Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397110 | AFK33457.1 | 95.000 | 40 | 2 | 0 | 1 | 40 | 261 | 300 | 1.32e-14 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397110 | I3RZL5 | 95.000 | 40 | 2 | 0 | 1 | 40 | 261 | 300 | 6.32e-15 | 78.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0358510 | Msa0397110 | 0.873851 | 1.067527e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397110 | MtrunA17_Chr3g0128271 | 95.000 | 40 | 2 | 0 | 1 | 40 | 261 | 300 | 1.29e-18 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397110 | AT5G54100.1 | 70.000 | 40 | 12 | 0 | 1 | 40 | 301 | 340 | 8.47e-12 | 59.3 |
| Msa0397110 | AT4G27585.1 | 71.053 | 38 | 11 | 0 | 3 | 40 | 260 | 297 | 6.68e-11 | 57.0 |
Find 64 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAATATTTGGTGAAAAT+TGG | 0.102914 | 3_2:+16055807 | None:intergenic |
| AAATTTGTAGTCTGTGTTTA+TGG | 0.103638 | 3_2:-16054680 | Msa0397110:five_prime_UTR |
| AGGTGAAACAATTTGAATTT+AGG | 0.145343 | 3_2:+16055665 | None:intergenic |
| AGCTCTTGCTTTGGCAATTA+TGG | 0.210969 | 3_2:+16054086 | None:intergenic |
| TGGTGAAAATTGGGAAAATT+TGG | 0.213372 | 3_2:+16055817 | None:intergenic |
| GGTGAAACAATTTGAATTTA+GGG | 0.254793 | 3_2:+16055666 | None:intergenic |
| GTAGATTAGATCTGAATATT+TGG | 0.274522 | 3_2:+16055797 | None:intergenic |
| GTTTGTAAGACTTGTGAATT+TGG | 0.296225 | 3_2:-16051734 | Msa0397110:three_prime_UTR |
| TTTGGAATTTCGGTTGTTAT+AGG | 0.309361 | 3_2:+16055875 | None:intergenic |
| CTGAATATTTGGTGAAAATT+GGG | 0.314466 | 3_2:+16055808 | None:intergenic |
| TCACAAGCCCTAAAAGAAAA+TGG | 0.332121 | 3_2:-16054039 | Msa0397110:CDS |
| TCCTATAGCAACGAACGATT+TGG | 0.358877 | 3_2:+16055857 | None:intergenic |
| CTTGGTAGTTTGATTCTTCA+AGG | 0.360717 | 3_2:+16052604 | None:intergenic |
| TTCAGCTGTAGCTCTTGCTT+TGG | 0.375315 | 3_2:+16054077 | None:intergenic |
| CAACGAACGATTTGGAATTT+CGG | 0.376096 | 3_2:+16055865 | None:intergenic |
| GACGACCTGTAGTGTTAAAC+AGG | 0.396052 | 3_2:-16054653 | Msa0397110:five_prime_UTR |
| TGAACAGGAGAGAAGATAGA+AGG | 0.400148 | 3_2:+16055731 | None:intergenic |
| TCCAAATCGTTCGTTGCTAT+AGG | 0.404900 | 3_2:-16055858 | Msa0397110:five_prime_UTR |
| TGCTTTGGCAATTATGGCAT+CGG | 0.406672 | 3_2:+16054092 | None:intergenic |
| GAATTTAGGGGCGATAGATC+TGG | 0.436868 | 3_2:+16055679 | None:intergenic |
| ATTCATCTTTCACTGATCTC+AGG | 0.442392 | 3_2:-16055619 | Msa0397110:intron |
| GTGTTAAACAGGAGAGAGGC+AGG | 0.447372 | 3_2:-16054642 | Msa0397110:five_prime_UTR |
| AACTATTGATGACTTAAGCT+TGG | 0.453768 | 3_2:+16051831 | None:intergenic |
| TATTGCAGGTTTACTGTCCT+CGG | 0.465364 | 3_2:-16052060 | Msa0397110:intron |
| GCGATAGAGTGTGGAGAAAG+AGG | 0.467287 | 3_2:+16055758 | None:intergenic |
| TTTCATTAGGTGATGGGAAG+AGG | 0.468500 | 3_2:-16054761 | Msa0397110:intron |
| GCGAGAGAAAGGAAAGTGAA+TGG | 0.473955 | 3_2:-16054727 | Msa0397110:five_prime_UTR |
| CAATCTTTGAATCATATTTG+AGG | 0.477529 | 3_2:+16051915 | None:intergenic |
| GAAGGAATTGCGATAGAGTG+TGG | 0.484572 | 3_2:+16055749 | None:intergenic |
| TCACATGAAGTGCTGAAACT+TGG | 0.487346 | 3_2:+16052586 | None:intergenic |
| AAGAGGAAAGAGAGAGGGGA+CGG | 0.497448 | 3_2:+16055775 | None:intergenic |
| AAGGAAAGTGAATGGTTACT+TGG | 0.498792 | 3_2:-16054719 | Msa0397110:five_prime_UTR |
| TCGGATGACAAGAATAAGAA+TGG | 0.501204 | 3_2:-16052041 | Msa0397110:CDS |
| TGGAGAAAGAGGAAAGAGAG+AGG | 0.503587 | 3_2:+16055769 | None:intergenic |
| GTTCTATAAGCATAAGAGCT+TGG | 0.516550 | 3_2:-16051796 | Msa0397110:three_prime_UTR |
