AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0391680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0391680 MtrunA17_Chr3g0080941 96.540 289 10 0 13 301 1325 1613 0.0 581
Msa0391680 MtrunA17_Chr3g0080981 92.727 220 16 0 13 232 1324 1543 8.86e-130 403
Msa0391680 MtrunA17_Chr2g0285731 66.436 289 95 2 13 301 1327 1613 3.61e-107 341
Msa0391680 MtrunA17_Chr7g0262191 56.250 144 63 0 13 156 1374 1517 7.74e-48 171
Msa0391680 MtrunA17_Chr6g0472531 51.724 145 70 0 13 157 1269 1413 2.28e-47 170
Msa0391680 MtrunA17_Chr6g0463201 50.345 145 71 1 13 157 1324 1467 2.48e-47 170
Msa0391680 MtrunA17_Chr6g0463121 51.724 145 70 0 13 157 1318 1462 2.65e-47 170
Msa0391680 MtrunA17_Chr6g0463121 29.801 151 104 2 9 158 694 843 5.05e-12 66.6
Msa0391680 MtrunA17_Chr6g0463141 50.345 145 72 0 13 157 1343 1487 1.83e-46 167
Msa0391680 MtrunA17_Chr5g0412941 51.389 144 70 0 13 156 175 318 2.80e-46 159
Msa0391680 MtrunA17_Chr6g0463131 50.345 145 72 0 13 157 1319 1463 3.05e-46 167
Msa0391680 MtrunA17_Chr1g0202221 51.034 145 71 0 13 157 1225 1369 3.35e-46 166
Msa0391680 MtrunA17_Chr6g0463391 50.345 145 71 1 13 157 504 647 3.89e-46 164
Msa0391680 MtrunA17_Chr8g0359291 50.345 145 72 0 13 157 500 644 5.05e-46 164
Msa0391680 MtrunA17_Chr1g0183191 52.941 153 67 1 13 160 1374 1526 9.99e-46 165
Msa0391680 MtrunA17_Chr6g0463151 49.655 145 73 0 13 157 1136 1280 1.84e-45 164
Msa0391680 MtrunA17_Chr6g0471281 50.694 144 71 0 13 156 1319 1462 3.13e-45 164
Msa0391680 MtrunA17_Chr8g0376961 52.083 144 69 0 13 156 1288 1431 3.89e-45 163
Msa0391680 MtrunA17_Chr3g0085281 50.694 144 71 0 13 156 1311 1454 9.51e-45 162
Msa0391680 MtrunA17_Chr6g0463211 48.966 145 73 1 13 157 1390 1533 1.07e-44 162
Msa0391680 MtrunA17_Chr6g0463181 50.345 145 72 0 13 157 1302 1446 2.29e-44 161
Msa0391680 MtrunA17_Chr6g0484351 47.799 159 75 2 11 169 500 650 5.64e-44 159
Msa0391680 MtrunA17_Chr5g0445741 51.389 144 70 0 13 156 1341 1484 1.30e-43 159
Msa0391680 MtrunA17_Chr8g0337121 49.351 154 76 1 4 157 1342 1493 2.41e-43 158
Msa0391680 MtrunA17_Chr3g0101481 52.083 144 69 0 13 156 1345 1488 3.82e-43 158
Msa0391680 MtrunA17_Chr5g0445701 47.333 150 73 1 13 156 86 235 4.79e-43 148
Msa0391680 MtrunA17_Chr8g0337191 48.701 154 77 1 4 157 1322 1473 6.33e-43 157
Msa0391680 MtrunA17_Chr3g0101441 49.306 144 73 0 13 156 1152 1295 8.30e-43 157
Msa0391680 MtrunA17_Chr5g0445671 50.350 143 71 0 13 155 950 1092 1.47e-42 156
Msa0391680 MtrunA17_Chr8g0341851 48.630 146 75 0 11 156 1308 1453 2.48e-42 155
Msa0391680 MtrunA17_Chr2g0295921 52.985 134 63 0 13 146 1363 1496 2.96e-42 155
Msa0391680 MtrunA17_Chr3g0101461 48.611 144 74 0 13 156 1152 1295 3.39e-42 155
Msa0391680 MtrunA17_Chr5g0412721 50.000 144 72 0 13 156 1336 1479 4.54e-42 154
Msa0391680 MtrunA17_Chr8g0341751 45.912 159 78 2 11 169 1132 1282 4.97e-41 152
Msa0391680 MtrunA17_Chr8g0341811 46.575 146 77 1 11 156 1120 1264 8.39e-41 151
Msa0391680 MtrunA17_Chr3g0101471 47.222 144 76 0 13 156 1150 1293 9.36e-41 150
Msa0391680 MtrunA17_Chr8g0353541 45.912 159 78 2 11 169 916 1066 1.36e-40 150
Msa0391680 MtrunA17_Chr8g0363771 50.000 134 67 0 13 146 1348 1481 1.52e-40 150
Msa0391680 MtrunA17_Chr8g0353781 46.575 146 77 1 11 156 1299 1443 1.78e-40 150
Msa0391680 MtrunA17_Chr8g0341761 46.575 146 77 1 11 156 1293 1437 2.02e-40 150
Msa0391680 MtrunA17_Chr2g0295911 50.000 134 67 0 13 146 1351 1484 3.27e-40 149
Msa0391680 MtrunA17_Chr1g0195691 47.586 145 75 1 13 157 1363 1506 3.97e-40 149
Msa0391680 MtrunA17_Chr2g0295901 50.746 134 66 0 13 146 1348 1481 4.23e-40 149
Msa0391680 MtrunA17_Chr8g0341801 47.260 146 76 1 11 156 275 419 2.94e-38 140
Msa0391680 MtrunA17_Chr2g0333911 45.806 155 81 2 5 159 858 1009 4.37e-37 140
Msa0391680 MtrunA17_Chr5g0410921 34.848 132 86 0 25 156 1093 1224 4.24e-20 90.9
Msa0391680 MtrunA17_Chr5g0410921 32.117 137 93 0 49 185 484 620 1.17e-18 86.7
Msa0391680 MtrunA17_Chr7g0233901 33.846 130 86 0 28 157 464 593 5.89e-20 90.5
Msa0391680 MtrunA17_Chr7g0233901 33.333 132 87 1 26 156 1103 1234 3.55e-16 79.0
Msa0391680 MtrunA17_Chr6g0451911 33.333 147 95 2 13 156 1106 1252 6.44e-20 90.1
Msa0391680 MtrunA17_Chr6g0451911 38.182 110 68 0 48 157 488 597 4.75e-18 84.7
Msa0391680 MtrunA17_Chr8g0344651 38.136 118 72 1 48 164 1369 1486 8.78e-20 89.7
Msa0391680 MtrunA17_Chr8g0344651 35.922 103 66 0 50 152 727 829 2.31e-15 76.6
Msa0391680 MtrunA17_Chr2g0285191 24.138 319 186 9 13 288 489 794 3.61e-19 88.2
Msa0391680 MtrunA17_Chr2g0285191 33.945 109 72 0 48 156 1181 1289 9.93e-14 71.6
Msa0391680 MtrunA17_Chr6g0481921 23.841 302 184 7 25 288 375 668 5.73e-19 87.4
Msa0391680 MtrunA17_Chr6g0481921 34.862 109 71 0 48 156 1055 1163 1.44e-14 74.3
Msa0391680 MtrunA17_Chr3g0138211 33.835 133 88 0 25 157 500 632 6.80e-19 87.0
Msa0391680 MtrunA17_Chr3g0138211 33.981 103 68 0 48 150 1166 1268 1.15e-11 65.5
Msa0391680 MtrunA17_Chr6g0452171 39.091 110 67 0 48 157 488 597 8.17e-19 87.0
Msa0391680 MtrunA17_Chr6g0452171 34.091 132 86 1 26 156 1127 1258 3.44e-17 82.0
Msa0391680 MtrunA17_Chr2g0285301 22.876 306 179 7 25 286 468 760 1.16e-18 86.7
Msa0391680 MtrunA17_Chr2g0285301 30.275 109 76 0 48 156 1149 1257 4.30e-11 63.9
Msa0391680 MtrunA17_Chr4g0041871 40.310 129 74 1 32 157 454 582 1.38e-18 86.3
Msa0391680 MtrunA17_Chr4g0041871 31.293 147 99 2 13 157 1097 1243 4.68e-15 75.9
