATCAACACCAACACAACGTG+TGG | + | chr4_1:87400301-87400320 | None:intergenic | 45.0% | |
| ! | CTCCATACGAAAAGTGTGTC+CGG | + | chr4_1:87400336-87400355 | None:intergenic | 45.0% |
| CATTCCAATTGCCTCCTTTC+GGG | + | chr4_1:87401325-87401344 | None:intergenic | 45.0% | |
| !! | TGCGGACTGCTTGCAATTTT+TGG | + | chr4_1:87401378-87401397 | None:intergenic | 45.0% |
| ! | ATTTTCAGAGCAGAGGACGT+TGG | + | chr4_1:87401662-87401681 | None:intergenic | 45.0% |
| ATATGGGTTCCAGAGATGGA+GGG | + | chr4_1:87401814-87401833 | None:intergenic | 45.0% | |
| TATATGGGTTCCAGAGATGG+AGG | + | chr4_1:87401815-87401834 | None:intergenic | 45.0% | |
| TACAATCGGATGTCAGAGCA+TGG | + | chr4_1:87402183-87402202 | None:intergenic | 45.0% | |
| AAGGAAGCTGACAGGGATAA+GGG | + | chr4_1:87402266-87402285 | None:intergenic | 45.0% | |
| AAAGGAAGCTGACAGGGATA+AGG | + | chr4_1:87402267-87402286 | None:intergenic | 45.0% | |
| GGAAACAAAGGAAGCTGACA+GGG | + | chr4_1:87402273-87402292 | None:intergenic | 45.0% | |
| ! | ATAGGCAGTGTCGGAAACAA+AGG | + | chr4_1:87402285-87402304 | None:intergenic | 45.0% |
| GAAGCTGCAAAGACAAATGC+AGG | - | chr4_1:87402502-87402521 | Msa0581890:intron | 45.0% | |
| TGTGTGAAAAAGTAGGGGAC+GGG | + | chr4_1:87402730-87402749 | None:intergenic | 45.0% | |
| AAATGAGAGGGAAAGCTGCT+AGG | - | chr4_1:87402799-87402818 | Msa0581890:CDS | 45.0% | |
| AGATGTTGCCAAGCCTGTTT+CGG | - | chr4_1:87402887-87402906 | Msa0581890:CDS | 45.0% | |
| ATGATTCTCCGAAACAGGCT+TGG | + | chr4_1:87402898-87402917 | None:intergenic | 45.0% | |
| AGCAGTGTATCCATCAGAGT+TGG | + | chr4_1:87403090-87403109 | None:intergenic | 45.0% | |
| CTGTTTATGCAGAGCAGGAA+AGG | - | chr4_1:87403108-87403127 | Msa0581890:intron | 45.0% | |
| !! | TGGGCATATTGATTCAGCTG+AGG | - | chr4_1:87403479-87403498 | Msa0581890:CDS | 45.0% |
| CATCATAAAGAGGCCAGGTA+TGG | + | chr4_1:87403521-87403540 | None:intergenic | 45.0% | |
| CAACAAGGTGACACTGCTAT+GGG | + | chr4_1:87403656-87403675 | None:intergenic | 45.0% | |
| ACAACAAGGTGACACTGCTA+TGG | + | chr4_1:87403657-87403676 | None:intergenic | 45.0% | |
| ! | GTCACCTTGTTGTCATGCAT+CGG | - | chr4_1:87403664-87403683 | Msa0581890:intron | 45.0% |
| TAAGCCGATGCATGACAACA+AGG | + | chr4_1:87403671-87403690 | None:intergenic | 45.0% | |
| AGAAGCAATTCTGGTCACCA+AGG | - | chr4_1:87403702-87403721 | Msa0581890:intron | 45.0% | |
| CTGGTCACCAAGGAAGAAAA+TGG | - | chr4_1:87403712-87403731 | Msa0581890:intron | 45.0% | |
| TAGCAACTATCCTCGTTCCT+AGG | - | chr4_1:87403778-87403797 | Msa0581890:intron | 45.0% | |
| ! | CAGTCTTTTACCTAGGAACG+AGG | + | chr4_1:87403791-87403810 | None:intergenic | 45.0% |
| CACTTTCTGCTTCTGCAATC+TGG | + | chr4_1:87404247-87404266 | None:intergenic | 45.0% | |
| CAGATTGCAGAAGCAGAAAG+TGG | - | chr4_1:87404245-87404264 | Msa0581890:intron | 45.0% | |