| TTAAGAAACTGGAATAGAGA+AGG | 0.519529 | 3_2:+16051883 | None:intergenic |
| GACTACAAATTTGAATGACA+TGG | 0.524139 | 3_2:+16054691 | None:intergenic |
| TCTTACATCAGAAGCAGCTA+TGG | 0.525545 | 3_2:-16054580 | Msa0397110:exon |
| GAGAAAGAGGAAAGAGAGAG+GGG | 0.527090 | 3_2:+16055771 | None:intergenic |
| TCTCTCCTGTTTAACACTAC+AGG | 0.531985 | 3_2:+16054648 | None:intergenic |
| GGAGAAAGAGGAAAGAGAGA+GGG | 0.536543 | 3_2:+16055770 | None:intergenic |
| CTTTGAATCATATTTGAGGC+CGG | 0.543089 | 3_2:+16051919 | None:intergenic |
| CATTAGGTGATGGGAAGAGG+TGG | 0.546609 | 3_2:-16054758 | Msa0397110:intron |
| ACTTCTCTTCAGACCTTGCA+AGG | 0.566682 | 3_2:-16052543 | Msa0397110:intron |
| GTGAAACAATTTGAATTTAG+GGG | 0.567705 | 3_2:+16055667 | None:intergenic |
| ATTCTTATTCTTGTCATCCG+AGG | 0.578067 | 3_2:+16052043 | None:intergenic |
| CGATAGATCTGGTAAGAAGA+GGG | 0.587782 | 3_2:+16055690 | None:intergenic |
| GCTCATGTAAACAGAGCTGA+AGG | 0.589569 | 3_2:-16054620 | Msa0397110:five_prime_UTR |
| ACATCTGCAAAAGTGTGTGC+CGG | 0.592785 | 3_2:-16051938 | Msa0397110:three_prime_UTR |
| TACATCAGAAGCAGCTATGG+AGG | 0.593241 | 3_2:-16054577 | Msa0397110:exon |
| AAAGCAAGAGCTACAGCTGA+AGG | 0.595491 | 3_2:-16054075 | Msa0397110:CDS |
| GCGATAGATCTGGTAAGAAG+AGG | 0.603832 | 3_2:+16055689 | None:intergenic |
| TTGCAAGGTCTGAAGAGAAG+TGG | 0.616653 | 3_2:+16052545 | None:intergenic |
| AGTGAAAGATGAATCGATTG+TGG | 0.621029 | 3_2:+16055628 | None:intergenic |
| GATGAATCGATTGTGGTCAG+AGG | 0.623804 | 3_2:+16055635 | None:intergenic |
| GATCAAGTTAACAGAGCGAG+AGG | 0.623847 | 3_2:-16054555 | Msa0397110:intron |
| GGTATACGAAGTACCTTGCA+AGG | 0.625171 | 3_2:+16052530 | None:intergenic |
| ACTACAAATTTGAATGACAT+GGG | 0.626703 | 3_2:+16054692 | None:intergenic |
| AGATCTGGTAAGAAGAGGGA+AGG | 0.626755 | 3_2:+16055694 | None:intergenic |
| TGTAGTGTTAAACAGGAGAG+AGG | 0.650076 | 3_2:-16054646 | Msa0397110:five_prime_UTR |
| TTGTGGTCAGAGGTGAGCAA+AGG | 0.650911 | 3_2:+16055645 | None:intergenic |
| AAAAGAAAATGGAGGACCAG+AGG | 0.656444 | 3_2:-16054028 | Msa0397110:intron |
| TCACAAGTCTTACAAACACG+TGG | 0.668775 | 3_2:+16051740 | None:intergenic |
| CAAGCCCTAAAAGAAAATGG+AGG | 0.728545 | 3_2:-16054036 | Msa0397110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTCTAGAAAAAT+TGG | - | chr3_2:16052188-16052207 | Msa0397110:intron | 10.0% |
| !!! | AACAATATTTTGATTTTTTT+GGG | - | chr3_2:16052265-16052284 | Msa0397110:intron | 10.0% |
| !! | CAAATATATAATGAATATAT+AGG | + | chr3_2:16052571-16052590 | None:intergenic | 10.0% |
| !! | CTATATATTCATTATATATT+TGG | - | chr3_2:16052569-16052588 | Msa0397110:CDS | 10.0% |
| !! | TTAATTACATGTTTATATAT+TGG | - | chr3_2:16053073-16053092 | Msa0397110:intron | 10.0% |
| !!! | ATTATTTTTATTTTTTGAAG+AGG | - | chr3_2:16053266-16053285 | Msa0397110:intron | 10.0% |
| !!! | TATAGAATTTATCTTTTATT+TGG | - | chr3_2:16054331-16054350 | Msa0397110:intron | 10.0% |
| !!! | ATAGAATTTATCTTTTATTT+GGG | - | chr3_2:16054332-16054351 | Msa0397110:intron | 10.0% |
| !!! | ATTTAAATTTAAACTTGTTA+GGG | - | chr3_2:16054371-16054390 | Msa0397110:intron | 10.0% |
| !! | TTAACTATTATATAATCTTC+TGG | - | chr3_2:16052227-16052246 | Msa0397110:intron | 15.0% |
| !!! | CAACAATATTTTGATTTTTT+TGG | - | chr3_2:16052264-16052283 | Msa0397110:intron | 15.0% |
| !!! | ACAATATTTTGATTTTTTTG+GGG | - | chr3_2:16052266-16052285 | Msa0397110:intron | 15.0% |
| !!! | TAATTGTAATTTTCTTATTC+TGG | - | chr3_2:16054004-16054023 | Msa0397110:intron | 15.0% |
| !!! | GATTTAAATTTAAACTTGTT+AGG | - | chr3_2:16054370-16054389 | Msa0397110:intron | 15.0% |
