Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789750 | XP_013467842.1 | 79.443 | 287 | 15 | 1 | 1 | 243 | 1 | 287 | 1.01e-160 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789750 | sp|Q9SVC5|DOF35_ARATH | 41.699 | 259 | 93 | 10 | 9 | 243 | 22 | 246 | 4.65e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789750 | A0A072VIR1 | 79.443 | 287 | 15 | 1 | 1 | 243 | 1 | 287 | 4.81e-161 | 456 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0789750 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0390130 | Msa0789750 | 0.908559 | 1.497469e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789750 | MtrunA17_Chr1g0177251 | 79.443 | 287 | 15 | 1 | 1 | 243 | 1 | 287 | 9.26e-165 | 456 |
| Msa0789750 | MtrunA17_Chr3g0126201 | 55.738 | 122 | 28 | 3 | 3 | 98 | 41 | 162 | 8.24e-40 | 140 |
| Msa0789750 | MtrunA17_Chr8g0346551 | 83.607 | 61 | 9 | 1 | 13 | 72 | 25 | 85 | 2.61e-29 | 110 |
| Msa0789750 | MtrunA17_Chr8g0367161 | 81.034 | 58 | 11 | 0 | 9 | 66 | 29 | 86 | 2.65e-29 | 112 |
| Msa0789750 | MtrunA17_Chr2g0326001 | 87.037 | 54 | 7 | 0 | 13 | 66 | 41 | 94 | 2.94e-29 | 111 |
| Msa0789750 | MtrunA17_Chr3g0127201 | 82.143 | 56 | 10 | 0 | 13 | 68 | 28 | 83 | 7.11e-29 | 110 |
| Msa0789750 | MtrunA17_Chr4g0047001 | 68.116 | 69 | 22 | 0 | 14 | 82 | 57 | 125 | 1.85e-28 | 110 |
| Msa0789750 | MtrunA17_Chr8g0374251 | 71.429 | 70 | 19 | 1 | 8 | 77 | 64 | 132 | 4.74e-28 | 109 |
| Msa0789750 | MtrunA17_Chr4g0030051 | 90.000 | 50 | 5 | 0 | 14 | 63 | 43 | 92 | 7.48e-28 | 107 |
| Msa0789750 | MtrunA17_Chr2g0328021 | 77.778 | 54 | 12 | 0 | 14 | 67 | 64 | 117 | 8.40e-28 | 107 |
| Msa0789750 | MtrunA17_Chr1g0188851 | 75.410 | 61 | 15 | 0 | 6 | 66 | 37 | 97 | 8.62e-28 | 107 |
| Msa0789750 | MtrunA17_Chr4g0031411 | 81.132 | 53 | 10 | 0 | 14 | 66 | 77 | 129 | 2.87e-27 | 107 |
| Msa0789750 | MtrunA17_Chr5g0411951 | 87.755 | 49 | 6 | 0 | 14 | 62 | 45 | 93 | 1.07e-26 | 105 |
| Msa0789750 | MtrunA17_Chr7g0223311 | 81.132 | 53 | 10 | 0 | 14 | 66 | 79 | 131 | 1.28e-26 | 105 |
| Msa0789750 | MtrunA17_Chr3g0117601 | 81.132 | 53 | 10 | 0 | 10 | 62 | 59 | 111 | 1.43e-26 | 105 |
| Msa0789750 | MtrunA17_Chr7g0237921 | 77.358 | 53 | 12 | 0 | 14 | 66 | 78 | 130 | 1.49e-26 | 105 |
| Msa0789750 | MtrunA17_Chr2g0282441 | 84.000 | 50 | 8 | 0 | 14 | 63 | 27 | 76 | 2.01e-26 | 104 |
| Msa0789750 | MtrunA17_Chr8g0341671 | 76.786 | 56 | 13 | 0 | 14 | 69 | 22 | 77 | 4.94e-26 | 101 |
| Msa0789750 | MtrunA17_Chr4g0061761 | 85.714 | 49 | 7 | 0 | 14 | 62 | 42 | 90 | 1.45e-25 | 102 |
| Msa0789750 | MtrunA17_Chr4g0010151 | 75.472 | 53 | 13 | 0 | 14 | 66 | 84 | 136 | 3.73e-25 | 101 |
| Msa0789750 | MtrunA17_Chr2g0308011 | 78.431 | 51 | 11 | 0 | 10 | 60 | 35 | 85 | 1.59e-24 | 97.1 |
| Msa0789750 | MtrunA17_Chr2g0282511 | 85.106 | 47 | 7 | 0 | 14 | 60 | 47 | 93 | 1.75e-24 | 99.0 |
| Msa0789750 | MtrunA17_Chr8g0374111 | 72.727 | 55 | 15 | 0 | 14 | 68 | 31 | 85 | 2.19e-24 | 97.1 |
