Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391000 | XP_003597300.2 | 95.219 | 251 | 8 | 2 | 1 | 247 | 1 | 251 | 5.89e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391000 | Q2HU26 | 95.219 | 251 | 8 | 2 | 1 | 247 | 1 | 251 | 2.81e-172 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0391000 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222650 | Msa0391000 | 0.882556 | 9.436193e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391000 | MtrunA17_Chr2g0327621 | 95.219 | 251 | 8 | 2 | 1 | 247 | 1 | 251 | 5.42e-176 | 484 |
| Msa0391000 | MtrunA17_Chr4g0030421 | 65.909 | 132 | 43 | 2 | 118 | 247 | 1 | 132 | 1.12e-49 | 159 |
| Msa0391000 | MtrunA17_Chr8g0387241 | 48.101 | 158 | 62 | 7 | 55 | 202 | 132 | 279 | 8.72e-29 | 110 |
| Msa0391000 | MtrunA17_Chr5g0397361 | 43.860 | 114 | 43 | 2 | 87 | 200 | 130 | 222 | 4.24e-21 | 89.0 |
| Msa0391000 | MtrunA17_Chr1g0186171 | 46.000 | 100 | 47 | 2 | 102 | 196 | 264 | 361 | 3.70e-20 | 88.6 |
| Msa0391000 | MtrunA17_Chr2g0311591 | 74.074 | 54 | 14 | 0 | 142 | 195 | 161 | 214 | 4.70e-20 | 86.7 |
| Msa0391000 | MtrunA17_Chr1g0168401 | 43.878 | 98 | 51 | 1 | 103 | 196 | 267 | 364 | 3.30e-19 | 85.9 |
| Msa0391000 | MtrunA17_Chr4g0030411 | 51.807 | 83 | 36 | 1 | 33 | 115 | 29 | 107 | 1.66e-17 | 76.3 |
| Msa0391000 | MtrunA17_Chr1g0147111 | 32.867 | 143 | 79 | 4 | 62 | 199 | 150 | 280 | 2.28e-16 | 76.6 |
| Msa0391000 | MtrunA17_Chr3g0126721 | 57.692 | 52 | 22 | 0 | 147 | 198 | 226 | 277 | 4.30e-15 | 73.2 |
| Msa0391000 | MtrunA17_Chr1g0150471 | 42.188 | 64 | 37 | 0 | 140 | 203 | 244 | 307 | 2.52e-11 | 62.4 |
| Msa0391000 | MtrunA17_Chr4g0072871 | 44.262 | 61 | 31 | 1 | 137 | 197 | 287 | 344 | 4.32e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391000 | AT5G59990.1 | 46.951 | 164 | 69 | 3 | 66 | 229 | 91 | 236 | 1.09e-32 | 119 |
| Msa0391000 | AT5G41380.1 | 42.697 | 178 | 73 | 7 | 72 | 243 | 151 | 305 | 1.53e-30 | 115 |
| Msa0391000 | AT1G63820.1 | 47.581 | 124 | 56 | 2 | 103 | 221 | 139 | 258 | 7.61e-28 | 108 |
| Msa0391000 | AT1G04500.3 | 35.632 | 174 | 81 | 5 | 34 | 196 | 171 | 324 | 4.20e-24 | 99.8 |
| Msa0391000 | AT1G04500.4 | 35.632 | 174 | 81 | 5 | 34 | 196 | 180 | 333 | 4.26e-24 | 99.8 |
| Msa0391000 | AT1G04500.1 | 35.632 | 174 | 81 | 5 | 34 | 196 | 180 | 333 | 4.26e-24 | 99.8 |
| Msa0391000 | AT2G33350.4 | 46.535 | 101 | 47 | 2 | 103 | 196 | 244 | 344 | 2.20e-23 | 97.8 |
| Msa0391000 | AT2G33350.2 | 46.535 | 101 | 47 | 2 | 103 | 196 | 255 | 355 | 2.42e-23 | 97.8 |
| Msa0391000 | AT2G33350.5 | 46.535 | 101 | 47 | 2 | 103 | 196 | 264 | 364 | 3.24e-23 | 97.4 |
| Msa0391000 | AT2G33350.1 | 46.078 | 102 | 47 | 3 | 103 | 196 | 255 | 356 | 3.97e-22 | 94.4 |