Msa0391680 MtrunA17_Chr6g0451881 38.182 110 68 0 48 157 488 597 1.39e-18 86.3
Msa0391680 MtrunA17_Chr6g0451881 35.065 154 85 3 26 178 1114 1253 1.23e-17 83.6
Msa0391680 MtrunA17_Chr8g0366481 33.835 133 88 0 23 155 488 620 2.44e-18 85.1
Msa0391680 MtrunA17_Chr6g0452041 34.756 164 92 3 26 188 1126 1275 3.50e-18 85.1
Msa0391680 MtrunA17_Chr6g0452041 37.273 110 69 0 48 157 488 597 3.23e-17 82.0
Msa0391680 MtrunA17_Chr6g0452061 34.091 132 86 1 26 156 636 767 5.77e-18 84.3
Msa0391680 MtrunA17_Chr6g0452061 36.792 106 67 0 52 157 13 118 3.34e-16 79.0
Msa0391680 MtrunA17_Chr6g0452111 34.848 132 85 1 26 156 1125 1256 5.83e-18 84.3
Msa0391680 MtrunA17_Chr6g0452111 38.182 110 68 0 48 157 495 604 2.14e-17 82.8
Msa0391680 MtrunA17_Chr7g0264631 35.075 134 86 1 25 157 1185 1318 7.71e-18 84.0
Msa0391680 MtrunA17_Chr7g0264631 34.146 123 81 0 31 153 536 658 1.41e-15 77.4
Msa0391680 MtrunA17_Chr1g0156821 38.136 118 67 2 34 145 479 596 1.08e-17 83.6
Msa0391680 MtrunA17_Chr1g0156821 32.090 134 91 0 23 156 1096 1229 4.64e-16 78.6
Msa0391680 MtrunA17_Chr3g0123411 37.500 128 78 1 28 153 356 483 1.27e-17 83.6
Msa0391680 MtrunA17_Chr3g0123411 34.884 129 84 0 25 153 1009 1137 1.38e-16 80.5
Msa0391680 MtrunA17_Chr6g0452071 34.848 132 85 1 26 156 320 451 2.49e-17 82.0
Msa0391680 MtrunA17_Chr1g0194031 31.538 130 89 0 28 157 491 620 4.13e-17 81.6
Msa0391680 MtrunA17_Chr2g0285311 30.075 133 93 0 25 157 473 605 6.53e-17 81.3
Msa0391680 MtrunA17_Chr2g0285311 32.110 109 74 0 48 156 1153 1261 6.60e-13 69.3
Msa0391680 MtrunA17_Chr4g0069411 34.483 116 76 0 42 157 517 632 6.68e-17 81.3
Msa0391680 MtrunA17_Chr4g0069411 30.822 146 98 2 13 156 1141 1285 1.03e-13 71.6
Msa0391680 MtrunA17_Chr4g0069351 31.579 133 91 0 25 157 482 614 7.95e-17 80.9
Msa0391680 MtrunA17_Chr4g0069351 33.088 136 89 1 13 146 1127 1262 2.81e-14 73.6
Msa0391680 MtrunA17_Chr3g0119381 31.061 132 91 0 25 156 503 634 8.82e-17 80.9
Msa0391680 MtrunA17_Chr3g0119381 36.735 98 62 0 48 145 1185 1282 2.53e-13 70.5
Msa0391680 MtrunA17_Chr6g0452141 37.273 110 69 0 48 157 489 598 9.74e-17 80.9
Msa0391680 MtrunA17_Chr6g0452141 34.091 132 86 1 26 156 1124 1255 1.00e-16 80.9
Msa0391680 MtrunA17_Chr1g0193991 30.769 130 90 0 28 157 496 625 1.29e-16 80.5
Msa0391680 MtrunA17_Chr1g0193991 32.727 110 74 0 48 157 1172 1281 4.80e-14 72.8
Msa0391680 MtrunA17_Chr6g0474071 36.434 129 82 0 20 148 314 442 1.33e-16 79.7
Msa0391680 MtrunA17_Chr4g0069401 34.545 110 72 0 48 157 500 609 1.34e-16 80.5
Msa0391680 MtrunA17_Chr4g0069401 36.000 100 64 0 48 147 1162 1261 9.36e-13 68.9
Msa0391680 MtrunA17_Chr5g0433051 37.500 120 75 0 28 147 571 690 1.34e-16 80.1
Msa0391680 MtrunA17_Chr1g0180601 33.582 134 88 1 25 157 1159 1292 4.08e-16 79.0
Msa0391680 MtrunA17_Chr1g0180601 34.507 142 89 2 26 163 501 642 4.35e-15 75.9
Msa0391680 MtrunA17_Chr8g0366471 32.710 107 72 0 52 158 18 124 4.15e-16 73.9
Msa0391680 MtrunA17_Chr4g0069361 30.827 133 92 0 25 157 482 614 5.67e-16 78.6
Msa0391680 MtrunA17_Chr4g0069361 32.847 137 90 1 13 147 1127 1263 2.94e-14 73.2
Msa0391680 MtrunA17_Chr1g0178481 36.538 104 66 0 34 137 494 597 6.96e-16 77.8
Msa0391680 MtrunA17_Chr6g0486841 33.588 131 86 1 25 155 1106 1235 8.46e-16 77.8
Msa0391680 MtrunA17_Chr6g0486841 30.172 116 81 0 42 157 480 595 1.29e-12 68.6
Msa0391680 MtrunA17_Chr4g0039821 33.636 110 73 0 48 157 503 612 1.31e-15 77.4
Msa0391680 MtrunA17_Chr4g0039821 33.577 137 89 1 13 147 1125 1261 7.25e-14 72.0
Msa0391680 MtrunA17_Chr6g0453051 31.111 135 89 2 25 157 1112 1244 2.34e-15 76.6
Msa0391680 MtrunA17_Chr6g0453051 34.951 103 67 0 48 150 490 592 1.02e-13 71.6
Msa0391680 MtrunA17_Chr3g0128391 34.286 105 67 1 49 153 443 545 4.49e-15 75.5
Msa0391680 MtrunA17_Chr5g0433071 41.053 95 56 0 53 147 598 692 5.69e-15 75.1
Msa0391680 MtrunA17_Chr4g0061601 34.711 121 79 0 26 146 493 613 7.33e-15 74.7
Msa0391680 MtrunA17_Chr7g0227391 34.677 124 76 2 25 145 530 651 2.73e-14 73.2
Msa0391680 MtrunA17_Chr1g0194001 33.673 98 65 0 48 145 275 372 5.13e-13 68.9
Msa0391680 MtrunA17_Chr5g0412741 34.426 122 74 2 28 145 564 683 5.62e-13 69.3
Msa0391680 MtrunA17_Chr6g0452081 40.260 77 46 0 50 126 152 228 1.52e-12 65.9
Msa0391680 MtrunA17_Chr3g0128381 26.087 138 94 1 26 155 495 632 7.11e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0391680 AT2G34660.3 65.052 289 98 2 13 301 1045 1330 1.54e-105 335
Msa0391680 AT1G30400.2 65.068 292 97 3 13 301 1327 1616 7.18e-105 335
Msa0391680 AT1G30400.1 65.068 292 97 3 13 301 1327 1616 7.18e-105 335
Msa0391680 AT2G34660.1 65.052 289 98 2 13 301 1332 1617 1.97e-104 334
Msa0391680 AT2G34660.2 65.052 289 98 2 13 301 1332 1617 1.97e-104 334
Msa0391680 AT1G30410.5 75.904 166 40 0 13 178 1210 1375 1.29e-74 249
Msa0391680 AT1G30410.1 75.904 166 40 0 13 178 1328 1493 2.06e-74 248
Msa0391680 AT1G30410.2 75.904 166 40 0 13 178 1325 1490 2.22e-74 248
Msa0391680 AT1G30410.6 75.904 166 40 0 13 178 1325 1490 2.22e-74 248
Msa0391680 AT1G30410.4 75.904 166 40 0 13 178 1325 1490 2.22e-74 248
Msa0391680 AT1G30420.1 75.148 169 42 0 13 181 1325 1493 2.40e-74 248
Msa0391680 AT3G59140.1 52.414 145 69 0 13 157 1297 1441 6.68e-48 172
Msa0391680 AT1G04120.1 53.595 153 66 1 13 160 1358 1510 9.58e-47 169
Msa0391680 AT1G04120.3 53.595 153 66 1 13 160 1323 1475 9.64e-47 169
