AlfalfaGEDB | Msa0390130

M. sativa cultivar zhongmu-4 / Msa0390130

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0390130	XP_013467842.1	94.521	292	11	1	1	292	1	287	0.0	554

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0390130	sp\|Q9SVC5\|DOF35_ARATH	37.542	301	108	12	5	292	13	246	1.38e-46	159

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0390130	A0A072VIR1	94.521	292	11	1	1	292	1	287	0.0	554

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TFs/TRs:

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Gene ID	Type	Classification
Msa0390130	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0390130	Msa0789750	0.908559	1.497469e-81	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0390130	MtrunA17_Chr1g0177251	94.521	292	11	1	1	292	1	287	0.0	554
Msa0390130	MtrunA17_Chr3g0126201	53.741	147	41	5	3	147	41	162	3.53e-41	145
Msa0390130	MtrunA17_Chr2g0326001	63.441	93	28	2	13	105	41	127	8.13e-32	119
Msa0390130	MtrunA17_Chr3g0127201	87.037	54	7	0	13	66	28	81	2.45e-29	113
Msa0390130	MtrunA17_Chr8g0346551	87.037	54	7	0	13	66	25	78	3.58e-29	112
Msa0390130	MtrunA17_Chr4g0047001	58.416	101	28	3	14	105	57	152	1.23e-28	113
Msa0390130	MtrunA17_Chr8g0374251	81.034	58	11	0	8	65	64	121	1.30e-28	112
Msa0390130	MtrunA17_Chr4g0030051	90.196	51	5	0	14	64	43	93	3.53e-28	109
Msa0390130	MtrunA17_Chr4g0031411	75.862	58	14	0	14	71	77	134	5.05e-28	110
Msa0390130	MtrunA17_Chr1g0188851	75.410	61	15	0	6	66	37	97	5.67e-28	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0390130	AT3G52440.1	37.542	301	108	12	5	292	13	246	1.40e-47	159
Msa0390130	AT3G52440.2	37.542	301	108	12	5	292	32	265	1.61e-47	160
Msa0390130	AT1G21340.1	38.424	203	93	6	11	213	37	207	2.52e-32	120
Msa0390130	AT3G61850.2	77.273	66	15	0	1	66	51	116	6.75e-31	117
Msa0390130	AT3G61850.3	77.273	66	15	0	1	66	51	116	6.75e-31	117
Msa0390130	AT5G60200.1	81.034	58	11	0	9	66	52	109	8.26e-31	116
Msa0390130	AT3G61850.5	77.273	66	15	0	1	66	51	116	9.58e-31	117
Msa0390130	AT3G61850.1	77.273	66	15	0	1	66	63	128	9.82e-31	117
Msa0390130	AT3G61850.4	77.273	66	15	0	1	66	63	128	1.27e-30	117
Msa0390130	AT4G24060.1	88.889	54	6	0	13	66	54	107	7.82e-30	115