| Msa0789750 | MtrunA17_Chr3g0092111 | 58.108 | 74 | 31 | 0 | 14 | 87 | 138 | 211 | 3.29e-24 | 100 |
| Msa0789750 | MtrunA17_Chr4g0047761 | 71.698 | 53 | 15 | 0 | 13 | 65 | 73 | 125 | 2.37e-23 | 96.3 |
| Msa0789750 | MtrunA17_Chr7g0217581 | 65.625 | 64 | 21 | 1 | 6 | 69 | 227 | 289 | 2.45e-23 | 98.2 |
| Msa0789750 | MtrunA17_Chr2g0282051 | 69.811 | 53 | 16 | 0 | 13 | 65 | 47 | 99 | 8.63e-23 | 94.0 |
| Msa0789750 | MtrunA17_Chr6g0453321 | 64.062 | 64 | 22 | 1 | 6 | 69 | 131 | 193 | 1.58e-22 | 95.5 |
| Msa0789750 | MtrunA17_Chr2g0283811 | 64.516 | 62 | 21 | 1 | 4 | 65 | 40 | 100 | 2.36e-22 | 90.1 |
| Msa0789750 | MtrunA17_Chr5g0417571 | 58.824 | 68 | 27 | 1 | 6 | 73 | 133 | 199 | 2.67e-22 | 93.6 |
| Msa0789750 | MtrunA17_Chr8g0355261 | 37.063 | 143 | 73 | 4 | 14 | 141 | 120 | 260 | 1.99e-21 | 92.4 |
| Msa0789750 | MtrunA17_Chr4g0042481 | 60.938 | 64 | 24 | 1 | 6 | 69 | 117 | 179 | 2.28e-21 | 92.4 |
| Msa0789750 | MtrunA17_Chr7g0254161 | 62.500 | 56 | 21 | 0 | 14 | 69 | 103 | 158 | 1.27e-20 | 89.7 |
| Msa0789750 | MtrunA17_Chr5g0417551 | 57.534 | 73 | 29 | 2 | 1 | 73 | 117 | 187 | 1.76e-20 | 89.0 |
| Msa0789750 | MtrunA17_Chr6g0460721 | 58.929 | 56 | 23 | 0 | 14 | 69 | 91 | 146 | 8.54e-20 | 86.7 |
| Msa0789750 | MtrunA17_Chr6g0460731 | 60.714 | 56 | 22 | 0 | 14 | 69 | 98 | 153 | 1.14e-19 | 86.7 |
| Msa0789750 | MtrunA17_Chr5g0417601 | 59.375 | 64 | 25 | 1 | 2 | 65 | 131 | 193 | 1.37e-19 | 86.7 |
| Msa0789750 | MtrunA17_Chr5g0417561 | 61.667 | 60 | 22 | 1 | 14 | 73 | 121 | 179 | 2.47e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789750 | AT3G52440.1 | 41.699 | 259 | 93 | 10 | 9 | 243 | 22 | 246 | 4.73e-49 | 162 |
| Msa0789750 | AT3G52440.2 | 41.699 | 259 | 93 | 10 | 9 | 243 | 41 | 265 | 7.05e-49 | 162 |
| Msa0789750 | AT1G21340.1 | 40.449 | 178 | 75 | 5 | 11 | 164 | 37 | 207 | 1.22e-33 | 122 |
| Msa0789750 | AT3G61850.2 | 73.913 | 69 | 18 | 0 | 1 | 69 | 51 | 119 | 5.63e-31 | 116 |
| Msa0789750 | AT3G61850.3 | 73.913 | 69 | 18 | 0 | 1 | 69 | 51 | 119 | 5.63e-31 | 116 |
| Msa0789750 | AT3G61850.1 | 73.913 | 69 | 18 | 0 | 1 | 69 | 63 | 131 | 7.76e-31 | 116 |
| Msa0789750 | AT5G60200.1 | 77.049 | 61 | 14 | 0 | 9 | 69 | 52 | 112 | 7.76e-31 | 115 |
| Msa0789750 | AT3G61850.5 | 73.913 | 69 | 18 | 0 | 1 | 69 | 51 | 119 | 8.26e-31 | 116 |
| Msa0789750 | AT3G61850.4 | 73.913 | 69 | 18 | 0 | 1 | 69 | 63 | 131 | 1.20e-30 | 116 |
| Msa0789750 | AT2G28510.1 | 84.211 | 57 | 9 | 0 | 13 | 69 | 49 | 105 | 1.54e-29 | 112 |
| Msa0789750 | AT4G24060.1 | 85.185 | 54 | 8 | 0 | 13 | 66 | 54 | 107 | 8.24e-29 | 111 |
| Msa0789750 | AT1G07640.2 | 50.000 | 114 | 53 | 1 | 14 | 127 | 79 | 188 | 9.27e-29 | 111 |
| Msa0789750 | AT1G07640.1 | 50.000 | 114 | 53 | 1 | 14 | 127 | 23 | 132 | 9.75e-29 | 110 |
| Msa0789750 | AT1G07640.3 | 50.000 | 114 | 53 | 1 | 14 | 127 | 87 | 196 | 1.30e-28 | 111 |
| Msa0789750 | AT5G65590.1 | 81.481 | 54 | 10 | 0 | 14 | 67 | 43 | 96 | 5.90e-28 | 108 |