| !!! | TTATATTTTTAATACCTCTT+TGG | + | chr3_2:16054883-16054902 | None:intergenic | 15.0% |
| !!! | GAGGTATTAAAAATATAAAT+TGG | - | chr3_2:16054885-16054904 | Msa0397110:intron | 15.0% |
| !!! | TTCTTTTTTTATTATAAGAG+TGG | - | chr3_2:16054966-16054985 | Msa0397110:intron | 15.0% |
| !! | AAGTATATTACAATTCTTAA+TGG | + | chr3_2:16055475-16055494 | None:intergenic | 15.0% |
| !!! | TTATTTGTTTGTTATGACAA+TGG | - | chr3_2:16052542-16052561 | Msa0397110:intron | 20.0% |
| !! | ACATTAACTAAAACATTTAG+TGG | + | chr3_2:16052717-16052736 | None:intergenic | 20.0% |
| !! | GAAATAATTATTAGTGACAA+TGG | - | chr3_2:16052767-16052786 | Msa0397110:intron | 20.0% |
| !! | GAATAATATTGTCAAAGAAA+TGG | + | chr3_2:16053108-16053127 | None:intergenic | 20.0% |
| !! | TAAATTGAACACCAAATTTA+TGG | + | chr3_2:16053362-16053381 | None:intergenic | 20.0% |
| !!! | ATAAATTTGGTGTTCAATTT+AGG | - | chr3_2:16053361-16053380 | Msa0397110:intron | 20.0% |
| !!! | TAAATTTGGTGTTCAATTTA+GGG | - | chr3_2:16053362-16053381 | Msa0397110:intron | 20.0% |
| !! | TTAAAATTTCCAAGTATCAT+TGG | + | chr3_2:16053667-16053686 | None:intergenic | 20.0% |
| !! | CATTGAATGAATTCTAATAT+AGG | + | chr3_2:16053740-16053759 | None:intergenic | 20.0% |
| !! | CATATTCAATAATTGGTTAT+GGG | - | chr3_2:16053807-16053826 | Msa0397110:intron | 20.0% |
| !!! | ATTCTATTTCTAGTAAAACT+AGG | + | chr3_2:16054151-16054170 | None:intergenic | 20.0% |
| !! | TTGTGGTTTAAATTATTGTT+TGG | - | chr3_2:16054605-16054624 | Msa0397110:five_prime_UTR | 20.0% |
| !! | TAAATTATTGTTTGGTTAAC+AGG | - | chr3_2:16054613-16054632 | Msa0397110:five_prime_UTR | 20.0% |
| !!! | TTGTTGCTTTCATATTTTAT+TGG | - | chr3_2:16054692-16054711 | Msa0397110:five_prime_UTR | 20.0% |
| !!! | AAGACATGATACATATTTTT+TGG | - | chr3_2:16054767-16054786 | Msa0397110:intron | 20.0% |
| !! | AATTGTAATATACTTGTTCA+GGG | - | chr3_2:16055480-16055499 | Msa0397110:intron | 20.0% |
| !! | GAAATTGTAATTATTATTGC+AGG | - | chr3_2:16055531-16055550 | Msa0397110:intron | 20.0% |
| !!! | ATCATATTTTCTTAAGAAAC+TGG | + | chr3_2:16055736-16055755 | None:intergenic | 20.0% |
| !! | CTGAATATTTGGTGAAAATT+GGG | + | chr3_2:16051800-16051819 | None:intergenic | 25.0% |
| !! | TCTGAATATTTGGTGAAAAT+TGG | + | chr3_2:16051801-16051820 | None:intergenic | 25.0% |
| ! | GTAGATTAGATCTGAATATT+TGG | + | chr3_2:16051811-16051830 | None:intergenic | 25.0% |
| ! | GTGAAACAATTTGAATTTAG+GGG | + | chr3_2:16051941-16051960 | None:intergenic | 25.0% |
| ! | GGTGAAACAATTTGAATTTA+GGG | + | chr3_2:16051942-16051961 | None:intergenic | 25.0% |
| ! | AGGTGAAACAATTTGAATTT+AGG | + | chr3_2:16051943-16051962 | None:intergenic | 25.0% |
| ! | TGCTTAATAGTGTTCAAATT+GGG | - | chr3_2:16052044-16052063 | Msa0397110:CDS | 25.0% |
| ! | TCAATACTAGATGTAGATTT+AGG | - | chr3_2:16052086-16052105 | Msa0397110:intron | 25.0% |
| ! | CAATACTAGATGTAGATTTA+GGG | - | chr3_2:16052087-16052106 | Msa0397110:intron | 25.0% |
| ! | TATATCTGGTTGAATGAAAA+AGG | - | chr3_2:16052337-16052356 | Msa0397110:intron | 25.0% |
| ! | TGCTAAAATTGAATAGTCAA+AGG | + | chr3_2:16052388-16052407 | None:intergenic | 25.0% |
| ! | ACTACAAATTTGAATGACAT+GGG | + | chr3_2:16052916-16052935 | None:intergenic | 25.0% |
| ! | AAATTTGTAGTCTGTGTTTA+TGG | - | chr3_2:16052925-16052944 | Msa0397110:intron | 25.0% |
| ! | GCAAAGATGATTAATTAGAT+TGG | - | chr3_2:16053290-16053309 | Msa0397110:intron | 25.0% |
| ! | AAGCTTAAATTGATAGGATA+AGG | + | chr3_2:16053407-16053426 | None:intergenic | 25.0% |