| Msa0391000 | AT3G12890.1 | 54.651 | 86 | 38 | 1 | 131 | 215 | 119 | 204 | 6.10e-22 | 91.7 |
| Msa0391000 | AT5G53420.2 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.33e-16 | 75.1 |
| Msa0391000 | AT5G53420.5 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.33e-16 | 75.1 |
| Msa0391000 | AT5G53420.4 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.33e-16 | 75.1 |
| Msa0391000 | AT5G53420.1 | 34.884 | 129 | 68 | 4 | 68 | 195 | 149 | 262 | 4.23e-16 | 75.9 |
| Msa0391000 | AT5G59990.2 | 45.872 | 109 | 46 | 2 | 66 | 174 | 91 | 186 | 3.65e-15 | 72.0 |
| Msa0391000 | AT4G27900.1 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.17e-14 | 72.0 |
| Msa0391000 | AT4G27900.2 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.17e-14 | 72.0 |
| Msa0391000 | AT2G24790.1 | 43.056 | 72 | 37 | 1 | 125 | 192 | 199 | 270 | 3.93e-11 | 62.4 |
| Msa0391000 | AT5G15850.1 | 45.283 | 53 | 29 | 0 | 147 | 199 | 282 | 334 | 5.33e-11 | 62.4 |
| Msa0391000 | AT5G24930.1 | 43.333 | 60 | 34 | 0 | 139 | 198 | 283 | 342 | 8.07e-11 | 61.6 |
Find 62 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTCCTTCTCCATTTA+TGG | 0.057189 | 3_2:+2240316 | Msa0391000:CDS |
| CGGATAGGAGGCCACGAATT+AGG | 0.208419 | 3_2:+2242181 | Msa0391000:CDS |
| GAACTTTAACAAGAAAATTA+AGG | 0.269338 | 3_2:+2241167 | Msa0391000:CDS |
| GGATAGGAGGCCACGAATTA+GGG | 0.287165 | 3_2:+2242182 | Msa0391000:CDS |
| AGGATGAAGAAGATGAAAAT+TGG | 0.295769 | 3_2:+2242280 | Msa0391000:CDS |
| AACAAGATTTGCAGCAACTA+TGG | 0.316149 | 3_2:-2242319 | None:intergenic |
| CATTCCCTTCAGTACAATAA+TGG | 0.321357 | 3_2:+2240485 | Msa0391000:CDS |
| TCAGGGATATGTTCCATAAA+TGG | 0.329934 | 3_2:-2240329 | None:intergenic |
| TTGCAGTACCGGCGATTTGC+AGG | 0.339328 | 3_2:+2240580 | Msa0391000:CDS |
| TTTCAAGGAAGTTCTTCCTT+TGG | 0.354729 | 3_2:+2242351 | Msa0391000:CDS |
| GAGTCTAACTCATTGAAATC+AGG | 0.374546 | 3_2:-2240347 | None:intergenic |
| CTTGTTCATGATGAGTTTCA+AGG | 0.385277 | 3_2:+2242336 | Msa0391000:CDS |
| TCCTATCCGCCAATGTCTTT+CGG | 0.395899 | 3_2:-2242167 | None:intergenic |
| ATGTGGCTCCACTCGACTAT+AGG | 0.406095 | 3_2:-2242240 | None:intergenic |
| TGTATTATTGAATCAAACTT+TGG | 0.409644 | 3_2:+2242613 | Msa0391000:three_prime_UTR |
| GAAAGTAGTATGATCATAGA+AGG | 0.422699 | 3_2:+2241066 | Msa0391000:CDS |
| ATTCCCTTCAGTACAATAAT+GGG | 0.429789 | 3_2:+2240486 | Msa0391000:CDS |
| TGCATCAAGATTGGAGTACT+TGG | 0.434559 | 3_2:-2240446 | None:intergenic |
| ATGCTCCTCTGCATCAAGAT+TGG | 0.438379 | 3_2:-2240455 | None:intergenic |
| GTCGAGTGGAGCCACATTGA+TGG | 0.456902 | 3_2:+2242246 | Msa0391000:CDS |
| GAAGGAGATGGAAGAAGAAA+GGG | 0.457613 | 3_2:-2240305 | None:intergenic |
| AGAAGGAGATGGAAGAAGAA+AGG | 0.460726 | 3_2:-2240306 | None:intergenic |