| CTCTGTTCTGTCTCTCTCTT+TGG | - | chr4_1:87404286-87404305 | Msa0581890:intron | 45.0% | |
| CTGTTCTGTCTCTCTCTTTG+GGG | - | chr4_1:87404288-87404307 | Msa0581890:intron | 45.0% | |
| !!! | TTTTTTCCCAGAATGGCTGG+TGG | - | chr4_1:87404462-87404481 | Msa0581890:intron | 45.0% |
| CATTATTCTTGCAGTTGCCC+AGG | + | chr4_1:87404610-87404629 | None:intergenic | 45.0% | |
| TTCTTGCATAGGTAGCCACT+GGG | + | chr4_1:87404852-87404871 | None:intergenic | 45.0% | |
| AACAACCGGAAGTGGTAATC+TGG | - | chr4_1:87404921-87404940 | Msa0581890:CDS | 45.0% | |
| ! | TACGGGCTGCACAAAAAAAC+TGG | + | chr4_1:87405048-87405067 | None:intergenic | 45.0% |
| ACATGAGCAGCATCACTTAC+GGG | + | chr4_1:87405065-87405084 | None:intergenic | 45.0% | |
| CACATGAGCAGCATCACTTA+CGG | + | chr4_1:87405066-87405085 | None:intergenic | 45.0% | |
| GGTTATCAACGTCACTAGAG+AGG | + | chr4_1:87405173-87405192 | None:intergenic | 45.0% | |
| ! | GTCCACCGAAAACCCATTTT+TGG | - | chr4_1:87405267-87405286 | Msa0581890:intron | 45.0% |
| !! | GACCAAAAATGGGTTTTCGG+TGG | + | chr4_1:87405272-87405291 | None:intergenic | 45.0% |
| TCCGAAATATAGCCGCTGTA+AGG | - | chr4_1:87405305-87405324 | Msa0581890:five_prime_UTR | 45.0% | |
| GCCTTACAGCGGCTATATTT+CGG | + | chr4_1:87405309-87405328 | None:intergenic | 45.0% | |
| TGAGTACATGTGCCTTACAG+CGG | + | chr4_1:87405320-87405339 | None:intergenic | 45.0% | |
| !!! | TCTTTAAAATTTATAATTTA+GGG | + | chr4_1:87404203-87404222 | None:intergenic | 5.0% |
| GTGACGAGAAAGATTGACGG+CGG | + | chr4_1:87399206-87399225 | None:intergenic | 50.0% | |
| TCGGAAATTTGCGCGGCAAT+TGG | - | chr4_1:87399520-87399539 | Msa0581890:three_prime_UTR | 50.0% | |
| GGAAACAATCACCACCACAG+TGG | - | chr4_1:87399699-87399718 | Msa0581890:CDS | 50.0% | |
| ! | GGAAGCTTTGGTGTGGAGTA+CGG | + | chr4_1:87399812-87399831 | None:intergenic | 50.0% |
| GTACTCCACACCAAAGCTTC+CGG | - | chr4_1:87399811-87399830 | Msa0581890:CDS | 50.0% | |
| AACCTCTTCACCGGAAGCTT+TGG | + | chr4_1:87399824-87399843 | None:intergenic | 50.0% | |
| AGCGCTTGAAACCTCTTCAC+CGG | + | chr4_1:87399833-87399852 | None:intergenic | 50.0% | |
| !! | CCGTGAGCTTAGCTTTGGTA+AGG | - | chr4_1:87400015-87400034 | Msa0581890:intron | 50.0% |
| TAGGTCGAACAACATGACCG+GGG | + | chr4_1:87400137-87400156 | None:intergenic | 50.0% | |
| !! | GGCATTTTGACGGTTGAGCT+AGG | - | chr4_1:87400165-87400184 | Msa0581890:intron | 50.0% |
| ! | CACCGGACACACTTTTCGTA+TGG | - | chr4_1:87400331-87400350 | Msa0581890:intron | 50.0% |
| GAGCATCAGGGATGAAAGTC+TGG | - | chr4_1:87400594-87400613 | Msa0581890:intron | 50.0% | |
| GCAATCTGAGCATCATTCCG+AGG | - | chr4_1:87400721-87400740 | Msa0581890:intron | 50.0% | |
| GCTAGGAGACTCGTTTCTGA+AGG | + | chr4_1:87401022-87401041 | None:intergenic | 50.0% | |
| TACTGTGAGTGCTATGCAGC+TGG | - | chr4_1:87401240-87401259 | Msa0581890:intron | 50.0% | |