Msa0391680 AT3G13100.2 52.229 157 68 1 13 169 1086 1235 1.29e-46 168
Msa0391680 AT3G13100.1 54.167 144 66 0 13 156 1331 1474 1.96e-46 167
Msa0391680 AT3G62700.1 52.414 145 68 1 13 157 1387 1530 1.29e-45 165
Msa0391680 AT3G13080.1 52.083 144 69 0 13 156 1359 1502 1.36e-44 162
Msa0391680 AT3G60970.1 49.669 151 76 0 7 157 886 1036 8.48e-44 160
Msa0391680 AT3G13090.1 51.389 144 70 0 13 156 1309 1452 1.63e-43 159
Msa0391680 AT3G60160.3 49.351 154 76 1 4 157 1302 1453 2.56e-43 159
Msa0391680 AT3G60160.1 49.351 154 76 1 4 157 1338 1489 2.57e-43 159
Msa0391680 AT1G04120.2 51.634 153 64 2 13 160 1358 1505 5.27e-43 158
Msa0391680 AT2G47800.1 51.724 145 69 1 13 157 1364 1507 5.59e-43 157
Msa0391680 AT3G21250.6 46.541 159 77 2 11 169 887 1037 1.63e-40 150
Msa0391680 AT3G21250.3 46.541 159 77 2 11 169 887 1037 1.63e-40 150
Msa0391680 AT3G21250.4 46.541 159 77 2 11 169 1309 1459 2.68e-40 150
Msa0391680 AT3G21250.5 46.541 159 77 2 11 169 1298 1448 2.79e-40 150
Msa0391680 AT3G21250.2 46.541 159 77 2 11 169 1303 1453 3.07e-40 150
Msa0391680 AT3G21250.1 46.541 159 77 2 11 169 1292 1442 3.18e-40 150
Msa0391680 AT3G13080.2 52.344 128 61 0 29 156 1350 1477 8.16e-39 145
Msa0391680 AT3G13080.5 55.372 121 54 0 13 133 1359 1479 4.74e-38 143
Msa0391680 AT2G07680.6 42.949 156 86 2 4 159 1174 1326 1.32e-33 130
Msa0391680 AT2G07680.3 42.949 156 86 2 4 159 1273 1425 1.75e-33 130
Msa0391680 AT2G07680.1 42.949 156 86 2 4 159 1251 1403 1.80e-33 130
Msa0391680 AT2G07680.4 42.949 156 86 2 4 159 1248 1400 1.83e-33 130
Msa0391680 AT2G07680.5 42.949 156 86 2 4 159 1257 1409 2.08e-33 130
Msa0391680 AT4G18050.1 33.333 135 90 0 23 157 457 591 4.49e-19 88.2
Msa0391680 AT4G18050.1 33.945 109 72 0 48 156 1121 1229 1.98e-13 71.2
Msa0391680 AT4G18050.2 33.333 135 90 0 23 157 467 601 5.58e-19 87.8
Msa0391680 AT4G18050.2 33.945 109 72 0 48 156 1131 1239 2.32e-13 71.2
Msa0391680 AT5G46540.1 26.117 291 179 9 25 286 461 744 7.18e-19 87.4
Msa0391680 AT5G46540.1 30.216 139 97 0 25 163 1110 1248 6.77e-14 72.8
Msa0391680 AT1G27940.2 33.974 156 101 2 8 161 243 398 1.22e-18 86.7
Msa0391680 AT1G27940.2 32.836 134 89 1 25 158 894 1026 1.36e-15 77.8
Msa0391680 AT3G28380.1 35.156 128 83 0 26 153 1102 1229 1.23e-18 87.0
Msa0391680 AT3G28380.1 33.582 134 86 1 26 156 461 594 7.15e-16 78.6
Msa0391680 AT4G01820.2 35.455 110 71 0 48 157 475 584 1.65e-18 86.3
Msa0391680 AT1G27940.1 33.974 156 101 2 8 161 457 612 1.87e-18 86.3
Msa0391680 AT1G27940.1 32.836 134 89 1 25 158 1108 1240 2.32e-15 77.0
Msa0391680 AT3G28415.2 36.719 128 81 0 26 153 1091 1218 2.76e-18 85.9
Msa0391680 AT3G28415.2 32.308 130 88 0 28 157 453 582 2.99e-16 79.7
Msa0391680 AT1G28010.1 35.252 139 89 1 8 145 458 596 2.90e-18 85.9
Msa0391680 AT1G28010.1 35.294 119 76 1 40 158 1125 1242 5.28e-14 73.2
Msa0391680 AT3G28415.1 36.719 128 81 0 26 153 1083 1210 2.95e-18 85.9
Msa0391680 AT3G28415.1 32.308 130 88 0 28 157 445 574 3.24e-16 79.7
Msa0391680 AT4G28620.1 38.017 121 75 0 25 145 541 661 4.50e-18 85.1
Msa0391680 AT4G25960.1 36.697 109 69 0 48 156 1157 1265 7.07e-18 84.7
Msa0391680 AT4G25960.1 29.710 138 97 0 48 185 528 665 5.91e-15 75.9
Msa0391680 AT3G62150.3 32.308 130 88 0 28 157 510 639 1.39e-17 83.6
Msa0391680 AT3G62150.3 31.081 148 98 2 13 157 1143 1289 7.40e-15 75.5
Msa0391680 AT3G62150.2 32.308 130 88 0 28 157 510 639 1.39e-17 83.6
Msa0391680 AT3G62150.2 31.081 148 98 2 13 157 1143 1289 7.40e-15 75.5
Msa0391680 AT3G62150.1 32.308 130 88 0 28 157 510 639 1.39e-17 83.6
Msa0391680 AT3G62150.1 31.081 148 98 2 13 157 1143 1289 7.40e-15 75.5
Msa0391680 AT1G02520.1 33.077 130 87 0 28 157 488 617 1.39e-17 83.6
Msa0391680 AT1G02520.1 30.827 133 92 0 25 157 1139 1271 4.87e-15 76.3
Msa0391680 AT1G02520.2 33.077 130 87 0 28 157 488 617 1.39e-17 83.6
Msa0391680 AT1G02520.2 30.827 133 92 0 25 157 1139 1271 4.87e-15 76.3
Msa0391680 AT1G02520.3 33.077 130 87 0 28 157 488 617 1.39e-17 83.6
Msa0391680 AT1G02520.3 30.827 133 92 0 25 157 1139 1271 4.87e-15 76.3
Msa0391680 AT2G36910.1 34.328 134 87 1 25 157 1128 1261 3.25e-17 82.8
Msa0391680 AT2G36910.1 36.641 131 80 1 26 153 470 600 7.20e-16 78.6
Msa0391680 AT1G10680.1 32.576 132 89 0 25 156 1086 1217 4.22e-17 82.4
Msa0391680 AT1G10680.1 26.230 183 109 2 48 228 488 646 1.27e-16 80.9
Msa0391680 AT4G01820.1 35.455 110 71 0 48 157 475 584 4.42e-17 82.0
Msa0391680 AT4G01820.1 33.636 110 73 0 48 157 1113 1222 3.85e-14 73.6
Msa0391680 AT4G28630.1 36.066 122 78 0 25 146 539 660 4.61e-17 82.0
Msa0391680 AT2G47000.3 32.540 126 85 0 32 157 495 620 4.71e-17 82.0
Msa0391680 AT2G47000.7 32.540 126 85 0 32 157 495 620 4.71e-17 82.0
Msa0391680 AT3G28360.1 34.375 128 84 0 26 153 1088 1215 4.85e-17 82.0
Msa0391680 AT3G28360.1 33.613 119 79 0 28 146 453 571 1.46e-14 74.7
Msa0391680 AT2G47000.2 32.540 126 85 0 32 157 495 620 4.85e-17 82.0
Msa0391680 AT2G47000.6 32.540 126 85 0 32 157 495 620 5.18e-17 82.0
Msa0391680 AT2G47000.6 30.405 148 99 2 13 157 1133 1279 1.79e-14 74.3
Msa0391680 AT2G47000.5 32.540 126 85 0 32 157 495 620 5.18e-17 82.0
Msa0391680 AT2G47000.5 30.405 148 99 2 13 157 1133 1279 1.79e-14 74.3
Msa0391680 AT2G47000.1 32.540 126 85 0 32 157 495 620 5.18e-17 82.0
Msa0391680 AT2G47000.1 30.405 148 99 2 13 157 1133 1279 1.79e-14 74.3