| AGAAGAAAGGGTGTTGAGAA+TGG | 0.469563 | 3_2:-2240293 | None:intergenic |
| CATTGATGGTGGGGAGGAAG+AGG | 0.475444 | 3_2:+2242260 | Msa0391000:CDS |
| GTGAGGAAAGTTTGCAGTAC+CGG | 0.479206 | 3_2:+2240569 | Msa0391000:CDS |
| TTGAAAGATACAGAAGAAAG+AGG | 0.482706 | 3_2:+2241136 | Msa0391000:CDS |
| AATGAAATGTCAAGTGTGTA+TGG | 0.491009 | 3_2:-2240174 | None:intergenic |
| TGTTGAGAATGGAATATTGT+TGG | 0.508851 | 3_2:-2240282 | None:intergenic |
| GCTCGACTCAGACGATGCTC+CGG | 0.525201 | 3_2:+2240547 | Msa0391000:CDS |
| GCAAAACGTCCCCTAATTCG+TGG | 0.530988 | 3_2:-2242192 | None:intergenic |
| AGCAGTGGCTATAGTAGCTA+TGG | 0.535103 | 3_2:+2240410 | Msa0391000:CDS |
| AGTCTAACTCATTGAAATCA+GGG | 0.536173 | 3_2:-2240346 | None:intergenic |
| GAGTCCCATTATTGTACTGA+AGG | 0.542232 | 3_2:-2240490 | None:intergenic |
| GCCGAAAGACATTGGCGGAT+AGG | 0.550818 | 3_2:+2242166 | Msa0391000:CDS |
| ACAGAAGAAAGAGGAATCAG+AGG | 0.553930 | 3_2:+2241145 | Msa0391000:CDS |
| GTATGTTTGCCGAAAGACAT+TGG | 0.562441 | 3_2:+2242158 | Msa0391000:intron |
| GAAAGACATTGGCGGATAGG+AGG | 0.570627 | 3_2:+2242169 | Msa0391000:CDS |
| TCCATAAATGGAGAAGGAGA+TGG | 0.571408 | 3_2:-2240317 | None:intergenic |
| TCAACTCCGAGTTATTCAGC+TGG | 0.581544 | 3_2:-2240388 | None:intergenic |
| GAGTGGAGCCACATTGATGG+TGG | 0.581767 | 3_2:+2242249 | Msa0391000:CDS |
| TCAGCTGGGAGAGAGTGTCT+TGG | 0.586821 | 3_2:-2240373 | None:intergenic |
| AGTGGAGCCACATTGATGGT+GGG | 0.589638 | 3_2:+2242250 | Msa0391000:CDS |
| GTACTCCAATCTTGATGCAG+AGG | 0.591070 | 3_2:+2240450 | Msa0391000:CDS |
| ATACTACTTTCACTAGACAA+TGG | 0.602525 | 3_2:-2241054 | None:intergenic |
| AAGATTGGAGTACTTGGAGA+AGG | 0.605160 | 3_2:-2240440 | None:intergenic |
| CAACTCCGAGTTATTCAGCT+GGG | 0.608456 | 3_2:-2240387 | None:intergenic |
| ATATGTTCCATAAATGGAGA+AGG | 0.614198 | 3_2:-2240323 | None:intergenic |
| GTACTGCAAACTTTCCTCAC+CGG | 0.616956 | 3_2:-2240566 | None:intergenic |
| AGTCCCATTATTGTACTGAA+GGG | 0.624751 | 3_2:-2240489 | None:intergenic |
| GAGCCACATTGATGGTGGGG+AGG | 0.631445 | 3_2:+2242254 | Msa0391000:CDS |
| CTTCCTCCCCACCATCAATG+TGG | 0.631535 | 3_2:-2242257 | None:intergenic |
| GTGGAGCCACATTGATGGTG+GGG | 0.632329 | 3_2:+2242251 | Msa0391000:CDS |
| ATTCTAATATAATAGACCAA+AGG | 0.637951 | 3_2:-2242367 | None:intergenic |
| GATAGGAGGCCACGAATTAG+GGG | 0.642140 | 3_2:+2242183 | Msa0391000:CDS |
| ATAGTGTACCTGCAAATCGC+CGG | 0.645719 | 3_2:-2240588 | None:intergenic |
| AGTGGCTATAGTAGCTATGG+TGG | 0.656066 | 3_2:+2240413 | Msa0391000:CDS |
| TCTCTCCCAGCTGAATAACT+CGG | 0.662391 | 3_2:+2240382 | Msa0391000:CDS |
| ATAAGAAACCTATAGTCGAG+TGG | 0.670337 | 3_2:+2242232 | Msa0391000:CDS |
| ACTCAGACGATGCTCCGGTG+AGG | 0.675434 | 3_2:+2240552 | Msa0391000:CDS |