| ! | TCAAACAAGCTTAAATTGAT+AGG | + | chr3_2:16053413-16053432 | None:intergenic | 25.0% |
| !!! | AAGGTTTTTAAGATATCAAG+TGG | + | chr3_2:16053460-16053479 | None:intergenic | 25.0% |
| !! | GAATGGTGTTAAGTATTATA+AGG | + | chr3_2:16053479-16053498 | None:intergenic | 25.0% |
| !!! | TTTTGTTTACCAATGATACT+TGG | - | chr3_2:16053655-16053674 | Msa0397110:intron | 25.0% |
| !!! | GAATTTTTTGCTTAAGACAT+TGG | - | chr3_2:16053779-16053798 | Msa0397110:intron | 25.0% |
| ! | CCATAACCAATTATTGAATA+TGG | + | chr3_2:16053809-16053828 | None:intergenic | 25.0% |
| ! | CCATATTCAATAATTGGTTA+TGG | - | chr3_2:16053806-16053825 | Msa0397110:intron | 25.0% |
| ! | TTATTAAATCCAAAGTCATG+AGG | + | chr3_2:16053862-16053881 | None:intergenic | 25.0% |
| !! | TGTAATTTTCTTATTCTGGT+TGG | - | chr3_2:16054008-16054027 | Msa0397110:intron | 25.0% |
| ! | AAAAGGAAATCATCAAACAA+GGG | + | chr3_2:16054302-16054321 | None:intergenic | 25.0% |
| ! | ATTCTATACTGTAAGACAAA+AGG | + | chr3_2:16054319-16054338 | None:intergenic | 25.0% |
| ! | TATGATTGCTCAGTAAAAAA+AGG | - | chr3_2:16054512-16054531 | Msa0397110:intron | 25.0% |
| ! | ATGATTGCTCAGTAAAAAAA+GGG | - | chr3_2:16054513-16054532 | Msa0397110:intron | 25.0% |
| ! | TAAAAGCTGCTATTAGATAT+TGG | - | chr3_2:16054559-16054578 | Msa0397110:CDS | 25.0% |
| ! | AAAAGCTGCTATTAGATATT+GGG | - | chr3_2:16054560-16054579 | Msa0397110:CDS | 25.0% |
| !!! | CTGCTTTTTTTTGTTTTTTG+TGG | - | chr3_2:16054588-16054607 | Msa0397110:five_prime_UTR | 25.0% |
| ! | TGAAAGCAACAAGTAAAAAA+AGG | + | chr3_2:16054684-16054703 | None:intergenic | 25.0% |
| ! | GATTGACAAGATAATGAAAT+GGG | + | chr3_2:16054741-16054760 | None:intergenic | 25.0% |
| ! | TGATTGACAAGATAATGAAA+TGG | + | chr3_2:16054742-16054761 | None:intergenic | 25.0% |
| ! | AAATATGACTGAGATGATAA+CGG | - | chr3_2:16055195-16055214 | Msa0397110:intron | 25.0% |
| !!! | ATGTTACACCTACTTTTAAA+TGG | - | chr3_2:16055223-16055242 | Msa0397110:intron | 25.0% |
| !!! | TTGTTGATGAGATTTCTTTT+AGG | - | chr3_2:16055258-16055277 | Msa0397110:intron | 25.0% |
| ! | TACAATAACAAAACACAACA+GGG | + | chr3_2:16055300-16055319 | None:intergenic | 25.0% |
| ! | AGAAAAATAGCAGATTATCA+TGG | + | chr3_2:16055428-16055447 | None:intergenic | 25.0% |
| ! | GAATTGTAATATACTTGTTC+AGG | - | chr3_2:16055479-16055498 | Msa0397110:intron | 25.0% |
| ! | CAATCTTTGAATCATATTTG+AGG | + | chr3_2:16055693-16055712 | None:intergenic | 25.0% |
| ! | TTTGGAATTTCGGTTGTTAT+AGG | + | chr3_2:16051733-16051752 | None:intergenic | 30.0% |
| TGGTGAAAATTGGGAAAATT+TGG | + | chr3_2:16051791-16051810 | None:intergenic | 30.0% | |
| ! | GTTTTCTGAATCTTTTGAAC+AGG | + | chr3_2:16051892-16051911 | None:intergenic | 30.0% |
| CTGCTTAATAGTGTTCAAAT+TGG | - | chr3_2:16052043-16052062 | Msa0397110:CDS | 30.0% | |
| ATTGGGTCTGTTATTAGAAA+AGG | - | chr3_2:16052061-16052080 | Msa0397110:intron | 30.0% | |
| !!! | TTTTTTTGGGGAAAATTTGC+TGG | - | chr3_2:16052278-16052297 | Msa0397110:intron | 30.0% |
| TAAATATAGACAAAACGCAC+AGG | + | chr3_2:16052459-16052478 | None:intergenic | 30.0% | |
| ! | GAAAAAGCACAAACTCTTTA+GGG | + | chr3_2:16052828-16052847 | None:intergenic | 30.0% |
| ! | TGAAAAAGCACAAACTCTTT+AGG | + | chr3_2:16052829-16052848 | None:intergenic | 30.0% |
| !!! | AGAGTTTGTGCTTTTTCATT+AGG | - | chr3_2:16052831-16052850 | Msa0397110:intron | 30.0% |
| GACTACAAATTTGAATGACA+TGG | + | chr3_2:16052917-16052936 | None:intergenic | 30.0% | |
| TTGTCAAAGAAATGGAAGTT+GGG | + | chr3_2:16053100-16053119 | None:intergenic | 30.0% | |
