AlfalfaGEDB | Msa0391140

M. sativa cultivar zhongmu-4 / Msa0391140

KEGG: K07936
GO: GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000060 GO:0000070 GO:0000166 GO:0000226 GO:0000278 GO:0000280 GO:0000287 GO:0000819 GO:0001654 GO:0001673 GO:0001882 GO:0001883 GO:0002177 GO:0003006 GO:0003407 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003824 GO:0003924 GO:0005049 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005814 GO:0005815 GO:0005829 GO:0005856 GO:0005929 GO:0006139 GO:0006163 GO:0006259 GO:0006355 GO:0006403 GO:0006404 GO:0006405 GO:0006409 GO:0006606 GO:0006611 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0012505 GO:0014070 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016032 GO:0016043 GO:0016070 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0019058 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019904 GO:0019953 GO:0021537 GO:0021543 GO:0021761 GO:0021766 GO:0022402 GO:0022412 GO:0022414 GO:0022613 GO:0023052 GO:0030029 GO:0030036 GO:0030154 GO:0030496 GO:0030518 GO:0030521 GO:0030522 GO:0030900 GO:0031047 GO:0031074 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031503 GO:0031514 GO:0031960 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031982 GO:0032092 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032504 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0033365 GO:0033750 GO:0033993 GO:0034504 GO:0034613 GO:0034629 GO:0034641 GO:0034660 GO:0035068 GO:0035194 GO:0035195 GO:0035257 GO:0035258 GO:0035281 GO:0035639 GO:0036094 GO:0036126 GO:0040029 GO:0042221 GO:0042254 GO:0042272 GO:0042278 GO:0042565 GO:0042886 GO:0042995 GO:0043010 GO:0043073 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043393 GO:0043401 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044451 GO:0044464 GO:0044703 GO:0044766 GO:0044877 GO:0045184 GO:0045505 GO:0045540 GO:0045893 GO:0045935 GO:0046039 GO:0046128 GO:0046483 GO:0046794 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0046872 GO:0046890 GO:0046907 GO:0046982 GO:0046983 GO:0048232 GO:0048285 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048545 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050681 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051030 GO:0051031 GO:0051049 GO:0051050 GO:0051098 GO:0051099 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051385 GO:0051427 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051716 GO:0055037 GO:0055086 GO:0060041 GO:0060255 GO:0060322 GO:0060341 GO:0061015 GO:0061676 GO:0062012 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070727 GO:0070883 GO:0070887 GO:0071166 GO:0071310 GO:0071383 GO:0071384 GO:0071389 GO:0071396 GO:0071407 GO:0071426 GO:0071428 GO:0071431 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072521 GO:0072594 