Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390130 | XP_013467842.1 | 94.521 | 292 | 11 | 1 | 1 | 292 | 1 | 287 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390130 | sp|Q9SVC5|DOF35_ARATH | 37.542 | 301 | 108 | 12 | 5 | 292 | 13 | 246 | 1.38e-46 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390130 | A0A072VIR1 | 94.521 | 292 | 11 | 1 | 1 | 292 | 1 | 287 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0390130 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0390130 | Msa0789750 | 0.908559 | 1.497469e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390130 | MtrunA17_Chr1g0177251 | 94.521 | 292 | 11 | 1 | 1 | 292 | 1 | 287 | 0.0 | 554 |
| Msa0390130 | MtrunA17_Chr3g0126201 | 53.741 | 147 | 41 | 5 | 3 | 147 | 41 | 162 | 3.53e-41 | 145 |
| Msa0390130 | MtrunA17_Chr2g0326001 | 63.441 | 93 | 28 | 2 | 13 | 105 | 41 | 127 | 8.13e-32 | 119 |
| Msa0390130 | MtrunA17_Chr3g0127201 | 87.037 | 54 | 7 | 0 | 13 | 66 | 28 | 81 | 2.45e-29 | 113 |
| Msa0390130 | MtrunA17_Chr8g0346551 | 87.037 | 54 | 7 | 0 | 13 | 66 | 25 | 78 | 3.58e-29 | 112 |
| Msa0390130 | MtrunA17_Chr4g0047001 | 58.416 | 101 | 28 | 3 | 14 | 105 | 57 | 152 | 1.23e-28 | 113 |
| Msa0390130 | MtrunA17_Chr8g0374251 | 81.034 | 58 | 11 | 0 | 8 | 65 | 64 | 121 | 1.30e-28 | 112 |
| Msa0390130 | MtrunA17_Chr4g0030051 | 90.196 | 51 | 5 | 0 | 14 | 64 | 43 | 93 | 3.53e-28 | 109 |
| Msa0390130 | MtrunA17_Chr4g0031411 | 75.862 | 58 | 14 | 0 | 14 | 71 | 77 | 134 | 5.05e-28 | 110 |
| Msa0390130 | MtrunA17_Chr1g0188851 | 75.410 | 61 | 15 | 0 | 6 | 66 | 37 | 97 | 5.67e-28 | 109 |
| Msa0390130 | MtrunA17_Chr7g0237921 | 81.132 | 53 | 10 | 0 | 14 | 66 | 78 | 130 | 1.39e-27 | 109 |
| Msa0390130 | MtrunA17_Chr8g0367161 | 75.862 | 58 | 14 | 0 | 9 | 66 | 29 | 86 | 2.40e-27 | 108 |
| Msa0390130 | MtrunA17_Chr2g0328021 | 77.358 | 53 | 12 | 0 | 14 | 66 | 64 | 116 | 4.06e-27 | 107 |
| Msa0390130 | MtrunA17_Chr7g0223311 | 79.310 | 58 | 9 | 1 | 14 | 68 | 79 | 136 | 4.87e-27 | 108 |
| Msa0390130 | MtrunA17_Chr5g0411951 | 87.755 | 49 | 6 | 0 | 14 | 62 | 45 | 93 | 1.85e-26 | 106 |
| Msa0390130 | MtrunA17_Chr3g0117601 | 81.132 | 53 | 10 | 0 | 10 | 62 | 59 | 111 | 2.81e-26 | 105 |
| Msa0390130 | MtrunA17_Chr2g0282441 | 82.353 | 51 | 9 | 0 | 14 | 64 | 27 | 77 | 3.66e-26 | 105 |
| Msa0390130 | MtrunA17_Chr4g0010151 | 79.245 | 53 | 11 | 0 | 14 | 66 | 84 | 136 | 4.42e-26 | 105 |
| Msa0390130 | MtrunA17_Chr4g0061761 | 85.714 | 49 | 7 | 0 | 14 | 62 | 42 | 90 | 3.25e-25 | 102 |
| Msa0390130 | MtrunA17_Chr8g0341671 | 80.000 | 50 | 10 | 0 | 14 | 63 | 22 | 71 | 1.60e-24 | 98.6 |
| Msa0390130 | MtrunA17_Chr2g0308011 | 78.431 | 51 | 11 | 0 | 10 | 60 | 35 | 85 | 3.37e-24 | 97.4 |
| Msa0390130 | MtrunA17_Chr2g0282511 | 85.106 | 47 | 7 | 0 | 14 | 60 | 47 | 93 | 3.66e-24 | 99.4 |
| Msa0390130 | MtrunA17_Chr4g0047761 | 75.926 | 54 | 12 | 1 | 13 | 66 | 73 | 125 | 5.76e-24 | 99.4 |
