AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392830 MtrunA17_Chr3g0078241 96.667 330 11 0 1 330 140 469 0.0 657
Msa0392830 MtrunA17_Chr2g0303951 50.153 327 149 8 12 329 148 469 2.21e-97 296
Msa0392830 MtrunA17_Chr3g0122541 58.537 205 77 4 127 326 247 448 1.23e-62 206
Msa0392830 MtrunA17_Chr5g0419741 52.486 181 85 1 146 325 114 294 2.45e-58 190
Msa0392830 MtrunA17_Chr3g0122521 58.960 173 67 3 155 326 18 187 3.84e-55 179
Msa0392830 MtrunA17_Chr2g0284551 42.857 175 96 3 145 318 98 269 4.37e-30 115
Msa0392830 MtrunA17_Chr3g0113611 34.123 211 116 6 138 326 53 262 6.10e-23 96.3
Msa0392830 MtrunA17_Chr5g0437111 38.144 194 97 6 155 326 96 288 3.03e-22 95.1
Msa0392830 MtrunA17_Chr5g0446321 34.426 183 96 6 143 321 181 343 1.10e-19 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392830 AT5G46410.2 59.447 217 80 5 116 329 245 456 2.45e-78 246
Msa0392830 AT5G46410.3 59.447 217 80 5 116 329 242 453 2.54e-78 246
Msa0392830 AT5G46410.1 59.447 217 80 5 116 329 242 453 2.54e-78 246
Msa0392830 AT4G18140.4 57.399 223 90 5 111 329 220 441 8.85e-78 244
Msa0392830 AT4G18140.6 57.399 223 90 5 111 329 220 441 8.85e-78 244
Msa0392830 AT4G18140.5 57.399 223 90 5 111 329 220 441 8.85e-78 244
Msa0392830 AT4G18140.1 57.014 221 90 5 111 327 220 439 2.44e-76 241
Msa0392830 AT4G18140.2 57.014 221 90 5 111 327 220 439 2.44e-76 241
Msa0392830 AT4G18140.3 57.273 220 89 5 111 326 220 438 3.06e-76 241
Msa0392830 AT5G11860.3 61.202 183 69 2 144 325 99 280 2.60e-73 229
Msa0392830 AT5G11860.5 61.202 183 69 2 144 325 99 280 2.60e-73 229
Msa0392830 AT5G11860.1 61.202 183 69 2 144 325 99 280 2.60e-73 229
Msa0392830 AT5G11860.4 61.202 183 69 2 144 325 99 280 2.60e-73 229
Msa0392830 AT5G11860.2 61.202 183 69 2 144 325 99 280 2.60e-73 229
Msa0392830 AT1G29780.1 40.698 172 99 3 158 327 51 221 5.32e-36 130
Msa0392830 AT1G29770.1 39.785 186 105 5 146 328 95 276 5.80e-32 120
Msa0392830 AT5G45700.1 41.667 168 96 2 158 323 99 266 6.94e-32 120
Msa0392830 AT3G55960.1 37.186 199 98 9 152 326 93 288 3.75e-22 95.1
Msa0392830 AT1G55900.2 31.638 177 101 5 155 328 188 347 1.16e-16 80.5
Msa0392830 AT1G55900.1 31.638 177 101 5 155 328 188 347 1.37e-16 80.1
Msa0392830 AT1G43610.1 28.947 190 97 5 151 309 47 229 1.16e-15 75.9
Msa0392830 AT5G54210.1 27.619 210 117 7 99 292 41 231 1.98e-14 73.2
Msa0392830 AT1G43600.1 29.121 182 91 5 159 309 21 195 2.09e-14 71.6
Msa0392830 AT1G20320.1 31.646 158 83 6 155 297 75 222 7.53e-12 65.9
Msa0392830 AT3G17550.1 30.000 150 86 4 155 292 84 226 1.32e-11 64.7

Find 79 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCTTTACTTCCCTTTC+TGG 0.097640 3_2:+6237429 Msa0392830:CDS
ATATCAGGTATTTCGAAATT+TGG 0.119769 3_2:-6236069 None:intergenic
ACCAAAGATTTGACAGTTCT+TGG 0.197757 3_2:+6236932 Msa0392830:CDS
CGAGATATTCATAAGCTTCT+TGG 0.230999 3_2:+6236410 Msa0392830:CDS
ACAGAGGCTGTGTTAATTAA+TGG 0.241927 3_2:+6237778 Msa0392830:three_prime_UTR
TTCAGAAATAGCTATGATTC+TGG 0.252842 3_2:+6237651 Msa0392830:three_prime_UTR
AGGATCCTGTGAAGAGTTTC+AGG 0.253011 3_2:+6236269 Msa0392830:CDS
TTTGGTCTCTGCAGTTAATA+AGG 0.260231 3_2:+6236002 Msa0392830:intron
TCAAATTTCTCTGCGATAAT+CGG 0.313863 3_2:-6237481 None:intergenic
TGTTACCCTTGTTCTTGATT+TGG 0.319591 3_2:+6236497 Msa0392830:CDS
TGTACAATAGTGAAAATAAT+AGG 0.328586 3_2:-6235953 None:intergenic
ACACTGTCTATGTGCGAAAA+AGG 0.330339 3_2:+6236738 Msa0392830:CDS
TACTCCTTGTCAAGTAAAAC+TGG 0.332299 3_2:-6236716 None:intergenic
GGAAGATCGTATAACAAATT+TGG 0.344441 3_2:-6236201 None:intergenic