GO:0075733 GO:0080090 GO:0090087 GO:0090181 GO:0090304 GO:0090316 GO:0097064 GO:0097159 GO:0097223 GO:0097367 GO:0097708 GO:0097729 GO:0098813 GO:0106118 GO:0120025 GO:0140014 GO:0140104 GO:0140110 GO:0140142 GO:1901068 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901657 GO:1902570 GO:1902579 GO:1902680 GO:1902850 GO:1902930 GO:1903047 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:1990904 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391140	XP_039683469.1	83.212	137	21	1	86	220	102	238	8.76e-77	252

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391140	A0A6P4DTL4	52.518	139	63	1	86	221	1	139	2.18e-40	154

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0162580	Msa0391140	0.811205	7.866206e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391140	MtrunA17_Chr3g0078081	42.593	108	53	2	128	226	6	113	6.57e-19	80.9
Msa0391140	MtrunA17_Chr5g0408081	37.838	111	60	3	119	220	16	126	1.09e-14	72.8
Msa0391140	MtrunA17_Chr8g0350791	31.496	127	83	3	92	217	1	124	1.88e-14	68.2
Msa0391140	MtrunA17_Chr3g0093231	37.209	86	52	2	136	220	33	117	3.52e-14	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391140	AT4G09660.1	40.698	86	50	1	136	220	14	99	7.03e-15	73.6
Msa0391140	AT1G19260.1	40.698	86	50	1	136	220	14	99	9.81e-15	73.2

Find 30 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTTCAATTATTTCCTTCT+TGG	0.166760	3_2:-2487557	Msa0391140:CDS
ATTTCATCTCTTTGATTTAC+AGG	0.206661	3_2:+2487675	None:intergenic
TGACGAAGTCTTTGGCGTTT+TGG	0.279697	3_2:+2487762	None:intergenic
CAGGATTGCGACCGATGATT+TGG	0.304209	3_2:-2487704	Msa0391140:CDS
TTTCTTCATGACGAAGTCTT+TGG	0.326320	3_2:+2487754	None:intergenic
TTTGAGTTGGTGTGTTCTTT+CGG	0.329090	3_2:+2489127	None:intergenic
CAAATCATCGGTCGCAATCC+TGG	0.380667	3_2:+2487705	None:intergenic
GAAATGAATAAGAATTTAGT+AGG	0.384589	3_2:-2489211	Msa0391140:CDS
CTGAGATCGGATGCTTCAAT+TGG	0.416185	3_2:+2487816	None:intergenic
GGATGATCATCATTTGATAA+AGG	0.423666	3_2:+2487600	None:intergenic
CAGTGTTTCACCTCAAGAAC+AGG	0.438168	3_2:-2487796	Msa0391140:CDS
GCATTCTTGATTCTTTGAGT+TGG	0.439060	3_2:+2489114	None:intergenic
AAAGGATACGTTGTAAGAAT+AGG	0.443129	3_2:+2487618	None:intergenic
TCTCAAATTGAAGTAGATCC+AGG	0.457891	3_2:-2487723	Msa0391140:CDS
CGTCGTGCTTATCTTAAACA+TGG	0.472482	3_2:-2487651	Msa0391140:CDS
TATTAGCTTATTTGAACAAA+CGG	0.489563	3_2:+2489039	None:intergenic
TCAGATTGTTCCTGTTCTTG+AGG	0.496318	3_2:+2487786	None:intergenic
ACAGGAAAGTTCCAAATCAT+CGG	0.536510	3_2:+2487693	None:intergenic
TTGAGGTGAAACACTGAGAT+CGG	0.548649	3_2:+2487803	None:intergenic
CTGAGGTATATCTTAAACAT+GGG	0.554614	3_2:+2487496	None:intergenic
CAAATAAGCTAATAAACTTG+AGG	0.557131	3_2:-2489030	Msa0391140:CDS
GTCGTGCTTATCTTAAACAT+GGG	0.570642	3_2:-2487650	Msa0391140:CDS
GATACGTTGTAAGAATAGGT+TGG	0.576329	3_2:+2487622	None:intergenic