| Msa0390130 | MtrunA17_Chr3g0092111 | 66.129 | 62 | 20 | 1 | 14 | 75 | 138 | 198 | 5.78e-24 | 100 |
| Msa0390130 | MtrunA17_Chr8g0374111 | 73.585 | 53 | 14 | 0 | 14 | 66 | 31 | 83 | 5.79e-24 | 97.1 |
| Msa0390130 | MtrunA17_Chr2g0282051 | 74.074 | 54 | 13 | 1 | 13 | 66 | 47 | 99 | 8.33e-24 | 97.8 |
| Msa0390130 | MtrunA17_Chr4g0042481 | 45.872 | 109 | 57 | 2 | 6 | 114 | 117 | 223 | 4.08e-23 | 98.6 |
| Msa0390130 | MtrunA17_Chr7g0217581 | 54.321 | 81 | 34 | 2 | 6 | 86 | 227 | 304 | 9.74e-23 | 97.8 |
| Msa0390130 | MtrunA17_Chr6g0453321 | 49.000 | 100 | 42 | 4 | 6 | 99 | 131 | 227 | 1.43e-22 | 97.1 |
| Msa0390130 | MtrunA17_Chr2g0283811 | 64.516 | 62 | 21 | 1 | 4 | 65 | 40 | 100 | 4.05e-22 | 90.5 |
| Msa0390130 | MtrunA17_Chr5g0417571 | 61.667 | 60 | 22 | 1 | 6 | 65 | 133 | 191 | 1.94e-21 | 92.4 |
| Msa0390130 | MtrunA17_Chr7g0254161 | 50.562 | 89 | 37 | 2 | 14 | 102 | 103 | 184 | 3.48e-21 | 92.8 |
| Msa0390130 | MtrunA17_Chr8g0355261 | 59.016 | 61 | 24 | 1 | 6 | 66 | 113 | 172 | 4.20e-21 | 92.8 |
| Msa0390130 | MtrunA17_Chr5g0417601 | 60.938 | 64 | 24 | 1 | 2 | 65 | 131 | 193 | 2.79e-20 | 89.7 |
| Msa0390130 | MtrunA17_Chr6g0460721 | 62.264 | 53 | 20 | 0 | 14 | 66 | 91 | 143 | 4.32e-20 | 88.6 |
| Msa0390130 | MtrunA17_Chr6g0460731 | 65.385 | 52 | 18 | 0 | 14 | 65 | 98 | 149 | 5.83e-20 | 88.6 |
| Msa0390130 | MtrunA17_Chr5g0417551 | 58.462 | 65 | 26 | 1 | 1 | 65 | 117 | 180 | 1.02e-19 | 88.2 |
| Msa0390130 | MtrunA17_Chr5g0417561 | 65.385 | 52 | 18 | 0 | 14 | 65 | 121 | 172 | 4.22e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390130 | AT3G52440.1 | 37.542 | 301 | 108 | 12 | 5 | 292 | 13 | 246 | 1.40e-47 | 159 |
| Msa0390130 | AT3G52440.2 | 37.542 | 301 | 108 | 12 | 5 | 292 | 32 | 265 | 1.61e-47 | 160 |
| Msa0390130 | AT1G21340.1 | 38.424 | 203 | 93 | 6 | 11 | 213 | 37 | 207 | 2.52e-32 | 120 |
| Msa0390130 | AT3G61850.2 | 77.273 | 66 | 15 | 0 | 1 | 66 | 51 | 116 | 6.75e-31 | 117 |
| Msa0390130 | AT3G61850.3 | 77.273 | 66 | 15 | 0 | 1 | 66 | 51 | 116 | 6.75e-31 | 117 |
| Msa0390130 | AT5G60200.1 | 81.034 | 58 | 11 | 0 | 9 | 66 | 52 | 109 | 8.26e-31 | 116 |
| Msa0390130 | AT3G61850.5 | 77.273 | 66 | 15 | 0 | 1 | 66 | 51 | 116 | 9.58e-31 | 117 |
| Msa0390130 | AT3G61850.1 | 77.273 | 66 | 15 | 0 | 1 | 66 | 63 | 128 | 9.82e-31 | 117 |
| Msa0390130 | AT3G61850.4 | 77.273 | 66 | 15 | 0 | 1 | 66 | 63 | 128 | 1.27e-30 | 117 |
| Msa0390130 | AT4G24060.1 | 88.889 | 54 | 6 | 0 | 13 | 66 | 54 | 107 | 7.82e-30 | 115 |
| Msa0390130 | AT2G28510.1 | 66.667 | 75 | 25 | 0 | 13 | 87 | 49 | 123 | 2.12e-29 | 113 |
| Msa0390130 | AT1G07640.1 | 80.000 | 60 | 11 | 1 | 14 | 72 | 23 | 82 | 4.28e-29 | 112 |
| Msa0390130 | AT1G07640.2 | 80.000 | 60 | 11 | 1 | 14 | 72 | 79 | 138 | 4.58e-29 | 113 |
| Msa0390130 | AT1G07640.3 | 80.000 | 60 | 11 | 1 | 14 | 72 | 87 | 146 | 5.14e-29 | 113 |
| Msa0390130 | AT2G37590.1 | 84.906 | 53 | 8 | 0 | 14 | 66 | 91 | 143 | 3.45e-28 | 111 |