| Msa0789750 | AT3G45610.1 | 76.271 | 59 | 14 | 0 | 11 | 69 | 39 | 97 | 1.62e-27 | 106 |
| Msa0789750 | AT3G55370.1 | 78.947 | 57 | 12 | 0 | 13 | 69 | 77 | 133 | 2.26e-27 | 107 |
| Msa0789750 | AT4G00940.1 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 2.28e-27 | 107 |
| Msa0789750 | AT4G00940.3 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 2.28e-27 | 107 |
| Msa0789750 | AT4G00940.2 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 2.28e-27 | 107 |
| Msa0789750 | AT2G28810.2 | 45.378 | 119 | 57 | 2 | 14 | 128 | 79 | 193 | 2.50e-27 | 107 |
| Msa0789750 | AT3G55370.3 | 78.947 | 57 | 12 | 0 | 13 | 69 | 122 | 178 | 2.75e-27 | 108 |
| Msa0789750 | AT3G55370.2 | 78.947 | 57 | 12 | 0 | 13 | 69 | 77 | 133 | 3.20e-27 | 107 |
| Msa0789750 | AT2G28810.1 | 45.378 | 119 | 57 | 2 | 14 | 128 | 96 | 210 | 3.36e-27 | 107 |
| Msa0789750 | AT2G46590.1 | 82.759 | 58 | 9 | 1 | 3 | 59 | 58 | 115 | 3.63e-27 | 107 |
| Msa0789750 | AT2G46590.2 | 93.617 | 47 | 3 | 0 | 13 | 59 | 81 | 127 | 4.28e-27 | 107 |
| Msa0789750 | AT5G60850.1 | 76.271 | 59 | 14 | 0 | 11 | 69 | 50 | 108 | 4.51e-27 | 106 |
| Msa0789750 | AT1G51700.1 | 60.494 | 81 | 26 | 2 | 14 | 94 | 35 | 109 | 6.87e-27 | 103 |
| Msa0789750 | AT2G37590.1 | 77.778 | 54 | 12 | 0 | 14 | 67 | 91 | 144 | 7.26e-27 | 106 |
| Msa0789750 | AT5G02460.1 | 77.358 | 53 | 12 | 0 | 14 | 66 | 97 | 149 | 4.18e-26 | 105 |
| Msa0789750 | AT5G62940.1 | 85.714 | 49 | 7 | 0 | 14 | 62 | 75 | 123 | 4.85e-26 | 104 |
| Msa0789750 | AT4G38000.1 | 68.750 | 64 | 20 | 0 | 7 | 70 | 36 | 99 | 1.41e-25 | 100 |
| Msa0789750 | AT4G21050.1 | 75.472 | 53 | 13 | 0 | 14 | 66 | 26 | 78 | 1.71e-25 | 99.8 |
| Msa0789750 | AT1G64620.1 | 87.755 | 49 | 6 | 0 | 13 | 61 | 50 | 98 | 1.87e-25 | 102 |
| Msa0789750 | AT3G21270.1 | 84.000 | 50 | 8 | 0 | 14 | 63 | 31 | 80 | 2.34e-25 | 99.4 |
| Msa0789750 | AT1G28310.1 | 77.358 | 53 | 12 | 0 | 14 | 66 | 29 | 81 | 2.90e-25 | 101 |
| Msa0789750 | AT3G50410.1 | 76.364 | 55 | 13 | 0 | 14 | 68 | 32 | 86 | 3.01e-25 | 100 |
| Msa0789750 | AT1G28310.2 | 77.358 | 53 | 12 | 0 | 14 | 66 | 53 | 105 | 3.90e-25 | 101 |
| Msa0789750 | AT5G66940.1 | 69.643 | 56 | 17 | 0 | 13 | 68 | 33 | 88 | 1.85e-23 | 95.1 |
| Msa0789750 | AT1G29160.1 | 61.538 | 65 | 24 | 1 | 1 | 65 | 52 | 115 | 3.48e-23 | 92.8 |
| Msa0789750 | AT4G21040.1 | 75.000 | 52 | 13 | 0 | 14 | 65 | 27 | 78 | 6.14e-23 | 93.6 |
| Msa0789750 | AT3G47500.1 | 65.625 | 64 | 21 | 1 | 6 | 69 | 105 | 167 | 6.70e-23 | 97.1 |
| Msa0789750 | AT2G34140.1 | 65.517 | 58 | 20 | 0 | 14 | 71 | 60 | 117 | 1.32e-22 | 91.3 |
| Msa0789750 | AT1G47655.1 | 78.723 | 47 | 10 | 0 | 14 | 60 | 31 | 77 | 2.14e-22 | 91.7 |
| Msa0789750 | AT1G69570.1 | 73.077 | 52 | 14 | 0 | 14 | 65 | 134 | 185 | 2.33e-22 | 95.1 |
| Msa0789750 | AT5G39660.3 | 57.333 | 75 | 31 | 1 | 6 | 80 | 133 | 206 | 9.61e-22 | 93.6 |
| Msa0789750 | AT5G39660.1 | 57.333 | 75 | 31 | 1 | 6 | 80 | 133 | 206 | 9.61e-22 | 93.6 |