| ACTGTGAGTGCTATGCAGCT+GGG | - | chr4_1:87401241-87401260 | Msa0581890:intron | 50.0% | |
| GCAGCTGGGATCTATTGTGA+TGG | - | chr4_1:87401255-87401274 | Msa0581890:intron | 50.0% | |
| GGAGGCAATTGGAATGACAC+TGG | - | chr4_1:87401329-87401348 | Msa0581890:intron | 50.0% | |
| GCTGCCATTAATGGAGCAGT+TGG | - | chr4_1:87401781-87401800 | Msa0581890:CDS | 50.0% | |
| CATGACTGCTCAACACCAAC+AGG | - | chr4_1:87401900-87401919 | Msa0581890:intron | 50.0% | |
| CGGAAACAAAGGAAGCTGAC+AGG | + | chr4_1:87402274-87402293 | None:intergenic | 50.0% | |
| GCAGCTTTCCCTCTCATTTC+TGG | + | chr4_1:87402798-87402817 | None:intergenic | 50.0% | |
| ! | CACTGCTGTTTATGCAGAGC+AGG | - | chr4_1:87403103-87403122 | Msa0581890:intron | 50.0% |
| CCAGGTATGGGTGTACTACA+TGG | + | chr4_1:87403508-87403527 | None:intergenic | 50.0% | |
| CCATGTAGTACACCCATACC+TGG | - | chr4_1:87403505-87403524 | Msa0581890:CDS | 50.0% | |
| GTTCTTGCATAGGTAGCCAC+TGG | + | chr4_1:87404853-87404872 | None:intergenic | 50.0% | |
| TCTTTCGTTGAGGTTGCCTG+CGG | - | chr4_1:87404894-87404913 | Msa0581890:CDS | 50.0% | |
| ! | TTGCCTGCGGATTGAACAAC+CGG | - | chr4_1:87404907-87404926 | Msa0581890:CDS | 50.0% |
| TCTGTGTCCATGCCAAGACT+TGG | + | chr4_1:87405194-87405213 | None:intergenic | 50.0% | |
| TGTTGCGGTGAATCCACCGT+GGG | + | chr4_1:87399163-87399182 | None:intergenic | 55.0% | |
| TTGTTGCGGTGAATCCACCG+TGG | + | chr4_1:87399164-87399183 | None:intergenic | 55.0% | |
| !! | GATCGCCGGAGAGTTTGTTG+CGG | + | chr4_1:87399178-87399197 | None:intergenic | 55.0% |
| GGCGACAATGTCAGGTACGA+CGG | + | chr4_1:87399569-87399588 | None:intergenic | 55.0% | |
| AAATGCATTTGCGCCGGAGG+AGG | + | chr4_1:87399650-87399669 | None:intergenic | 55.0% | |
| TCCTCCGGCGCAAATGCATT+TGG | - | chr4_1:87399649-87399668 | Msa0581890:three_prime_UTR | 55.0% | |
| TCCAAATGCATTTGCGCCGG+AGG | + | chr4_1:87399653-87399672 | None:intergenic | 55.0% | |
| TGAAAATGCGGCATCACCGG+CGG | + | chr4_1:87399749-87399768 | None:intergenic | 55.0% | |
| GGGCGCGGTGATTGAAAATG+CGG | + | chr4_1:87399761-87399780 | None:intergenic | 55.0% | |
| ATCGAAACTAACTGCGGGCG+CGG | + | chr4_1:87399776-87399795 | None:intergenic | 55.0% | |
| ! | CTTCACCGGAAGCTTTGGTG+TGG | + | chr4_1:87399819-87399838 | None:intergenic | 55.0% |
| CACCAAAGCTTCCGGTGAAG+AGG | - | chr4_1:87399819-87399838 | Msa0581890:CDS | 55.0% | |
| TCACGGGGCCACTTGTGTAT+GGG | + | chr4_1:87400001-87400020 | None:intergenic | 55.0% | |
| GGTGTTCGAGGTTCGACACT+CGG | + | chr4_1:87400064-87400083 | None:intergenic | 55.0% | |
| !! | AGGTGTTGGTGTTCGAACCC+CGG | - | chr4_1:87400117-87400136 | Msa0581890:intron | 55.0% |
| ! | TGAGGCTGTGATCTAGGGCT+AGG | + | chr4_1:87401039-87401058 | None:intergenic | 55.0% |
| GAACAATGAGGCTGCCCGAA+AGG | - | chr4_1:87401308-87401327 | Msa0581890:intron | 55.0% | |