TCCAAGAACTGTCAAATCTT+TGG 0.348444 3_2:-6236933 None:intergenic
TAAGCAAGGAGACAAGTAAA+AGG 0.380226 3_2:+6236469 Msa0392830:CDS
TATGTGGATGAAGCATTCTT+CGG 0.396115 3_2:+6236102 Msa0392830:CDS
ACATAGTAGTCTAACATATC+AGG 0.399328 3_2:-6236084 None:intergenic
ATGTGGATGAAGCATTCTTC+GGG 0.403727 3_2:+6236103 Msa0392830:CDS
TCAGAAATAGCTATGATTCT+GGG 0.405810 3_2:+6237652 Msa0392830:three_prime_UTR
CAGAGGCTGTGTTAATTAAT+GGG 0.406909 3_2:+6237779 Msa0392830:three_prime_UTR
TCATCAAACCAACTCTCAAT+AGG 0.412269 3_2:-6237388 None:intergenic
ATGCTTTCGTCAAGGGTACT+AGG 0.416784 3_2:-6236222 None:intergenic
AGCCAATGCCTGATTCTTCA+TGG 0.422624 3_2:+6236292 Msa0392830:CDS
GTTCAATGTCATTTGCCATC+AGG 0.445330 3_2:+6236314 Msa0392830:CDS
AGCAAATTCAAGATCGGAAA+AGG 0.445909 3_2:-6236175 None:intergenic
CTGAGGAGAGTTGTCTACTA+TGG 0.448136 3_2:-6236975 None:intergenic
CAAGAAGCTTATGAATATCT+CGG 0.458923 3_2:-6236409 None:intergenic
TGCTTCTATGCTTTCGTCAA+GGG 0.461989 3_2:-6236229 None:intergenic
GCATCATGTTCTTCAGTAAG+TGG 0.473251 3_2:-6236342 None:intergenic
CTTCACAGGATCCTACATAT+TGG 0.474904 3_2:-6236260 None:intergenic
CTGCTTCTATGCTTTCGTCA+AGG 0.478495 3_2:-6236230 None:intergenic
TACTAGAGCTGGCAATGAGT+TGG 0.481285 3_2:-6236448 None:intergenic
CAGTAAGTGGCTTGGCCTGA+TGG 0.481696 3_2:-6236329 None:intergenic
GTCTCCTTGCTTACTAGAGC+TGG 0.484300 3_2:-6236459 None:intergenic
CTATGAAGGGAGAGGAGGTC+CGG 0.487928 3_2:-6237533 None:intergenic
CTGTCATCCGCTCGATCAGG+TGG 0.487999 3_2:-6236039 None:intergenic
ACCCTTGTTCTTGATTTGGA+TGG 0.489792 3_2:+6236501 Msa0392830:CDS
TTACTGTCATCCGCTCGATC+AGG 0.495088 3_2:-6236042 None:intergenic
TCAGACTGCAAGTTAACAAT+GGG 0.500724 3_2:+6237362 Msa0392830:CDS
TCAACGAGTTTCTCCAGAAA+GGG 0.501744 3_2:-6237442 None:intergenic
ATAATCGACTAATTCTATGA+AGG 0.502725 3_2:-6237547 None:intergenic
ACATTGAACCATGAAGAATC+AGG 0.505703 3_2:-6236300 None:intergenic
TAGGAAACAATTATACTACT+TGG 0.516458 3_2:-6235934 None:intergenic
GATATTCATAAGCTTCTTGG+AGG 0.517387 3_2:+6236413 Msa0392830:CDS
TAGTCGAGACCATCATCAAA+TGG 0.518538 3_2:-6236147 None:intergenic
AGAATCAAGCTGACATGACC+TGG 0.521297 3_2:-6236364 None:intergenic
AATGTGCAAGACAACTAGGC+AGG 0.526575 3_2:-6237607 None:intergenic
ATGGGATTCCTATTGAGAGT+TGG 0.527202 3_2:+6237380 Msa0392830:CDS
CTTGATAGATGCACGAATCT+CGG 0.530294 3_2:-6236898 None:intergenic
CATAGTAGACAACTCTCCTC+AGG 0.530342 3_2:+6236976 Msa0392830:CDS
ATGTTCTTCAGTAAGTGGCT+TGG 0.530771 3_2:-6236337 None:intergenic
GAAATCAAAGCAGAATCAGA+TGG 0.530841 3_2:-6237412 None:intergenic
AACCATGAAGAATCAGGCAT+TGG 0.542330 3_2:-6236294 None:intergenic
TGGTCCAGCAAATTCAAGAT+CGG 0.545038 3_2:-6236181 None:intergenic
TAATCGACTAATTCTATGAA+GGG 0.547350 3_2:-6237546 None:intergenic
ATCAACGAGTTTCTCCAGAA+AGG 0.548402 3_2:-6237443 None:intergenic
AAGAAGCTTATGAATATCTC+GGG 0.551192 3_2:-6236408 None:intergenic
CTAAAATGTGCAAGACAACT+AGG 0.557100 3_2:-6237611 None:intergenic
GCAGCAAGCTACCAATATGT+AGG 0.557348 3_2:+6236249 Msa0392830:CDS
TGGCTCCTGAAACTCTTCAC+AGG 0.559633 3_2:-6236274 None:intergenic
GGGATCAATCCATTTGATGA+TGG 0.567091 3_2:+6236138 Msa0392830:CDS
GACTAATTCTATGAAGGGAG+AGG 0.570595 3_2:-6237541 None:intergenic
TACCATCCAAATCAAGAACA+AGG 0.575097 3_2:-6236503 None:intergenic
TCTGGAGAAACTCGTTGATG+TGG 0.587394 3_2:+6237447 Msa0392830:CDS
CAGAAATAGCTATGATTCTG+GGG 0.589495 3_2:+6237653 Msa0392830:three_prime_UTR
TTCAGACTGCAAGTTAACAA+TGG 0.590311 3_2:+6237361 Msa0392830:CDS
ATTGCCAGCTCTAGTAAGCA+AGG 0.597516 3_2:+6236455 Msa0392830:CDS