| Msa0789750 | AT5G39660.2 | 57.333 | 75 | 31 | 1 | 6 | 80 | 133 | 206 | 9.61e-22 | 93.6 |
| Msa0789750 | AT4G21080.1 | 71.154 | 52 | 15 | 0 | 14 | 65 | 27 | 78 | 1.00e-21 | 90.9 |
| Msa0789750 | AT5G62430.1 | 60.317 | 63 | 24 | 1 | 6 | 68 | 49 | 110 | 3.07e-21 | 90.5 |
| Msa0789750 | AT1G26790.1 | 63.333 | 60 | 21 | 1 | 6 | 65 | 106 | 164 | 3.17e-21 | 91.7 |
| Msa0789750 | AT4G21030.1 | 60.000 | 50 | 20 | 0 | 14 | 63 | 23 | 72 | 4.19e-14 | 68.9 |
Find 46 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATGCAGACTTGTTAAT+TGG | 0.179060 | 5_3:+260189 | Msa0789750:CDS |
| CAGACTTGTTAATTGGTAAT+TGG | 0.224718 | 5_3:+260196 | Msa0789750:CDS |
| AACCAATGCAAGATCAATAT+TGG | 0.225605 | 5_3:-259737 | None:intergenic |
| CAACCTCCACCACCATTTCT+TGG | 0.233577 | 5_3:+260153 | Msa0789750:CDS |
| GAACCACATCTTGGACAATT+TGG | 0.236842 | 5_3:-259399 | None:intergenic |
| GTTGTGGATGGTAATTGTTC+TGG | 0.295167 | 5_3:-259931 | None:intergenic |
| TGATCAGGATTATGTGAATC+AGG | 0.325306 | 5_3:-259784 | None:intergenic |
| GTTTGTCATCATTTCAGAAT+TGG | 0.326626 | 5_3:-260112 | None:intergenic |
| ATCCTTGTCTAGAAAATTCA+AGG | 0.352452 | 5_3:+259827 | Msa0789750:CDS |
| GCAAAGGATGCAGAAGGTAT+TGG | 0.386602 | 5_3:+259481 | Msa0789750:CDS |
| TTCATCTTCTAGCTCTTCAT+TGG | 0.389939 | 5_3:+259702 | Msa0789750:intron |
| ACCAATGCAAGATCAATATT+GGG | 0.430318 | 5_3:-259736 | None:intergenic |
| GGATCCCTTGGAAAATCAAA+AGG | 0.446347 | 5_3:-260222 | None:intergenic |
| CTCAGAAATGTTCCTGTTGG+TGG | 0.463083 | 5_3:+259519 | Msa0789750:CDS |
| GGAGGTTGAGTGACTTGAAA+TGG | 0.465039 | 5_3:-260138 | None:intergenic |
| AATTAGAACTTGGTTTCAAA+GGG | 0.465903 | 5_3:+259893 | Msa0789750:CDS |
| AGAGTCATTTAAGGATCCCT+TGG | 0.473019 | 5_3:-260234 | None:intergenic |
| TGCAGAAGGTATTGGACAAA+AGG | 0.474750 | 5_3:+259489 | Msa0789750:CDS |
| TTTCTGCAGCCACCACCAAC+AGG | 0.485514 | 5_3:-259531 | None:intergenic |
| AATTTGTCTGAATTAGAACT+TGG | 0.496339 | 5_3:+259883 | Msa0789750:CDS |
| ACCCAATATTGATCTTGCAT+TGG | 0.497183 | 5_3:+259735 | Msa0789750:CDS |
| TCTGCATCATGAATTTGATC+AGG | 0.499238 | 5_3:-260177 | None:intergenic |
| GTGTTTGAAGAACCACATCT+TGG | 0.501582 | 5_3:-259408 | None:intergenic |
| AGAAATGTTCCTGTTGGTGG+TGG | 0.504532 | 5_3:+259522 | Msa0789750:CDS |
| ATTTGATCAGGACCAAGAAA+TGG | 0.507530 | 5_3:-260165 | None:intergenic |
| AGGCTATCGAATGTTGAAGT+TGG | 0.510893 | 5_3:+259847 | Msa0789750:CDS |
| GAATTAGAACTTGGTTTCAA+AGG | 0.520155 | 5_3:+259892 | Msa0789750:CDS |
| ACTAAAATGTGTTACTGTTG+TGG | 0.520461 | 5_3:-259947 | None:intergenic |
| TTTGAGCTACCACCTTTACC+TGG | 0.522476 | 5_3:+260051 | Msa0789750:CDS |
| GAATCCTCTTCACCAGGTAA+AGG | 0.531636 | 5_3:-260063 | None:intergenic |
| GGACCAAGAAATGGTGGTGG+AGG | 0.554806 | 5_3:-260156 | None:intergenic |
| ACCACCTTTACCTGGTGAAG+AGG | 0.564718 | 5_3:+260059 | Msa0789750:CDS |
| GATCCCTTGGAAAATCAAAA+GGG | 0.569118 | 5_3:-260221 | None:intergenic |