| AATAACTCGGAGTTGAGCAG+TGG | 0.681830 | 3_2:+2240395 | Msa0391000:CDS |
| TGTTTGCCGAAAGACATTGG+CGG | 0.695673 | 3_2:+2242161 | Msa0391000:CDS |
| GCAACATAATCATCATCACG+TGG | 0.724747 | 3_2:+2241026 | Msa0391000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAATTTTTTTTTTTTTG+CGG | - | chr3_2:2240835-2240854 | None:intergenic | 10.0% |
| !!! | ACGTTAAACTTTTTTTTTTT+TGG | + | chr3_2:2240672-2240691 | Msa0391000:intron | 15.0% |
| !!! | TATTTAAGAATGCTTTTTTA+AGG | + | chr3_2:2240940-2240959 | Msa0391000:intron | 15.0% |
| !!! | ATTTAAGAATGCTTTTTTAA+GGG | + | chr3_2:2240941-2240960 | Msa0391000:intron | 15.0% |
| !!! | GAGTATATTGTTATTAATAA+GGG | - | chr3_2:2241789-2241808 | None:intergenic | 15.0% |
| !!! | GTACAATAATACTTTAAAAA+TGG | - | chr3_2:2242437-2242456 | None:intergenic | 15.0% |
| !!! | TCGCATTTTAATAATTTTAG+AGG | + | chr3_2:2240638-2240657 | Msa0391000:intron | 20.0% |
| !! | TGCAATTAAGGTTTAAATAA+TGG | - | chr3_2:2240735-2240754 | None:intergenic | 20.0% |
| !! | TAAAAAAAACCATGAATTTG+TGG | - | chr3_2:2240764-2240783 | None:intergenic | 20.0% |
| !! | GAACTTTAACAAGAAAATTA+AGG | + | chr3_2:2241167-2241186 | Msa0391000:CDS | 20.0% |
| !! | ATAAAAAGAACAAGAAGTAA+TGG | + | chr3_2:2241339-2241358 | Msa0391000:intron | 20.0% |
| !! | TGATAGAAAATTTCATAAAG+GGG | - | chr3_2:2241403-2241422 | None:intergenic | 20.0% |
| !! | GTGATAGAAAATTTCATAAA+GGG | - | chr3_2:2241404-2241423 | None:intergenic | 20.0% |
| !! | AGTGATAGAAAATTTCATAA+AGG | - | chr3_2:2241405-2241424 | None:intergenic | 20.0% |
| !! | TGGTGAAAAAATAAATTCAT+TGG | + | chr3_2:2241478-2241497 | Msa0391000:intron | 20.0% |
| !! | AACTAATTACTCATGTATAA+GGG | - | chr3_2:2241515-2241534 | None:intergenic | 20.0% |
| !! | TAACTAATTACTCATGTATA+AGG | - | chr3_2:2241516-2241535 | None:intergenic | 20.0% |
| !!! | GGAGTATATTGTTATTAATA+AGG | - | chr3_2:2241790-2241809 | None:intergenic | 20.0% |
| !!! | ACAGTATACATTTTTTTTGA+AGG | - | chr3_2:2241845-2241864 | None:intergenic | 20.0% |
| !! | TACAAATTATTGTCATATAG+TGG | + | chr3_2:2242019-2242038 | Msa0391000:intron | 20.0% |
| !! | ATTCTAATATAATAGACCAA+AGG | - | chr3_2:2242370-2242389 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTATTATTGTACG+TGG | + | chr3_2:2242438-2242457 | Msa0391000:three_prime_UTR | 20.0% |
| !! | TGTATTATTGAATCAAACTT+TGG | + | chr3_2:2242613-2242632 | Msa0391000:three_prime_UTR | 20.0% |
| ! | ATAACTTTGTGCATTTCTTT+AGG | - | chr3_2:2240885-2240904 | None:intergenic | 25.0% |
| !!! | TGAATTTATTTTTTCACCAG+TGG | - | chr3_2:2241477-2241496 | None:intergenic | 25.0% |
| ! | TACATGTACACTATGAATTT+GGG | - | chr3_2:2241811-2241830 | None:intergenic | 25.0% |
| ! | ATACATGTACACTATGAATT+TGG | - | chr3_2:2241812-2241831 | None:intergenic | 25.0% |