| Msa0390130 | AT4G00940.1 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 1.32e-27 | 108 |
| Msa0390130 | AT4G00940.3 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 1.32e-27 | 108 |
| Msa0390130 | AT4G00940.2 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 1.32e-27 | 108 |
| Msa0390130 | AT3G55370.1 | 76.271 | 59 | 14 | 0 | 13 | 71 | 77 | 135 | 1.39e-27 | 109 |
| Msa0390130 | AT3G55370.3 | 76.271 | 59 | 14 | 0 | 13 | 71 | 122 | 180 | 1.52e-27 | 110 |
| Msa0390130 | AT3G55370.2 | 76.271 | 59 | 14 | 0 | 13 | 71 | 77 | 135 | 1.73e-27 | 109 |
| Msa0390130 | AT5G60850.1 | 68.056 | 72 | 23 | 0 | 11 | 82 | 50 | 121 | 2.22e-27 | 108 |
| Msa0390130 | AT5G02460.1 | 81.132 | 53 | 10 | 0 | 14 | 66 | 97 | 149 | 4.62e-27 | 109 |
| Msa0390130 | AT3G45610.1 | 74.138 | 58 | 15 | 0 | 14 | 71 | 42 | 99 | 4.90e-27 | 106 |
| Msa0390130 | AT5G65590.1 | 79.245 | 53 | 11 | 0 | 14 | 66 | 43 | 95 | 4.97e-27 | 107 |
| Msa0390130 | AT2G46590.1 | 82.759 | 58 | 9 | 1 | 3 | 59 | 58 | 115 | 7.07e-27 | 108 |
| Msa0390130 | AT2G46590.2 | 93.617 | 47 | 3 | 0 | 13 | 59 | 81 | 127 | 9.26e-27 | 108 |
| Msa0390130 | AT2G28810.2 | 82.000 | 50 | 9 | 0 | 14 | 63 | 79 | 128 | 1.10e-26 | 107 |
| Msa0390130 | AT2G28810.1 | 82.000 | 50 | 9 | 0 | 14 | 63 | 96 | 145 | 1.58e-26 | 107 |
| Msa0390130 | AT1G28310.1 | 81.132 | 53 | 10 | 0 | 14 | 66 | 29 | 81 | 3.17e-26 | 105 |
| Msa0390130 | AT1G28310.2 | 81.132 | 53 | 10 | 0 | 14 | 66 | 53 | 105 | 4.68e-26 | 105 |
| Msa0390130 | AT3G21270.1 | 84.314 | 51 | 8 | 0 | 14 | 64 | 31 | 81 | 9.99e-26 | 101 |
| Msa0390130 | AT5G62940.1 | 85.714 | 49 | 7 | 0 | 14 | 62 | 75 | 123 | 1.05e-25 | 105 |
| Msa0390130 | AT1G51700.1 | 77.358 | 53 | 12 | 0 | 14 | 66 | 35 | 87 | 1.24e-25 | 101 |
| Msa0390130 | AT4G21050.1 | 77.358 | 53 | 12 | 0 | 14 | 66 | 26 | 78 | 1.48e-25 | 101 |
| Msa0390130 | AT1G64620.1 | 87.755 | 49 | 6 | 0 | 13 | 61 | 50 | 98 | 3.65e-25 | 103 |
| Msa0390130 | AT3G50410.1 | 75.472 | 53 | 13 | 0 | 14 | 66 | 32 | 84 | 3.88e-24 | 98.6 |
| Msa0390130 | AT4G38000.1 | 41.600 | 125 | 44 | 2 | 7 | 131 | 36 | 131 | 1.73e-23 | 96.7 |
| Msa0390130 | AT1G29160.1 | 61.538 | 65 | 24 | 1 | 1 | 65 | 52 | 115 | 3.53e-23 | 94.0 |
| Msa0390130 | AT1G69570.1 | 75.000 | 52 | 13 | 0 | 14 | 65 | 134 | 185 | 5.77e-23 | 97.8 |
| Msa0390130 | AT4G21040.1 | 75.000 | 52 | 13 | 0 | 14 | 65 | 27 | 78 | 1.92e-22 | 93.6 |
| Msa0390130 | AT5G66940.1 | 68.519 | 54 | 17 | 0 | 13 | 66 | 33 | 86 | 2.10e-22 | 93.2 |
| Msa0390130 | AT2G34140.1 | 71.154 | 52 | 15 | 0 | 14 | 65 | 60 | 111 | 2.32e-22 | 91.7 |
| Msa0390130 | AT3G47500.1 | 66.667 | 60 | 19 | 1 | 6 | 65 | 105 | 163 | 2.41e-22 | 96.7 |
| Msa0390130 | AT4G21080.1 | 57.333 | 75 | 31 | 1 | 14 | 87 | 27 | 101 | 2.55e-22 | 93.6 |
| Msa0390130 | AT1G47655.1 | 78.723 | 47 | 10 | 0 | 14 | 60 | 31 | 77 | 3.74e-22 | 92.4 |
| Msa0390130 | AT1G26790.1 | 65.000 | 60 | 20 | 1 | 6 | 65 | 106 | 164 | 6.22e-22 | 94.7 |