| GTTGAGTGACTTGAAATGGA+AGG | 0.571601 | 5_3:-260134 | None:intergenic |
| CACCAACAGGAACATTTCTG+AGG | 0.582266 | 5_3:-259518 | None:intergenic |
| TCCTCTTCACCAGGTAAAGG+TGG | 0.589467 | 5_3:-260060 | None:intergenic |
| ATGCAGACATGGAGAGTGAG+TGG | 0.591147 | 5_3:+259358 | None:intergenic |
| TCCCTCAGAAATGTTCCTGT+TGG | 0.593993 | 5_3:+259516 | Msa0789750:CDS |
| CATCACATGATCATGTATTG+TGG | 0.609822 | 5_3:+260088 | Msa0789750:CDS |
| TCAGGACCAAGAAATGGTGG+TGG | 0.616492 | 5_3:-260159 | None:intergenic |
| ACCAACAGGAACATTTCTGA+GGG | 0.622749 | 5_3:-259517 | None:intergenic |
| TCACCAAATTGTCCAAGATG+TGG | 0.624013 | 5_3:+259396 | Msa0789750:CDS |
| GATGATGAATCCTCTTCACC+AGG | 0.634001 | 5_3:-260069 | None:intergenic |
| AGAAGGTATTGGACAAAAGG+TGG | 0.645256 | 5_3:+259492 | Msa0789750:CDS |
| TGATCAGGACCAAGAAATGG+TGG | 0.649067 | 5_3:-260162 | None:intergenic |
| AAATGTGTTACTGTTGTGGA+TGG | 0.658240 | 5_3:-259943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAATTCTATCTTTTTGAA+GGG | - | chr5_3:259992-260011 | None:intergenic | 20.0% |
| !!! | ATCAATTCTATCTTTTTGAA+GGG | - | chr5_3:259992-260011 | None:intergenic | 20.0% |
| !! | ATTCTTATGATCCTATTTTG+AGG | + | chr5_3:259671-259690 | Msa0789750:intron | 25.0% |
| ! | AATTTGTCTGAATTAGAACT+TGG | + | chr5_3:259883-259902 | Msa0789750:CDS | 25.0% |
| ! | AATTAGAACTTGGTTTCAAA+GGG | + | chr5_3:259893-259912 | Msa0789750:CDS | 25.0% |
| !! | GATCAATTCTATCTTTTTGA+AGG | - | chr5_3:259993-260012 | None:intergenic | 25.0% |
| !! | ATTCTTATGATCCTATTTTG+AGG | + | chr5_3:259671-259690 | Msa0789750:intron | 25.0% |
| ! | AATTTGTCTGAATTAGAACT+TGG | + | chr5_3:259883-259902 | Msa0789750:CDS | 25.0% |
| ! | AATTAGAACTTGGTTTCAAA+GGG | + | chr5_3:259893-259912 | Msa0789750:CDS | 25.0% |
| !! | GATCAATTCTATCTTTTTGA+AGG | - | chr5_3:259993-260012 | None:intergenic | 25.0% |
| !! | CAACCAAGATATTTTTGCAA+AGG | + | chr5_3:259465-259484 | Msa0789750:CDS | 30.0% |
| CATCCTTTGCAAAAATATCT+TGG | - | chr5_3:259471-259490 | None:intergenic | 30.0% | |
| ! | TCTAAAGTAGTGTGAGAATT+AGG | - | chr5_3:259628-259647 | None:intergenic | 30.0% |
| GAAACATTAGTCCTCAAAAT+AGG | - | chr5_3:259685-259704 | None:intergenic | 30.0% | |
| ACCAATGCAAGATCAATATT+GGG | - | chr5_3:259739-259758 | None:intergenic | 30.0% | |
| AACCAATGCAAGATCAATAT+TGG | - | chr5_3:259740-259759 | None:intergenic | 30.0% | |
| !! | TTTGTTTTTCGCATTTGATC+AGG | - | chr5_3:259802-259821 | None:intergenic | 30.0% |
| ATCCTTGTCTAGAAAATTCA+AGG | + | chr5_3:259827-259846 | Msa0789750:CDS | 30.0% | |
| GAATTAGAACTTGGTTTCAA+AGG | + | chr5_3:259892-259911 | Msa0789750:CDS | 30.0% | |
| ! | ACTAAAATGTGTTACTGTTG+TGG | - | chr5_3:259950-259969 | None:intergenic | 30.0% |
| GTTTGTCATCATTTCAGAAT+TGG | - | chr5_3:260115-260134 | None:intergenic | 30.0% | |
| !! | CAGACTTGTTAATTGGTAAT+TGG | + | chr5_3:260196-260215 | Msa0789750:CDS | 30.0% |
| !! | CAACCAAGATATTTTTGCAA+AGG | + | chr5_3:259465-259484 | Msa0789750:CDS | 30.0% |