| !!! | ATACTGTTTATTGATTCTAG+TGG | + | chr3_2:2241858-2241877 | Msa0391000:intron | 25.0% |
| ! | AATTTGTACTAAATAGCGTA+TGG | - | chr3_2:2242007-2242026 | None:intergenic | 25.0% |
| !! | AACTCTAAAAACTGCATATA+TGG | - | chr3_2:2242529-2242548 | None:intergenic | 25.0% |
| ! | AAGTCCTATAAAAAGATATG+GGG | - | chr3_2:2242576-2242595 | None:intergenic | 25.0% |
| ! | CAAGTCCTATAAAAAGATAT+GGG | - | chr3_2:2242577-2242596 | None:intergenic | 25.0% |
| AATGAAATGTCAAGTGTGTA+TGG | - | chr3_2:2240177-2240196 | None:intergenic | 30.0% | |
| TGTTGAGAATGGAATATTGT+TGG | - | chr3_2:2240285-2240304 | None:intergenic | 30.0% | |
| ATATGTTCCATAAATGGAGA+AGG | - | chr3_2:2240326-2240345 | None:intergenic | 30.0% | |
| AGTCTAACTCATTGAAATCA+GGG | - | chr3_2:2240349-2240368 | None:intergenic | 30.0% | |
| ATTCCCTTCAGTACAATAAT+GGG | + | chr3_2:2240486-2240505 | Msa0391000:CDS | 30.0% | |
| !!! | ATTGTTTTAGATTGCAGTTG+TGG | + | chr3_2:2240615-2240634 | Msa0391000:intron | 30.0% |
| ATACTACTTTCACTAGACAA+TGG | - | chr3_2:2241057-2241076 | None:intergenic | 30.0% | |
| GAAAGTAGTATGATCATAGA+AGG | + | chr3_2:2241066-2241085 | Msa0391000:CDS | 30.0% | |
| ! | TTCTCACTTTCTTTTCTTCT+GGG | - | chr3_2:2241116-2241135 | None:intergenic | 30.0% |
| ! | ATTCTCACTTTCTTTTCTTC+TGG | - | chr3_2:2241117-2241136 | None:intergenic | 30.0% |
| TTGAAAGATACAGAAGAAAG+AGG | + | chr3_2:2241136-2241155 | Msa0391000:CDS | 30.0% | |
| CAAAGAGGAAAATAAATGCA+TGG | + | chr3_2:2241373-2241392 | Msa0391000:intron | 30.0% | |
| CTAAAAGACACTTCAAATCA+TGG | - | chr3_2:2241621-2241640 | None:intergenic | 30.0% | |
| CCTAAATGGTAGTATAATGA+TGG | - | chr3_2:2241885-2241904 | None:intergenic | 30.0% | |
| CCATCATTATACTACCATTT+AGG | + | chr3_2:2241882-2241901 | Msa0391000:intron | 30.0% | |
| !!! | CGAGTTTTTTCATACCTAAA+TGG | - | chr3_2:2241899-2241918 | None:intergenic | 30.0% |
| AACTCGATTAGAATATTGAC+CGG | + | chr3_2:2241913-2241932 | Msa0391000:intron | 30.0% | |
| !! | AGCGTTATAGCATTTTAGTA+CGG | + | chr3_2:2242049-2242068 | Msa0391000:intron | 30.0% |
| AGGATGAAGAAGATGAAAAT+TGG | + | chr3_2:2242280-2242299 | Msa0391000:CDS | 30.0% | |
| CCAAGTCCTATAAAAAGATA+TGG | - | chr3_2:2242578-2242597 | None:intergenic | 30.0% | |
| ! | CCATATCTTTTTATAGGACT+TGG | + | chr3_2:2242575-2242594 | Msa0391000:three_prime_UTR | 30.0% |
| TCAGGGATATGTTCCATAAA+TGG | - | chr3_2:2240332-2240351 | None:intergenic | 35.0% | |
| GAGTCTAACTCATTGAAATC+AGG | - | chr3_2:2240350-2240369 | None:intergenic | 35.0% | |
| CATTCCCTTCAGTACAATAA+TGG | + | chr3_2:2240485-2240504 | Msa0391000:CDS | 35.0% | |
| AGTCCCATTATTGTACTGAA+GGG | - | chr3_2:2240492-2240511 | None:intergenic | 35.0% | |