| CAGGAACCACCAGCCATTCT+GGG | + | chr4_1:87404471-87404490 | None:intergenic | 55.0% | |
| TCAGGAACCACCAGCCATTC+TGG | + | chr4_1:87404472-87404491 | None:intergenic | 55.0% | |
| TGCCAATTGCTCCATCCCAG+TGG | - | chr4_1:87404834-87404853 | Msa0581890:CDS | 55.0% | |
| AGCCACTGGGATGGAGCAAT+TGG | + | chr4_1:87404839-87404858 | None:intergenic | 55.0% | |
| TGCATAGGTAGCCACTGGGA+TGG | + | chr4_1:87404848-87404867 | None:intergenic | 55.0% | |
| CTTCCGGTTGTTCAATCCGC+AGG | + | chr4_1:87404913-87404932 | None:intergenic | 55.0% | |
| ! | GCGGATTGAACAACCGGAAG+TGG | - | chr4_1:87404913-87404932 | Msa0581890:CDS | 55.0% |
| GGAGAAGAGCGAAACGACGC+TGG | - | chr4_1:87399487-87399506 | Msa0581890:three_prime_UTR | 60.0% | |
| TTGGATTTCGCCGCCGCATG+TGG | - | chr4_1:87399539-87399558 | Msa0581890:three_prime_UTR | 60.0% | |
| GTACGACGGACCTCCACATG+CGG | + | chr4_1:87399555-87399574 | None:intergenic | 60.0% | |
| TGTGACAGTGACTGCGGCGT+CGG | + | chr4_1:87399593-87399612 | None:intergenic | 60.0% | |
| ! | CGGTGTCGGAGGTCGTAGAA+TGG | + | chr4_1:87399618-87399637 | None:intergenic | 60.0% |
| TCTACGACCTCCGACACCGT+CGG | - | chr4_1:87399619-87399638 | Msa0581890:three_prime_UTR | 60.0% | |
| GGAGGCAAATCCGACGGTGT+CGG | + | chr4_1:87399632-87399651 | None:intergenic | 60.0% | |
| ACCGTCGGATTTGCCTCCTC+CGG | - | chr4_1:87399634-87399653 | Msa0581890:three_prime_UTR | 60.0% | |
| TGTTTCCACGGCCGTCTCAC+TGG | + | chr4_1:87399686-87399705 | None:intergenic | 60.0% | |
| GTTCTCTGCTGCTGCCACTG+TGG | + | chr4_1:87399716-87399735 | None:intergenic | 60.0% | |
| GAGAACGTCACAGTCTCCGC+CGG | - | chr4_1:87399730-87399749 | Msa0581890:CDS | 60.0% | |
| CTCACGGGGCCACTTGTGTA+TGG | + | chr4_1:87400002-87400021 | None:intergenic | 60.0% | |
| TGGCCCCGTGAGCTTAGCTT+TGG | - | chr4_1:87400010-87400029 | Msa0581890:intron | 60.0% | |
| GACGGTTGAGCTAGGACCTG+TGG | - | chr4_1:87400173-87400192 | Msa0581890:intron | 60.0% | |
| CAATGAGGCTGCCCGAAAGG+AGG | - | chr4_1:87401311-87401330 | Msa0581890:intron | 60.0% | |
| GCTGCCCGAAAGGAGGCAAT+TGG | - | chr4_1:87401318-87401337 | Msa0581890:intron | 60.0% | |
| CAGAGCAGAGGACGTTGGCA+TGG | + | chr4_1:87401657-87401676 | None:intergenic | 60.0% | |
| GGACTTGGACCCTCCATCTC+TGG | - | chr4_1:87401802-87401821 | Msa0581890:intron | 60.0% | |
| CGGTGAATCCACCGTGGGAG+TGG | + | chr4_1:87399158-87399177 | None:intergenic | 65.0% | |
| TGACGGCGGAGAACGATCGC+CGG | + | chr4_1:87399192-87399211 | None:intergenic | 65.0% | |
| GATTTCGCCGCCGCATGTGG+AGG | - | chr4_1:87399542-87399561 | Msa0581890:three_prime_UTR | 65.0% | |
| ! | GCGTCGGTGGCGACAATGTC+AGG | + | chr4_1:87399577-87399596 | None:intergenic | 65.0% |
| ! | GGCAAATCCGACGGTGTCGG+AGG | + | chr4_1:87399629-87399648 | None:intergenic | 65.0% |
| GCCGGAGGAGGCAAATCCGA+CGG | + | chr4_1:87399638-87399657 | None:intergenic | 65.0% | |