Msa0391680 AT2G47000.4 32.540 126 85 0 32 157 495 620 5.61e-17 82.0
Msa0391680 AT3G28390.1 34.091 132 86 1 26 156 1087 1218 7.64e-17 81.6
Msa0391680 AT3G28390.1 33.962 106 70 0 52 157 478 583 1.71e-13 71.6
Msa0391680 AT1G02530.1 33.333 126 84 0 32 157 479 604 8.22e-17 81.3
Msa0391680 AT1G02530.1 30.827 133 92 0 25 157 1134 1266 7.24e-15 75.5
Msa0391680 AT1G02530.2 33.333 126 84 0 32 157 479 604 8.87e-17 81.3
Msa0391680 AT3G28345.1 36.842 114 72 0 40 153 1116 1229 1.29e-16 80.9
Msa0391680 AT3G28345.1 30.769 130 90 0 28 157 466 595 1.03e-14 75.1
Msa0391680 AT1G10680.2 26.230 183 109 2 48 228 488 646 1.70e-16 80.5
Msa0391680 AT4G01830.2 31.538 130 89 0 28 157 226 355 5.20e-16 79.0
Msa0391680 AT4G01830.2 31.081 148 99 1 13 157 842 989 2.85e-15 76.6
Msa0391680 AT4G01830.1 31.538 130 89 0 28 157 460 589 8.59e-16 78.2
Msa0391680 AT4G01830.1 31.852 135 92 0 23 157 1089 1223 4.14e-15 76.3
Msa0391680 AT3G28860.1 37.755 98 61 0 48 145 492 589 2.00e-15 77.4
Msa0391680 AT3G28860.1 31.111 135 89 2 25 157 1114 1246 1.27e-14 74.7
Msa0391680 AT1G30410.3 80.488 41 8 0 13 53 1325 1365 2.01e-15 77.4
Msa0391680 AT5G03910.1 36.111 108 69 0 32 139 508 615 3.97e-15 76.3
Msa0391680 AT4G25450.3 36.893 103 65 0 48 150 430 532 4.92e-15 75.9
Msa0391680 AT4G25450.1 36.893 103 65 0 48 150 599 701 5.32e-15 75.9
Msa0391680 AT5G58270.1 33.884 121 80 0 25 145 581 701 1.15e-13 71.6
Msa0391680 AT1G70610.2 33.594 128 79 2 25 148 379 504 1.62e-13 71.2
Msa0391680 AT1G70610.1 33.594 128 79 2 25 148 560 685 2.01e-13 70.9
Msa0391680 AT5G39040.1 31.429 140 94 1 6 145 484 621 1.39e-12 68.6

Find 62 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCATCCTTTGTTCTATTA+AGG 0.162940 3_2:+4461857 None:intergenic
TCTTTGTCATCTTTAGTATT+TGG 0.182579 3_2:+4461883 None:intergenic
TTGAAATAGTTCTTTCTAAA+AGG 0.201181 3_2:+4461125 None:intergenic
CTTCAAAATCAGGTTCTAAT+TGG 0.213892 3_2:+4461567 None:intergenic
AACACAGCGATGCTGATTTA+TGG 0.217753 3_2:-4462987 Msa0391680:CDS
TATTTGTGCAGCTTAGTATT+TGG 0.252293 3_2:-4462045 Msa0391680:CDS
GCATCGCTGTGTTCACTAAA+TGG 0.256743 3_2:+4462997 None:intergenic
GACAGTTAGCATCTACAAAT+TGG 0.316511 3_2:-4461969 Msa0391680:CDS
TGCTGATTTATGGGAAGCTT+TGG 0.324687 3_2:-4462977 Msa0391680:CDS
CACAAATATTCGGCATTTGC+AGG 0.343091 3_2:+4462060 None:intergenic
GTAATAAGAAGAAATTCTTT+TGG 0.354051 3_2:-4462934 Msa0391680:CDS
AGAAACTGCATTCTACAAAA+TGG 0.356475 3_2:-4462097 Msa0391680:CDS
ACAAAAGAAAAGAGTATAAG+AGG 0.358981 3_2:+4461243 None:intergenic
CAGGTCTTGCTGTCTTGATC+AGG 0.369263 3_2:-4461613 Msa0391680:CDS
TACTAAGCTGCACAAATATT+CGG 0.375542 3_2:+4462050 None:intergenic
AAAGATCTCCCTTCAAAATC+AGG 0.390710 3_2:+4461557 None:intergenic
CAGCATCTAGCAACAGAATT+CGG 0.391399 3_2:+4462559 None:intergenic
CTTTAGTATTTGGACTTTGA+AGG 0.397586 3_2:+4461893 None:intergenic
ACACTTCAGGAAGTTCTAGA+AGG 0.411437 3_2:-4461829 Msa0391680:CDS
CCATAGGTTTCTTCTACTAA+AGG 0.412073 3_2:+4461335 None:intergenic
CTCAGCCGAGTTTCAAACCT+TGG 0.428698 3_2:+4461409 None:intergenic
GGATGCAGTAGTTACACTTC+AGG 0.429180 3_2:-4461842 Msa0391680:CDS
ACACAGCGATGCTGATTTAT+GGG 0.437963 3_2:-4462986 Msa0391680:CDS
ACTCTATATAAAGTTATTGA+AGG 0.456292 3_2:-4461739 Msa0391680:intron
ATCATGTTCCTACAGATAGA+TGG 0.459428 3_2:-4461768 Msa0391680:CDS
TTCAATAACTTTATATAGAG+TGG 0.476495 3_2:+4461741 None:intergenic
TACAAAATGGTTCAAAGTAC+CGG 0.480376 3_2:-4462084 Msa0391680:CDS
AATCTGAAGAGTCTTGTGAT+TGG 0.490342 3_2:+4461273 None:intergenic
CGAATTCTGTTGCTAGATGC+TGG 0.500270 3_2:-4462558 Msa0391680:CDS
GGAGGAGACAATTTCAGTGT+TGG 0.511863 3_2:-4462768 Msa0391680:CDS
TGCATGAATGAAATTCTTGT+CGG 0.520845 3_2:+4462628 None:intergenic
ATATTCGGCATTTGCAGGAC+CGG 0.522574 3_2:+4462065 None:intergenic
TGTCTTGATCAGGTTACCTC+AGG 0.525349 3_2:-4461603 Msa0391680:CDS
CCTTTAGTAGAAGAAACCTA+TGG 0.533153 3_2:-4461335 Msa0391680:three_prime_UTR
ACTGAAATTGTCTCCTCCCT+CGG 0.534402 3_2:+4462773 None:intergenic
TAGATGCTAACTGTCTCATA+CGG 0.541424 3_2:+4461977 None:intergenic
TGTGCAGCTTAGTATTTGGA+AGG 0.547855 3_2:-4462041 Msa0391680:CDS
TTTATGGGAAGCTTTGGAAA+GGG 0.554908 3_2:-4462971 Msa0391680:CDS
CGAATAAAGGTTTCCGAGGG+AGG 0.563610 3_2:-4462786 Msa0391680:intron
AAAATAACAAGCAGCACAAG+AGG 0.566648 3_2:+4461063 None:intergenic
ATAAAATAAAAGAACTCAGA+GGG 0.566967 3_2:-4461304 Msa0391680:three_prime_UTR
GCAAACCAAGGTTTGAAACT+CGG 0.569146 3_2:-4461414 Msa0391680:three_prime_UTR
AATAAAATAAAAGAACTCAG+AGG 0.570171 3_2:-4461305 Msa0391680:three_prime_UTR
TCTGTTGCTAGATGCTGGCA+AGG 0.575809 3_2:-4462553 Msa0391680:intron
ATTTATGGGAAGCTTTGGAA+AGG 0.580521 3_2:-4462972 Msa0391680:CDS
TACATGCAATCAAATATCAA+AGG 0.582178 3_2:-4461488 Msa0391680:three_prime_UTR
AGCATTGCTAAGAAGATCAA+AGG 0.587251 3_2:-4462718 Msa0391680:CDS
TGGTTAAAGTTGTTGTCCTG+AGG 0.592631 3_2:+4461587 None:intergenic
ACAATTTCAGTGTTGGACAA+AGG 0.592840 3_2:-4462761 Msa0391680:CDS
CAGCAGCAGTAGCTTCATCA+AGG 0.595605 3_2:+4462688 None:intergenic
AGGTAATTCTATTCGAAGCA+CGG 0.601182 3_2:+4461355 None:intergenic
CACCGAATAAAGGTTTCCGA+GGG 0.604891 3_2:-4462789 Msa0391680:intron
AAATGAATATAGCAAGGAGT+CGG 0.604914 3_2:-4462004 Msa0391680:CDS
GCACCGAATAAAGGTTTCCG+AGG 0.605857 3_2:-4462790 Msa0391680:intron
GTGGACCACCATCTATCTGT+AGG 0.620277 3_2:+4461760 None:intergenic
CACGGTCAGACATAAAATGT+AGG 0.622528 3_2:+4461373 None:intergenic