| Msa0390130 | AT5G62430.1 | 63.333 | 60 | 21 | 1 | 6 | 65 | 49 | 107 | 1.11e-21 | 92.8 |
| Msa0390130 | AT5G39660.3 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 1.26e-21 | 94.7 |
| Msa0390130 | AT5G39660.1 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 1.26e-21 | 94.7 |
| Msa0390130 | AT5G39660.2 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 1.26e-21 | 94.7 |
| Msa0390130 | AT4G21030.1 | 60.000 | 50 | 20 | 0 | 14 | 63 | 23 | 72 | 6.32e-14 | 69.3 |
Find 49 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATGCAGACTTGTTAAT+TGG | 0.179060 | 3_2:+757971 | Msa0390130:CDS |
| CAGACTTGTTAATTGGTAAT+TGG | 0.224718 | 3_2:+757978 | Msa0390130:CDS |
| AACCAATGCAAGATCAATAT+TGG | 0.225605 | 3_2:-757519 | None:intergenic |
| CAACCTCCACCACCATTTCT+TGG | 0.233577 | 3_2:+757935 | Msa0390130:CDS |
| GAACCACATCTTGGACAATT+TGG | 0.236842 | 3_2:-757182 | None:intergenic |
| GTTGTGGATGGTAATTGTTC+TGG | 0.295167 | 3_2:-757713 | None:intergenic |
| TCTAAAGTAGTGTGAGAATT+AGG | 0.320611 | 3_2:-757407 | None:intergenic |
| TGATCAGGATTATGTGAATC+AGG | 0.325306 | 3_2:-757566 | None:intergenic |
| GAAACATTAGTCCTCAAAAT+AGG | 0.325633 | 3_2:-757464 | None:intergenic |
| GTTTGTCATCATTTCAGAAT+TGG | 0.326626 | 3_2:-757894 | None:intergenic |
| ATCCTTGTCTAGAAAATTCA+AGG | 0.352452 | 3_2:+757609 | Msa0390130:CDS |
| GCAAAGGATGCAGAAGGTAT+TGG | 0.386602 | 3_2:+757264 | Msa0390130:CDS |
| TTCATCTTCTAGCTCTTCAT+TGG | 0.389939 | 3_2:+757484 | Msa0390130:CDS |
| ACCAATGCAAGATCAATATT+GGG | 0.430318 | 3_2:-757518 | None:intergenic |
| GGATCCCTTGGAAAATCAAA+AGG | 0.446347 | 3_2:-758004 | None:intergenic |
| TTTGAAAGTGAGAGAGTCAA+AGG | 0.455798 | 3_2:-757378 | None:intergenic |
| CTCAGAAATGTTCCTGTTGG+TGG | 0.463083 | 3_2:+757302 | Msa0390130:CDS |
| GGAGGTTGAGTGACTTGAAA+TGG | 0.465039 | 3_2:-757920 | None:intergenic |
| AATTAGAACTTGGTTTCAAA+GGG | 0.465903 | 3_2:+757675 | Msa0390130:CDS |
| AGAGTCATTTAAGGATCCCT+TGG | 0.473019 | 3_2:-758016 | None:intergenic |
| TGCAGAAGGTATTGGACAAA+AGG | 0.474750 | 3_2:+757272 | Msa0390130:CDS |
| TTTCTGCAGCCACCACCAAC+AGG | 0.485924 | 3_2:-757314 | None:intergenic |
| AATTTGTCTGAATTAGAACT+TGG | 0.496339 | 3_2:+757665 | Msa0390130:CDS |
| ACCCAATATTGATCTTGCAT+TGG | 0.497183 | 3_2:+757517 | Msa0390130:CDS |
| TCTGCATCATGAATTTGATC+AGG | 0.499238 | 3_2:-757959 | None:intergenic |
| GTGTTTGAAGAACCACATCT+TGG | 0.501582 | 3_2:-757191 | None:intergenic |
| AGAAATGTTCCTGTTGGTGG+TGG | 0.504532 | 3_2:+757305 | Msa0390130:CDS |
| ATTTGATCAGGACCAAGAAA+TGG | 0.507530 | 3_2:-757947 | None:intergenic |
| AGGCTATCGAATGTTGAAGT+TGG | 0.510893 | 3_2:+757629 | Msa0390130:CDS |
| GAATTAGAACTTGGTTTCAA+AGG | 0.520155 | 3_2:+757674 | Msa0390130:CDS |
| ACTAAAATGTGTTACTGTTG+TGG | 0.520461 | 3_2:-757729 | None:intergenic |
| TTTGAGCTACCACCTTTACC+TGG | 0.522476 | 3_2:+757833 | Msa0390130:CDS |
| GAATCCTCTTCACCAGGTAA+AGG | 0.531636 | 3_2:-757845 | None:intergenic |
| GGACCAAGAAATGGTGGTGG+AGG | 0.554806 | 3_2:-757938 | None:intergenic |