ATGTGCAAGACAACTAGGCA+GGG 0.600660 3_2:-6237606 None:intergenic
GACTAACCCACCTGATCGAG+CGG 0.602487 3_2:+6236032 Msa0392830:CDS
GATTCGTGCATCTATCAAGA+TGG 0.603464 3_2:+6236902 Msa0392830:CDS
CATATTGCGCCATTGTAGAG+TGG 0.608045 3_2:-6236670 None:intergenic
TTACTGAAGAACATGATGCC+AGG 0.616908 3_2:+6236346 Msa0392830:CDS
AACACTGATCCACTCTACAA+TGG 0.642575 3_2:+6236661 Msa0392830:CDS
TAATTCTATGAAGGGAGAGG+AGG 0.643341 3_2:-6237538 None:intergenic
TGATATGTTAGACTACTATG+TGG 0.652262 3_2:+6236086 Msa0392830:CDS
ACCATCCAAATCAAGAACAA+GGG 0.657637 3_2:-6236502 None:intergenic
TGTCATCCGCTCGATCAGGT+GGG 0.666821 3_2:-6236038 None:intergenic
CTTACTGAACTACAGTACAG+AGG 0.727146 3_2:+6237762 Msa0392830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAATTATTTTATACATTT+TGG - chr3_2:6236623-6236642 None:intergenic 10.0%
!! ATTATATCTTAATACATATT+TGG + chr3_2:6237074-6237093 Msa0392830:intron 10.0%
!!! AATAATTTTATTTCAAGTTT+TGG + chr3_2:6237716-6237735 Msa0392830:three_prime_UTR 10.0%
!!! CAAAATTATTTTATACATTT+TGG - chr3_2:6236623-6236642 None:intergenic 10.0%
!! ATTATATCTTAATACATATT+TGG + chr3_2:6237074-6237093 Msa0392830:intron 10.0%
!!! AATAATTTTATTTCAAGTTT+TGG + chr3_2:6237716-6237735 Msa0392830:three_prime_UTR 10.0%
!! ATTTCAATATTATTTACCAT+AGG - chr3_2:6237315-6237334 None:intergenic 15.0%
!! ATTTCAATATTATTTACCAT+AGG - chr3_2:6237315-6237334 None:intergenic 15.0%
!! TGTACAATAGTGAAAATAAT+AGG - chr3_2:6235956-6235975 None:intergenic 20.0%
!! TTATAACGATAAAAACACAT+CGG - chr3_2:6236550-6236569 None:intergenic 20.0%
!!! TTATACATTTTGGAATAAGA+AGG - chr3_2:6236613-6236632 None:intergenic 20.0%
!!! AGATATAATGCCAAATATTT+TGG - chr3_2:6237063-6237082 None:intergenic 20.0%
!! GCATAATATAAATGTATCAT+TGG + chr3_2:6237198-6237217 Msa0392830:intron 20.0%
!!! AATTAGTTTTGCATATATTC+CGG + chr3_2:6237514-6237533 Msa0392830:exon 20.0%
!! TGTACAATAGTGAAAATAAT+AGG - chr3_2:6235956-6235975 None:intergenic 20.0%
!! TTATAACGATAAAAACACAT+CGG - chr3_2:6236550-6236569 None:intergenic 20.0%
!!! TTATACATTTTGGAATAAGA+AGG - chr3_2:6236613-6236632 None:intergenic 20.0%
!!! AGATATAATGCCAAATATTT+TGG - chr3_2:6237063-6237082 None:intergenic 20.0%
!! GCATAATATAAATGTATCAT+TGG + chr3_2:6237198-6237217 Msa0392830:intron 20.0%
!!! AATTAGTTTTGCATATATTC+CGG + chr3_2:6237514-6237533 Msa0392830:exon 20.0%
! TAGGAAACAATTATACTACT+TGG - chr3_2:6235937-6235956 None:intergenic 25.0%
! ATATCAGGTATTTCGAAATT+TGG - chr3_2:6236072-6236091 None:intergenic 25.0%
! AGCAAGTAAAAAGATTTATG+CGG + chr3_2:6236820-6236839 Msa0392830:CDS 25.0%
! AACCTATTATAACATGAAGA+CGG - chr3_2:6237010-6237029 None:intergenic 25.0%
! CATTCATGATCCAAAATATT+TGG + chr3_2:6237050-6237069 Msa0392830:intron 25.0%
! GAAAATTAGTCATCTAAATG+AGG - chr3_2:6237144-6237163 None:intergenic 25.0%
! TCATAATGTAAATGCATCAT+TGG + chr3_2:6237243-6237262 Msa0392830:intron 25.0%
!! ATAGTCCTTTTATATTTGTC+TGG + chr3_2:6237275-6237294 Msa0392830:intron 25.0%
! TTACCATAGGCAATAAATAA+AGG - chr3_2:6237302-6237321 None:intergenic 25.0%
! TAATCGACTAATTCTATGAA+GGG - chr3_2:6237549-6237568 None:intergenic 25.0%
! ATAATCGACTAATTCTATGA+AGG - chr3_2:6237550-6237569 None:intergenic 25.0%
! TAGGAAACAATTATACTACT+TGG - chr3_2:6235937-6235956 None:intergenic 25.0%
! ATATCAGGTATTTCGAAATT+TGG - chr3_2:6236072-6236091 None:intergenic 25.0%
! AGCAAGTAAAAAGATTTATG+CGG + chr3_2:6236820-6236839 Msa0392830:CDS 25.0%
! AACCTATTATAACATGAAGA+CGG - chr3_2:6237010-6237029 None:intergenic 25.0%
! CATTCATGATCCAAAATATT+TGG + chr3_2:6237050-6237069 Msa0392830:intron 25.0%