TGAGAATACTCTAACCAAGA+AGG	0.585472	3_2:+2487543	None:intergenic
ACTGAGGTATATCTTAAACA+TGG	0.591732	3_2:+2487495	None:intergenic
ACTTGAGGTTCAATGCTATG+TGG	0.595845	3_2:-2489015	Msa0391140:CDS
ATCGGATGCTTCAATTGGAG+AGG	0.598197	3_2:+2487821	None:intergenic
GTTGTAAGAATAGGTTGGCA+TGG	0.603127	3_2:+2487627	None:intergenic
CAAGAAGCTTGAAAACGACG+AGG	0.722297	3_2:+2487579	None:intergenic
GTTCAATGCTATGTGGAAAG+CGG	0.733073	3_2:-2489008	Msa0391140:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATGTAATGTTTTTAATAATT+GGG	+	chr3_2:2488271-2488290	None:intergenic	10.0%
!!!	TCAGAAAAATATTTTTTTTT+GGG	+	chr3_2:2488360-2488379	None:intergenic	10.0%
!!!	TTATTATTATTTATCTCTTT+TGG	+	chr3_2:2488539-2488558	None:intergenic	10.0%
!!!	TTTATTTGATCTATTATTTT+AGG	-	chr3_2:2488766-2488785	Msa0391140:intron	10.0%
!!!	ATGTAATGTTTTTAATAATT+GGG	+	chr3_2:2488271-2488290	None:intergenic	10.0%
!!!	TCAGAAAAATATTTTTTTTT+GGG	+	chr3_2:2488360-2488379	None:intergenic	10.0%
!!!	TTATTATTATTTATCTCTTT+TGG	+	chr3_2:2488539-2488558	None:intergenic	10.0%
!!!	TTTATTTGATCTATTATTTT+AGG	-	chr3_2:2488766-2488785	Msa0391140:intron	10.0%
!!!	AACTTTTTTTTCTTTCTAAA+TGG	+	chr3_2:2487776-2487795	None:intergenic	15.0%
!!!	AACACAAAATGATTTTTAAA+AGG	-	chr3_2:2487885-2487904	Msa0391140:CDS	15.0%
!!!	TTATTTTCTCTAAAAATCTA+AGG	+	chr3_2:2487976-2487995	None:intergenic	15.0%
!!!	AACTAACATTTTATTCATAA+GGG	+	chr3_2:2488185-2488204	None:intergenic	15.0%
!!!	TAACTAACATTTTATTCATA+AGG	+	chr3_2:2488186-2488205	None:intergenic	15.0%
!!	TATGAATAAAATGTTAGTTA+AGG	-	chr3_2:2488186-2488205	Msa0391140:intron	15.0%
!!!	GATGTAATGTTTTTAATAAT+TGG	+	chr3_2:2488272-2488291	None:intergenic	15.0%
!!!	CAGAAAAATATTTTTTTTTG+GGG	+	chr3_2:2488359-2488378	None:intergenic	15.0%
!!!	CTCAGAAAAATATTTTTTTT+TGG	+	chr3_2:2488361-2488380	None:intergenic	15.0%
!!!	TAAATAATTTGAAGTTCAAT+CGG	+	chr3_2:2488484-2488503	None:intergenic	15.0%
!!!	TAGGTATATTTTTTATACTT+AGG	-	chr3_2:2488645-2488664	Msa0391140:intron	15.0%
!!!	AACTTTTTTTTCTTTCTAAA+TGG	+	chr3_2:2487776-2487795	None:intergenic	15.0%
!!!	AACACAAAATGATTTTTAAA+AGG	-	chr3_2:2487885-2487904	Msa0391140:CDS	15.0%
!!!	TTATTTTCTCTAAAAATCTA+AGG	+	chr3_2:2487976-2487995	None:intergenic	15.0%
!!!	AACTAACATTTTATTCATAA+GGG	+	chr3_2:2488185-2488204	None:intergenic	15.0%
!!!	TAACTAACATTTTATTCATA+AGG	+	chr3_2:2488186-2488205	None:intergenic	15.0%
!!	TATGAATAAAATGTTAGTTA+AGG	-	chr3_2:2488186-2488205	Msa0391140:intron	15.0%
!!!	GATGTAATGTTTTTAATAAT+TGG	+	chr3_2:2488272-2488291	None:intergenic	15.0%
!!!	CAGAAAAATATTTTTTTTTG+GGG	+	chr3_2:2488359-2488378	None:intergenic	15.0%
!!!	CTCAGAAAAATATTTTTTTT+TGG	+	chr3_2:2488361-2488380	None:intergenic	15.0%
!!!	TAAATAATTTGAAGTTCAAT+CGG	+	chr3_2:2488484-2488503	None:intergenic	15.0%
!!!	TAGGTATATTTTTTATACTT+AGG	-	chr3_2:2488645-2488664	Msa0391140:intron	15.0%
