Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162580 | A0A072UY95 | 77.193 | 228 | 39 | 3 | 1 | 227 | 4 | 219 | 1.22e-115 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0162580 | 0.888222 | 7.149448e-73 | -8.615850e-47 |
| Msa0068630 | Msa0162580 | 0.876669 | 1.161910e-68 | -8.615850e-47 |
| Msa0071340 | Msa0162580 | 0.922742 | 6.619315e-89 | -8.615850e-47 |
| Msa0153200 | Msa0162580 | 0.881612 | 2.077266e-70 | -8.615850e-47 |
| Msa0162520 | Msa0162580 | 0.829549 | 4.838173e-55 | -8.615850e-47 |
| Msa0162580 | Msa0211680 | 0.819800 | 9.601894e-53 | -8.615850e-47 |
| Msa0162580 | Msa0280450 | 0.820940 | 5.259510e-53 | -8.615850e-47 |
| Msa0162580 | Msa0291600 | 0.835231 | 1.893120e-56 | -8.615850e-47 |
| Msa0162580 | Msa0373890 | 0.812380 | 4.364035e-51 | -8.615850e-47 |
| Msa0162580 | Msa0391140 | 0.811205 | 7.866206e-51 | -8.615850e-47 |
| Msa0162580 | Msa0458420 | 0.847835 | 8.993379e-60 | -8.615850e-47 |
| Msa0162580 | Msa0465170 | 0.805318 | 1.414185e-49 | -8.615850e-47 |
| Msa0162580 | Msa0548060 | 0.814246 | 1.698975e-51 | -8.615850e-47 |
| Msa0162580 | Msa0675510 | 0.924667 | 5.188710e-90 | -8.615850e-47 |
| Msa0162580 | Msa0902020 | 0.819208 | 1.310063e-52 | -8.615850e-47 |
| Msa0162580 | Msa0951330 | 0.802779 | 4.770719e-49 | -8.615850e-47 |
| Msa0162580 | Msa0962360 | 0.803563 | 3.283834e-49 | -8.615850e-47 |
| Msa0162580 | Msa1048540 | 0.837186 | 6.030604e-57 | -8.615850e-47 |
| Msa0162580 | Msa1182730 | 0.814261 | 1.685556e-51 | -8.615850e-47 |
| Msa0162580 | Msa1347360 | 0.815508 | 8.919869e-52 | -8.615850e-47 |
| Msa0162580 | Msa1463140 | 0.880967 | 3.547474e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATAGATCGTCAATATT+AGG | 0.196396 | 1_4:-39693483 | None:intergenic |
| TGCAAACTTAGGAGCCAATT+TGG | 0.218033 | 1_4:+39691979 | Msa0162580:CDS |
| AAATCCAAGTGAAGAAATTA+AGG | 0.250461 | 1_4:+39693013 | Msa0162580:CDS |
| GTCACTATTAAGACCCAAAT+TGG | 0.259503 | 1_4:-39691993 | None:intergenic |
| TGAGTCCGAGTCTCGATTAA+AGG | 0.273789 | 1_4:-39692517 | None:intergenic |
| TCCTCTTAGGACCCTTGTTT+TGG | 0.280514 | 1_4:-39692015 | None:intergenic |
| GAACTAGCACAGCTGATTAA+TGG | 0.293544 | 1_4:+39693063 | Msa0162580:CDS |
| TATTTCAGTCTGATCCTCTT+AGG | 0.304174 | 1_4:-39692028 | None:intergenic |
| CTCCAACATGTGGTTCAGTT+TGG | 0.312413 | 1_4:+39691933 | Msa0162580:CDS |
| CCAACATCAAACGGTGCTTT+TGG | 0.325999 | 1_4:-39692772 | None:intergenic |
| GTTTGCAGTAGAGTGGTTAA+AGG | 0.332534 | 1_4:-39691963 | None:intergenic |
| TCCAACATGTGGTTCAGTTT+GGG | 0.349563 | 1_4:+39691934 | Msa0162580:CDS |
| TTGTTCTTACCTTGATCATA+TGG | 0.360817 | 1_4:-39693144 | None:intergenic |
| AGAACACAACAACATGGAAT+TGG | 0.366539 | 1_4:+39693437 | Msa0162580:CDS |
| ACATAGGTGGCGTCCACATT+TGG | 0.369942 | 1_4:-39693398 | None:intergenic |
| ATAATTTGAGTCTAAATCAT+TGG | 0.376358 | 1_4:-39693112 | None:intergenic |
| GAAATAGATCGTCAATATTA+GGG | 0.384297 | 1_4:-39693482 | None:intergenic |
| GATACAAAGGTGGTTCTGTT+TGG | 0.388046 | 1_4:-39691910 | None:intergenic |
| AACTAGCACAGCTGATTAAT+GGG | 0.393662 | 1_4:+39693064 | Msa0162580:CDS |
| GCAAACTTAGGAGCCAATTT+GGG | 0.421774 | 1_4:+39691980 | Msa0162580:CDS |
| GAACACAACAACATGGAATT+GGG | 0.459020 | 1_4:+39693438 | Msa0162580:CDS |
| GTTCCCTTAATTTCTTCACT+TGG | 0.466132 | 1_4:-39693017 | None:intergenic |
| GGAATTGGGCATGGAATGGA+TGG | 0.466811 | 1_4:+39693452 | Msa0162580:CDS |