| AGTCACCAGTGAGACGGCCG+TGG | - | chr4_1:87399678-87399697 | Msa0581890:exon | 65.0% | |
| CTCTGCTGCTGCCACTGTGG+TGG | + | chr4_1:87399713-87399732 | None:intergenic | 65.0% | |
| CGACGGACCTCCACATGCGG+CGG | + | chr4_1:87399552-87399571 | None:intergenic | 70.0% | |
| ! | GACAGTGACTGCGGCGTCGG+TGG | + | chr4_1:87399590-87399609 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 87399148 | 87405462 | 87399148 | ID=Msa0581890;Name=Msa0581890 |
| chr4_1 | mRNA | 87399148 | 87405462 | 87399148 | ID=Msa0581890-mRNA-1;Parent=Msa0581890;Name=Msa0581890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=203|1|0.88|1|0.87|0.77|9|541|596 |
| chr4_1 | exon | 87399148 | 87399885 | 87399148 | ID=Msa0581890-mRNA-1:exon:32524;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87401419 | 87401811 | 87401419 | ID=Msa0581890-mRNA-1:exon:32523;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87402087 | 87402181 | 87402087 | ID=Msa0581890-mRNA-1:exon:32522;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87402280 | 87402371 | 87402280 | ID=Msa0581890-mRNA-1:exon:32521;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87402689 | 87403045 | 87402689 | ID=Msa0581890-mRNA-1:exon:32520;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87403194 | 87403371 | 87403194 | ID=Msa0581890-mRNA-1:exon:32519;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87403474 | 87403584 | 87403474 | ID=Msa0581890-mRNA-1:exon:32518;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87404758 | 87405143 | 87404758 | ID=Msa0581890-mRNA-1:exon:32517;Parent=Msa0581890-mRNA-1 |
| chr4_1 | exon | 87405278 | 87405462 | 87405278 | ID=Msa0581890-mRNA-1:exon:32516;Parent=Msa0581890-mRNA-1 |
| chr4_1 | five_prime_UTR | 87405278 | 87405462 | 87405278 | ID=Msa0581890-mRNA-1:five_prime_utr;Parent=Msa0581890-mRNA-1 |
| chr4_1 | five_prime_UTR | 87405126 | 87405143 | 87405126 | ID=Msa0581890-mRNA-1:five_prime_utr;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87404758 | 87405125 | 87404758 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87403474 | 87403584 | 87403474 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87403194 | 87403371 | 87403194 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87402689 | 87403045 | 87402689 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87402280 | 87402371 | 87402280 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87402087 | 87402181 | 87402087 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87401419 | 87401811 | 87401419 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | CDS | 87399689 | 87399885 | 87399689 | ID=Msa0581890-mRNA-1:cds;Parent=Msa0581890-mRNA-1 |
| chr4_1 | three_prime_UTR | 87399148 | 87399688 | 87399148 | ID=Msa0581890-mRNA-1:three_prime_utr;Parent=Msa0581890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