| ATTGTCAAAGAAATGGAAGT+TGG | + | chr3_2:16053101-16053120 | None:intergenic | 30.0% | |
| ATTGAACACCAAATTTATGG+TGG | + | chr3_2:16053359-16053378 | None:intergenic | 30.0% | |
| TGGAACTAACAATGTAGTAA+GGG | + | chr3_2:16053440-16053459 | None:intergenic | 30.0% | |
| ! | ACTTAACACCATTCTTTTTC+AGG | - | chr3_2:16053485-16053504 | Msa0397110:intron | 30.0% |
| TTCAATGTCATTGTCATATG+TGG | - | chr3_2:16053753-16053772 | Msa0397110:intron | 30.0% | |
| GGATTGCCATATTCAATAAT+TGG | - | chr3_2:16053800-16053819 | Msa0397110:intron | 30.0% | |
| AAAACTAGGAACATTTGTGA+AGG | + | chr3_2:16054137-16054156 | None:intergenic | 30.0% | |
| TAATGTCACTAGTTAAACAC+AGG | + | chr3_2:16054189-16054208 | None:intergenic | 30.0% | |
| TTTCACATCTACTTGAGTAA+AGG | - | chr3_2:16054210-16054229 | Msa0397110:intron | 30.0% | |
| CAAAAGGAAATCATCAAACA+AGG | + | chr3_2:16054303-16054322 | None:intergenic | 30.0% | |
| !! | AAATTTAAACTTGTTAGGGC+TGG | - | chr3_2:16054375-16054394 | Msa0397110:intron | 30.0% |
| CTATATAGGCAATTCAAAGT+AGG | - | chr3_2:16054400-16054419 | Msa0397110:intron | 30.0% | |
| TCAAAATATTCATCCACATG+CGG | + | chr3_2:16054461-16054480 | None:intergenic | 30.0% | |
| GCAATCATAAGTCAAATTGT+TGG | + | chr3_2:16054501-16054520 | None:intergenic | 30.0% | |
| TGATTGCTCAGTAAAAAAAG+GGG | - | chr3_2:16054514-16054533 | Msa0397110:intron | 30.0% | |
| AAAGCTGCTATTAGATATTG+GGG | - | chr3_2:16054561-16054580 | Msa0397110:CDS | 30.0% | |
| ATGGACATCATTGTATAAAC+TGG | + | chr3_2:16054827-16054846 | None:intergenic | 30.0% | |
| AATATGACTGAGATGATAAC+GGG | - | chr3_2:16055196-16055215 | Msa0397110:intron | 30.0% | |
| CTACAATAACAAAACACAAC+AGG | + | chr3_2:16055301-16055320 | None:intergenic | 30.0% | |
| !!! | CTGTTGTGTTTTGTTATTGT+AGG | - | chr3_2:16055299-16055318 | Msa0397110:intron | 30.0% |
| TTAAGAAACTGGAATAGAGA+AGG | + | chr3_2:16055725-16055744 | None:intergenic | 30.0% | |
| ! | AACTATTGATGACTTAAGCT+TGG | + | chr3_2:16055777-16055796 | None:intergenic | 30.0% |
| GTTTGTAAGACTTGTGAATT+TGG | - | chr3_2:16055871-16055890 | Msa0397110:five_prime_UTR | 30.0% | |
| ! | CAACGAACGATTTGGAATTT+CGG | + | chr3_2:16051743-16051762 | None:intergenic | 35.0% |
| AGTGAAAGATGAATCGATTG+TGG | + | chr3_2:16051980-16051999 | None:intergenic | 35.0% | |
| ATTCATCTTTCACTGATCTC+AGG | - | chr3_2:16051986-16052005 | Msa0397110:three_prime_UTR | 35.0% | |
| AACAACCTCAACGATTTCAT+CGG | + | chr3_2:16052148-16052167 | None:intergenic | 35.0% | |
| !!! | TGTGCTTTTTCATTAGGTGA+TGG | - | chr3_2:16052837-16052856 | Msa0397110:intron | 35.0% |
| !!! | GTGCTTTTTCATTAGGTGAT+GGG | - | chr3_2:16052838-16052857 | Msa0397110:intron | 35.0% |
| AAGGAAAGTGAATGGTTACT+TGG | - | chr3_2:16052886-16052905 | Msa0397110:intron | 35.0% | |
| GTAACATGCCACCATAAATT+TGG | - | chr3_2:16053348-16053367 | Msa0397110:intron | 35.0% | |
| GTGGAACTAACAATGTAGTA+AGG | + | chr3_2:16053441-16053460 | None:intergenic | 35.0% | |
| TCACAAGCCCTAAAAGAAAA+TGG | - | chr3_2:16053566-16053585 | Msa0397110:intron | 35.0% | |
| ! | TGGTCCTCCATTTTCTTTTA+GGG | + | chr3_2:16053576-16053595 | None:intergenic | 35.0% |
| ! | AACATATAGCTCTATCTGAG+TGG | + | chr3_2:16053710-16053729 | None:intergenic | 35.0% |
| ACTGTAATTCCTCATGACTT+TGG | - | chr3_2:16053850-16053869 | Msa0397110:intron | 35.0% | |
| ! | TTCTTATTCTGGTTGGCATA+TGG | - | chr3_2:16054015-16054034 | Msa0397110:intron | 35.0% |
| GGAACATTTGTGAAGGAAAT+TGG | + | chr3_2:16054130-16054149 | None:intergenic | 35.0% | |
| ! | ATCGTCTTTCAATAGCTTTG+TGG | + | chr3_2:16054262-16054281 | None:intergenic | 35.0% |