| GTTTCAAAACCATATGATCA+AGG | 0.472120 | 1_4:+39693135 | Msa0162580:CDS |
| CCAAAAGCACCGTTTGATGT+TGG | 0.496047 | 1_4:+39692772 | Msa0162580:CDS |
| AATCCAAGTGAAGAAATTAA+GGG | 0.496720 | 1_4:+39693014 | Msa0162580:CDS |
| GTTGGAGCGTGTGACGTTGA+TGG | 0.506274 | 1_4:+39692790 | Msa0162580:CDS |
| AACCACTCTACTGCAAACTT+AGG | 0.532758 | 1_4:+39691968 | Msa0162580:CDS |
| CTCCTAAGTTTGCAGTAGAG+TGG | 0.536634 | 1_4:-39691970 | None:intergenic |
| GTTTCATGCTCATCCGACAT+AGG | 0.537114 | 1_4:-39693414 | None:intergenic |
| AATGTGGACGCCACCTATGT+CGG | 0.552697 | 1_4:+39693401 | Msa0162580:CDS |
| AAAGGTGGTTCTGTTTGGAA+AGG | 0.562830 | 1_4:-39691905 | None:intergenic |
| TCACACGCTCCAACATCAAA+CGG | 0.566826 | 1_4:-39692781 | None:intergenic |
| ACATGGAATTGGGCATGGAA+TGG | 0.568585 | 1_4:+39693448 | Msa0162580:CDS |
| TCTTAATAGTGACCAAAACA+AGG | 0.569518 | 1_4:+39692003 | Msa0162580:CDS |
| GAGTCTAAATCATTGGACAT+TGG | 0.575430 | 1_4:-39693105 | None:intergenic |
| GATCAAGACGGAAGGAAGAT+CGG | 0.579150 | 1_4:+39692547 | Msa0162580:CDS |
| GACTATTACAAAGCCAAATG+TGG | 0.588677 | 1_4:+39693385 | Msa0162580:CDS |
| CAACAACATGGAATTGGGCA+TGG | 0.590352 | 1_4:+39693443 | Msa0162580:CDS |
| ACCAAAACAAGGGTCCTAAG+AGG | 0.590710 | 1_4:+39692014 | Msa0162580:CDS |
| GTTCTGTTTGGAAAGGAACA+TGG | 0.591842 | 1_4:-39691898 | None:intergenic |
| TCCCAAACTGAACCACATGT+TGG | 0.599459 | 1_4:-39691935 | None:intergenic |
| CAAACTGAACCACATGTTGG+AGG | 0.601431 | 1_4:-39691932 | None:intergenic |
| CACTTAGAGAACATAATGGA+GGG | 0.621926 | 1_4:+39691866 | None:intergenic |
| CCACATGTTGGAGGATACAA+AGG | 0.621996 | 1_4:-39691923 | None:intergenic |
| TCATGCTCATCCGACATAGG+TGG | 0.624811 | 1_4:-39693411 | None:intergenic |
| AGCTCATAGATCAAGACGGA+AGG | 0.626708 | 1_4:+39692539 | Msa0162580:CDS |
| AAAGAAGCACATCTTAAAGA+CGG | 0.628544 | 1_4:+39692833 | Msa0162580:CDS |
| CTACGTCGATCAACAAGCTG+AGG | 0.639200 | 1_4:+39693041 | Msa0162580:CDS |
| CCTTTGTATCCTCCAACATG+TGG | 0.647083 | 1_4:+39691923 | Msa0162580:CDS |
| TGAAACCTTTAATCGAGACT+CGG | 0.649080 | 1_4:+39692512 | Msa0162580:CDS |
| TGAAACAGAACACAACAACA+TGG | 0.650313 | 1_4:+39693431 | Msa0162580:CDS |
| ACTCAGCTCATAGATCAAGA+CGG | 0.691685 | 1_4:+39692535 | Msa0162580:CDS |
| CTTAATAGTGACCAAAACAA+GGG | 0.698882 | 1_4:+39692004 | Msa0162580:CDS |
| CATGTTGGAGGATACAAAGG+TGG | 0.702436 | 1_4:-39691920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTCAAAAAAAAAAAAAAAT+TGG | + | chr1_4:39692142-39692161 | Msa0162580:intron | 10.0% |
| !! | CTCAAAAAAAAAAAAAAATT+GGG | + | chr1_4:39692143-39692162 | Msa0162580:intron | 10.0% |
| !! | TCAAAAAAAAAAAAAAATTG+GGG | + | chr1_4:39692144-39692163 | Msa0162580:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr1_4:39693254-39693273 | Msa0162580:intron | 10.0% |
| !! | TCTCAAAAAAAAAAAAAAAT+TGG | + | chr1_4:39692142-39692161 | Msa0162580:intron | 10.0% |
| !! | CTCAAAAAAAAAAAAAAATT+GGG | + | chr1_4:39692143-39692162 | Msa0162580:intron | 10.0% |
| !! | TCAAAAAAAAAAAAAAATTG+GGG | + | chr1_4:39692144-39692163 | Msa0162580:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr1_4:39693254-39693273 | Msa0162580:intron | 10.0% |
| !!! | ATTGACATTTTAAATAATTG+TGG | + | chr1_4:39692111-39692130 | Msa0162580:intron | 15.0% |
| !! | ACACACAAATATATATATTA+AGG | + | chr1_4:39692173-39692192 | Msa0162580:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_4:39692580-39692599 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_4:39692587-39692606 | Msa0162580:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr1_4:39693248-39693267 | Msa0162580:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_4:39693363-39693382 | Msa0162580:intron | 15.0% |