AGACATCCTTAATAGAACAA+AGG 0.640938 3_2:-4461863 Msa0391680:CDS
CAATTCAAATGAATATAGCA+AGG 0.651154 3_2:-4462010 Msa0391680:CDS
GAGATTAGTCTCACACAATG+TGG 0.664163 3_2:-4461436 Msa0391680:three_prime_UTR
TCACACAATGTGGCAAACCA+AGG 0.664754 3_2:-4461426 Msa0391680:three_prime_UTR
ATGTTCCTACAGATAGATGG+TGG 0.678228 3_2:-4461765 Msa0391680:CDS
TATCAAAGGAATATCGAACG+TGG 0.720882 3_2:-4461474 Msa0391680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! NNNNNNNNNNCTCTATTTTT+AGG - chr3_2:4461358-4461377 Msa0391680:three_prime_UTR 10.0%
!!! NNNNNNNNNNCTCTATTTTT+AGG - chr3_2:4461358-4461377 Msa0391680:three_prime_UTR 10.0%
!!! TTTTTTTGTCACTATATAAT+TGG - chr3_2:4461955-4461974 Msa0391680:CDS 15.0%
!!! AATACACTAAACTTTTAATT+TGG - chr3_2:4461991-4462010 Msa0391680:CDS 15.0%
!!! ATTGATAACTTTTTTATACA+GGG + chr3_2:4462018-4462037 None:intergenic 15.0%
!!! AATTGATAACTTTTTTATAC+AGG + chr3_2:4462019-4462038 None:intergenic 15.0%
!!! TATTTTATTTTGTTTTCCAT+AGG + chr3_2:4463084-4463103 None:intergenic 15.0%
!!! TTTTTTTGTCACTATATAAT+TGG - chr3_2:4461955-4461974 Msa0391680:CDS 15.0%
!!! AATACACTAAACTTTTAATT+TGG - chr3_2:4461991-4462010 Msa0391680:CDS 15.0%
!!! ATTGATAACTTTTTTATACA+GGG + chr3_2:4462018-4462037 None:intergenic 15.0%
!!! AATTGATAACTTTTTTATAC+AGG + chr3_2:4462019-4462038 None:intergenic 15.0%
!!! TATTTTATTTTGTTTTCCAT+AGG + chr3_2:4463084-4463103 None:intergenic 15.0%
!!! GGTTATTCATTTCATTTTTA+GGG + chr3_2:4461158-4461177 None:intergenic 20.0%
!!! TTCTTTCTATTCTATTTCTA+GGG + chr3_2:4461179-4461198 None:intergenic 20.0%
!!! GTAATAAGAAGAAATTCTTT+TGG - chr3_2:4461466-4461485 Msa0391680:three_prime_UTR 20.0%
!!! GTATCATTTTAACGTATATA+GGG + chr3_2:4462046-4462065 None:intergenic 20.0%
!!! TGTATCATTTTAACGTATAT+AGG + chr3_2:4462047-4462066 None:intergenic 20.0%
!! ATGAATGTCATGTTTATTTA+AGG + chr3_2:4462197-4462216 None:intergenic 20.0%
!! TTCAATAACTTTATATAGAG+TGG + chr3_2:4462662-4462681 None:intergenic 20.0%
!! ACTCTATATAAAGTTATTGA+AGG - chr3_2:4462661-4462680 Msa0391680:CDS 20.0%
!! AGAAATTTACAAATTTCAGA+TGG + chr3_2:4462744-4462763 None:intergenic 20.0%
!! AATAAAATAAAAGAACTCAG+AGG - chr3_2:4463095-4463114 Msa0391680:intron 20.0%
!! ATAAAATAAAAGAACTCAGA+GGG - chr3_2:4463096-4463115 Msa0391680:intron 20.0%
!! TTGAAATAGTTCTTTCTAAA+AGG + chr3_2:4463278-4463297 None:intergenic 20.0%
!!! TTTTAGAAAGAACTATTTCA+AGG - chr3_2:4463277-4463296 Msa0391680:intron 20.0%
!!! GGTTATTCATTTCATTTTTA+GGG + chr3_2:4461158-4461177 None:intergenic 20.0%
!!! TTCTTTCTATTCTATTTCTA+GGG + chr3_2:4461179-4461198 None:intergenic 20.0%
!!! GTAATAAGAAGAAATTCTTT+TGG - chr3_2:4461466-4461485 Msa0391680:three_prime_UTR 20.0%
!!! GTATCATTTTAACGTATATA+GGG + chr3_2:4462046-4462065 None:intergenic 20.0%
!!! TGTATCATTTTAACGTATAT+AGG + chr3_2:4462047-4462066 None:intergenic 20.0%
!! ATGAATGTCATGTTTATTTA+AGG + chr3_2:4462197-4462216 None:intergenic 20.0%
!! TTCAATAACTTTATATAGAG+TGG + chr3_2:4462662-4462681 None:intergenic 20.0%
!! ACTCTATATAAAGTTATTGA+AGG - chr3_2:4462661-4462680 Msa0391680:CDS 20.0%
!! AGAAATTTACAAATTTCAGA+TGG + chr3_2:4462744-4462763 None:intergenic 20.0%
!! AATAAAATAAAAGAACTCAG+AGG - chr3_2:4463095-4463114 Msa0391680:intron 20.0%
!! ATAAAATAAAAGAACTCAGA+GGG - chr3_2:4463096-4463115 Msa0391680:intron 20.0%
!! TTGAAATAGTTCTTTCTAAA+AGG + chr3_2:4463278-4463297 None:intergenic 20.0%
!!! TTTTAGAAAGAACTATTTCA+AGG - chr3_2:4463277-4463296 Msa0391680:intron 20.0%
! GATGCAATTAGAAAAAGTAA+CGG - chr3_2:4461085-4461104 Msa0391680:three_prime_UTR 25.0%
! AGAATTAAGAGAAGAAAGAA+AGG - chr3_2:4461114-4461133 Msa0391680:three_prime_UTR 25.0%
!!! GGGTTATTCATTTCATTTTT+AGG + chr3_2:4461159-4461178 None:intergenic 25.0%
!! CTTCTTTCTATTCTATTTCT+AGG + chr3_2:4461180-4461199 None:intergenic 25.0%
! TGATAATAGTCATCAAAACT+TGG - chr3_2:4461537-4461556 Msa0391680:exon 25.0%
!!! AAGTGTATTTTTCAACTGAA+AGG - chr3_2:4461562-4461581 Msa0391680:CDS 25.0%
!!! TTTTACTTATCATGGTTCTA+TGG - chr3_2:4461917-4461936 Msa0391680:CDS 25.0%
!! ATGGTTCTATGGAAATTAAT+TGG - chr3_2:4461928-4461947 Msa0391680:CDS 25.0%
!!! TCACTATATAATTGGTTCTA+TGG - chr3_2:4461963-4461982 Msa0391680:CDS 25.0%
! CAATTCAAATGAATATAGCA+AGG - chr3_2:4462390-4462409 Msa0391680:intron 25.0%
! TCTTTGTCATCTTTAGTATT+TGG + chr3_2:4462520-4462539 None:intergenic 25.0%
! ATATGTTCAATTATTCCTTC+AGG - chr3_2:4462768-4462787 Msa0391680:CDS 25.0%
!! AATTAGAACCTGATTTTGAA+GGG - chr3_2:4462835-4462854 Msa0391680:intron 25.0%
! TACATGCAATCAAATATCAA+AGG - chr3_2:4462912-4462931 Msa0391680:intron 25.0%
!! ACAAAAGAAAAGAGTATAAG+AGG + chr3_2:4463160-4463179 None:intergenic 25.0%
!! AATTTTTATGTGTGACAAGA+AGG + chr3_2:4463244-4463263 None:intergenic 25.0%
! TCTTGTCACACATAAAAATT+AGG - chr3_2:4463244-4463263 Msa0391680:intron 25.0%
! CTTGTCACACATAAAAATTA+GGG - chr3_2:4463245-4463264 Msa0391680:intron 25.0%
! GATGCAATTAGAAAAAGTAA+CGG - chr3_2:4461085-4461104 Msa0391680:three_prime_UTR 25.0%
! AGAATTAAGAGAAGAAAGAA+AGG - chr3_2:4461114-4461133 Msa0391680:three_prime_UTR 25.0%
!!! GGGTTATTCATTTCATTTTT+AGG + chr3_2:4461159-4461178 None:intergenic 25.0%
!! CTTCTTTCTATTCTATTTCT+AGG + chr3_2:4461180-4461199 None:intergenic 25.0%
! TGATAATAGTCATCAAAACT+TGG - chr3_2:4461537-4461556 Msa0391680:exon 25.0%
!!! AAGTGTATTTTTCAACTGAA+AGG - chr3_2:4461562-4461581 Msa0391680:CDS 25.0%