! GAAAATTAGTCATCTAAATG+AGG - chr3_2:6237144-6237163 None:intergenic 25.0%
! TCATAATGTAAATGCATCAT+TGG + chr3_2:6237243-6237262 Msa0392830:intron 25.0%
!! ATAGTCCTTTTATATTTGTC+TGG + chr3_2:6237275-6237294 Msa0392830:intron 25.0%
! TTACCATAGGCAATAAATAA+AGG - chr3_2:6237302-6237321 None:intergenic 25.0%
! TAATCGACTAATTCTATGAA+GGG - chr3_2:6237549-6237568 None:intergenic 25.0%
! ATAATCGACTAATTCTATGA+AGG - chr3_2:6237550-6237569 None:intergenic 25.0%
TGTAACAAGTGTGTAAACTT+TGG + chr3_2:6235984-6236003 Msa0392830:intron 30.0%
ACATAGTAGTCTAACATATC+AGG - chr3_2:6236087-6236106 None:intergenic 30.0%
TGATATGTTAGACTACTATG+TGG + chr3_2:6236086-6236105 Msa0392830:CDS 30.0%
GGAAGATCGTATAACAAATT+TGG - chr3_2:6236204-6236223 None:intergenic 30.0%
AAGAAGCTTATGAATATCTC+GGG - chr3_2:6236411-6236430 None:intergenic 30.0%
CAAGAAGCTTATGAATATCT+CGG - chr3_2:6236412-6236431 None:intergenic 30.0%
! AATTCCAGTTTTACTTGACA+AGG + chr3_2:6236712-6236731 Msa0392830:CDS 30.0%
! CGAGAAAAAAATTTTCTGTC+AGG - chr3_2:6236869-6236888 None:intergenic 30.0%
TAAAATCGCGAATGATGTAT+AGG - chr3_2:6237176-6237195 None:intergenic 30.0%
GCATTTACATTATGATGTGA+AGG - chr3_2:6237238-6237257 None:intergenic 30.0%
AAGGACCAGACAAATATAAA+AGG - chr3_2:6237283-6237302 None:intergenic 30.0%
TCAAACTTCTGTTCATGTTT+AGG + chr3_2:6237336-6237355 Msa0392830:intron 30.0%
TCAAATTTCTCTGCGATAAT+CGG - chr3_2:6237484-6237503 None:intergenic 30.0%
TTCAGAAATAGCTATGATTC+TGG + chr3_2:6237651-6237670 Msa0392830:three_prime_UTR 30.0%
TCAGAAATAGCTATGATTCT+GGG + chr3_2:6237652-6237671 Msa0392830:three_prime_UTR 30.0%
TGTAACAAGTGTGTAAACTT+TGG + chr3_2:6235984-6236003 Msa0392830:intron 30.0%
ACATAGTAGTCTAACATATC+AGG - chr3_2:6236087-6236106 None:intergenic 30.0%
TGATATGTTAGACTACTATG+TGG + chr3_2:6236086-6236105 Msa0392830:CDS 30.0%
GGAAGATCGTATAACAAATT+TGG - chr3_2:6236204-6236223 None:intergenic 30.0%
AAGAAGCTTATGAATATCTC+GGG - chr3_2:6236411-6236430 None:intergenic 30.0%
CAAGAAGCTTATGAATATCT+CGG - chr3_2:6236412-6236431 None:intergenic 30.0%
! AATTCCAGTTTTACTTGACA+AGG + chr3_2:6236712-6236731 Msa0392830:CDS 30.0%
! CGAGAAAAAAATTTTCTGTC+AGG - chr3_2:6236869-6236888 None:intergenic 30.0%
TAAAATCGCGAATGATGTAT+AGG - chr3_2:6237176-6237195 None:intergenic 30.0%
GCATTTACATTATGATGTGA+AGG - chr3_2:6237238-6237257 None:intergenic 30.0%
AAGGACCAGACAAATATAAA+AGG - chr3_2:6237283-6237302 None:intergenic 30.0%
TCAAACTTCTGTTCATGTTT+AGG + chr3_2:6237336-6237355 Msa0392830:intron 30.0%
TCAAATTTCTCTGCGATAAT+CGG - chr3_2:6237484-6237503 None:intergenic 30.0%
TTCAGAAATAGCTATGATTC+TGG + chr3_2:6237651-6237670 Msa0392830:three_prime_UTR 30.0%
TCAGAAATAGCTATGATTCT+GGG + chr3_2:6237652-6237671 Msa0392830:three_prime_UTR 30.0%
TTTGGTCTCTGCAGTTAATA+AGG + chr3_2:6236002-6236021 Msa0392830:intron 35.0%
! TATGTGGATGAAGCATTCTT+CGG + chr3_2:6236102-6236121 Msa0392830:CDS 35.0%
AGCAAATTCAAGATCGGAAA+AGG - chr3_2:6236178-6236197 None:intergenic 35.0%
! TTTTCCGATCTTGAATTTGC+TGG + chr3_2:6236177-6236196 Msa0392830:CDS 35.0%
ACATTGAACCATGAAGAATC+AGG - chr3_2:6236303-6236322 None:intergenic 35.0%
CGAGATATTCATAAGCTTCT+TGG + chr3_2:6236410-6236429 Msa0392830:CDS 35.0%
GATATTCATAAGCTTCTTGG+AGG + chr3_2:6236413-6236432 Msa0392830:CDS 35.0%
TAAGCAAGGAGACAAGTAAA+AGG + chr3_2:6236469-6236488 Msa0392830:CDS 35.0%
TGTTACCCTTGTTCTTGATT+TGG + chr3_2:6236497-6236516 Msa0392830:CDS 35.0%
ACCATCCAAATCAAGAACAA+GGG - chr3_2:6236505-6236524 None:intergenic 35.0%
TACCATCCAAATCAAGAACA+AGG - chr3_2:6236506-6236525 None:intergenic 35.0%