| ATTGAAAGACGATGCAGAAA+TGG | - | chr3_2:16054269-16054288 | Msa0397110:intron | 35.0% | |
| TGTGAAAGTGAATGAGTAGT+AGG | - | chr3_2:16054425-16054444 | Msa0397110:intron | 35.0% | |
| CAAAATATTCATCCACATGC+GGG | + | chr3_2:16054460-16054479 | None:intergenic | 35.0% | |
| TATTGTTTGGTTAACAGGTC+AGG | - | chr3_2:16054618-16054637 | Msa0397110:five_prime_UTR | 35.0% | |
| GAAATGGGAACATAATCATC+TGG | + | chr3_2:16054726-16054745 | None:intergenic | 35.0% | |
| ! | CTTGGTAGTTTGATTCTTCA+AGG | + | chr3_2:16055004-16055023 | None:intergenic | 35.0% |
| TCGTATACCACTATCATTTG+AGG | - | chr3_2:16055089-16055108 | Msa0397110:intron | 35.0% | |
| CGTATACCACTATCATTTGA+GGG | - | chr3_2:16055090-16055109 | Msa0397110:intron | 35.0% | |
| AATAGTCCCTCAAATGATAG+TGG | + | chr3_2:16055099-16055118 | None:intergenic | 35.0% | |
| ! | CGCTTATGCCATTTAAAAGT+AGG | + | chr3_2:16055234-16055253 | None:intergenic | 35.0% |
| !!! | GTTTTGTTATTGTAGGACGT+AGG | - | chr3_2:16055306-16055325 | Msa0397110:intron | 35.0% |
| TTCGTTGTTGTGTAAACCAA+AGG | - | chr3_2:16055354-16055373 | Msa0397110:intron | 35.0% | |
| ATTCTTATTCTTGTCATCCG+AGG | + | chr3_2:16055565-16055584 | None:intergenic | 35.0% | |
| TCGGATGACAAGAATAAGAA+TGG | - | chr3_2:16055564-16055583 | Msa0397110:intron | 35.0% | |
| ! | CTTTGAATCATATTTGAGGC+CGG | + | chr3_2:16055689-16055708 | None:intergenic | 35.0% |
| GTTCTATAAGCATAAGAGCT+TGG | - | chr3_2:16055809-16055828 | Msa0397110:five_prime_UTR | 35.0% | |
| TCCAAATCGTTCGTTGCTAT+AGG | - | chr3_2:16051747-16051766 | Msa0397110:three_prime_UTR | 40.0% | |
| TCCTATAGCAACGAACGATT+TGG | + | chr3_2:16051751-16051770 | None:intergenic | 40.0% | |
| TGAACAGGAGAGAAGATAGA+AGG | + | chr3_2:16051877-16051896 | None:intergenic | 40.0% | |
| CGATAGATCTGGTAAGAAGA+GGG | + | chr3_2:16051918-16051937 | None:intergenic | 40.0% | |
| ATCGGAAGGCAAGTTCAAAA+CGG | + | chr3_2:16052130-16052149 | None:intergenic | 40.0% | |
| !! | GGAAAATTTGCTGGTGATAG+TGG | - | chr3_2:16052287-16052306 | Msa0397110:intron | 40.0% |
| TAGGAGCAATCTGCTATATC+TGG | - | chr3_2:16052323-16052342 | Msa0397110:intron | 40.0% | |
| !! | TTTCATTAGGTGATGGGAAG+AGG | - | chr3_2:16052844-16052863 | Msa0397110:intron | 40.0% |
| ! | TGGTAGTTTTTGCGAGAGAA+AGG | - | chr3_2:16052867-16052886 | Msa0397110:intron | 40.0% |
| TCTCTCCTGTTTAACACTAC+AGG | + | chr3_2:16052960-16052979 | None:intergenic | 40.0% | |
| TGTAGTGTTAAACAGGAGAG+AGG | - | chr3_2:16052959-16052978 | Msa0397110:intron | 40.0% | |
| TCTTACATCAGAAGCAGCTA+TGG | - | chr3_2:16053025-16053044 | Msa0397110:intron | 40.0% | |
| ! | AGATAGCTTTTGACATCTGC+TGG | - | chr3_2:16053132-16053151 | Msa0397110:intron | 40.0% |
| !!! | ACACCATTCTTTTTCAGGTG+AGG | - | chr3_2:16053490-16053509 | Msa0397110:intron | 40.0% |
| TGCTTTGGCAATTATGGCAT+CGG | + | chr3_2:16053516-16053535 | None:intergenic | 40.0% | |
| AGCTCTTGCTTTGGCAATTA+TGG | + | chr3_2:16053522-16053541 | None:intergenic | 40.0% | |
| CAAGCCCTAAAAGAAAATGG+AGG | - | chr3_2:16053569-16053588 | Msa0397110:intron | 40.0% | |
| ! | CTGGTCCTCCATTTTCTTTT+AGG | + | chr3_2:16053577-16053596 | None:intergenic | 40.0% |
| AAAAGAAAATGGAGGACCAG+AGG | - | chr3_2:16053577-16053596 | Msa0397110:intron | 40.0% | |
| ATGTCATTGTCATATGTGGC+TGG | - | chr3_2:16053757-16053776 | Msa0397110:intron | 40.0% | |
| ! | TGGCATATGGTTTTCATACG+AGG | - | chr3_2:16054028-16054047 | Msa0397110:intron | 40.0% |
| ! | TGAAGGAAATTGGCCTATCA+GGG | + | chr3_2:16054120-16054139 | None:intergenic | 40.0% |