!!! TTTTACTTATCATGGTTCTA+TGG - chr3_2:4461917-4461936 Msa0391680:CDS 25.0%
!! ATGGTTCTATGGAAATTAAT+TGG - chr3_2:4461928-4461947 Msa0391680:CDS 25.0%
!!! TCACTATATAATTGGTTCTA+TGG - chr3_2:4461963-4461982 Msa0391680:CDS 25.0%
! CAATTCAAATGAATATAGCA+AGG - chr3_2:4462390-4462409 Msa0391680:intron 25.0%
! TCTTTGTCATCTTTAGTATT+TGG + chr3_2:4462520-4462539 None:intergenic 25.0%
! ATATGTTCAATTATTCCTTC+AGG - chr3_2:4462768-4462787 Msa0391680:CDS 25.0%
!! AATTAGAACCTGATTTTGAA+GGG - chr3_2:4462835-4462854 Msa0391680:intron 25.0%
! TACATGCAATCAAATATCAA+AGG - chr3_2:4462912-4462931 Msa0391680:intron 25.0%
!! ACAAAAGAAAAGAGTATAAG+AGG + chr3_2:4463160-4463179 None:intergenic 25.0%
!! AATTTTTATGTGTGACAAGA+AGG + chr3_2:4463244-4463263 None:intergenic 25.0%
! TCTTGTCACACATAAAAATT+AGG - chr3_2:4463244-4463263 Msa0391680:intron 25.0%
! CTTGTCACACATAAAAATTA+GGG - chr3_2:4463245-4463264 Msa0391680:intron 25.0%
! CTTTTTCTAATTGCATCGAA+TGG + chr3_2:4461082-4461101 None:intergenic 30.0%
! TTATCTTTTGCACCGAATAA+AGG - chr3_2:4461601-4461620 Msa0391680:CDS 30.0%
TGCATGAATGAAATTCTTGT+CGG + chr3_2:4461775-4461794 None:intergenic 30.0%
TATAGTTCATTCATGCTACT+TGG + chr3_2:4461878-4461897 None:intergenic 30.0%
! CTTGCATGTTTTACTTATCA+TGG - chr3_2:4461909-4461928 Msa0391680:CDS 30.0%
! TCATTTTGTAAGAGTTTCTC+AGG + chr3_2:4462283-4462302 None:intergenic 30.0%
AGAAACTGCATTCTACAAAA+TGG - chr3_2:4462303-4462322 Msa0391680:intron 30.0%
TACAAAATGGTTCAAAGTAC+CGG - chr3_2:4462316-4462335 Msa0391680:intron 30.0%
TACTAAGCTGCACAAATATT+CGG + chr3_2:4462353-4462372 None:intergenic 30.0%
TATTTGTGCAGCTTAGTATT+TGG - chr3_2:4462355-4462374 Msa0391680:intron 30.0%
AAATGAATATAGCAAGGAGT+CGG - chr3_2:4462396-4462415 Msa0391680:intron 30.0%
CTTTAGTATTTGGACTTTGA+AGG + chr3_2:4462510-4462529 None:intergenic 30.0%
AGACATCCTTAATAGAACAA+AGG - chr3_2:4462537-4462556 Msa0391680:intron 30.0%
! CTTCAAAATCAGGTTCTAAT+TGG + chr3_2:4462836-4462855 None:intergenic 30.0%
! CAATTAGAACCTGATTTTGA+AGG - chr3_2:4462834-4462853 Msa0391680:intron 30.0%
! CTTTTTCTAATTGCATCGAA+TGG + chr3_2:4461082-4461101 None:intergenic 30.0%
! TTATCTTTTGCACCGAATAA+AGG - chr3_2:4461601-4461620 Msa0391680:CDS 30.0%
TGCATGAATGAAATTCTTGT+CGG + chr3_2:4461775-4461794 None:intergenic 30.0%
TATAGTTCATTCATGCTACT+TGG + chr3_2:4461878-4461897 None:intergenic 30.0%
! CTTGCATGTTTTACTTATCA+TGG - chr3_2:4461909-4461928 Msa0391680:CDS 30.0%
! TCATTTTGTAAGAGTTTCTC+AGG + chr3_2:4462283-4462302 None:intergenic 30.0%
AGAAACTGCATTCTACAAAA+TGG - chr3_2:4462303-4462322 Msa0391680:intron 30.0%
TACAAAATGGTTCAAAGTAC+CGG - chr3_2:4462316-4462335 Msa0391680:intron 30.0%
TACTAAGCTGCACAAATATT+CGG + chr3_2:4462353-4462372 None:intergenic 30.0%
TATTTGTGCAGCTTAGTATT+TGG - chr3_2:4462355-4462374 Msa0391680:intron 30.0%
AAATGAATATAGCAAGGAGT+CGG - chr3_2:4462396-4462415 Msa0391680:intron 30.0%
CTTTAGTATTTGGACTTTGA+AGG + chr3_2:4462510-4462529 None:intergenic 30.0%
AGACATCCTTAATAGAACAA+AGG - chr3_2:4462537-4462556 Msa0391680:intron 30.0%
! CTTCAAAATCAGGTTCTAAT+TGG + chr3_2:4462836-4462855 None:intergenic 30.0%
! CAATTAGAACCTGATTTTGA+AGG - chr3_2:4462834-4462853 Msa0391680:intron 30.0%
GCAATTAGAAAAAGTAACGG+TGG - chr3_2:4461088-4461107 Msa0391680:three_prime_UTR 35.0%
ATTAGAAAAAGTAACGGTGG+TGG - chr3_2:4461091-4461110 Msa0391680:three_prime_UTR 35.0%
TAGAAAGAAGAGAGAGAAGA+AGG - chr3_2:4461190-4461209 Msa0391680:three_prime_UTR 35.0%
!! ATTTATGGGAAGCTTTGGAA+AGG - chr3_2:4461428-4461447 Msa0391680:three_prime_UTR 35.0%
!! TTTATGGGAAGCTTTGGAAA+GGG - chr3_2:4461429-4461448 Msa0391680:three_prime_UTR 35.0%
! ACAATTTCAGTGTTGGACAA+AGG - chr3_2:4461639-4461658 Msa0391680:intron 35.0%
AGCATTGCTAAGAAGATCAA+AGG - chr3_2:4461682-4461701 Msa0391680:intron 35.0%
! ATCAACCACATGTTGGTAAA+GGG + chr3_2:4462073-4462092 None:intergenic 35.0%
TTTCACACACCTTAAGTAAG+TGG - chr3_2:4462107-4462126 Msa0391680:CDS 35.0%
TTTCTTCGTATGCAAAAGTC+AGG + chr3_2:4462147-4462166 None:intergenic 35.0%
! TTTTGCATACGAAGAAAACC+TGG - chr3_2:4462150-4462169 Msa0391680:intron 35.0%
CATCATCTTGTATGCTTTAC+AGG - chr3_2:4462240-4462259 Msa0391680:intron 35.0%
TAGATGCTAACTGTCTCATA+CGG + chr3_2:4462426-4462445 None:intergenic 35.0%
GACAGTTAGCATCTACAAAT+TGG - chr3_2:4462431-4462450 Msa0391680:intron 35.0%
CTGCATCCTTTGTTCTATTA+AGG + chr3_2:4462546-4462565 None:intergenic 35.0%
ATCATGTTCCTACAGATAGA+TGG - chr3_2:4462632-4462651 Msa0391680:CDS 35.0%
AAAGATCTCCCTTCAAAATC+AGG + chr3_2:4462846-4462865 None:intergenic 35.0%
TATCAAAGGAATATCGAACG+TGG - chr3_2:4462926-4462945 Msa0391680:CDS 35.0%
AGGTAATTCTATTCGAAGCA+CGG + chr3_2:4463048-4463067 None:intergenic 35.0%
CCATAGGTTTCTTCTACTAA+AGG + chr3_2:4463068-4463087 None:intergenic 35.0%
CCTTTAGTAGAAGAAACCTA+TGG - chr3_2:4463065-4463084 Msa0391680:intron 35.0%
! AATCTGAAGAGTCTTGTGAT+TGG + chr3_2:4463130-4463149 None:intergenic 35.0%
GCAATTAGAAAAAGTAACGG+TGG - chr3_2:4461088-4461107 Msa0391680:three_prime_UTR 35.0%
ATTAGAAAAAGTAACGGTGG+TGG - chr3_2:4461091-4461110 Msa0391680:three_prime_UTR 35.0%
TAGAAAGAAGAGAGAGAAGA+AGG - chr3_2:4461190-4461209 Msa0391680:three_prime_UTR 35.0%
!! ATTTATGGGAAGCTTTGGAA+AGG - chr3_2:4461428-4461447 Msa0391680:three_prime_UTR 35.0%
!! TTTATGGGAAGCTTTGGAAA+GGG - chr3_2:4461429-4461448 Msa0391680:three_prime_UTR 35.0%