TACTCCTTGTCAAGTAAAAC+TGG - chr3_2:6236719-6236738 None:intergenic 35.0%
ACCAAAGATTTGACAGTTCT+TGG + chr3_2:6236932-6236951 Msa0392830:CDS 35.0%
TCCAAGAACTGTCAAATCTT+TGG - chr3_2:6236936-6236955 None:intergenic 35.0%
CTATTATAACATGAAGACGG+AGG - chr3_2:6237007-6237026 None:intergenic 35.0%
CTCCGTCTTCATGTTATAAT+AGG + chr3_2:6237005-6237024 Msa0392830:intron 35.0%
! GGTCCTTTATTTATTGCCTA+TGG + chr3_2:6237296-6237315 Msa0392830:intron 35.0%
TTCAGACTGCAAGTTAACAA+TGG + chr3_2:6237361-6237380 Msa0392830:CDS 35.0%
TCAGACTGCAAGTTAACAAT+GGG + chr3_2:6237362-6237381 Msa0392830:CDS 35.0%
TCATCAAACCAACTCTCAAT+AGG - chr3_2:6237391-6237410 None:intergenic 35.0%
GAAATCAAAGCAGAATCAGA+TGG - chr3_2:6237415-6237434 None:intergenic 35.0%
GATTTCTTTACTTCCCTTTC+TGG + chr3_2:6237429-6237448 Msa0392830:CDS 35.0%
CTAAAATGTGCAAGACAACT+AGG - chr3_2:6237614-6237633 None:intergenic 35.0%
CAGAAATAGCTATGATTCTG+GGG + chr3_2:6237653-6237672 Msa0392830:three_prime_UTR 35.0%
ACAGAGGCTGTGTTAATTAA+TGG + chr3_2:6237778-6237797 Msa0392830:three_prime_UTR 35.0%
CAGAGGCTGTGTTAATTAAT+GGG + chr3_2:6237779-6237798 Msa0392830:three_prime_UTR 35.0%
TTTGGTCTCTGCAGTTAATA+AGG + chr3_2:6236002-6236021 Msa0392830:intron 35.0%
! TATGTGGATGAAGCATTCTT+CGG + chr3_2:6236102-6236121 Msa0392830:CDS 35.0%
AGCAAATTCAAGATCGGAAA+AGG - chr3_2:6236178-6236197 None:intergenic 35.0%
! TTTTCCGATCTTGAATTTGC+TGG + chr3_2:6236177-6236196 Msa0392830:CDS 35.0%
ACATTGAACCATGAAGAATC+AGG - chr3_2:6236303-6236322 None:intergenic 35.0%
CGAGATATTCATAAGCTTCT+TGG + chr3_2:6236410-6236429 Msa0392830:CDS 35.0%
GATATTCATAAGCTTCTTGG+AGG + chr3_2:6236413-6236432 Msa0392830:CDS 35.0%
TAAGCAAGGAGACAAGTAAA+AGG + chr3_2:6236469-6236488 Msa0392830:CDS 35.0%
TGTTACCCTTGTTCTTGATT+TGG + chr3_2:6236497-6236516 Msa0392830:CDS 35.0%
ACCATCCAAATCAAGAACAA+GGG - chr3_2:6236505-6236524 None:intergenic 35.0%
TACCATCCAAATCAAGAACA+AGG - chr3_2:6236506-6236525 None:intergenic 35.0%
TACTCCTTGTCAAGTAAAAC+TGG - chr3_2:6236719-6236738 None:intergenic 35.0%
ACCAAAGATTTGACAGTTCT+TGG + chr3_2:6236932-6236951 Msa0392830:CDS 35.0%
TCCAAGAACTGTCAAATCTT+TGG - chr3_2:6236936-6236955 None:intergenic 35.0%
CTATTATAACATGAAGACGG+AGG - chr3_2:6237007-6237026 None:intergenic 35.0%
CTCCGTCTTCATGTTATAAT+AGG + chr3_2:6237005-6237024 Msa0392830:intron 35.0%
! GGTCCTTTATTTATTGCCTA+TGG + chr3_2:6237296-6237315 Msa0392830:intron 35.0%
TTCAGACTGCAAGTTAACAA+TGG + chr3_2:6237361-6237380 Msa0392830:CDS 35.0%
TCAGACTGCAAGTTAACAAT+GGG + chr3_2:6237362-6237381 Msa0392830:CDS 35.0%
TCATCAAACCAACTCTCAAT+AGG - chr3_2:6237391-6237410 None:intergenic 35.0%
GAAATCAAAGCAGAATCAGA+TGG - chr3_2:6237415-6237434 None:intergenic 35.0%
GATTTCTTTACTTCCCTTTC+TGG + chr3_2:6237429-6237448 Msa0392830:CDS 35.0%
CTAAAATGTGCAAGACAACT+AGG - chr3_2:6237614-6237633 None:intergenic 35.0%
CAGAAATAGCTATGATTCTG+GGG + chr3_2:6237653-6237672 Msa0392830:three_prime_UTR 35.0%
ACAGAGGCTGTGTTAATTAA+TGG + chr3_2:6237778-6237797 Msa0392830:three_prime_UTR 35.0%
CAGAGGCTGTGTTAATTAAT+GGG + chr3_2:6237779-6237798 Msa0392830:three_prime_UTR 35.0%
! ATGTGGATGAAGCATTCTTC+GGG + chr3_2:6236103-6236122 Msa0392830:CDS 40.0%
!! TTCTTCGGGTTTTCTAGTGA+CGG + chr3_2:6236117-6236136 Msa0392830:CDS 40.0%
GGGATCAATCCATTTGATGA+TGG + chr3_2:6236138-6236157 Msa0392830:CDS 40.0%
TAGTCGAGACCATCATCAAA+TGG - chr3_2:6236150-6236169 None:intergenic 40.0%
TGGTCCAGCAAATTCAAGAT+CGG - chr3_2:6236184-6236203 None:intergenic 40.0%