| ACCACCTTTACCTGGTGAAG+AGG | 0.564718 | 3_2:+757841 | Msa0390130:CDS |
| GATCCCTTGGAAAATCAAAA+GGG | 0.569118 | 3_2:-758003 | None:intergenic |
| GTTGAGTGACTTGAAATGGA+AGG | 0.571601 | 3_2:-757916 | None:intergenic |
| CACCAACAGGAACATTTCTG+AGG | 0.582266 | 3_2:-757301 | None:intergenic |
| TCCTCTTCACCAGGTAAAGG+TGG | 0.589467 | 3_2:-757842 | None:intergenic |
| ATGCAGACATGGAGAGTGAG+TGG | 0.591147 | 3_2:+757141 | None:intergenic |
| TCCCTCAGAAATGTTCCTGT+TGG | 0.593993 | 3_2:+757299 | Msa0390130:CDS |
| CATCACATGATCATGTATTG+TGG | 0.609822 | 3_2:+757870 | Msa0390130:CDS |
| TCAGGACCAAGAAATGGTGG+TGG | 0.616492 | 3_2:-757941 | None:intergenic |
| ACCAACAGGAACATTTCTGA+GGG | 0.622749 | 3_2:-757300 | None:intergenic |
| TCACCAAATTGTCCAAGATG+TGG | 0.624013 | 3_2:+757179 | Msa0390130:CDS |
| GATGATGAATCCTCTTCACC+AGG | 0.634001 | 3_2:-757851 | None:intergenic |
| AGAAGGTATTGGACAAAAGG+TGG | 0.645256 | 3_2:+757275 | Msa0390130:CDS |
| TGATCAGGACCAAGAAATGG+TGG | 0.649067 | 3_2:-757944 | None:intergenic |
| AAATGTGTTACTGTTGTGGA+TGG | 0.658240 | 3_2:-757725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAATTCTATCTTTTTGAA+GGG | - | chr3_2:757774-757793 | None:intergenic | 20.0% |
| !!! | ATCAATTCTATCTTTTTGAA+GGG | - | chr3_2:757774-757793 | None:intergenic | 20.0% |
| !! | ATTCTTATGATCCTATTTTG+AGG | + | chr3_2:757453-757472 | Msa0390130:CDS | 25.0% |
| ! | AATTTGTCTGAATTAGAACT+TGG | + | chr3_2:757665-757684 | Msa0390130:CDS | 25.0% |
| ! | AATTAGAACTTGGTTTCAAA+GGG | + | chr3_2:757675-757694 | Msa0390130:CDS | 25.0% |
| !! | GATCAATTCTATCTTTTTGA+AGG | - | chr3_2:757775-757794 | None:intergenic | 25.0% |
| !! | ATTCTTATGATCCTATTTTG+AGG | + | chr3_2:757453-757472 | Msa0390130:CDS | 25.0% |
| ! | AATTTGTCTGAATTAGAACT+TGG | + | chr3_2:757665-757684 | Msa0390130:CDS | 25.0% |
| ! | AATTAGAACTTGGTTTCAAA+GGG | + | chr3_2:757675-757694 | Msa0390130:CDS | 25.0% |
| !! | GATCAATTCTATCTTTTTGA+AGG | - | chr3_2:757775-757794 | None:intergenic | 25.0% |
| !! | CAACCAAGATATTTTTGCAA+AGG | + | chr3_2:757248-757267 | Msa0390130:CDS | 30.0% |
| CATCCTTTGCAAAAATATCT+TGG | - | chr3_2:757254-757273 | None:intergenic | 30.0% | |
| ! | TCTAAAGTAGTGTGAGAATT+AGG | - | chr3_2:757410-757429 | None:intergenic | 30.0% |
| GAAACATTAGTCCTCAAAAT+AGG | - | chr3_2:757467-757486 | None:intergenic | 30.0% | |
| ACCAATGCAAGATCAATATT+GGG | - | chr3_2:757521-757540 | None:intergenic | 30.0% | |
| AACCAATGCAAGATCAATAT+TGG | - | chr3_2:757522-757541 | None:intergenic | 30.0% | |
| !! | TTTGTTTTTCGCATTTGATC+AGG | - | chr3_2:757584-757603 | None:intergenic | 30.0% |
| ATCCTTGTCTAGAAAATTCA+AGG | + | chr3_2:757609-757628 | Msa0390130:CDS | 30.0% | |
| GAATTAGAACTTGGTTTCAA+AGG | + | chr3_2:757674-757693 | Msa0390130:CDS | 30.0% | |
| ! | ACTAAAATGTGTTACTGTTG+TGG | - | chr3_2:757732-757751 | None:intergenic | 30.0% |
| GTTTGTCATCATTTCAGAAT+TGG | - | chr3_2:757897-757916 | None:intergenic | 30.0% | |