!!!	TCTTCTTTTAATAGAGATAT+TGG	+	chr3_2:2487492-2487511	None:intergenic	20.0%
!!!	TATTAGCTTATTTGAACAAA+CGG	+	chr3_2:2487639-2487658	None:intergenic	20.0%
!!	TAGAAAGAAAAAAAAGTTCA+AGG	-	chr3_2:2487778-2487797	Msa0391140:CDS	20.0%
!!	AGAAAGAAAAAAAAGTTCAA+GGG	-	chr3_2:2487779-2487798	Msa0391140:CDS	20.0%
!!	AACATGAATTGGATAAAATA+AGG	-	chr3_2:2487826-2487845	Msa0391140:CDS	20.0%
!!	ACATGAATTGGATAAAATAA+GGG	-	chr3_2:2487827-2487846	Msa0391140:CDS	20.0%
!!!	AAATCATTTTGTGTTCTATT+AGG	+	chr3_2:2487880-2487899	None:intergenic	20.0%
!!	GTAGCTAAATATATTATTAG+GGG	+	chr3_2:2488412-2488431	None:intergenic	20.0%
!!	GGTAGCTAAATATATTATTA+GGG	+	chr3_2:2488413-2488432	None:intergenic	20.0%
!!	TTCACTTAAAATAAAACTTG+GGG	+	chr3_2:2488434-2488453	None:intergenic	20.0%
!!	GTTCACTTAAAATAAAACTT+GGG	+	chr3_2:2488435-2488454	None:intergenic	20.0%
!!	AGTTCACTTAAAATAAAACT+TGG	+	chr3_2:2488436-2488455	None:intergenic	20.0%
!!	ATTATTTAATTGTGTCGTAT+AGG	-	chr3_2:2488496-2488515	Msa0391140:intron	20.0%
!!	ACAGTAAAATAATACAAAAG+TGG	-	chr3_2:2488582-2488601	Msa0391140:intron	20.0%
!!	CAGTAAAATAATACAAAAGT+GGG	-	chr3_2:2488583-2488602	Msa0391140:intron	20.0%
!!!	ATACTGTATAATTTTACTTC+CGG	-	chr3_2:2488685-2488704	Msa0391140:intron	20.0%
!!	CAAAAAAAAAACATTAGTAC+CGG	+	chr3_2:2488707-2488726	None:intergenic	20.0%
!!!	TCTTCTTTTAATAGAGATAT+TGG	+	chr3_2:2487492-2487511	None:intergenic	20.0%
!!!	TATTAGCTTATTTGAACAAA+CGG	+	chr3_2:2487639-2487658	None:intergenic	20.0%
!!	TAGAAAGAAAAAAAAGTTCA+AGG	-	chr3_2:2487778-2487797	Msa0391140:CDS	20.0%
!!	AGAAAGAAAAAAAAGTTCAA+GGG	-	chr3_2:2487779-2487798	Msa0391140:CDS	20.0%
!!	AACATGAATTGGATAAAATA+AGG	-	chr3_2:2487826-2487845	Msa0391140:CDS	20.0%
!!	ACATGAATTGGATAAAATAA+GGG	-	chr3_2:2487827-2487846	Msa0391140:CDS	20.0%
!!!	AAATCATTTTGTGTTCTATT+AGG	+	chr3_2:2487880-2487899	None:intergenic	20.0%
!!	GTAGCTAAATATATTATTAG+GGG	+	chr3_2:2488412-2488431	None:intergenic	20.0%
!!	GGTAGCTAAATATATTATTA+GGG	+	chr3_2:2488413-2488432	None:intergenic	20.0%
!!	TTCACTTAAAATAAAACTTG+GGG	+	chr3_2:2488434-2488453	None:intergenic	20.0%
!!	GTTCACTTAAAATAAAACTT+GGG	+	chr3_2:2488435-2488454	None:intergenic	20.0%
!!	AGTTCACTTAAAATAAAACT+TGG	+	chr3_2:2488436-2488455	None:intergenic	20.0%
!!	ATTATTTAATTGTGTCGTAT+AGG	-	chr3_2:2488496-2488515	Msa0391140:intron	20.0%
!!	ACAGTAAAATAATACAAAAG+TGG	-	chr3_2:2488582-2488601	Msa0391140:intron	20.0%
!!	CAGTAAAATAATACAAAAGT+GGG	-	chr3_2:2488583-2488602	Msa0391140:intron	20.0%
!!!	ATACTGTATAATTTTACTTC+CGG	-	chr3_2:2488685-2488704	Msa0391140:intron	20.0%
!!	CAAAAAAAAAACATTAGTAC+CGG	+	chr3_2:2488707-2488726	None:intergenic	20.0%
!	CAAATAAGCTAATAAACTTG+AGG	-	chr3_2:2487645-2487664	Msa0391140:CDS	25.0%
!	AAATAAATTACAACAGCCAA+TGG	-	chr3_2:2487732-2487751	Msa0391140:CDS	25.0%
!	GATGTAATTTATTTGTCCAT+TGG	+	chr3_2:2487751-2487770	None:intergenic	25.0%