! ACAATTTCAGTGTTGGACAA+AGG - chr3_2:4461639-4461658 Msa0391680:intron 35.0%
AGCATTGCTAAGAAGATCAA+AGG - chr3_2:4461682-4461701 Msa0391680:intron 35.0%
! ATCAACCACATGTTGGTAAA+GGG + chr3_2:4462073-4462092 None:intergenic 35.0%
TTTCACACACCTTAAGTAAG+TGG - chr3_2:4462107-4462126 Msa0391680:CDS 35.0%
TTTCTTCGTATGCAAAAGTC+AGG + chr3_2:4462147-4462166 None:intergenic 35.0%
! TTTTGCATACGAAGAAAACC+TGG - chr3_2:4462150-4462169 Msa0391680:intron 35.0%
CATCATCTTGTATGCTTTAC+AGG - chr3_2:4462240-4462259 Msa0391680:intron 35.0%
TAGATGCTAACTGTCTCATA+CGG + chr3_2:4462426-4462445 None:intergenic 35.0%
GACAGTTAGCATCTACAAAT+TGG - chr3_2:4462431-4462450 Msa0391680:intron 35.0%
CTGCATCCTTTGTTCTATTA+AGG + chr3_2:4462546-4462565 None:intergenic 35.0%
ATCATGTTCCTACAGATAGA+TGG - chr3_2:4462632-4462651 Msa0391680:CDS 35.0%
AAAGATCTCCCTTCAAAATC+AGG + chr3_2:4462846-4462865 None:intergenic 35.0%
TATCAAAGGAATATCGAACG+TGG - chr3_2:4462926-4462945 Msa0391680:CDS 35.0%
AGGTAATTCTATTCGAAGCA+CGG + chr3_2:4463048-4463067 None:intergenic 35.0%
CCATAGGTTTCTTCTACTAA+AGG + chr3_2:4463068-4463087 None:intergenic 35.0%
CCTTTAGTAGAAGAAACCTA+TGG - chr3_2:4463065-4463084 Msa0391680:intron 35.0%
! AATCTGAAGAGTCTTGTGAT+TGG + chr3_2:4463130-4463149 None:intergenic 35.0%
!! AACACAGCGATGCTGATTTA+TGG - chr3_2:4461413-4461432 Msa0391680:three_prime_UTR 40.0%
!! ACACAGCGATGCTGATTTAT+GGG - chr3_2:4461414-4461433 Msa0391680:three_prime_UTR 40.0%
!! TGCTGATTTATGGGAAGCTT+TGG - chr3_2:4461423-4461442 Msa0391680:three_prime_UTR 40.0%
! TTCTTTTGGTCTAGATGCTC+AGG - chr3_2:4461480-4461499 Msa0391680:three_prime_UTR 40.0%
CAGCATCTAGCAACAGAATT+CGG + chr3_2:4461844-4461863 None:intergenic 40.0%
! TCAACCACATGTTGGTAAAG+GGG + chr3_2:4462072-4462091 None:intergenic 40.0%
! GATCAACCACATGTTGGTAA+AGG + chr3_2:4462074-4462093 None:intergenic 40.0%
ACACCTTAAGTAAGTGGTCA+GGG - chr3_2:4462113-4462132 Msa0391680:CDS 40.0%
AATCCCTGACCACTTACTTA+AGG + chr3_2:4462119-4462138 None:intergenic 40.0%
CACAAATATTCGGCATTTGC+AGG + chr3_2:4462343-4462362 None:intergenic 40.0%
TGTGCAGCTTAGTATTTGGA+AGG - chr3_2:4462359-4462378 Msa0391680:intron 40.0%
!! ACACTTCAGGAAGTTCTAGA+AGG - chr3_2:4462571-4462590 Msa0391680:CDS 40.0%
ATGTTCCTACAGATAGATGG+TGG - chr3_2:4462635-4462654 Msa0391680:CDS 40.0%
TGGTTAAAGTTGTTGTCCTG+AGG + chr3_2:4462816-4462835 None:intergenic 40.0%
!! GAGATTAGTCTCACACAATG+TGG - chr3_2:4462964-4462983 Msa0391680:CDS 40.0%
! GCAAACCAAGGTTTGAAACT+CGG - chr3_2:4462986-4463005 Msa0391680:CDS 40.0%
CACGGTCAGACATAAAATGT+AGG + chr3_2:4463030-4463049 None:intergenic 40.0%
!! AACACAGCGATGCTGATTTA+TGG - chr3_2:4461413-4461432 Msa0391680:three_prime_UTR 40.0%
!! ACACAGCGATGCTGATTTAT+GGG - chr3_2:4461414-4461433 Msa0391680:three_prime_UTR 40.0%
!! TGCTGATTTATGGGAAGCTT+TGG - chr3_2:4461423-4461442 Msa0391680:three_prime_UTR 40.0%
! TTCTTTTGGTCTAGATGCTC+AGG - chr3_2:4461480-4461499 Msa0391680:three_prime_UTR 40.0%
CAGCATCTAGCAACAGAATT+CGG + chr3_2:4461844-4461863 None:intergenic 40.0%
! TCAACCACATGTTGGTAAAG+GGG + chr3_2:4462072-4462091 None:intergenic 40.0%
! GATCAACCACATGTTGGTAA+AGG + chr3_2:4462074-4462093 None:intergenic 40.0%
ACACCTTAAGTAAGTGGTCA+GGG - chr3_2:4462113-4462132 Msa0391680:CDS 40.0%
AATCCCTGACCACTTACTTA+AGG + chr3_2:4462119-4462138 None:intergenic 40.0%
CACAAATATTCGGCATTTGC+AGG + chr3_2:4462343-4462362 None:intergenic 40.0%
TGTGCAGCTTAGTATTTGGA+AGG - chr3_2:4462359-4462378 Msa0391680:intron 40.0%
!! ACACTTCAGGAAGTTCTAGA+AGG - chr3_2:4462571-4462590 Msa0391680:CDS 40.0%
ATGTTCCTACAGATAGATGG+TGG - chr3_2:4462635-4462654 Msa0391680:CDS 40.0%
TGGTTAAAGTTGTTGTCCTG+AGG + chr3_2:4462816-4462835 None:intergenic 40.0%
!! GAGATTAGTCTCACACAATG+TGG - chr3_2:4462964-4462983 Msa0391680:CDS 40.0%
! GCAAACCAAGGTTTGAAACT+CGG - chr3_2:4462986-4463005 Msa0391680:CDS 40.0%
CACGGTCAGACATAAAATGT+AGG + chr3_2:4463030-4463049 None:intergenic 40.0%
GCATCGCTGTGTTCACTAAA+TGG + chr3_2:4461406-4461425 None:intergenic 45.0%
CACCGAATAAAGGTTTCCGA+GGG - chr3_2:4461611-4461630 Msa0391680:CDS 45.0%
CTCCCTCGGAAACCTTTATT+CGG + chr3_2:4461616-4461635 None:intergenic 45.0%
ACTGAAATTGTCTCCTCCCT+CGG + chr3_2:4461630-4461649 None:intergenic 45.0%
GGAGGAGACAATTTCAGTGT+TGG - chr3_2:4461632-4461651 Msa0391680:intron 45.0%
CGAATTCTGTTGCTAGATGC+TGG - chr3_2:4461842-4461861 Msa0391680:CDS 45.0%
CATACCCCTTTACCAACATG+TGG - chr3_2:4462065-4462084 Msa0391680:CDS 45.0%
CACACCTTAAGTAAGTGGTC+AGG - chr3_2:4462112-4462131 Msa0391680:CDS 45.0%
GCATACGAAGAAAACCTGGT+TGG - chr3_2:4462154-4462173 Msa0391680:intron 45.0%
ATATTCGGCATTTGCAGGAC+CGG + chr3_2:4462338-4462357 None:intergenic 45.0%
GGATGCAGTAGTTACACTTC+AGG - chr3_2:4462558-4462577 Msa0391680:CDS 45.0%
ATCAAGACAGCAAGACCTGA+AGG + chr3_2:4462786-4462805 None:intergenic 45.0%
TGTCTTGATCAGGTTACCTC+AGG - chr3_2:4462797-4462816 Msa0391680:intron 45.0%
TCACACAATGTGGCAAACCA+AGG - chr3_2:4462974-4462993 Msa0391680:CDS 45.0%
GCATCGCTGTGTTCACTAAA+TGG + chr3_2:4461406-4461425 None:intergenic 45.0%
CACCGAATAAAGGTTTCCGA+GGG - chr3_2:4461611-4461630 Msa0391680:CDS 45.0%
CTCCCTCGGAAACCTTTATT+CGG + chr3_2:4461616-4461635 None:intergenic 45.0%
ACTGAAATTGTCTCCTCCCT+CGG + chr3_2:4461630-4461649 None:intergenic 45.0%
GGAGGAGACAATTTCAGTGT+TGG - chr3_2:4461632-4461651 Msa0391680:intron 45.0%