| !!! | ATTGACATTTTAAATAATTG+TGG | + | chr1_4:39692111-39692130 | Msa0162580:intron | 15.0% |
| !! | ACACACAAATATATATATTA+AGG | + | chr1_4:39692173-39692192 | Msa0162580:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_4:39692580-39692599 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_4:39692587-39692606 | Msa0162580:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr1_4:39693248-39693267 | Msa0162580:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_4:39693363-39693382 | Msa0162580:intron | 15.0% |
| !! | TTAAAATGTCAATTATCACA+AGG | - | chr1_4:39692104-39692123 | None:intergenic | 20.0% |
| !! | TCATCATAATCTAAATTTCA+AGG | - | chr1_4:39692412-39692431 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_4:39693115-39693134 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr1_4:39693214-39693233 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_4:39693288-39693307 | None:intergenic | 20.0% |
| !! | TTAAAATGTCAATTATCACA+AGG | - | chr1_4:39692104-39692123 | None:intergenic | 20.0% |
| !! | TCATCATAATCTAAATTTCA+AGG | - | chr1_4:39692412-39692431 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_4:39693115-39693134 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr1_4:39693214-39693233 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_4:39693288-39693307 | None:intergenic | 20.0% |
| ! | AGACTGAAATACATGTAATT+TGG | + | chr1_4:39692040-39692059 | Msa0162580:intron | 25.0% |
| ! | CATAGCTCAATATATTGATA+AGG | + | chr1_4:39692917-39692936 | Msa0162580:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_4:39692983-39693002 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_4:39693013-39693032 | Msa0162580:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_4:39693014-39693033 | Msa0162580:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_4:39693485-39693504 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_4:39693486-39693505 | None:intergenic | 25.0% |
| ! | AGACTGAAATACATGTAATT+TGG | + | chr1_4:39692040-39692059 | Msa0162580:intron | 25.0% |
| ! | CATAGCTCAATATATTGATA+AGG | + | chr1_4:39692917-39692936 | Msa0162580:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_4:39692983-39693002 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_4:39693013-39693032 | Msa0162580:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_4:39693014-39693033 | Msa0162580:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_4:39693485-39693504 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_4:39693486-39693505 | None:intergenic | 25.0% |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_4:39692003-39692022 | Msa0162580:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_4:39692004-39692023 | Msa0162580:CDS | 30.0% | |
| ! | AAAGAAGCACATCTTAAAGA+CGG | + | chr1_4:39692833-39692852 | Msa0162580:CDS | 30.0% |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_4:39692984-39693003 | None:intergenic | 30.0% | |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_4:39693135-39693154 | Msa0162580:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_4:39693147-39693166 | None:intergenic | 30.0% | |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_4:39692003-39692022 | Msa0162580:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_4:39692004-39692023 | Msa0162580:CDS | 30.0% | |