| !! | CAGACTTGTTAATTGGTAAT+TGG | + | chr3_2:757978-757997 | Msa0390130:CDS | 30.0% |
| !! | CAACCAAGATATTTTTGCAA+AGG | + | chr3_2:757248-757267 | Msa0390130:CDS | 30.0% |
| CATCCTTTGCAAAAATATCT+TGG | - | chr3_2:757254-757273 | None:intergenic | 30.0% | |
| ! | TCTAAAGTAGTGTGAGAATT+AGG | - | chr3_2:757410-757429 | None:intergenic | 30.0% |
| GAAACATTAGTCCTCAAAAT+AGG | - | chr3_2:757467-757486 | None:intergenic | 30.0% | |
| ACCAATGCAAGATCAATATT+GGG | - | chr3_2:757521-757540 | None:intergenic | 30.0% | |
| AACCAATGCAAGATCAATAT+TGG | - | chr3_2:757522-757541 | None:intergenic | 30.0% | |
| !! | TTTGTTTTTCGCATTTGATC+AGG | - | chr3_2:757584-757603 | None:intergenic | 30.0% |
| ATCCTTGTCTAGAAAATTCA+AGG | + | chr3_2:757609-757628 | Msa0390130:CDS | 30.0% | |
| GAATTAGAACTTGGTTTCAA+AGG | + | chr3_2:757674-757693 | Msa0390130:CDS | 30.0% | |
| ! | ACTAAAATGTGTTACTGTTG+TGG | - | chr3_2:757732-757751 | None:intergenic | 30.0% |
| GTTTGTCATCATTTCAGAAT+TGG | - | chr3_2:757897-757916 | None:intergenic | 30.0% | |
| !! | CAGACTTGTTAATTGGTAAT+TGG | + | chr3_2:757978-757997 | Msa0390130:CDS | 30.0% |
| ! | ATTTTTGCAAAGGATGCAGA+AGG | + | chr3_2:757258-757277 | Msa0390130:CDS | 35.0% |
| TTTGAAAGTGAGAGAGTCAA+AGG | - | chr3_2:757381-757400 | None:intergenic | 35.0% | |
| !! | TTCATCTTCTAGCTCTTCAT+TGG | + | chr3_2:757484-757503 | Msa0390130:CDS | 35.0% |
| ACCCAATATTGATCTTGCAT+TGG | + | chr3_2:757517-757536 | Msa0390130:CDS | 35.0% | |
| TGATCAGGATTATGTGAATC+AGG | - | chr3_2:757569-757588 | None:intergenic | 35.0% | |
| ! | AGCCTTGAATTTTCTAGACA+AGG | - | chr3_2:757614-757633 | None:intergenic | 35.0% |
| ! | AAATGTGTTACTGTTGTGGA+TGG | - | chr3_2:757728-757747 | None:intergenic | 35.0% |
| CATCACATGATCATGTATTG+TGG | + | chr3_2:757870-757889 | Msa0390130:CDS | 35.0% | |
| ATTTGATCAGGACCAAGAAA+TGG | - | chr3_2:757950-757969 | None:intergenic | 35.0% | |
| TCTGCATCATGAATTTGATC+AGG | - | chr3_2:757962-757981 | None:intergenic | 35.0% | |
| !! | CATGATGCAGACTTGTTAAT+TGG | + | chr3_2:757971-757990 | Msa0390130:CDS | 35.0% |
| GATCCCTTGGAAAATCAAAA+GGG | - | chr3_2:758006-758025 | None:intergenic | 35.0% | |
| ! | ATTTTTGCAAAGGATGCAGA+AGG | + | chr3_2:757258-757277 | Msa0390130:CDS | 35.0% |
| TTTGAAAGTGAGAGAGTCAA+AGG | - | chr3_2:757381-757400 | None:intergenic | 35.0% | |
| !! | TTCATCTTCTAGCTCTTCAT+TGG | + | chr3_2:757484-757503 | Msa0390130:CDS | 35.0% |
| ACCCAATATTGATCTTGCAT+TGG | + | chr3_2:757517-757536 | Msa0390130:CDS | 35.0% | |
| TGATCAGGATTATGTGAATC+AGG | - | chr3_2:757569-757588 | None:intergenic | 35.0% | |
| ! | AGCCTTGAATTTTCTAGACA+AGG | - | chr3_2:757614-757633 | None:intergenic | 35.0% |
| ! | AAATGTGTTACTGTTGTGGA+TGG | - | chr3_2:757728-757747 | None:intergenic | 35.0% |
| CATCACATGATCATGTATTG+TGG | + | chr3_2:757870-757889 | Msa0390130:CDS | 35.0% | |
| ATTTGATCAGGACCAAGAAA+TGG | - | chr3_2:757950-757969 | None:intergenic | 35.0% | |