CGAATTCTGTTGCTAGATGC+TGG - chr3_2:4461842-4461861 Msa0391680:CDS 45.0%
CATACCCCTTTACCAACATG+TGG - chr3_2:4462065-4462084 Msa0391680:CDS 45.0%
CACACCTTAAGTAAGTGGTC+AGG - chr3_2:4462112-4462131 Msa0391680:CDS 45.0%
GCATACGAAGAAAACCTGGT+TGG - chr3_2:4462154-4462173 Msa0391680:intron 45.0%
ATATTCGGCATTTGCAGGAC+CGG + chr3_2:4462338-4462357 None:intergenic 45.0%
GGATGCAGTAGTTACACTTC+AGG - chr3_2:4462558-4462577 Msa0391680:CDS 45.0%
ATCAAGACAGCAAGACCTGA+AGG + chr3_2:4462786-4462805 None:intergenic 45.0%
TGTCTTGATCAGGTTACCTC+AGG - chr3_2:4462797-4462816 Msa0391680:intron 45.0%
TCACACAATGTGGCAAACCA+AGG - chr3_2:4462974-4462993 Msa0391680:CDS 45.0%
GCACCGAATAAAGGTTTCCG+AGG - chr3_2:4461610-4461629 Msa0391680:CDS 50.0%
CGAATAAAGGTTTCCGAGGG+AGG - chr3_2:4461614-4461633 Msa0391680:intron 50.0%
CAGCAGCAGTAGCTTCATCA+AGG + chr3_2:4461715-4461734 None:intergenic 50.0%
TCTGTTGCTAGATGCTGGCA+AGG - chr3_2:4461847-4461866 Msa0391680:CDS 50.0%
CAACATGTGGTTGATCCGAG+CGG - chr3_2:4462078-4462097 Msa0391680:CDS 50.0%
TGTGTGAAACCCTTACCGCT+CGG + chr3_2:4462096-4462115 None:intergenic 50.0%
GAAAACCTGGTTGGAGTGTG+TGG - chr3_2:4462163-4462182 Msa0391680:intron 50.0%
GTGGACCACCATCTATCTGT+AGG + chr3_2:4462643-4462662 None:intergenic 50.0%
! CAGGTCTTGCTGTCTTGATC+AGG - chr3_2:4462787-4462806 Msa0391680:intron 50.0%
CTCAGCCGAGTTTCAAACCT+TGG + chr3_2:4462994-4463013 None:intergenic 50.0%
GCACCGAATAAAGGTTTCCG+AGG - chr3_2:4461610-4461629 Msa0391680:CDS 50.0%
CGAATAAAGGTTTCCGAGGG+AGG - chr3_2:4461614-4461633 Msa0391680:intron 50.0%
CAGCAGCAGTAGCTTCATCA+AGG + chr3_2:4461715-4461734 None:intergenic 50.0%
TCTGTTGCTAGATGCTGGCA+AGG - chr3_2:4461847-4461866 Msa0391680:CDS 50.0%
CAACATGTGGTTGATCCGAG+CGG - chr3_2:4462078-4462097 Msa0391680:CDS 50.0%
TGTGTGAAACCCTTACCGCT+CGG + chr3_2:4462096-4462115 None:intergenic 50.0%
GAAAACCTGGTTGGAGTGTG+TGG - chr3_2:4462163-4462182 Msa0391680:intron 50.0%
GTGGACCACCATCTATCTGT+AGG + chr3_2:4462643-4462662 None:intergenic 50.0%
! CAGGTCTTGCTGTCTTGATC+AGG - chr3_2:4462787-4462806 Msa0391680:intron 50.0%
CTCAGCCGAGTTTCAAACCT+TGG + chr3_2:4462994-4463013 None:intergenic 50.0%
CGCTCGGATCAACCACATGT+TGG + chr3_2:4462080-4462099 None:intergenic 55.0%
TGTGGTTGATCCGAGCGGTA+AGG - chr3_2:4462083-4462102 Msa0391680:CDS 55.0%
GTGGTTGATCCGAGCGGTAA+GGG - chr3_2:4462084-4462103 Msa0391680:CDS 55.0%
CGCTCGGATCAACCACATGT+TGG + chr3_2:4462080-4462099 None:intergenic 55.0%
TGTGGTTGATCCGAGCGGTA+AGG - chr3_2:4462083-4462102 Msa0391680:CDS 55.0%
GTGGTTGATCCGAGCGGTAA+GGG - chr3_2:4462084-4462103 Msa0391680:CDS 55.0%
GTTCGCCACACACTCCAACC+AGG + chr3_2:4462171-4462190 None:intergenic 60.0%
GTTCGCCACACACTCCAACC+AGG + chr3_2:4462171-4462190 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 4461067 4463355 4461067 ID=Msa0391680;Name=Msa0391680
chr3_2 mRNA 4461067 4463355 4461067 ID=Msa0391680-mRNA-1;Parent=Msa0391680;Name=Msa0391680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.75|0.6|0.8|0.75|0.8|5|483|301
chr3_2 exon 4461067 4461632 4461067 ID=Msa0391680-mRNA-1:exon:1070;Parent=Msa0391680-mRNA-1
chr3_2 exon 4461740 4462160 4461740 ID=Msa0391680-mRNA-1:exon:1069;Parent=Msa0391680-mRNA-1
chr3_2 exon 4462554 4462799 4462554 ID=Msa0391680-mRNA-1:exon:1068;Parent=Msa0391680-mRNA-1
chr3_2 exon 4462921 4463042 4462921 ID=Msa0391680-mRNA-1:exon:1067;Parent=Msa0391680-mRNA-1
chr3_2 exon 4463322 4463355 4463322 ID=Msa0391680-mRNA-1:exon:1066;Parent=Msa0391680-mRNA-1
chr3_2 CDS 4463322 4463355 4463322 ID=Msa0391680-mRNA-1:cds;Parent=Msa0391680-mRNA-1
chr3_2 CDS 4462921 4463042 4462921 ID=Msa0391680-mRNA-1:cds;Parent=Msa0391680-mRNA-1
chr3_2 CDS 4462554 4462799 4462554 ID=Msa0391680-mRNA-1:cds;Parent=Msa0391680-mRNA-1
chr3_2 CDS 4461740 4462160 4461740 ID=Msa0391680-mRNA-1:cds;Parent=Msa0391680-mRNA-1
chr3_2 CDS 4461550 4461632 4461550 ID=Msa0391680-mRNA-1:cds;Parent=Msa0391680-mRNA-1
chr3_2 three_prime_UTR 4461067 4461549 4461067 ID=Msa0391680-mRNA-1:three_prime_utr;Parent=Msa0391680-mRNA-1
Gene Sequence

>Msa0391680

TTGTTCGATGATCCATTCGATGCAATTAGAAAAAGAACTGTTCGTTTCAATCTCGATCCATTTAGTGAACACAGCGATGCTGATTTATGGGAAGCTTTGGAAAGGGCACACTTGAAAGATGTAATAAGAAGAAATTCTTTTGGTCTAGATGCTCAGGTTTCCGAGGGAGGAGACAATTTCAGTGTTGGACAAAGGCAGCTATTAAGTTTAGCTAGAGCATTGCTAAGAAGATCAAAGGTTCTTGTCCTTGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCTCTAATACAGAAAACTATCCGACAAGAATTTCATTCATGCACAATGCTCATCATTGCACACAGATTGAATACAATTATCGACTGCAACCGAATTCTGTTGCTAGATGCTGGCAAGGTTCTTGAATACAATTCACCTGAGAAACTCTTACAAAATGAAGAAACTGCATTCTACAAAATGGTTCAAAGTACCGGTCCTGCAAATGCCGAATATTTGTGCAGCTTAGTATTTGGAAGGAAAGAGAACAATTCAAATGAATATAGCAAGGAGTCGGAAAACCGTATGAGACAGTTAGCATCTACAAATTGGACTGCTGCTACTCAGTTTGCAATAGCTTCTACACTTTCTTCTTTACATCAACACCTTCAAAGTCCAAATACTAAAGATGACAAAGACATCCTTAATAGAACAAAGGATGCAGTAGTTACACTTCAGGAAGTTCTAGAAGGAAAGCATGATGAAACTATTGAAGAGACATTGACTCAATATCATGTTCCTACAGATAGATGGTGGTCCACTCTATATAAAGTTATTGAAGGTCTTGCTGTCTTGATCAGGTTACCTCAGGACAACAACTTTAACCAATTAGAACCTGATTTTGAAGGGAGATCTTTTGACTAA
Protein sequence

>Msa0391680

LFDDPFDAIRKRTVRFNLDPFSEHSDADLWEALERAHLKDVIRRNSFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFHSCTMLIIAHRLNTIIDCNRILLLDAGKVLEYNSPEKLLQNEETAFYKMVQSTGPANAEYLCSLVFGRKENNSNEYSKESENRMRQLASTNWTAATQFAIASTLSSLHQHLQSPNTKDDKDILNRTKDAVVTLQEVLEGKHDETIEETLTQYHVPTDRWWSTLYKVIEGLAVLIRLPQDNNFNQLEPDFEGRSFD*