| ! | AAAGAAGCACATCTTAAAGA+CGG | + | chr1_4:39692833-39692852 | Msa0162580:CDS | 30.0% |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_4:39692984-39693003 | None:intergenic | 30.0% | |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_4:39693135-39693154 | Msa0162580:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_4:39693147-39693166 | None:intergenic | 30.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr1_4:39691996-39692015 | None:intergenic | 35.0% | |
| TATTTCAGTCTGATCCTCTT+AGG | - | chr1_4:39692031-39692050 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_4:39692512-39692531 | Msa0162580:CDS | 35.0% | |
| CGCTCATCATAAATATATGC+AGG | + | chr1_4:39692706-39692725 | Msa0162580:intron | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_4:39693020-39693039 | None:intergenic | 35.0% | |
| AACTAGCACAGCTGATTAAT+GGG | + | chr1_4:39693064-39693083 | Msa0162580:CDS | 35.0% | |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_4:39693108-39693127 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_4:39693385-39693404 | Msa0162580:CDS | 35.0% | |
| TGAAACAGAACACAACAACA+TGG | + | chr1_4:39693431-39693450 | Msa0162580:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_4:39693437-39693456 | Msa0162580:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_4:39693438-39693457 | Msa0162580:CDS | 35.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr1_4:39691996-39692015 | None:intergenic | 35.0% | |
| TATTTCAGTCTGATCCTCTT+AGG | - | chr1_4:39692031-39692050 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_4:39692512-39692531 | Msa0162580:CDS | 35.0% | |
| CGCTCATCATAAATATATGC+AGG | + | chr1_4:39692706-39692725 | Msa0162580:intron | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_4:39693020-39693039 | None:intergenic | 35.0% | |
| AACTAGCACAGCTGATTAAT+GGG | + | chr1_4:39693064-39693083 | Msa0162580:CDS | 35.0% | |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_4:39693108-39693127 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_4:39693385-39693404 | Msa0162580:CDS | 35.0% | |
| TGAAACAGAACACAACAACA+TGG | + | chr1_4:39693431-39693450 | Msa0162580:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_4:39693437-39693456 | Msa0162580:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_4:39693438-39693457 | Msa0162580:CDS | 35.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_4:39691901-39691920 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_4:39691908-39691927 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_4:39691913-39691932 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_4:39691934-39691953 | Msa0162580:CDS | 40.0% | |
| GTTTGCAGTAGAGTGGTTAA+AGG | - | chr1_4:39691966-39691985 | None:intergenic | 40.0% | |
| AACCACTCTACTGCAAACTT+AGG | + | chr1_4:39691968-39691987 | Msa0162580:CDS | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr1_4:39691979-39691998 | Msa0162580:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr1_4:39691980-39691999 | Msa0162580:CDS | 40.0% | |
| CATGCATTCACCATAGTCAA+TGG | + | chr1_4:39692317-39692336 | Msa0162580:intron | 40.0% | |
