AlfalfaGEDB | Msa0599770

M. sativa cultivar zhongmu-4 / Msa0599770

KEGG: K03327
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805
PFAM: PF01554.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599770	XP_003605914.1	89.788	519	9	3	1	475	1	519	0.0	904

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599770	sp\|Q9LVD9\|DTX40_ARATH	69.937	479	100	3	39	473	26	504	0.0	660

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0599770	0.816171	6.345285e-52	-8.615850e-47
Msa0011720	Msa0599770	0.827110	1.875164e-54	-8.615850e-47
Msa0015100	Msa0599770	0.884484	1.843313e-71	-8.615850e-47
Msa0021490	Msa0599770	0.808706	2.714792e-50	-8.615850e-47
Msa0039330	Msa0599770	0.822636	2.130566e-53	-8.615850e-47
Msa0040580	Msa0599770	0.810619	1.053462e-50	-8.615850e-47
Msa0042980	Msa0599770	-0.812022	5.225284e-51	-8.615850e-47
Msa0044710	Msa0599770	0.807375	5.212662e-50	-8.615850e-47
Msa0045780	Msa0599770	0.817041	4.049539e-52	-8.615850e-47
Msa0046150	Msa0599770	0.827151	1.832685e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599770	MtrunA17_Chr4g0024501	89.788	519	9	3	1	475	1	519	0.0	904
Msa0599770	MtrunA17_Chr2g0322671	73.541	514	78	5	8	475	6	507	0.0	724
Msa0599770	MtrunA17_Chr2g0288281	64.948	388	108	2	107	466	1	388	1.48e-180	510
Msa0599770	MtrunA17_Chr8g0368001	48.026	456	209	3	41	468	42	497	4.37e-145	425
Msa0599770	MtrunA17_Chr5g0412771	48.747	439	198	2	59	470	67	505	1.91e-137	405
Msa0599770	MtrunA17_Chr5g0412541	45.824	443	212	3	59	473	47	489	4.86e-132	390
Msa0599770	MtrunA17_Chr5g0442331	43.673	490	234	3	17	464	1	490	1.69e-131	390
Msa0599770	MtrunA17_Chr3g0132531	45.591	465	214	6	36	465	31	491	2.01e-127	379
Msa0599770	MtrunA17_Chr7g0254521	44.835	455	223	3	44	471	27	480	7.80e-127	377
Msa0599770	MtrunA17_Chr7g0254511	43.818	461	233	2	31	465	13	473	1.08e-125	374

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599770	AT3G21690.1	69.937	479	100	3	39	473	26	504	0.0	660
Msa0599770	AT1G61890.1	60.206	485	149	3	35	475	17	501	0.0	576
Msa0599770	AT1G11670.1	59.175	485	153	4	35	475	20	503	0.0	568
Msa0599770	AT1G61890.2	61.075	465	137	3	35	455	17	481	0.0	556
Msa0599770	AT4G21910.2	52.849	509	181	6	10	472	12	507	0.0	516
Msa0599770	AT4G21910.4	52.849	509	181	6	10	472	12	507	0.0	516
Msa0599770	AT4G21910.3	52.475	505	205	6	1	472	3	505	6.55e-179	511
Msa0599770	AT4G21910.1	52.475	505	205	6	1	472	3	505	6.55e-179	511
Msa0599770	AT1G61890.3	60.460	435	128	3	35	425	17	451	1.08e-178	509
Msa0599770	AT4G21903.1	55.745	470	163	4	43	468	31	499	3.13e-177	506

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Find 103 sgRNAs with CRISPR-Local