| CATCCTTTGCAAAAATATCT+TGG | - | chr5_3:259471-259490 | None:intergenic | 30.0% | |
| ! | TCTAAAGTAGTGTGAGAATT+AGG | - | chr5_3:259628-259647 | None:intergenic | 30.0% |
| GAAACATTAGTCCTCAAAAT+AGG | - | chr5_3:259685-259704 | None:intergenic | 30.0% | |
| ACCAATGCAAGATCAATATT+GGG | - | chr5_3:259739-259758 | None:intergenic | 30.0% | |
| AACCAATGCAAGATCAATAT+TGG | - | chr5_3:259740-259759 | None:intergenic | 30.0% | |
| !! | TTTGTTTTTCGCATTTGATC+AGG | - | chr5_3:259802-259821 | None:intergenic | 30.0% |
| ATCCTTGTCTAGAAAATTCA+AGG | + | chr5_3:259827-259846 | Msa0789750:CDS | 30.0% | |
| GAATTAGAACTTGGTTTCAA+AGG | + | chr5_3:259892-259911 | Msa0789750:CDS | 30.0% | |
| ! | ACTAAAATGTGTTACTGTTG+TGG | - | chr5_3:259950-259969 | None:intergenic | 30.0% |
| GTTTGTCATCATTTCAGAAT+TGG | - | chr5_3:260115-260134 | None:intergenic | 30.0% | |
| !! | CAGACTTGTTAATTGGTAAT+TGG | + | chr5_3:260196-260215 | Msa0789750:CDS | 30.0% |
| ! | ATTTTTGCAAAGGATGCAGA+AGG | + | chr5_3:259475-259494 | Msa0789750:CDS | 35.0% |
| TTTGAAAGTGAGAGAGTCAA+AGG | - | chr5_3:259599-259618 | None:intergenic | 35.0% | |
| !! | TTCATCTTCTAGCTCTTCAT+TGG | + | chr5_3:259702-259721 | Msa0789750:intron | 35.0% |
| ACCCAATATTGATCTTGCAT+TGG | + | chr5_3:259735-259754 | Msa0789750:CDS | 35.0% | |
| TGATCAGGATTATGTGAATC+AGG | - | chr5_3:259787-259806 | None:intergenic | 35.0% | |
| ! | AGCCTTGAATTTTCTAGACA+AGG | - | chr5_3:259832-259851 | None:intergenic | 35.0% |
| ! | AAATGTGTTACTGTTGTGGA+TGG | - | chr5_3:259946-259965 | None:intergenic | 35.0% |
| CATCACATGATCATGTATTG+TGG | + | chr5_3:260088-260107 | Msa0789750:CDS | 35.0% | |
| ATTTGATCAGGACCAAGAAA+TGG | - | chr5_3:260168-260187 | None:intergenic | 35.0% | |
| TCTGCATCATGAATTTGATC+AGG | - | chr5_3:260180-260199 | None:intergenic | 35.0% | |
| !! | CATGATGCAGACTTGTTAAT+TGG | + | chr5_3:260189-260208 | Msa0789750:CDS | 35.0% |
| GATCCCTTGGAAAATCAAAA+GGG | - | chr5_3:260224-260243 | None:intergenic | 35.0% | |
| ! | ATTTTTGCAAAGGATGCAGA+AGG | + | chr5_3:259475-259494 | Msa0789750:CDS | 35.0% |
| TTTGAAAGTGAGAGAGTCAA+AGG | - | chr5_3:259599-259618 | None:intergenic | 35.0% | |
| !! | TTCATCTTCTAGCTCTTCAT+TGG | + | chr5_3:259702-259721 | Msa0789750:intron | 35.0% |
| ACCCAATATTGATCTTGCAT+TGG | + | chr5_3:259735-259754 | Msa0789750:CDS | 35.0% | |
| TGATCAGGATTATGTGAATC+AGG | - | chr5_3:259787-259806 | None:intergenic | 35.0% | |
| ! | AGCCTTGAATTTTCTAGACA+AGG | - | chr5_3:259832-259851 | None:intergenic | 35.0% |
| ! | AAATGTGTTACTGTTGTGGA+TGG | - | chr5_3:259946-259965 | None:intergenic | 35.0% |
| CATCACATGATCATGTATTG+TGG | + | chr5_3:260088-260107 | Msa0789750:CDS | 35.0% | |
| ATTTGATCAGGACCAAGAAA+TGG | - | chr5_3:260168-260187 | None:intergenic | 35.0% | |
| TCTGCATCATGAATTTGATC+AGG | - | chr5_3:260180-260199 | None:intergenic | 35.0% | |
| !! | CATGATGCAGACTTGTTAAT+TGG | + | chr5_3:260189-260208 | Msa0789750:CDS | 35.0% |