| ACACATGCATTATGAGACTC+TGG | - | chr1_4:39692452-39692471 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_4:39692535-39692554 | Msa0162580:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr1_4:39693063-39693082 | Msa0162580:CDS | 40.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_4:39691901-39691920 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_4:39691908-39691927 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_4:39691913-39691932 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_4:39691934-39691953 | Msa0162580:CDS | 40.0% | |
| GTTTGCAGTAGAGTGGTTAA+AGG | - | chr1_4:39691966-39691985 | None:intergenic | 40.0% | |
| AACCACTCTACTGCAAACTT+AGG | + | chr1_4:39691968-39691987 | Msa0162580:CDS | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr1_4:39691979-39691998 | Msa0162580:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr1_4:39691980-39691999 | Msa0162580:CDS | 40.0% | |
| CATGCATTCACCATAGTCAA+TGG | + | chr1_4:39692317-39692336 | Msa0162580:intron | 40.0% | |
| ACACATGCATTATGAGACTC+TGG | - | chr1_4:39692452-39692471 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_4:39692535-39692554 | Msa0162580:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr1_4:39693063-39693082 | Msa0162580:CDS | 40.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_4:39691923-39691942 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_4:39691926-39691945 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_4:39691923-39691942 | Msa0162580:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_4:39691935-39691954 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_4:39691933-39691952 | Msa0162580:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_4:39691938-39691957 | None:intergenic | 45.0% | |
| CTCCTAAGTTTGCAGTAGAG+TGG | - | chr1_4:39691973-39691992 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_4:39692014-39692033 | Msa0162580:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_4:39692018-39692037 | None:intergenic | 45.0% |
| ! | CGATCTACGACCATTGACTA+TGG | - | chr1_4:39692330-39692349 | None:intergenic | 45.0% |
| GGTCGTAGATCGACATCAAA+CGG | + | chr1_4:39692338-39692357 | Msa0162580:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_4:39692520-39692539 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_4:39692539-39692558 | Msa0162580:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_4:39692547-39692566 | Msa0162580:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_4:39692775-39692794 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_4:39692772-39692791 | Msa0162580:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_4:39692784-39692803 | None:intergenic | 45.0% | |
| GTTTCATGCTCATCCGACAT+AGG | - | chr1_4:39693417-39693436 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_4:39693443-39693462 | Msa0162580:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_4:39693448-39693467 | Msa0162580:CDS | 45.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_4:39691923-39691942 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_4:39691926-39691945 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_4:39691923-39691942 | Msa0162580:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_4:39691935-39691954 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_4:39691933-39691952 | Msa0162580:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_4:39691938-39691957 | None:intergenic | 45.0% | |
| CTCCTAAGTTTGCAGTAGAG+TGG | - | chr1_4:39691973-39691992 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_4:39692014-39692033 | Msa0162580:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_4:39692018-39692037 | None:intergenic | 45.0% |