Find 946 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAGGCTAAACAAGT+GGG	0.629878	4_2:-39983988	Msa0599770:CDS
AAACCAAGAACTGCACCCAA+AGG	0.650080	4_2:+39984509	None:intergenic
AAACTAAACCCTTTCCAAGT+AGG	0.500764	4_2:+39997207	None:intergenic
AAAGGGGTGGCCGTTGGATG+TGG	0.455534	4_2:-39984587	Msa0599770:intron
AACATAACCAATAATAAAAG+AGG	0.497364	4_2:-39983758	Msa0599770:three_prime_UTR
AAGAGGCTAAACAAGTGGGA+GGG	0.661127	4_2:-39983984	Msa0599770:CDS
AAGTGTACGCCTACTTGGAA+AGG	0.522764	4_2:-39997216	Msa0599770:CDS
AATAATAAAAGAGGACTGAG+CGG	0.688422	4_2:-39983749	Msa0599770:three_prime_UTR
AATCTTTGCTTATGGACTCA+TGG	0.512650	4_2:-39998479	Msa0599770:intron
ACAATGGCAAGAGCAAGGAG+TGG	0.692279	4_2:+39988275	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAATGATGATAGTAGTAT+TGG	+	chr4_2:39983461-39983480	None:intergenic	30.0%
TCATCATTCACTCATTCATT+TGG	-	chr4_2:39983470-39983489	Msa0599770:three_prime_UTR	30.0%
TGTCTAATACGTTTCACAAA+AGG	+	chr4_2:39983551-39983570	None:intergenic	30.0%
TTGGATACCATTATTTCCAA+GGG	+	chr4_2:39983711-39983730	None:intergenic	30.0%
TTTGGATACCATTATTTCCA+AGG	+	chr4_2:39983712-39983731	None:intergenic	30.0%
TTCTTGCACTAATTTCCATA+AGG	+	chr4_2:39984124-39984143	None:intergenic	30.0%
GGAAATTAGTGCAAGAAAAT+TGG	-	chr4_2:39984127-39984146	Msa0599770:intron	30.0%
GCCATAAAGACTTATTTACA+GGG	-	chr4_2:39984149-39984168	Msa0599770:intron	30.0%
TCCCTGTAAATAAGTCTTTA+TGG	+	chr4_2:39984153-39984172	None:intergenic	30.0%
AATGTTCATGATGAAACAGT+TGG	-	chr4_2:39984524-39984543	Msa0599770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	39983392	39998839	39983392	ID=Msa0599770;Name=Msa0599770
chr4_2	mRNA	39983392	39998839	39983392	ID=Msa0599770-mRNA-1;Parent=Msa0599770;Name=Msa0599770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.66\|0.5\|1\|0.66\|0.5\|10\|564\|475
chr4_2	exon	39983392	39984021	39983392	ID=Msa0599770-mRNA-1:exon:8720;Parent=Msa0599770-mRNA-1
chr4_2	exon	39984322	39984408	39984322	ID=Msa0599770-mRNA-1:exon:8719;Parent=Msa0599770-mRNA-1
chr4_2	exon	39984487	39984605	39984487	ID=Msa0599770-mRNA-1:exon:8718;Parent=Msa0599770-mRNA-1
chr4_2	exon	39988246	39988484	39988246	ID=Msa0599770-mRNA-1:exon:8717;Parent=Msa0599770-mRNA-1
chr4_2	exon	39989746	39989802	39989746	ID=Msa0599770-mRNA-1:exon:8716;Parent=Msa0599770-mRNA-1
chr4_2	exon	39997057	39997244	39997057	ID=Msa0599770-mRNA-1:exon:8715;Parent=Msa0599770-mRNA-1
chr4_2	exon	39997275	39997522	39997275	ID=Msa0599770-mRNA-1:exon:8714;Parent=Msa0599770-mRNA-1
chr4_2	exon	39997577	39997688	39997577	ID=Msa0599770-mRNA-1:exon:8713;Parent=Msa0599770-mRNA-1
chr4_2	exon	39998480	39998622	39998480	ID=Msa0599770-mRNA-1:exon:8712;Parent=Msa0599770-mRNA-1
chr4_2	exon	39998671	39998839	39998671	ID=Msa0599770-mRNA-1:exon:8711;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39998671	39998839	39998671	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39998480	39998622	39998480	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39997577	39997688	39997577	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39997275	39997522	39997275	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39997057	39997244	39997057	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39989746	39989802	39989746	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39988246	39988484	39988246	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39984487	39984605	39984487	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39984322	39984408	39984322	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	CDS	39983956	39984021	39983956	ID=Msa0599770-mRNA-1:cds;Parent=Msa0599770-mRNA-1
chr4_2	three_prime_UTR	39983392	39983955	39983392	ID=Msa0599770-mRNA-1:three_prime_utr;Parent=Msa0599770-mRNA-1