TGCTTCTATGCTTTCGTCAA+GGG - chr3_2:6236232-6236251 None:intergenic 40.0%
CTTCACAGGATCCTACATAT+TGG - chr3_2:6236263-6236282 None:intergenic 40.0%
AACCATGAAGAATCAGGCAT+TGG - chr3_2:6236297-6236316 None:intergenic 40.0%
! GTTCAATGTCATTTGCCATC+AGG + chr3_2:6236314-6236333 Msa0392830:CDS 40.0%
ATGTTCTTCAGTAAGTGGCT+TGG - chr3_2:6236340-6236359 None:intergenic 40.0%
GCATCATGTTCTTCAGTAAG+TGG - chr3_2:6236345-6236364 None:intergenic 40.0%
TTACTGAAGAACATGATGCC+AGG + chr3_2:6236346-6236365 Msa0392830:CDS 40.0%
!! ACCCTTGTTCTTGATTTGGA+TGG + chr3_2:6236501-6236520 Msa0392830:CDS 40.0%
AACACTGATCCACTCTACAA+TGG + chr3_2:6236661-6236680 Msa0392830:CDS 40.0%
ACACTGTCTATGTGCGAAAA+AGG + chr3_2:6236738-6236757 Msa0392830:CDS 40.0%
ATACTCTCTCCAAAAACTCG+TGG - chr3_2:6236772-6236791 None:intergenic 40.0%
CTTGATAGATGCACGAATCT+CGG - chr3_2:6236901-6236920 None:intergenic 40.0%
GATTCGTGCATCTATCAAGA+TGG + chr3_2:6236902-6236921 Msa0392830:CDS 40.0%
!!! CTACTATGGCTACTTTTGCT+AGG - chr3_2:6236964-6236983 None:intergenic 40.0%
GTCATCTAAATGAGGCATGT+TGG - chr3_2:6237136-6237155 None:intergenic 40.0%
ATGGGATTCCTATTGAGAGT+TGG + chr3_2:6237380-6237399 Msa0392830:CDS 40.0%
TCAACGAGTTTCTCCAGAAA+GGG - chr3_2:6237445-6237464 None:intergenic 40.0%
ATCAACGAGTTTCTCCAGAA+AGG - chr3_2:6237446-6237465 None:intergenic 40.0%
TAATTCTATGAAGGGAGAGG+AGG - chr3_2:6237541-6237560 None:intergenic 40.0%
GACTAATTCTATGAAGGGAG+AGG - chr3_2:6237544-6237563 None:intergenic 40.0%
CTTACTGAACTACAGTACAG+AGG + chr3_2:6237762-6237781 Msa0392830:three_prime_UTR 40.0%
! ATGTGGATGAAGCATTCTTC+GGG + chr3_2:6236103-6236122 Msa0392830:CDS 40.0%
!! TTCTTCGGGTTTTCTAGTGA+CGG + chr3_2:6236117-6236136 Msa0392830:CDS 40.0%
GGGATCAATCCATTTGATGA+TGG + chr3_2:6236138-6236157 Msa0392830:CDS 40.0%
TAGTCGAGACCATCATCAAA+TGG - chr3_2:6236150-6236169 None:intergenic 40.0%
TGGTCCAGCAAATTCAAGAT+CGG - chr3_2:6236184-6236203 None:intergenic 40.0%
TGCTTCTATGCTTTCGTCAA+GGG - chr3_2:6236232-6236251 None:intergenic 40.0%
CTTCACAGGATCCTACATAT+TGG - chr3_2:6236263-6236282 None:intergenic 40.0%
AACCATGAAGAATCAGGCAT+TGG - chr3_2:6236297-6236316 None:intergenic 40.0%
! GTTCAATGTCATTTGCCATC+AGG + chr3_2:6236314-6236333 Msa0392830:CDS 40.0%
ATGTTCTTCAGTAAGTGGCT+TGG - chr3_2:6236340-6236359 None:intergenic 40.0%
GCATCATGTTCTTCAGTAAG+TGG - chr3_2:6236345-6236364 None:intergenic 40.0%
TTACTGAAGAACATGATGCC+AGG + chr3_2:6236346-6236365 Msa0392830:CDS 40.0%
!! ACCCTTGTTCTTGATTTGGA+TGG + chr3_2:6236501-6236520 Msa0392830:CDS 40.0%
AACACTGATCCACTCTACAA+TGG + chr3_2:6236661-6236680 Msa0392830:CDS 40.0%
ACACTGTCTATGTGCGAAAA+AGG + chr3_2:6236738-6236757 Msa0392830:CDS 40.0%
ATACTCTCTCCAAAAACTCG+TGG - chr3_2:6236772-6236791 None:intergenic 40.0%
CTTGATAGATGCACGAATCT+CGG - chr3_2:6236901-6236920 None:intergenic 40.0%
GATTCGTGCATCTATCAAGA+TGG + chr3_2:6236902-6236921 Msa0392830:CDS 40.0%
!!! CTACTATGGCTACTTTTGCT+AGG - chr3_2:6236964-6236983 None:intergenic 40.0%
GTCATCTAAATGAGGCATGT+TGG - chr3_2:6237136-6237155 None:intergenic 40.0%
ATGGGATTCCTATTGAGAGT+TGG + chr3_2:6237380-6237399 Msa0392830:CDS 40.0%
TCAACGAGTTTCTCCAGAAA+GGG - chr3_2:6237445-6237464 None:intergenic 40.0%
ATCAACGAGTTTCTCCAGAA+AGG - chr3_2:6237446-6237465 None:intergenic 40.0%
TAATTCTATGAAGGGAGAGG+AGG - chr3_2:6237541-6237560 None:intergenic 40.0%
GACTAATTCTATGAAGGGAG+AGG - chr3_2:6237544-6237563 None:intergenic 40.0%
CTTACTGAACTACAGTACAG+AGG + chr3_2:6237762-6237781 Msa0392830:three_prime_UTR 40.0%
!! TCTTCGGGTTTTCTAGTGAC+GGG + chr3_2:6236118-6236137 Msa0392830:CDS 45.0%