| TCTGCATCATGAATTTGATC+AGG | - | chr3_2:757962-757981 | None:intergenic | 35.0% | |
| !! | CATGATGCAGACTTGTTAAT+TGG | + | chr3_2:757971-757990 | Msa0390130:CDS | 35.0% |
| GATCCCTTGGAAAATCAAAA+GGG | - | chr3_2:758006-758025 | None:intergenic | 35.0% | |
| TCACCAAATTGTCCAAGATG+TGG | + | chr3_2:757179-757198 | Msa0390130:CDS | 40.0% | |
| GAACCACATCTTGGACAATT+TGG | - | chr3_2:757185-757204 | None:intergenic | 40.0% | |
| GTGTTTGAAGAACCACATCT+TGG | - | chr3_2:757194-757213 | None:intergenic | 40.0% | |
| !! | TGCAGAAGGTATTGGACAAA+AGG | + | chr3_2:757272-757291 | Msa0390130:CDS | 40.0% |
| !! | AGAAGGTATTGGACAAAAGG+TGG | + | chr3_2:757275-757294 | Msa0390130:CDS | 40.0% |
| ACCAACAGGAACATTTCTGA+GGG | - | chr3_2:757303-757322 | None:intergenic | 40.0% | |
| !! | GTGAATCAGGCTTTTGATTG+AGG | - | chr3_2:757556-757575 | None:intergenic | 40.0% |
| AGGCTATCGAATGTTGAAGT+TGG | + | chr3_2:757629-757648 | Msa0390130:CDS | 40.0% | |
| GTTGTGGATGGTAATTGTTC+TGG | - | chr3_2:757716-757735 | None:intergenic | 40.0% | |
| GTTGAGTGACTTGAAATGGA+AGG | - | chr3_2:757919-757938 | None:intergenic | 40.0% | |
| !!! | GAGCCCTTTTGATTTTCCAA+GGG | + | chr3_2:758000-758019 | Msa0390130:CDS | 40.0% |
| GGATCCCTTGGAAAATCAAA+AGG | - | chr3_2:758007-758026 | None:intergenic | 40.0% | |
| TCACCAAATTGTCCAAGATG+TGG | + | chr3_2:757179-757198 | Msa0390130:CDS | 40.0% | |
| GAACCACATCTTGGACAATT+TGG | - | chr3_2:757185-757204 | None:intergenic | 40.0% | |
| GTGTTTGAAGAACCACATCT+TGG | - | chr3_2:757194-757213 | None:intergenic | 40.0% | |
| !! | TGCAGAAGGTATTGGACAAA+AGG | + | chr3_2:757272-757291 | Msa0390130:CDS | 40.0% |
| !! | AGAAGGTATTGGACAAAAGG+TGG | + | chr3_2:757275-757294 | Msa0390130:CDS | 40.0% |
| ACCAACAGGAACATTTCTGA+GGG | - | chr3_2:757303-757322 | None:intergenic | 40.0% | |
| !! | GTGAATCAGGCTTTTGATTG+AGG | - | chr3_2:757556-757575 | None:intergenic | 40.0% |
| AGGCTATCGAATGTTGAAGT+TGG | + | chr3_2:757629-757648 | Msa0390130:CDS | 40.0% | |
| GTTGTGGATGGTAATTGTTC+TGG | - | chr3_2:757716-757735 | None:intergenic | 40.0% | |
| GTTGAGTGACTTGAAATGGA+AGG | - | chr3_2:757919-757938 | None:intergenic | 40.0% | |
| !!! | GAGCCCTTTTGATTTTCCAA+GGG | + | chr3_2:758000-758019 | Msa0390130:CDS | 40.0% |
| GGATCCCTTGGAAAATCAAA+AGG | - | chr3_2:758007-758026 | None:intergenic | 40.0% | |
| ! | GCAAAGGATGCAGAAGGTAT+TGG | + | chr3_2:757264-757283 | Msa0390130:CDS | 45.0% |
| TCCCTCAGAAATGTTCCTGT+TGG | + | chr3_2:757299-757318 | Msa0390130:CDS | 45.0% | |
| CACCAACAGGAACATTTCTG+AGG | - | chr3_2:757304-757323 | None:intergenic | 45.0% | |
| CTCAGAAATGTTCCTGTTGG+TGG | + | chr3_2:757302-757321 | Msa0390130:CDS | 45.0% | |
| ! | AGAAATGTTCCTGTTGGTGG+TGG | + | chr3_2:757305-757324 | Msa0390130:CDS | 45.0% |
| GGCTGCAGAAAAAACAGAAG+AGG | + | chr3_2:757326-757345 | Msa0390130:CDS | 45.0% | |
| TTTGAGCTACCACCTTTACC+TGG | + | chr3_2:757833-757852 | Msa0390130:CDS | 45.0% | |
| GAATCCTCTTCACCAGGTAA+AGG | - | chr3_2:757848-757867 | None:intergenic | 45.0% | |