!!	ACATTTTATTCATAAGGGTT+AGG	+	chr3_2:2488180-2488199	None:intergenic	25.0%
!	ACATCATTTACAAATCTAAG+AGG	-	chr3_2:2488287-2488306	Msa0391140:intron	25.0%
!!	AAATATTTTTCTGAGTGAGT+AGG	-	chr3_2:2488366-2488385	Msa0391140:intron	25.0%
!	GGGTAGCTAAATATATTATT+AGG	+	chr3_2:2488414-2488433	None:intergenic	25.0%
!!	ATAAAGATTTTTCTAACCAC+TGG	+	chr3_2:2488626-2488645	None:intergenic	25.0%
!	GTGGTTAGAAAAATCTTTAT+AGG	-	chr3_2:2488626-2488645	Msa0391140:intron	25.0%
!!	ATTTCATCTCTTTGATTTAC+AGG	+	chr3_2:2489003-2489022	None:intergenic	25.0%
!!!	GTTATATTTTGAAAAGACTG+AGG	+	chr3_2:2489199-2489218	None:intergenic	25.0%
!	CAAATAAGCTAATAAACTTG+AGG	-	chr3_2:2487645-2487664	Msa0391140:CDS	25.0%
!	AAATAAATTACAACAGCCAA+TGG	-	chr3_2:2487732-2487751	Msa0391140:CDS	25.0%
!	GATGTAATTTATTTGTCCAT+TGG	+	chr3_2:2487751-2487770	None:intergenic	25.0%
!!	ACATTTTATTCATAAGGGTT+AGG	+	chr3_2:2488180-2488199	None:intergenic	25.0%
!	ACATCATTTACAAATCTAAG+AGG	-	chr3_2:2488287-2488306	Msa0391140:intron	25.0%
!!	AAATATTTTTCTGAGTGAGT+AGG	-	chr3_2:2488366-2488385	Msa0391140:intron	25.0%
!	GGGTAGCTAAATATATTATT+AGG	+	chr3_2:2488414-2488433	None:intergenic	25.0%
!!	ATAAAGATTTTTCTAACCAC+TGG	+	chr3_2:2488626-2488645	None:intergenic	25.0%
!	GTGGTTAGAAAAATCTTTAT+AGG	-	chr3_2:2488626-2488645	Msa0391140:intron	25.0%
!!	ATTTCATCTCTTTGATTTAC+AGG	+	chr3_2:2489003-2489022	None:intergenic	25.0%
!!!	GTTATATTTTGAAAAGACTG+AGG	+	chr3_2:2489199-2489218	None:intergenic	25.0%
	TGTCTCTAACTAACATGAAT+TGG	-	chr3_2:2487815-2487834	Msa0391140:CDS	30.0%
	TCTAAAAATCTAAGGACGAT+TGG	+	chr3_2:2487968-2487987	None:intergenic	30.0%
!	TTTGGATGTTGTTGTTGTAT+GGG	+	chr3_2:2488047-2488066	None:intergenic	30.0%
	ATCCACATAAAAGCTAAAAG+AGG	-	chr3_2:2488140-2488159	Msa0391140:intron	30.0%
	CACTTTCTTACAGATCTAAA+AGG	-	chr3_2:2488225-2488244	Msa0391140:intron	30.0%
!!!	ATTTTTTTTTGGGGTAGCAA+GGG	+	chr3_2:2488350-2488369	None:intergenic	30.0%
!!!	TATTTTTTTTTGGGGTAGCA+AGG	+	chr3_2:2488351-2488370	None:intergenic	30.0%
!	TCTTTTGGATGTTAATCTTC+CGG	+	chr3_2:2488524-2488543	None:intergenic	30.0%
	AAAGGATACGTTGTAAGAAT+AGG	+	chr3_2:2489060-2489079	None:intergenic	30.0%
	GGATGATCATCATTTGATAA+AGG	+	chr3_2:2489078-2489097	None:intergenic	30.0%
	GGTTTCAATTATTTCCTTCT+TGG	-	chr3_2:2489118-2489137	Msa0391140:CDS	30.0%
	CTGAGGTATATCTTAAACAT+GGG	+	chr3_2:2489182-2489201	None:intergenic	30.0%
	ACTGAGGTATATCTTAAACA+TGG	+	chr3_2:2489183-2489202	None:intergenic	30.0%
	TGTCTCTAACTAACATGAAT+TGG	-	chr3_2:2487815-2487834	Msa0391140:CDS	30.0%
	TCTAAAAATCTAAGGACGAT+TGG	+	chr3_2:2487968-2487987	None:intergenic	30.0%
!	TTTGGATGTTGTTGTTGTAT+GGG	+	chr3_2:2488047-2488066	None:intergenic	30.0%
	ATCCACATAAAAGCTAAAAG+AGG	-	chr3_2:2488140-2488159	Msa0391140:intron	30.0%
	CACTTTCTTACAGATCTAAA+AGG	-	chr3_2:2488225-2488244	Msa0391140:intron	30.0%
!!!	ATTTTTTTTTGGGGTAGCAA+GGG	+	chr3_2:2488350-2488369	None:intergenic	30.0%