!! ATGCTTTCGTCAAGGGTACT+AGG - chr3_2:6236225-6236244 None:intergenic 45.0%
CTGCTTCTATGCTTTCGTCA+AGG - chr3_2:6236233-6236252 None:intergenic 45.0%
GCAGCAAGCTACCAATATGT+AGG + chr3_2:6236249-6236268 Msa0392830:CDS 45.0%
AGGATCCTGTGAAGAGTTTC+AGG + chr3_2:6236269-6236288 Msa0392830:CDS 45.0%
AGCCAATGCCTGATTCTTCA+TGG + chr3_2:6236292-6236311 Msa0392830:CDS 45.0%
AGAATCAAGCTGACATGACC+TGG - chr3_2:6236367-6236386 None:intergenic 45.0%
TACTAGAGCTGGCAATGAGT+TGG - chr3_2:6236451-6236470 None:intergenic 45.0%
! ATTGCCAGCTCTAGTAAGCA+AGG + chr3_2:6236455-6236474 Msa0392830:CDS 45.0%
! GTGGATCAGTGTTTCTGTGA+AGG - chr3_2:6236654-6236673 None:intergenic 45.0%
CATATTGCGCCATTGTAGAG+TGG - chr3_2:6236673-6236692 None:intergenic 45.0%
TCCAAAAACTCGTGGAGGAA+GGG - chr3_2:6236764-6236783 None:intergenic 45.0%
CTGAGGAGAGTTGTCTACTA+TGG - chr3_2:6236978-6236997 None:intergenic 45.0%
CATAGTAGACAACTCTCCTC+AGG + chr3_2:6236976-6236995 Msa0392830:CDS 45.0%
TCTGGAGAAACTCGTTGATG+TGG + chr3_2:6237447-6237466 Msa0392830:CDS 45.0%
ATGTGCAAGACAACTAGGCA+GGG - chr3_2:6237609-6237628 None:intergenic 45.0%
AATGTGCAAGACAACTAGGC+AGG - chr3_2:6237610-6237629 None:intergenic 45.0%
!! TCTTCGGGTTTTCTAGTGAC+GGG + chr3_2:6236118-6236137 Msa0392830:CDS 45.0%
!! ATGCTTTCGTCAAGGGTACT+AGG - chr3_2:6236225-6236244 None:intergenic 45.0%
CTGCTTCTATGCTTTCGTCA+AGG - chr3_2:6236233-6236252 None:intergenic 45.0%
GCAGCAAGCTACCAATATGT+AGG + chr3_2:6236249-6236268 Msa0392830:CDS 45.0%
AGGATCCTGTGAAGAGTTTC+AGG + chr3_2:6236269-6236288 Msa0392830:CDS 45.0%
AGCCAATGCCTGATTCTTCA+TGG + chr3_2:6236292-6236311 Msa0392830:CDS 45.0%
AGAATCAAGCTGACATGACC+TGG - chr3_2:6236367-6236386 None:intergenic 45.0%
TACTAGAGCTGGCAATGAGT+TGG - chr3_2:6236451-6236470 None:intergenic 45.0%
! ATTGCCAGCTCTAGTAAGCA+AGG + chr3_2:6236455-6236474 Msa0392830:CDS 45.0%
! GTGGATCAGTGTTTCTGTGA+AGG - chr3_2:6236654-6236673 None:intergenic 45.0%
CATATTGCGCCATTGTAGAG+TGG - chr3_2:6236673-6236692 None:intergenic 45.0%
TCCAAAAACTCGTGGAGGAA+GGG - chr3_2:6236764-6236783 None:intergenic 45.0%
CTGAGGAGAGTTGTCTACTA+TGG - chr3_2:6236978-6236997 None:intergenic 45.0%
CATAGTAGACAACTCTCCTC+AGG + chr3_2:6236976-6236995 Msa0392830:CDS 45.0%
TCTGGAGAAACTCGTTGATG+TGG + chr3_2:6237447-6237466 Msa0392830:CDS 45.0%
ATGTGCAAGACAACTAGGCA+GGG - chr3_2:6237609-6237628 None:intergenic 45.0%
AATGTGCAAGACAACTAGGC+AGG - chr3_2:6237610-6237629 None:intergenic 45.0%
!! TGAAATAAATTAATAAATTA+AGG - chr3_2:6236584-6236603 None:intergenic 5.0%
!! TGAAATAAATTAATAAATTA+AGG - chr3_2:6236584-6236603 None:intergenic 5.0%
TTACTGTCATCCGCTCGATC+AGG - chr3_2:6236045-6236064 None:intergenic 50.0%
TGGCTCCTGAAACTCTTCAC+AGG - chr3_2:6236277-6236296 None:intergenic 50.0%
GTCTCCTTGCTTACTAGAGC+TGG - chr3_2:6236462-6236481 None:intergenic 50.0%
CTCCAAAAACTCGTGGAGGA+AGG - chr3_2:6236765-6236784 None:intergenic 50.0%
CTCTCTCCAAAAACTCGTGG+AGG - chr3_2:6236769-6236788 None:intergenic 50.0%
GAAGACGGAGGAAATACCTG+AGG - chr3_2:6236995-6237014 None:intergenic 50.0%
TTACTGTCATCCGCTCGATC+AGG - chr3_2:6236045-6236064 None:intergenic 50.0%
TGGCTCCTGAAACTCTTCAC+AGG - chr3_2:6236277-6236296 None:intergenic 50.0%
GTCTCCTTGCTTACTAGAGC+TGG - chr3_2:6236462-6236481 None:intergenic 50.0%
CTCCAAAAACTCGTGGAGGA+AGG - chr3_2:6236765-6236784 None:intergenic 50.0%
CTCTCTCCAAAAACTCGTGG+AGG - chr3_2:6236769-6236788 None:intergenic 50.0%
GAAGACGGAGGAAATACCTG+AGG - chr3_2:6236995-6237014 None:intergenic 50.0%