| GATGATGAATCCTCTTCACC+AGG | - | chr3_2:757854-757873 | None:intergenic | 45.0% | |
| GGAGGTTGAGTGACTTGAAA+TGG | - | chr3_2:757923-757942 | None:intergenic | 45.0% | |
| TGATCAGGACCAAGAAATGG+TGG | - | chr3_2:757947-757966 | None:intergenic | 45.0% | |
| !!! | GGAGCCCTTTTGATTTTCCA+AGG | + | chr3_2:757999-758018 | Msa0390130:CDS | 45.0% |
| ! | GCAAAGGATGCAGAAGGTAT+TGG | + | chr3_2:757264-757283 | Msa0390130:CDS | 45.0% |
| TCCCTCAGAAATGTTCCTGT+TGG | + | chr3_2:757299-757318 | Msa0390130:CDS | 45.0% | |
| CACCAACAGGAACATTTCTG+AGG | - | chr3_2:757304-757323 | None:intergenic | 45.0% | |
| CTCAGAAATGTTCCTGTTGG+TGG | + | chr3_2:757302-757321 | Msa0390130:CDS | 45.0% | |
| ! | AGAAATGTTCCTGTTGGTGG+TGG | + | chr3_2:757305-757324 | Msa0390130:CDS | 45.0% |
| GGCTGCAGAAAAAACAGAAG+AGG | + | chr3_2:757326-757345 | Msa0390130:CDS | 45.0% | |
| TTTGAGCTACCACCTTTACC+TGG | + | chr3_2:757833-757852 | Msa0390130:CDS | 45.0% | |
| GAATCCTCTTCACCAGGTAA+AGG | - | chr3_2:757848-757867 | None:intergenic | 45.0% | |
| GATGATGAATCCTCTTCACC+AGG | - | chr3_2:757854-757873 | None:intergenic | 45.0% | |
| GGAGGTTGAGTGACTTGAAA+TGG | - | chr3_2:757923-757942 | None:intergenic | 45.0% | |
| TGATCAGGACCAAGAAATGG+TGG | - | chr3_2:757947-757966 | None:intergenic | 45.0% | |
| !!! | GGAGCCCTTTTGATTTTCCA+AGG | + | chr3_2:757999-758018 | Msa0390130:CDS | 45.0% |
| ACCACCTTTACCTGGTGAAG+AGG | + | chr3_2:757841-757860 | Msa0390130:CDS | 50.0% | |
| TCCTCTTCACCAGGTAAAGG+TGG | - | chr3_2:757845-757864 | None:intergenic | 50.0% | |
| CAACCTCCACCACCATTTCT+TGG | + | chr3_2:757935-757954 | Msa0390130:CDS | 50.0% | |
| TCAGGACCAAGAAATGGTGG+TGG | - | chr3_2:757944-757963 | None:intergenic | 50.0% | |
| ACCACCTTTACCTGGTGAAG+AGG | + | chr3_2:757841-757860 | Msa0390130:CDS | 50.0% | |
| TCCTCTTCACCAGGTAAAGG+TGG | - | chr3_2:757845-757864 | None:intergenic | 50.0% | |
| CAACCTCCACCACCATTTCT+TGG | + | chr3_2:757935-757954 | Msa0390130:CDS | 50.0% | |
| TCAGGACCAAGAAATGGTGG+TGG | - | chr3_2:757944-757963 | None:intergenic | 50.0% | |
| TTTCTGCAGCCACCACCAAC+AGG | - | chr3_2:757317-757336 | None:intergenic | 55.0% | |
| !! | GGACCAAGAAATGGTGGTGG+AGG | - | chr3_2:757941-757960 | None:intergenic | 55.0% |
| TTTCTGCAGCCACCACCAAC+AGG | - | chr3_2:757317-757336 | None:intergenic | 55.0% | |
| !! | GGACCAAGAAATGGTGGTGG+AGG | - | chr3_2:757941-757960 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 757149 | 758030 | 757149 | ID=Msa0390130;Name=Msa0390130 |
| chr3_2 | mRNA | 757149 | 758030 | 757149 | ID=Msa0390130-mRNA-1;Parent=Msa0390130;Name=Msa0390130-mRNA-1;_AED=0.00;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|293 |
| chr3_2 | exon | 757149 | 758030 | 757149 | ID=Msa0390130-mRNA-1:exon:194;Parent=Msa0390130-mRNA-1 |
| chr3_2 | CDS | 757149 | 758030 | 757149 | ID=Msa0390130-mRNA-1:cds;Parent=Msa0390130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