| TTGAATCTCTTTCCAACGTG+AGG | - | chr3_2:16054233-16054252 | Msa0397110:intron | 40.0% | |
| TGTTAGGGCTGGAACTATAT+AGG | - | chr3_2:16054386-16054405 | Msa0397110:intron | 40.0% | |
| !!! | AGGGGTCTATTTTAGAGTGA+AGG | - | chr3_2:16054532-16054551 | Msa0397110:intron | 40.0% |
| !!! | GGGGTCTATTTTAGAGTGAA+GGG | - | chr3_2:16054533-16054552 | Msa0397110:intron | 40.0% |
| AACAGGTCAGGAAGATTAAC+AGG | - | chr3_2:16054630-16054649 | Msa0397110:five_prime_UTR | 40.0% | |
| TCCATGTCCTTTGTCTTCTA+AGG | - | chr3_2:16054842-16054861 | Msa0397110:intron | 40.0% | |
| GCTTTCAAAGAGTTCCAAAG+AGG | - | chr3_2:16054866-16054885 | Msa0397110:intron | 40.0% | |
| !! | TCACATGAAGTGCTGAAACT+TGG | + | chr3_2:16055022-16055041 | None:intergenic | 40.0% |
| TGGTTTACACAACAACGAAC+AGG | + | chr3_2:16055353-16055372 | None:intergenic | 40.0% | |
| CTTTCTTGTACAACACAGTC+AGG | + | chr3_2:16055382-16055401 | None:intergenic | 40.0% | |
| TATTGCAGGTTTACTGTCCT+CGG | - | chr3_2:16055545-16055564 | Msa0397110:intron | 40.0% | |
| ! | ACACTTTTGCAGATGTTGTG+AGG | + | chr3_2:16055663-16055682 | None:intergenic | 40.0% |
| TCACAAGTCTTACAAACACG+TGG | + | chr3_2:16055868-16055887 | None:intergenic | 40.0% | |
| GAGAAAGAGGAAAGAGAGAG+GGG | + | chr3_2:16051837-16051856 | None:intergenic | 45.0% | |
| GGAGAAAGAGGAAAGAGAGA+GGG | + | chr3_2:16051838-16051857 | None:intergenic | 45.0% | |
| TGGAGAAAGAGGAAAGAGAG+AGG | + | chr3_2:16051839-16051858 | None:intergenic | 45.0% | |
| GAAGGAATTGCGATAGAGTG+TGG | + | chr3_2:16051859-16051878 | None:intergenic | 45.0% | |
| AGATCTGGTAAGAAGAGGGA+AGG | + | chr3_2:16051914-16051933 | None:intergenic | 45.0% | |
| GCGATAGATCTGGTAAGAAG+AGG | + | chr3_2:16051919-16051938 | None:intergenic | 45.0% | |
| GAATTTAGGGGCGATAGATC+TGG | + | chr3_2:16051929-16051948 | None:intergenic | 45.0% | |
| GATGAATCGATTGTGGTCAG+AGG | + | chr3_2:16051973-16051992 | None:intergenic | 45.0% | |
| ACCTCAACGATTTCATCGGA+AGG | + | chr3_2:16052144-16052163 | None:intergenic | 45.0% | |
| GCGAGAGAAAGGAAAGTGAA+TGG | - | chr3_2:16052878-16052897 | Msa0397110:intron | 45.0% | |
| GACGACCTGTAGTGTTAAAC+AGG | - | chr3_2:16052952-16052971 | Msa0397110:intron | 45.0% | |
| GCTCATGTAAACAGAGCTGA+AGG | - | chr3_2:16052985-16053004 | Msa0397110:intron | 45.0% | |
| TACATCAGAAGCAGCTATGG+AGG | - | chr3_2:16053028-16053047 | Msa0397110:intron | 45.0% | |
| GATCAAGTTAACAGAGCGAG+AGG | - | chr3_2:16053050-16053069 | Msa0397110:intron | 45.0% | |
| TTCAGCTGTAGCTCTTGCTT+TGG | + | chr3_2:16053531-16053550 | None:intergenic | 45.0% | |
| AAAGCAAGAGCTACAGCTGA+AGG | - | chr3_2:16053530-16053549 | Msa0397110:intron | 45.0% | |
| AAACTGCATAACCTCACCTC+TGG | + | chr3_2:16053596-16053615 | None:intergenic | 45.0% | |
| CTCTATCTGAGTGGAATGCT+AGG | + | chr3_2:16053701-16053720 | None:intergenic | 45.0% | |
| !! | TGGTTATGGGCTTGTTGCAA+AGG | - | chr3_2:16053820-16053839 | Msa0397110:intron | 45.0% |
| !! | GGTTATGGGCTTGTTGCAAA+GGG | - | chr3_2:16053821-16053840 | Msa0397110:intron | 45.0% |
| ! | AGCTTCTTGTTGTCCCTGAT+AGG | - | chr3_2:16054104-16054123 | Msa0397110:intron | 45.0% |
| ! | GTGAAGGAAATTGGCCTATC+AGG | + | chr3_2:16054121-16054140 | None:intergenic | 45.0% |
| GAAAGACGATGCAGAAATGG+AGG | - | chr3_2:16054272-16054291 | Msa0397110:intron | 45.0% | |
| GCCTTAGAAGACAAAGGACA+TGG | + | chr3_2:16054846-16054865 | None:intergenic | 45.0% | |
| !! | GAAAGCGCCTTAGAAGACAA+AGG | + | chr3_2:16054852-16054871 | None:intergenic | 45.0% |
| TTGCAAGGTCTGAAGAGAAG+TGG | + | chr3_2:16055063-16055082 | None:intergenic | 45.0% | |