!!!	TATTTTTTTTTGGGGTAGCA+AGG	+	chr3_2:2488351-2488370	None:intergenic	30.0%
!	TCTTTTGGATGTTAATCTTC+CGG	+	chr3_2:2488524-2488543	None:intergenic	30.0%
	AAAGGATACGTTGTAAGAAT+AGG	+	chr3_2:2489060-2489079	None:intergenic	30.0%
	GGATGATCATCATTTGATAA+AGG	+	chr3_2:2489078-2489097	None:intergenic	30.0%
	GGTTTCAATTATTTCCTTCT+TGG	-	chr3_2:2489118-2489137	Msa0391140:CDS	30.0%
	CTGAGGTATATCTTAAACAT+GGG	+	chr3_2:2489182-2489201	None:intergenic	30.0%
	ACTGAGGTATATCTTAAACA+TGG	+	chr3_2:2489183-2489202	None:intergenic	30.0%
!!	TTTGAGTTGGTGTGTTCTTT+CGG	+	chr3_2:2487551-2487570	None:intergenic	35.0%
	GCATTCTTGATTCTTTGAGT+TGG	+	chr3_2:2487564-2487583	None:intergenic	35.0%
	AAAATCTAAGGACGATTGGT+TGG	+	chr3_2:2487964-2487983	None:intergenic	35.0%
!	CTTTGGATGTTGTTGTTGTA+TGG	+	chr3_2:2488048-2488067	None:intergenic	35.0%
!!!	AGCCTCTTTTAGCTTTTATG+TGG	+	chr3_2:2488145-2488164	None:intergenic	35.0%
	TAATTGTGTCGTATAGGAAC+CGG	-	chr3_2:2488502-2488521	Msa0391140:intron	35.0%
!	AGATTTTTCTAACCACTGGT+GGG	+	chr3_2:2488622-2488641	None:intergenic	35.0%
!	AAGATTTTTCTAACCACTGG+TGG	+	chr3_2:2488623-2488642	None:intergenic	35.0%
	TTTCTTCATGACGAAGTCTT+TGG	+	chr3_2:2488924-2488943	None:intergenic	35.0%
	TCTCAAATTGAAGTAGATCC+AGG	-	chr3_2:2488952-2488971	Msa0391140:intron	35.0%
	ACAGGAAAGTTCCAAATCAT+CGG	+	chr3_2:2488985-2489004	None:intergenic	35.0%
	GTCGTGCTTATCTTAAACAT+GGG	-	chr3_2:2489025-2489044	Msa0391140:CDS	35.0%
	GATACGTTGTAAGAATAGGT+TGG	+	chr3_2:2489056-2489075	None:intergenic	35.0%
	TGAGAATACTCTAACCAAGA+AGG	+	chr3_2:2489135-2489154	None:intergenic	35.0%
!!	TTTGAGTTGGTGTGTTCTTT+CGG	+	chr3_2:2487551-2487570	None:intergenic	35.0%
	GCATTCTTGATTCTTTGAGT+TGG	+	chr3_2:2487564-2487583	None:intergenic	35.0%
	AAAATCTAAGGACGATTGGT+TGG	+	chr3_2:2487964-2487983	None:intergenic	35.0%
!	CTTTGGATGTTGTTGTTGTA+TGG	+	chr3_2:2488048-2488067	None:intergenic	35.0%
!!!	AGCCTCTTTTAGCTTTTATG+TGG	+	chr3_2:2488145-2488164	None:intergenic	35.0%
	TAATTGTGTCGTATAGGAAC+CGG	-	chr3_2:2488502-2488521	Msa0391140:intron	35.0%
!	AGATTTTTCTAACCACTGGT+GGG	+	chr3_2:2488622-2488641	None:intergenic	35.0%
!	AAGATTTTTCTAACCACTGG+TGG	+	chr3_2:2488623-2488642	None:intergenic	35.0%
	TTTCTTCATGACGAAGTCTT+TGG	+	chr3_2:2488924-2488943	None:intergenic	35.0%
	TCTCAAATTGAAGTAGATCC+AGG	-	chr3_2:2488952-2488971	Msa0391140:intron	35.0%
	ACAGGAAAGTTCCAAATCAT+CGG	+	chr3_2:2488985-2489004	None:intergenic	35.0%
	GTCGTGCTTATCTTAAACAT+GGG	-	chr3_2:2489025-2489044	Msa0391140:CDS	35.0%
	GATACGTTGTAAGAATAGGT+TGG	+	chr3_2:2489056-2489075	None:intergenic	35.0%
	TGAGAATACTCTAACCAAGA+AGG	+	chr3_2:2489135-2489154	None:intergenic	35.0%
	ACTTGAGGTTCAATGCTATG+TGG	-	chr3_2:2487660-2487679	Msa0391140:CDS	40.0%
	GTTCAATGCTATGTGGAAAG+CGG	-	chr3_2:2487667-2487686	Msa0391140:CDS	40.0%