| GATCCCTTGGAAAATCAAAA+GGG | - | chr5_3:260224-260243 | None:intergenic | 35.0% | |
| TCACCAAATTGTCCAAGATG+TGG | + | chr5_3:259396-259415 | Msa0789750:CDS | 40.0% | |
| GAACCACATCTTGGACAATT+TGG | - | chr5_3:259402-259421 | None:intergenic | 40.0% | |
| GTGTTTGAAGAACCACATCT+TGG | - | chr5_3:259411-259430 | None:intergenic | 40.0% | |
| !! | TGCAGAAGGTATTGGACAAA+AGG | + | chr5_3:259489-259508 | Msa0789750:CDS | 40.0% |
| !! | AGAAGGTATTGGACAAAAGG+TGG | + | chr5_3:259492-259511 | Msa0789750:CDS | 40.0% |
| ACCAACAGGAACATTTCTGA+GGG | - | chr5_3:259520-259539 | None:intergenic | 40.0% | |
| GCTGCAGAAAAAAACAGAAG+AGG | + | chr5_3:259544-259563 | Msa0789750:CDS | 40.0% | |
| !! | GTGAATCAGGCTTTTGATTG+AGG | - | chr5_3:259774-259793 | None:intergenic | 40.0% |
| AGGCTATCGAATGTTGAAGT+TGG | + | chr5_3:259847-259866 | Msa0789750:CDS | 40.0% | |
| GTTGTGGATGGTAATTGTTC+TGG | - | chr5_3:259934-259953 | None:intergenic | 40.0% | |
| GTTGAGTGACTTGAAATGGA+AGG | - | chr5_3:260137-260156 | None:intergenic | 40.0% | |
| !!! | GAGCCCTTTTGATTTTCCAA+GGG | + | chr5_3:260218-260237 | Msa0789750:CDS | 40.0% |
| GGATCCCTTGGAAAATCAAA+AGG | - | chr5_3:260225-260244 | None:intergenic | 40.0% | |
| TCACCAAATTGTCCAAGATG+TGG | + | chr5_3:259396-259415 | Msa0789750:CDS | 40.0% | |
| GAACCACATCTTGGACAATT+TGG | - | chr5_3:259402-259421 | None:intergenic | 40.0% | |
| GTGTTTGAAGAACCACATCT+TGG | - | chr5_3:259411-259430 | None:intergenic | 40.0% | |
| !! | TGCAGAAGGTATTGGACAAA+AGG | + | chr5_3:259489-259508 | Msa0789750:CDS | 40.0% |
| !! | AGAAGGTATTGGACAAAAGG+TGG | + | chr5_3:259492-259511 | Msa0789750:CDS | 40.0% |
| ACCAACAGGAACATTTCTGA+GGG | - | chr5_3:259520-259539 | None:intergenic | 40.0% | |
| GCTGCAGAAAAAAACAGAAG+AGG | + | chr5_3:259544-259563 | Msa0789750:CDS | 40.0% | |
| !! | GTGAATCAGGCTTTTGATTG+AGG | - | chr5_3:259774-259793 | None:intergenic | 40.0% |
| AGGCTATCGAATGTTGAAGT+TGG | + | chr5_3:259847-259866 | Msa0789750:CDS | 40.0% | |
| GTTGTGGATGGTAATTGTTC+TGG | - | chr5_3:259934-259953 | None:intergenic | 40.0% | |
| GTTGAGTGACTTGAAATGGA+AGG | - | chr5_3:260137-260156 | None:intergenic | 40.0% | |
| !!! | GAGCCCTTTTGATTTTCCAA+GGG | + | chr5_3:260218-260237 | Msa0789750:CDS | 40.0% |
| GGATCCCTTGGAAAATCAAA+AGG | - | chr5_3:260225-260244 | None:intergenic | 40.0% | |
| ! | GCAAAGGATGCAGAAGGTAT+TGG | + | chr5_3:259481-259500 | Msa0789750:CDS | 45.0% |
| TCCCTCAGAAATGTTCCTGT+TGG | + | chr5_3:259516-259535 | Msa0789750:CDS | 45.0% | |
| CACCAACAGGAACATTTCTG+AGG | - | chr5_3:259521-259540 | None:intergenic | 45.0% | |
| CTCAGAAATGTTCCTGTTGG+TGG | + | chr5_3:259519-259538 | Msa0789750:CDS | 45.0% | |
| ! | AGAAATGTTCCTGTTGGTGG+TGG | + | chr5_3:259522-259541 | Msa0789750:CDS | 45.0% |
| TTTGAGCTACCACCTTTACC+TGG | + | chr5_3:260051-260070 | Msa0789750:CDS | 45.0% | |
| GAATCCTCTTCACCAGGTAA+AGG | - | chr5_3:260066-260085 | None:intergenic | 45.0% | |
| GATGATGAATCCTCTTCACC+AGG | - | chr5_3:260072-260091 | None:intergenic | 45.0% | |