| GAGCAATTCAGCAAAAAAAG+CGG | - | chr3_2:2240531-2240550 | None:intergenic | 35.0% | |
| TTGTGGTTATGCTGCAATTA+AGG | - | chr3_2:2240747-2240766 | None:intergenic | 35.0% | |
| ! | CGTTTTTCACAGAGGATTAA+CGG | + | chr3_2:2241000-2241019 | Msa0391000:intron | 35.0% |
| ! | TTCTTTTCTTCTGGGCTATA+TGG | - | chr3_2:2241108-2241127 | None:intergenic | 35.0% |
| ATGGACAAAACTGTACAAAG+AGG | + | chr3_2:2241358-2241377 | Msa0391000:intron | 35.0% | |
| TAGTCAGTGTATATAGCAAC+AGG | + | chr3_2:2241638-2241657 | Msa0391000:intron | 35.0% | |
| ! | AACAGGTTCAGAATTTTGTG+AGG | + | chr3_2:2241655-2241674 | Msa0391000:intron | 35.0% |
| GAGGTGTGAAAATCTTCTTA+CGG | + | chr3_2:2241674-2241693 | Msa0391000:intron | 35.0% | |
| ! | TTGTTATTAATAAGGGCGTG+TGG | - | chr3_2:2241782-2241801 | None:intergenic | 35.0% |
| GCTAATTGCTATAACTGGTT+TGG | - | chr3_2:2241944-2241963 | None:intergenic | 35.0% | |
| ! | GTGTTGCTAATTGCTATAAC+TGG | - | chr3_2:2241949-2241968 | None:intergenic | 35.0% |
| !! | GTTATAGCATTTTAGTACGG+TGG | + | chr3_2:2242052-2242071 | Msa0391000:intron | 35.0% |
| ATAAGAAACCTATAGTCGAG+TGG | + | chr3_2:2242232-2242251 | Msa0391000:CDS | 35.0% | |
| AACAAGATTTGCAGCAACTA+TGG | - | chr3_2:2242322-2242341 | None:intergenic | 35.0% | |
| CTTGTTCATGATGAGTTTCA+AGG | + | chr3_2:2242336-2242355 | Msa0391000:CDS | 35.0% | |
| TTTCAAGGAAGTTCTTCCTT+TGG | + | chr3_2:2242351-2242370 | Msa0391000:CDS | 35.0% | |
| !!! | CAGTTTTTAGAGTTCAGTCA+GGG | + | chr3_2:2242535-2242554 | Msa0391000:three_prime_UTR | 35.0% |
| !!! | AGTTTTTAGAGTTCAGTCAG+GGG | + | chr3_2:2242536-2242555 | Msa0391000:three_prime_UTR | 35.0% |
| ! | AGTGCCCCATATCTTTTTAT+AGG | + | chr3_2:2242569-2242588 | Msa0391000:three_prime_UTR | 35.0% |
| !! | AGAAGAAAGGGTGTTGAGAA+TGG | - | chr3_2:2240296-2240315 | None:intergenic | 40.0% |
| GAAGGAGATGGAAGAAGAAA+GGG | - | chr3_2:2240308-2240327 | None:intergenic | 40.0% | |
| AGAAGGAGATGGAAGAAGAA+AGG | - | chr3_2:2240309-2240328 | None:intergenic | 40.0% | |
| TCCATCTCCTTCTCCATTTA+TGG | + | chr3_2:2240316-2240335 | Msa0391000:CDS | 40.0% | |
| TCCATAAATGGAGAAGGAGA+TGG | - | chr3_2:2240320-2240339 | None:intergenic | 40.0% | |
| ! | AAGATTGGAGTACTTGGAGA+AGG | - | chr3_2:2240443-2240462 | None:intergenic | 40.0% |
| ! | TGCATCAAGATTGGAGTACT+TGG | - | chr3_2:2240449-2240468 | None:intergenic | 40.0% |
| GAGTCCCATTATTGTACTGA+AGG | - | chr3_2:2240493-2240512 | None:intergenic | 40.0% | |
| TTCAGCAAAAAAAGCGGAGA+GGG | - | chr3_2:2240525-2240544 | None:intergenic | 40.0% | |
| ATTCAGCAAAAAAAGCGGAG+AGG | - | chr3_2:2240526-2240545 | None:intergenic | 40.0% | |
| GCAGCATAACCACAAATTCA+TGG | + | chr3_2:2240752-2240771 | Msa0391000:intron | 40.0% | |
| TGCATTTCTTTAGGTACGCT+TGG | - | chr3_2:2240876-2240895 | None:intergenic | 40.0% | |