| ACTTCTCTTCAGACCTTGCA+AGG | - | chr3_2:16055062-16055081 | Msa0397110:intron | 45.0% | |
| ! | GGTATACGAAGTACCTTGCA+AGG | + | chr3_2:16055078-16055097 | None:intergenic | 45.0% |
| ACAACACAGTCAGGATCCTT+TGG | + | chr3_2:16055373-16055392 | None:intergenic | 45.0% | |
| ! | ACATCTGCAAAAGTGTGTGC+CGG | - | chr3_2:16055667-16055686 | Msa0397110:five_prime_UTR | 45.0% |
| !! | TATATATTCATTATATATTT+GGG | - | chr3_2:16052570-16052589 | Msa0397110:CDS | 5.0% |
| AAGAGGAAAGAGAGAGGGGA+CGG | + | chr3_2:16051833-16051852 | None:intergenic | 50.0% | |
| GCGATAGAGTGTGGAGAAAG+AGG | + | chr3_2:16051850-16051869 | None:intergenic | 50.0% | |
| TTGTGGTCAGAGGTGAGCAA+AGG | + | chr3_2:16051963-16051982 | None:intergenic | 50.0% | |
| GCCTTCCGATGAAATCGTTG+AGG | - | chr3_2:16052140-16052159 | Msa0397110:intron | 50.0% | |
| !! | TTGCTGGTGATAGTGGTGAC+TGG | - | chr3_2:16052294-16052313 | Msa0397110:intron | 50.0% |
| TAGTGGTGACTGGTGAGCTT+AGG | - | chr3_2:16052304-16052323 | Msa0397110:intron | 50.0% | |
| !! | CATTAGGTGATGGGAAGAGG+TGG | - | chr3_2:16052847-16052866 | Msa0397110:intron | 50.0% |
| GTGTTAAACAGGAGAGAGGC+AGG | - | chr3_2:16052963-16052982 | Msa0397110:intron | 50.0% | |
| CGGCCTCACCTGAAAAAGAA+TGG | + | chr3_2:16053496-16053515 | None:intergenic | 50.0% | |
| AAAATGGAGGACCAGAGGTG+AGG | - | chr3_2:16053582-16053601 | Msa0397110:intron | 50.0% | |
| GCTTTGTGGCAACCTCACGT+TGG | + | chr3_2:16054248-16054267 | None:intergenic | 55.0% | |
| TCATCCACATGCGGGTAGCA+GGG | + | chr3_2:16054452-16054471 | None:intergenic | 55.0% | |
| TTCATCCACATGCGGGTAGC+AGG | + | chr3_2:16054453-16054472 | None:intergenic | 55.0% | |
| CATCCACATGCGGGTAGCAG+GGG | + | chr3_2:16054451-16054470 | None:intergenic | 60.0% | |
| AGGCCCCTGCTACCCGCATG+TGG | - | chr3_2:16054445-16054464 | Msa0397110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 16051715 | 16055912 | 16051715 | ID=Msa0397110;Name=Msa0397110 |
| chr3_2 | mRNA | 16051715 | 16055912 | 16051715 | ID=Msa0397110-mRNA-1;Parent=Msa0397110;Name=Msa0397110-mRNA-1;_AED=0.29;_eAED=0.29;_QI=484|0.75|0.8|1|0.75|0.6|5|310|85 |
| chr3_2 | exon | 16051715 | 16052074 | 16051715 | ID=Msa0397110-mRNA-1:exon:3635;Parent=Msa0397110-mRNA-1 |
| chr3_2 | exon | 16052544 | 16052631 | 16052544 | ID=Msa0397110-mRNA-1:exon:3634;Parent=Msa0397110-mRNA-1 |
| chr3_2 | exon | 16054029 | 16054120 | 16054029 | ID=Msa0397110-mRNA-1:exon:3633;Parent=Msa0397110-mRNA-1 |
| chr3_2 | exon | 16054556 | 16054774 | 16054556 | ID=Msa0397110-mRNA-1:exon:3632;Parent=Msa0397110-mRNA-1 |
| chr3_2 | exon | 16055620 | 16055912 | 16055620 | ID=Msa0397110-mRNA-1:exon:3631;Parent=Msa0397110-mRNA-1 |
| chr3_2 | five_prime_UTR | 16055620 | 16055912 | 16055620 | ID=Msa0397110-mRNA-1:five_prime_utr;Parent=Msa0397110-mRNA-1 |
| chr3_2 | five_prime_UTR | 16054584 | 16054774 | 16054584 | ID=Msa0397110-mRNA-1:five_prime_utr;Parent=Msa0397110-mRNA-1 |
| chr3_2 | CDS | 16054556 | 16054583 | 16054556 | ID=Msa0397110-mRNA-1:cds;Parent=Msa0397110-mRNA-1 |
| chr3_2 | CDS | 16054029 | 16054120 | 16054029 | ID=Msa0397110-mRNA-1:cds;Parent=Msa0397110-mRNA-1 |
| chr3_2 | CDS | 16052544 | 16052631 | 16052544 | ID=Msa0397110-mRNA-1:cds;Parent=Msa0397110-mRNA-1 |
| chr3_2 | CDS | 16052025 | 16052074 | 16052025 | ID=Msa0397110-mRNA-1:cds;Parent=Msa0397110-mRNA-1 |
| chr3_2 | three_prime_UTR | 16051715 | 16052024 | 16051715 | ID=Msa0397110-mRNA-1:three_prime_utr;Parent=Msa0397110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