	CGATACGAATCTCTCTTCTT+TGG	+	chr3_2:2488065-2488084	None:intergenic	40.0%
	ACAAATCTAAGAGGCTAAGC+AGG	-	chr3_2:2488296-2488315	Msa0391140:intron	40.0%
	CAAATCTAAGAGGCTAAGCA+GGG	-	chr3_2:2488297-2488316	Msa0391140:intron	40.0%
	AAATCTAAGAGGCTAAGCAG+GGG	-	chr3_2:2488298-2488317	Msa0391140:intron	40.0%
	TTGAGGTGAAACACTGAGAT+CGG	+	chr3_2:2488875-2488894	None:intergenic	40.0%
	TCAGATTGTTCCTGTTCTTG+AGG	+	chr3_2:2488892-2488911	None:intergenic	40.0%
	CGTCGTGCTTATCTTAAACA+TGG	-	chr3_2:2489024-2489043	Msa0391140:CDS	40.0%
!	GTTGTAAGAATAGGTTGGCA+TGG	+	chr3_2:2489051-2489070	None:intergenic	40.0%
	ACTTGAGGTTCAATGCTATG+TGG	-	chr3_2:2487660-2487679	Msa0391140:CDS	40.0%
	GTTCAATGCTATGTGGAAAG+CGG	-	chr3_2:2487667-2487686	Msa0391140:CDS	40.0%
	CGATACGAATCTCTCTTCTT+TGG	+	chr3_2:2488065-2488084	None:intergenic	40.0%
	ACAAATCTAAGAGGCTAAGC+AGG	-	chr3_2:2488296-2488315	Msa0391140:intron	40.0%
	CAAATCTAAGAGGCTAAGCA+GGG	-	chr3_2:2488297-2488316	Msa0391140:intron	40.0%
	AAATCTAAGAGGCTAAGCAG+GGG	-	chr3_2:2488298-2488317	Msa0391140:intron	40.0%
	TTGAGGTGAAACACTGAGAT+CGG	+	chr3_2:2488875-2488894	None:intergenic	40.0%
	TCAGATTGTTCCTGTTCTTG+AGG	+	chr3_2:2488892-2488911	None:intergenic	40.0%
	CGTCGTGCTTATCTTAAACA+TGG	-	chr3_2:2489024-2489043	Msa0391140:CDS	40.0%
!	GTTGTAAGAATAGGTTGGCA+TGG	+	chr3_2:2489051-2489070	None:intergenic	40.0%
	AGGGGCGAATGGTAGTATAA+GGG	-	chr3_2:2488316-2488335	Msa0391140:intron	45.0%
	GCGAATGGTAGTATAAGGGA+GGG	-	chr3_2:2488320-2488339	Msa0391140:intron	45.0%
	CGAATGGTAGTATAAGGGAG+GGG	-	chr3_2:2488321-2488340	Msa0391140:intron	45.0%
	TCTAACCACTGGTGGGATAT+GGG	+	chr3_2:2488615-2488634	None:intergenic	45.0%
	TTCTAACCACTGGTGGGATA+TGG	+	chr3_2:2488616-2488635	None:intergenic	45.0%
	ATCGGATGCTTCAATTGGAG+AGG	+	chr3_2:2488857-2488876	None:intergenic	45.0%
	CTGAGATCGGATGCTTCAAT+TGG	+	chr3_2:2488862-2488881	None:intergenic	45.0%
	CAGTGTTTCACCTCAAGAAC+AGG	-	chr3_2:2488879-2488898	Msa0391140:intron	45.0%
!	TGACGAAGTCTTTGGCGTTT+TGG	+	chr3_2:2488916-2488935	None:intergenic	45.0%
	CAAGAAGCTTGAAAACGACG+AGG	+	chr3_2:2489099-2489118	None:intergenic	45.0%
!!	CTCGTCGTTTTCAAGCTTCT+TGG	-	chr3_2:2489097-2489116	Msa0391140:CDS	45.0%
	AGGGGCGAATGGTAGTATAA+GGG	-	chr3_2:2488316-2488335	Msa0391140:intron	45.0%
	GCGAATGGTAGTATAAGGGA+GGG	-	chr3_2:2488320-2488339	Msa0391140:intron	45.0%
	CGAATGGTAGTATAAGGGAG+GGG	-	chr3_2:2488321-2488340	Msa0391140:intron	45.0%
	TCTAACCACTGGTGGGATAT+GGG	+	chr3_2:2488615-2488634	None:intergenic	45.0%
	TTCTAACCACTGGTGGGATA+TGG	+	chr3_2:2488616-2488635	None:intergenic	45.0%
	ATCGGATGCTTCAATTGGAG+AGG	+	chr3_2:2488857-2488876	None:intergenic	45.0%
	CTGAGATCGGATGCTTCAAT+TGG	+	chr3_2:2488862-2488881	None:intergenic	45.0%
	CAGTGTTTCACCTCAAGAAC+AGG	-	chr3_2:2488879-2488898	Msa0391140:intron	45.0%
!	TGACGAAGTCTTTGGCGTTT+TGG	+	chr3_2:2488916-2488935	None:intergenic	45.0%