| ! | TCATGCAACGTTTTTCACAG+AGG | + | chr3_2:2240992-2241011 | Msa0391000:intron | 40.0% |
| GCAACATAATCATCATCACG+TGG | + | chr3_2:2241026-2241045 | Msa0391000:CDS | 40.0% | |
| ACAGAAGAAAGAGGAATCAG+AGG | + | chr3_2:2241145-2241164 | Msa0391000:CDS | 40.0% | |
| CTTGGAGAACAGAATCAATC+AGG | + | chr3_2:2241745-2241764 | Msa0391000:intron | 40.0% | |
| !! | TATAACTGGTTTGGCAACAC+CGG | - | chr3_2:2241935-2241954 | None:intergenic | 40.0% |
| GTATGTTTGCCGAAAGACAT+TGG | + | chr3_2:2242158-2242177 | Msa0391000:intron | 40.0% | |
| !!! | GCAGTTTTTAGAGTTCAGTC+AGG | + | chr3_2:2242534-2242553 | Msa0391000:three_prime_UTR | 40.0% |
| TCTCTCCCAGCTGAATAACT+CGG | + | chr3_2:2240382-2240401 | Msa0391000:CDS | 45.0% | |
| CAACTCCGAGTTATTCAGCT+GGG | - | chr3_2:2240390-2240409 | None:intergenic | 45.0% | |
| TCAACTCCGAGTTATTCAGC+TGG | - | chr3_2:2240391-2240410 | None:intergenic | 45.0% | |
| AATAACTCGGAGTTGAGCAG+TGG | + | chr3_2:2240395-2240414 | Msa0391000:CDS | 45.0% | |
| AGCAGTGGCTATAGTAGCTA+TGG | + | chr3_2:2240410-2240429 | Msa0391000:CDS | 45.0% | |
| AGTGGCTATAGTAGCTATGG+TGG | + | chr3_2:2240413-2240432 | Msa0391000:CDS | 45.0% | |
| GTACTCCAATCTTGATGCAG+AGG | + | chr3_2:2240450-2240469 | Msa0391000:CDS | 45.0% | |
| ATGCTCCTCTGCATCAAGAT+TGG | - | chr3_2:2240458-2240477 | None:intergenic | 45.0% | |
| AAAAAGCGGAGAGGGGATAA+TGG | - | chr3_2:2240517-2240536 | None:intergenic | 45.0% | |
| TCAGCAAAAAAAGCGGAGAG+GGG | - | chr3_2:2240524-2240543 | None:intergenic | 45.0% | |
| GTACTGCAAACTTTCCTCAC+CGG | - | chr3_2:2240569-2240588 | None:intergenic | 45.0% | |
| GTGAGGAAAGTTTGCAGTAC+CGG | + | chr3_2:2240569-2240588 | Msa0391000:CDS | 45.0% | |
| ATAGTGTACCTGCAAATCGC+CGG | - | chr3_2:2240591-2240610 | None:intergenic | 45.0% | |
| CTCCATTCCTGTCAAGATCT+TGG | + | chr3_2:2241727-2241746 | Msa0391000:intron | 45.0% | |
| CTCCAAGATCTTGACAGGAA+TGG | - | chr3_2:2241732-2241751 | None:intergenic | 45.0% | |
| CTGTTCTCCAAGATCTTGAC+AGG | - | chr3_2:2241737-2241756 | None:intergenic | 45.0% | |
| TGTTTGCCGAAAGACATTGG+CGG | + | chr3_2:2242161-2242180 | Msa0391000:CDS | 45.0% | |
| TCCTATCCGCCAATGTCTTT+CGG | - | chr3_2:2242170-2242189 | None:intergenic | 45.0% | |
| !!! | TTAAATTTTAATTTTTTTTG+CGG | - | chr3_2:2240800-2240819 | None:intergenic | 5.0% |
| CTTATGCATGCTACCTCCAC+AGG | + | chr3_2:2241442-2241461 | Msa0391000:intron | 50.0% | |
| ! | GAAAGACATTGGCGGATAGG+AGG | + | chr3_2:2242169-2242188 | Msa0391000:CDS | 50.0% |
| GGATAGGAGGCCACGAATTA+GGG | + | chr3_2:2242182-2242201 | Msa0391000:CDS | 50.0% | |
| GATAGGAGGCCACGAATTAG+GGG | + | chr3_2:2242183-2242202 | Msa0391000:CDS | 50.0% | |