Gene Sequence

>Msa0599770

ATGGCTACTTCTACTCATGTTCACAAAGATATTGATGAACCTTTGCTAGTACCAAGTGAACCAACACCAATACTACTATCATCATTCACTCATTCATTTGGTTCAAAGCATGAATCAGATGGTGAACTTGAACGAATACTCTCAGATACAAGTGTTCCTTTTGTGAAACCTGCACCTGCGGTAATTGTGTACCTTATCAATTATGTGATGTCAATGTCTACTCAAATATTTTCTGGTCATCTTGGTAATTTGGAGCTTGCTGCTGCTTCCCTTGGAAATAATGGTATCCAAATCTTTGCTTATGGACTCATGTTGGGCATGGGGAGTGCTGTTGAGACACTATGTGGACAAGCATTTGGTGCAAAAAAGTATGAAATGTTAGGCATATATTTGCAAAGATCAACAGTGCTTCTCACATTAGCCGGAGAATCACCAAAAATTGCATCAGCAGCATCACTTTTTGTCTTTGGTTTAATCCCACAAATATTTGCCTATGCTATAAACTTTCCAATCCAAAAATTTCTTCAAGCACAAAGCATAGTGGCACCAAGTGCATACATATCAGCAGCAACATTGGTTATTCATCTTGTATTAAGTTATGTTGTTATCTACCAAATTGGGCTTGGTTTATTAGGTGCTTCATTGGTTTTAAGTATTTCTTGGTGGATAATTAGTGAAAAGTGTACGCCTACTTGGAAAGGGTTTAGTTTTCAAGCTTTTTCAGGGTTGCCAGAGTTTTTTAAATTGTCAGCTGCATCAGCTGTGATGTTGTGTTTAGAGACTTGGTACTTTCAAATCTTGGTTTTGCTTGCTGGCTTACTTCCTCATCCTGAATTGGCTCTTGATTCTCTTTCTATTTGTACCACAGTGTCTGGATGGACGTTCATGATCTCAGTTGGATTTCAAGCAGCTGCAAGTGTGAGAGTGAGCAATGAATTAGGAGCAGGAAATTCAAAATCAGCCTCATTTTCAGTGGTGGTGGTAACAGTGATTTCATTCATAATATGTGCTATTATAGCACTTGTGGTGCTTGCATTAAGGGATGTTATCAGCTATGTCTTCACAGACGGTGAAGAGGTTGCTGCTGCTGTCTCAGATCTCAGTCCACTCCTTGCTCTTGCCATTGTCCTAAATGGTGTTCAACCTGTCTTATCTGGGGTGGCCGTTGGATGTGGATGGCAAACATTTGTTGCGTATGTAAACGTTGGTTGTTATTACGGGATTGGCATACCTTTGGGTGCAGTTCTTGGTTTCTATTTCAAATTTGGTGCCAAGGGAATATGGTTGGGAATGTTAGGTGGCACGGTTTTGCAAACAATTATTTTATTGTGGGTAACATTTCGAACGGATTGGAATAATGAGGTTGTAGAATCAAACAAGAGGCTAAACAAGTGGGAGGGCAAGACCGAGTCACTCCTCAAGAATTGA

Protein sequence

>Msa0599770

MATSTHVHKDIDEPLLVPSEPTPILLSSFTHSFGSKHESDGELERILSDTSVPFVKPAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNNGIQIFAYGLMLGMGSAVETLCGQAFGAKKYEMLGIYLQRSTVLLTLAGESPKIASAASLFVFGLIPQIFAYAINFPIQKFLQAQSIVAPSAYISAATLVIHLVLSYVVIYQIGLGLLGASLVLSISWWIISEKCTPTWKGFSFQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWTFMISVGFQAAASVRVSNELGAGNSKSASFSVVVVTVISFIICAIIALVVLALRDVISYVFTDGEEVAAAVSDLSPLLALAIVLNGVQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGAVLGFYFKFGAKGIWLGMLGGTVLQTIILLWVTFRTDWNNEVVESNKRLNKWEGKTESLLKN*