| ! | CGATCTACGACCATTGACTA+TGG | - | chr1_4:39692330-39692349 | None:intergenic | 45.0% |
| GGTCGTAGATCGACATCAAA+CGG | + | chr1_4:39692338-39692357 | Msa0162580:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_4:39692520-39692539 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_4:39692539-39692558 | Msa0162580:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_4:39692547-39692566 | Msa0162580:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_4:39692775-39692794 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_4:39692772-39692791 | Msa0162580:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_4:39692784-39692803 | None:intergenic | 45.0% | |
| GTTTCATGCTCATCCGACAT+AGG | - | chr1_4:39693417-39693436 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_4:39693443-39693462 | Msa0162580:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_4:39693448-39693467 | Msa0162580:CDS | 45.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_4:39693041-39693060 | Msa0162580:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr1_4:39693401-39693420 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr1_4:39693401-39693420 | Msa0162580:CDS | 50.0% | |
| TCATGCTCATCCGACATAGG+TGG | - | chr1_4:39693414-39693433 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_4:39693452-39693471 | Msa0162580:CDS | 50.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_4:39693041-39693060 | Msa0162580:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr1_4:39693401-39693420 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr1_4:39693401-39693420 | Msa0162580:CDS | 50.0% | |
| TCATGCTCATCCGACATAGG+TGG | - | chr1_4:39693414-39693433 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_4:39693452-39693471 | Msa0162580:CDS | 50.0% | |
| GTTGGAGCGTGTGACGTTGA+TGG | + | chr1_4:39692790-39692809 | Msa0162580:CDS | 55.0% | |
| GTTGGAGCGTGTGACGTTGA+TGG | + | chr1_4:39692790-39692809 | Msa0162580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39691881 | 39693509 | 39691881 | ID=Msa0162580;Name=Msa0162580 |
| chr1_4 | mRNA | 39691881 | 39693509 | 39691881 | ID=Msa0162580-mRNA-1;Parent=Msa0162580;Name=Msa0162580-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|227 |
| chr1_4 | exon | 39691881 | 39692053 | 39691881 | ID=Msa0162580-mRNA-1:exon:11494;Parent=Msa0162580-mRNA-1 |
| chr1_4 | exon | 39692512 | 39692608 | 39692512 | ID=Msa0162580-mRNA-1:exon:11495;Parent=Msa0162580-mRNA-1 |
| chr1_4 | exon | 39692728 | 39692854 | 39692728 | ID=Msa0162580-mRNA-1:exon:11496;Parent=Msa0162580-mRNA-1 |
| chr1_4 | exon | 39692995 | 39693156 | 39692995 | ID=Msa0162580-mRNA-1:exon:11497;Parent=Msa0162580-mRNA-1 |
| chr1_4 | exon | 39693385 | 39693509 | 39693385 | ID=Msa0162580-mRNA-1:exon:11498;Parent=Msa0162580-mRNA-1 |
| chr1_4 | CDS | 39691881 | 39692053 | 39691881 | ID=Msa0162580-mRNA-1:cds;Parent=Msa0162580-mRNA-1 |
| chr1_4 | CDS | 39692512 | 39692608 | 39692512 | ID=Msa0162580-mRNA-1:cds;Parent=Msa0162580-mRNA-1 |
| chr1_4 | CDS | 39692728 | 39692854 | 39692728 | ID=Msa0162580-mRNA-1:cds;Parent=Msa0162580-mRNA-1 |
| chr1_4 | CDS | 39692995 | 39693156 | 39692995 | ID=Msa0162580-mRNA-1:cds;Parent=Msa0162580-mRNA-1 |
| chr1_4 | CDS | 39693385 | 39693509 | 39693385 | ID=Msa0162580-mRNA-1:cds;Parent=Msa0162580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