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Find 49 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGTTACTGTTGTGGA+TGG	0.658240	3_2:-757725	None:intergenic
AACCAATGCAAGATCAATAT+TGG	0.225605	3_2:-757519	None:intergenic
AATTAGAACTTGGTTTCAAA+GGG	0.465903	3_2:+757675	Msa0390130:CDS
AATTTGTCTGAATTAGAACT+TGG	0.496339	3_2:+757665	Msa0390130:CDS
ACCAACAGGAACATTTCTGA+GGG	0.622749	3_2:-757300	None:intergenic
ACCAATGCAAGATCAATATT+GGG	0.430318	3_2:-757518	None:intergenic
ACCACCTTTACCTGGTGAAG+AGG	0.564718	3_2:+757841	Msa0390130:CDS
ACCCAATATTGATCTTGCAT+TGG	0.497183	3_2:+757517	Msa0390130:CDS
ACTAAAATGTGTTACTGTTG+TGG	0.520461	3_2:-757729	None:intergenic
AGAAATGTTCCTGTTGGTGG+TGG	0.504532	3_2:+757305	Msa0390130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCCTTTGCAAAAATATCT+TGG	-	chr3_2:757254-757273	None:intergenic	30.0%
GAAACATTAGTCCTCAAAAT+AGG	-	chr3_2:757467-757486	None:intergenic	30.0%
ACCAATGCAAGATCAATATT+GGG	-	chr3_2:757521-757540	None:intergenic	30.0%
AACCAATGCAAGATCAATAT+TGG	-	chr3_2:757522-757541	None:intergenic	30.0%
ATCCTTGTCTAGAAAATTCA+AGG	+	chr3_2:757609-757628	Msa0390130:CDS	30.0%
GAATTAGAACTTGGTTTCAA+AGG	+	chr3_2:757674-757693	Msa0390130:CDS	30.0%
GTTTGTCATCATTTCAGAAT+TGG	-	chr3_2:757897-757916	None:intergenic	30.0%
CATCCTTTGCAAAAATATCT+TGG	-	chr3_2:757254-757273	None:intergenic	30.0%
GAAACATTAGTCCTCAAAAT+AGG	-	chr3_2:757467-757486	None:intergenic	30.0%
ACCAATGCAAGATCAATATT+GGG	-	chr3_2:757521-757540	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	757149	758030	757149	ID=Msa0390130;Name=Msa0390130
chr3_2	mRNA	757149	758030	757149	ID=Msa0390130-mRNA-1;Parent=Msa0390130;Name=Msa0390130-mRNA-1;_AED=0.00;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|293
chr3_2	exon	757149	758030	757149	ID=Msa0390130-mRNA-1:exon:194;Parent=Msa0390130-mRNA-1
chr3_2	CDS	757149	758030	757149	ID=Msa0390130-mRNA-1:cds;Parent=Msa0390130-mRNA-1

Gene Sequence

>Msa0390130

ATGGAGAGTGAGTGGAAAGCTAATCAGATATCACCAAATTGTCCAAGATGTGGTTCTTCAAACACAAAATTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGATATTTTTGCAAAGGATGCAGAAGGTATTGGACAAAAGGTGGATCCCTCAGAAATGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAGAAGAGGTAACAACAAAACATTAGTAAGACATCGATCCTTTGACTCTCTCACTTTCAAAAACTCACCTAATTCTCACACTACTTTAGATAACAATAACTCAATTGCTCATCATTCTTATGATCCTATTTTGAGGACTAATGTTTCATCTTCTAGCTCTTCATTGGTGAATGATAGACCCAATATTGATCTTGCATTGGTTTATGCAAATTTCCTCAATCAAAAGCCTGATTCACATAATCCTGATCAAATGCGAAAAACAAATTTTGATCCTTGTCTAGAAAATTCAAGGCTATCGAATGTTGAAGTTGGTACAAGTAGTTTAAATTTGTCTGAATTAGAACTTGGTTTCAAAGGGTGTTTGAATCTTAATCCAGAACAATTACCATCCACAACAGTAACACATTTTAGTGAGTACAATTCTATGCAAACCCTTCAAAAAGATAGAATTGATCATTGTAGTAATATTCATAATGATGCTGTGAATGTGAATTTTGAGCTACCACCTTTACCTGGTGAAGAGGATTCATCATCACATGATCATGTATTGTGGTCCAATTCTGAAATGATGACAAACCTTCCATTTCAAGTCACTCAACCTCCACCACCATTTCTTGGTCCTGATCAAATTCATGATGCAGACTTGTTAATTGGTAATTGGAGCCCTTTTGATTTTCCAAGGGATCCTTAA

Protein sequence

>Msa0390130

MESEWKANQISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNNKTLVRHRSFDSLTFKNSPNSHTTLDNNNSIAHHSYDPILRTNVSSSSSSLVNDRPNIDLALVYANFLNQKPDSHNPDQMRKTNFDPCLENSRLSNVEVGTSSLNLSELELGFKGCLNLNPEQLPSTTVTHFSEYNSMQTLQKDRIDHCSNIHNDAVNVNFELPPLPGEEDSSSHDHVLWSNSEMMTNLPFQVTQPPPPFLGPDQIHDADLLIGNWSPFDFPRDP*