GACTAACCCACCTGATCGAG+CGG + chr3_2:6236032-6236051 Msa0392830:CDS 55.0%
TGTCATCCGCTCGATCAGGT+GGG - chr3_2:6236041-6236060 None:intergenic 55.0%
! CAGTAAGTGGCTTGGCCTGA+TGG - chr3_2:6236332-6236351 None:intergenic 55.0%
! GCCCTTCCTCCACGAGTTTT+TGG + chr3_2:6236760-6236779 Msa0392830:CDS 55.0%
CTATGAAGGGAGAGGAGGTC+CGG - chr3_2:6237536-6237555 None:intergenic 55.0%
GACTAACCCACCTGATCGAG+CGG + chr3_2:6236032-6236051 Msa0392830:CDS 55.0%
TGTCATCCGCTCGATCAGGT+GGG - chr3_2:6236041-6236060 None:intergenic 55.0%
! CAGTAAGTGGCTTGGCCTGA+TGG - chr3_2:6236332-6236351 None:intergenic 55.0%
! GCCCTTCCTCCACGAGTTTT+TGG + chr3_2:6236760-6236779 Msa0392830:CDS 55.0%
CTATGAAGGGAGAGGAGGTC+CGG - chr3_2:6237536-6237555 None:intergenic 55.0%
CTGTCATCCGCTCGATCAGG+TGG - chr3_2:6236042-6236061 None:intergenic 60.0%
CTGTCATCCGCTCGATCAGG+TGG - chr3_2:6236042-6236061 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 6235933 6237835 6235933 ID=Msa0392830;Name=Msa0392830
chr3_2 mRNA 6235933 6237835 6235933 ID=Msa0392830-mRNA-1;Parent=Msa0392830;Name=Msa0392830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=73|1|1|1|0.66|0.5|4|316|330
chr3_2 exon 6235933 6235991 6235933 ID=Msa0392830-mRNA-1:exon:1590;Parent=Msa0392830-mRNA-1
chr3_2 exon 6236016 6236522 6236016 ID=Msa0392830-mRNA-1:exon:1591;Parent=Msa0392830-mRNA-1
chr3_2 exon 6236660 6236997 6236660 ID=Msa0392830-mRNA-1:exon:1592;Parent=Msa0392830-mRNA-1
chr3_2 exon 6237358 6237835 6237358 ID=Msa0392830-mRNA-1:exon:1593;Parent=Msa0392830-mRNA-1
chr3_2 five_prime_UTR 6235933 6235991 6235933 ID=Msa0392830-mRNA-1:five_prime_utr;Parent=Msa0392830-mRNA-1
chr3_2 five_prime_UTR 6236016 6236029 6236016 ID=Msa0392830-mRNA-1:five_prime_utr;Parent=Msa0392830-mRNA-1
chr3_2 CDS 6236030 6236522 6236030 ID=Msa0392830-mRNA-1:cds;Parent=Msa0392830-mRNA-1
chr3_2 CDS 6236660 6236997 6236660 ID=Msa0392830-mRNA-1:cds;Parent=Msa0392830-mRNA-1
chr3_2 CDS 6237358 6237519 6237358 ID=Msa0392830-mRNA-1:cds;Parent=Msa0392830-mRNA-1
chr3_2 three_prime_UTR 6237520 6237835 6237520 ID=Msa0392830-mRNA-1:three_prime_utr;Parent=Msa0392830-mRNA-1
Gene Sequence

>Msa0392830

ATGACTAACCCACCTGATCGAGCGGATGACAGTAACTTTCCAAATTTCGAAATACCTGATATGTTAGACTACTATGTGGATGAAGCATTCTTCGGGTTTTCTAGTGACGGGATCAATCCATTTGATGATGGTCTCGACTATAGTACCTTTTCCGATCTTGAATTTGCTGGACCAAATTTGTTATACGATCTTCCTAGTACCCTTGACGAAAGCATAGAAGCAGCAAGCTACCAATATGTAGGATCCTGTGAAGAGTTTCAGGAGCCAATGCCTGATTCTTCATGGTTCAATGTCATTTGCCATCAGGCCAAGCCACTTACTGAAGAACATGATGCCAGGTCATGTCAGCTTGATTCTGAAAGAGTAGATTATACTGATCCCGAGATATTCATAAGCTTCTTGGAGGTATCAGATGAATCCAACTCATTGCCAGCTCTAGTAAGCAAGGAGACAAGTAAAAGGAAGCATGTTACCCTTGTTCTTGATTTGGATGAAACACTGATCCACTCTACAATGGCGCAATATGATAGTCGTGCTGACTTCACAATTCCAGTTTTACTTGACAAGGAGTACACTGTCTATGTGCGAAAAAGGCCCTTCCTCCACGAGTTTTTGGAGAGAGTATCGAAGATGTTTGAGATCGTCATTTTTACAGCAAGTAAAAAGATTTATGCGGAAAAGTTGCTAGATGTTCTTGATCCTGACAGAAAATTTTTTTCTCGAAGATTATACCGAGATTCGTGCATCTATCAAGATGGCACTTTCACCAAAGATTTGACAGTTCTTGGACTTGACCTAGCAAAAGTAGCCATAGTAGACAACTCTCCTCAGGTGTTCAGACTGCAAGTTAACAATGGGATTCCTATTGAGAGTTGGTTTGATGATCCATCTGATTCTGCTTTGATTTCTTTACTTCCCTTTCTGGAGAAACTCGTTGATGTGGACGATGTTCGACCGATTATCGCAGAGAAATTTGAGAACAAGAAGAATTAG
Protein sequence

>Msa0392830

MTNPPDRADDSNFPNFEIPDMLDYYVDEAFFGFSSDGINPFDDGLDYSTFSDLEFAGPNLLYDLPSTLDESIEAASYQYVGSCEEFQEPMPDSSWFNVICHQAKPLTEEHDARSCQLDSERVDYTDPEIFISFLEVSDESNSLPALVSKETSKRKHVTLVLDLDETLIHSTMAQYDSRADFTIPVLLDKEYTVYVRKRPFLHEFLERVSKMFEIVIFTASKKIYAEKLLDVLDPDRKFFSRRLYRDSCIYQDGTFTKDLTVLGLDLAKVAIVDNSPQVFRLQVNNGIPIESWFDDPSDSALISLLPFLEKLVDVDDVRPIIAEKFENKKN*