| GGAGGTTGAGTGACTTGAAA+TGG | - | chr5_3:260141-260160 | None:intergenic | 45.0% | |
| TGATCAGGACCAAGAAATGG+TGG | - | chr5_3:260165-260184 | None:intergenic | 45.0% | |
| !!! | GGAGCCCTTTTGATTTTCCA+AGG | + | chr5_3:260217-260236 | Msa0789750:CDS | 45.0% |
| ! | GCAAAGGATGCAGAAGGTAT+TGG | + | chr5_3:259481-259500 | Msa0789750:CDS | 45.0% |
| TCCCTCAGAAATGTTCCTGT+TGG | + | chr5_3:259516-259535 | Msa0789750:CDS | 45.0% | |
| CACCAACAGGAACATTTCTG+AGG | - | chr5_3:259521-259540 | None:intergenic | 45.0% | |
| CTCAGAAATGTTCCTGTTGG+TGG | + | chr5_3:259519-259538 | Msa0789750:CDS | 45.0% | |
| ! | AGAAATGTTCCTGTTGGTGG+TGG | + | chr5_3:259522-259541 | Msa0789750:CDS | 45.0% |
| TTTGAGCTACCACCTTTACC+TGG | + | chr5_3:260051-260070 | Msa0789750:CDS | 45.0% | |
| GAATCCTCTTCACCAGGTAA+AGG | - | chr5_3:260066-260085 | None:intergenic | 45.0% | |
| GATGATGAATCCTCTTCACC+AGG | - | chr5_3:260072-260091 | None:intergenic | 45.0% | |
| GGAGGTTGAGTGACTTGAAA+TGG | - | chr5_3:260141-260160 | None:intergenic | 45.0% | |
| TGATCAGGACCAAGAAATGG+TGG | - | chr5_3:260165-260184 | None:intergenic | 45.0% | |
| !!! | GGAGCCCTTTTGATTTTCCA+AGG | + | chr5_3:260217-260236 | Msa0789750:CDS | 45.0% |
| ACCACCTTTACCTGGTGAAG+AGG | + | chr5_3:260059-260078 | Msa0789750:CDS | 50.0% | |
| TCCTCTTCACCAGGTAAAGG+TGG | - | chr5_3:260063-260082 | None:intergenic | 50.0% | |
| CAACCTCCACCACCATTTCT+TGG | + | chr5_3:260153-260172 | Msa0789750:CDS | 50.0% | |
| TCAGGACCAAGAAATGGTGG+TGG | - | chr5_3:260162-260181 | None:intergenic | 50.0% | |
| ACCACCTTTACCTGGTGAAG+AGG | + | chr5_3:260059-260078 | Msa0789750:CDS | 50.0% | |
| TCCTCTTCACCAGGTAAAGG+TGG | - | chr5_3:260063-260082 | None:intergenic | 50.0% | |
| CAACCTCCACCACCATTTCT+TGG | + | chr5_3:260153-260172 | Msa0789750:CDS | 50.0% | |
| TCAGGACCAAGAAATGGTGG+TGG | - | chr5_3:260162-260181 | None:intergenic | 50.0% | |
| TTTCTGCAGCCACCACCAAC+AGG | - | chr5_3:259534-259553 | None:intergenic | 55.0% | |
| !! | GGACCAAGAAATGGTGGTGG+AGG | - | chr5_3:260159-260178 | None:intergenic | 55.0% |
| TTTCTGCAGCCACCACCAAC+AGG | - | chr5_3:259534-259553 | None:intergenic | 55.0% | |
| !! | GGACCAAGAAATGGTGGTGG+AGG | - | chr5_3:260159-260178 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 259366 | 260248 | 259366 | ID=Msa0789750;Name=Msa0789750 |
| chr5_3 | mRNA | 259366 | 260248 | 259366 | ID=Msa0789750-mRNA-1;Parent=Msa0789750;Name=Msa0789750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|244 |
| chr5_3 | exon | 259366 | 259565 | 259366 | ID=Msa0789750-mRNA-1:exon:77;Parent=Msa0789750-mRNA-1 |
| chr5_3 | exon | 259714 | 260248 | 259714 | ID=Msa0789750-mRNA-1:exon:78;Parent=Msa0789750-mRNA-1 |
| chr5_3 | CDS | 259366 | 259565 | 259366 | ID=Msa0789750-mRNA-1:cds;Parent=Msa0789750-mRNA-1 |
| chr5_3 | CDS | 259714 | 260248 | 259714 | ID=Msa0789750-mRNA-1:cds;Parent=Msa0789750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