	CAAGAAGCTTGAAAACGACG+AGG	+	chr3_2:2489099-2489118	None:intergenic	45.0%
!!	CTCGTCGTTTTCAAGCTTCT+TGG	-	chr3_2:2489097-2489116	Msa0391140:CDS	45.0%
!!	TCTTTCGGCGTTTTGAGCGT+TGG	+	chr3_2:2487536-2487555	None:intergenic	50.0%
	CAGGGGCGAATGGTAGTATA+AGG	-	chr3_2:2488315-2488334	Msa0391140:intron	50.0%
	GGCGAATGGTAGTATAAGGG+AGG	-	chr3_2:2488319-2488338	Msa0391140:intron	50.0%
	ACATACCCATATCCCACCAG+TGG	-	chr3_2:2488607-2488626	Msa0391140:intron	50.0%
	CAAATCATCGGTCGCAATCC+TGG	+	chr3_2:2488973-2488992	None:intergenic	50.0%
	CAGGATTGCGACCGATGATT+TGG	-	chr3_2:2488971-2488990	Msa0391140:intron	50.0%
!!	TCTTTCGGCGTTTTGAGCGT+TGG	+	chr3_2:2487536-2487555	None:intergenic	50.0%
	CAGGGGCGAATGGTAGTATA+AGG	-	chr3_2:2488315-2488334	Msa0391140:intron	50.0%
	GGCGAATGGTAGTATAAGGG+AGG	-	chr3_2:2488319-2488338	Msa0391140:intron	50.0%
	ACATACCCATATCCCACCAG+TGG	-	chr3_2:2488607-2488626	Msa0391140:intron	50.0%
	CAAATCATCGGTCGCAATCC+TGG	+	chr3_2:2488973-2488992	None:intergenic	50.0%
	CAGGATTGCGACCGATGATT+TGG	-	chr3_2:2488971-2488990	Msa0391140:intron	50.0%
	AGAGGCTAAGCAGGGGCGAA+TGG	-	chr3_2:2488305-2488324	Msa0391140:intron	60.0%
	AGAGGCTAAGCAGGGGCGAA+TGG	-	chr3_2:2488305-2488324	Msa0391140:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	2487467	2489230	2487467	ID=Msa0391140;Name=Msa0391140
chr3_2	mRNA	2487467	2489230	2487467	ID=Msa0391140-mRNA-1;Parent=Msa0391140;Name=Msa0391140-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|231
chr3_2	exon	2488978	2489230	2488978	ID=Msa0391140-mRNA-1:exon:772;Parent=Msa0391140-mRNA-1
chr3_2	exon	2487467	2487909	2487467	ID=Msa0391140-mRNA-1:exon:771;Parent=Msa0391140-mRNA-1
chr3_2	CDS	2488978	2489230	2488978	ID=Msa0391140-mRNA-1:cds;Parent=Msa0391140-mRNA-1
chr3_2	CDS	2487467	2487909	2487467	ID=Msa0391140-mRNA-1:cds;Parent=Msa0391140-mRNA-1

Gene Sequence

>Msa0391140

ATGAATAAGAATTTAGTAGGAACCAATATCTCTATTAAAAGAAGAAGTGAAGAAGAAATACATGCACCAACGCTCAAAACGCCGAAAGAACACACCAACTCAAAGAATCAAGAATGCAAAATTGACAAAAATGCTGCAAACATAGAACATGTCGATAACAGAGCTGATACCGTTTGTTCAAATAAGCTAATAAACTTGAGGTTCAATGCTATGTGGAAAGCGGTGCTGCTACTTGAGAGTACTTTGTTCAAGAGTATGAGTAAAATGAAAACTATTGACAACTTTTTTAAAAGAATTGATACAAATGCTGCAAGCAGTTCCTCTCCAATTGAAGCATCCGATCTCAGTGTTTCACCTCAAGAACAGGAACAATCTGAGCCAAAACGCCAAAGACTTCGTCATGAAGAAATAAGTCGTTCTCAAATTGAAGTAGATCCAGGATTGCGACCGATGATTTGGAACTTTCCTGTAAATCAAAGAGATGAAATTCGTCGTGCTTATCTTAAACATGGGCCATGCCAACCTATTCTTACAACGTATCCTTTATCAAATGATGATCATCCTCGTCGTTTTCAAGCTTCTTGGTTTCAATTATTTCCTTCTTGGTTAGAGTATTCTCATGAAAAAGATGTTGTCTTTTGTTTCCCATGTTTAAGATATACCTCAGTCTTTTCAAAATATAACAACACTCTCTGA

Protein sequence

>Msa0391140

MNKNLVGTNISIKRRSEEEIHAPTLKTPKEHTNSKNQECKIDKNAANIEHVDNRADTVCSNKLINLRFNAMWKAVLLLESTLFKSMSKMKTIDNFFKRIDTNAASSSSPIEASDLSVSPQEQEQSEPKRQRLRHEEISRSQIEVDPGLRPMIWNFPVNQRDEIRRAYLKHGPCQPILTTYPLSNDDHPRRFQASWFQLFPSWLEYSHEKDVVFCFPCLRYTSVFSKYNNTL*