| GCAAAACGTCCCCTAATTCG+TGG | - | chr3_2:2242195-2242214 | None:intergenic | 50.0% | |
| ATGTGGCTCCACTCGACTAT+AGG | - | chr3_2:2242243-2242262 | None:intergenic | 50.0% | |
| ! | AGTGGAGCCACATTGATGGT+GGG | + | chr3_2:2242250-2242269 | Msa0391000:CDS | 50.0% |
| !! | TCAGCTGGGAGAGAGTGTCT+TGG | - | chr3_2:2240376-2240395 | None:intergenic | 55.0% |
| !! | TTGCAGTACCGGCGATTTGC+AGG | + | chr3_2:2240580-2240599 | Msa0391000:CDS | 55.0% |
| ! | GCCGAAAGACATTGGCGGAT+AGG | + | chr3_2:2242166-2242185 | Msa0391000:CDS | 55.0% |
| CGGATAGGAGGCCACGAATT+AGG | + | chr3_2:2242181-2242200 | Msa0391000:CDS | 55.0% | |
| GTCGAGTGGAGCCACATTGA+TGG | + | chr3_2:2242246-2242265 | Msa0391000:CDS | 55.0% | |
| GAGTGGAGCCACATTGATGG+TGG | + | chr3_2:2242249-2242268 | Msa0391000:CDS | 55.0% | |
| !! | GTGGAGCCACATTGATGGTG+GGG | + | chr3_2:2242251-2242270 | Msa0391000:CDS | 55.0% |
| CTTCCTCCCCACCATCAATG+TGG | - | chr3_2:2242260-2242279 | None:intergenic | 55.0% | |
| !! | CATTGATGGTGGGGAGGAAG+AGG | + | chr3_2:2242260-2242279 | Msa0391000:CDS | 55.0% |
| GCTCGACTCAGACGATGCTC+CGG | + | chr3_2:2240547-2240566 | Msa0391000:CDS | 60.0% | |
| ACTCAGACGATGCTCCGGTG+AGG | + | chr3_2:2240552-2240571 | Msa0391000:CDS | 60.0% | |
| GTGGCAGTGTCTACCTGTGG+AGG | - | chr3_2:2241458-2241477 | None:intergenic | 60.0% | |
| CCAGTGGCAGTGTCTACCTG+TGG | - | chr3_2:2241461-2241480 | None:intergenic | 60.0% | |
| CCACAGGTAGACACTGCCAC+TGG | + | chr3_2:2241458-2241477 | Msa0391000:intron | 60.0% | |
| !! | GAGCCACATTGATGGTGGGG+AGG | + | chr3_2:2242254-2242273 | Msa0391000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 2240125 | 2242673 | 2240125 | ID=Msa0391000;Name=Msa0391000 |
| chr3_2 | mRNA | 2240125 | 2242673 | 2240125 | ID=Msa0391000-mRNA-1;Parent=Msa0391000;Name=Msa0391000-mRNA-1;_AED=0.17;_eAED=0.17;_QI=138|1|1|1|1|1|3|287|247 |
| chr3_2 | exon | 2240125 | 2240601 | 2240125 | ID=Msa0391000-mRNA-1:exon:715;Parent=Msa0391000-mRNA-1 |
| chr3_2 | exon | 2241012 | 2241188 | 2241012 | ID=Msa0391000-mRNA-1:exon:716;Parent=Msa0391000-mRNA-1 |
| chr3_2 | exon | 2242159 | 2242673 | 2242159 | ID=Msa0391000-mRNA-1:exon:717;Parent=Msa0391000-mRNA-1 |
| chr3_2 | five_prime_UTR | 2240125 | 2240262 | 2240125 | ID=Msa0391000-mRNA-1:five_prime_utr;Parent=Msa0391000-mRNA-1 |
| chr3_2 | CDS | 2240263 | 2240601 | 2240263 | ID=Msa0391000-mRNA-1:cds;Parent=Msa0391000-mRNA-1 |
| chr3_2 | CDS | 2241012 | 2241188 | 2241012 | ID=Msa0391000-mRNA-1:cds;Parent=Msa0391000-mRNA-1 |
| chr3_2 | CDS | 2242159 | 2242386 | 2242159 | ID=Msa0391000-mRNA-1:cds;Parent=Msa0391000-mRNA-1 |
| chr3_2 | three_prime_UTR | 2242387 | 2242673 | 2242387 | ID=Msa0391000-mRNA-1:three_prime_utr;Parent=Msa0391000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
