Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358510 | AFK33457.1 | 95.000 | 40 | 2 | 0 | 1 | 40 | 261 | 300 | 1.32e-14 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358510 | I3RZL5 | 95.000 | 40 | 2 | 0 | 1 | 40 | 261 | 300 | 6.32e-15 | 78.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047280 | Msa0358510 | 0.805622 | 1.221302e-49 | -8.615850e-47 |
| Msa0108870 | Msa0358510 | 0.804722 | 1.884839e-49 | -8.615850e-47 |
| Msa0139990 | Msa0358510 | 0.800643 | 1.308853e-48 | -8.615850e-47 |
| Msa0337510 | Msa0358510 | 0.818268 | 2.141633e-52 | -8.615850e-47 |
| Msa0358510 | Msa0397110 | 0.873851 | 1.067527e-67 | -8.615850e-47 |
| Msa0358510 | Msa0414020 | 0.802172 | 6.363522e-49 | -8.615850e-47 |
| Msa0358510 | Msa0431770 | 0.816633 | 5.001554e-52 | -8.615850e-47 |
| Msa0358510 | Msa0534080 | 0.836848 | 7.355439e-57 | -8.615850e-47 |
| Msa0358510 | Msa0578090 | 0.803268 | 3.780219e-49 | -8.615850e-47 |
| Msa0358510 | Msa0625790 | 0.808394 | 3.164754e-50 | -8.615850e-47 |
| Msa0358510 | Msa0704800 | 0.804126 | 2.508768e-49 | -8.615850e-47 |
| Msa0358510 | Msa0822170 | 0.803424 | 3.509585e-49 | -8.615850e-47 |
| Msa0358510 | Msa0921870 | 0.805631 | 1.216132e-49 | -8.615850e-47 |
| Msa0358510 | Msa0928120 | 0.813335 | 2.696160e-51 | -8.615850e-47 |
| Msa0358510 | Msa0939570 | 0.804531 | 2.066227e-49 | -8.615850e-47 |
| Msa0358510 | Msa1057420 | 0.803412 | 3.529738e-49 | -8.615850e-47 |
| Msa0358510 | Msa1128990 | 0.804708 | 1.897734e-49 | -8.615850e-47 |
| Msa0358510 | Msa1192850 | 0.817564 | 3.088479e-52 | -8.615850e-47 |
| Msa0358510 | Msa1253810 | 0.808577 | 2.893137e-50 | -8.615850e-47 |
| Msa0358510 | Msa1296300 | 0.825383 | 4.829798e-54 | -8.615850e-47 |
| Msa0358510 | Msa1323990 | 0.833035 | 6.718619e-56 | -8.615850e-47 |
| Msa0358510 | Msa1325930 | 0.809051 | 2.290783e-50 | -8.615850e-47 |
| Msa0358510 | Msa1327490 | 0.815495 | 8.977973e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358510 | MtrunA17_Chr3g0128271 | 95.000 | 40 | 2 | 0 | 1 | 40 | 261 | 300 | 1.29e-18 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358510 | AT5G54100.1 | 70.000 | 40 | 12 | 0 | 1 | 40 | 301 | 340 | 8.47e-12 | 59.3 |
| Msa0358510 | AT4G27585.1 | 71.053 | 38 | 11 | 0 | 3 | 40 | 260 | 297 | 6.68e-11 | 57.0 |
Find 63 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAATATTTGGTGAAAAT+TGG | 0.102914 | 3_1:+43498381 | None:intergenic |
| AAATTTGTAGTCTGTGTTTA+TGG | 0.103638 | 3_1:-43497254 | Msa0358510:five_prime_UTR |
| AGGTGAAACAATTTGAATTT+AGG | 0.145343 | 3_1:+43498239 | None:intergenic |
| AGCTCTTGCTTTGGCAATTA+TGG | 0.210969 | 3_1:+43496660 | None:intergenic |
| TGGTGAAAATTGGGAAAATT+TGG | 0.213372 | 3_1:+43498391 | None:intergenic |
| GGTGAAACAATTTGAATTTA+GGG | 0.254793 | 3_1:+43498240 | None:intergenic |
| GTAGATTAGATCTGAATATT+TGG | 0.274522 | 3_1:+43498371 | None:intergenic |
| GAAGGAATTGCGATAGAGTT+TGG | 0.284084 | 3_1:+43498323 | None:intergenic |
| GTTTGTAAGACTTGTGAATT+TGG | 0.296225 | 3_1:-43494308 | Msa0358510:three_prime_UTR |
| TTTGGAATTTCGGTTGTTAT+AGG | 0.309361 | 3_1:+43498449 | None:intergenic |
| CTGAATATTTGGTGAAAATT+GGG | 0.314466 | 3_1:+43498382 | None:intergenic |
| TCACAAGCCCTAAAAGAAAA+TGG | 0.332121 | 3_1:-43496613 | Msa0358510:CDS |
| TCCTATAGCAACGAACGATT+TGG | 0.358877 | 3_1:+43498431 | None:intergenic |
| CTTGGTAGTTTGATTCTTCA+AGG | 0.360717 | 3_1:+43495178 | None:intergenic |
| TTCAGCTGTAGCTCTTGCTT+TGG | 0.375315 | 3_1:+43496651 | None:intergenic |
| CAACGAACGATTTGGAATTT+CGG | 0.376096 | 3_1:+43498439 | None:intergenic |
| GACGACCTGTAGTGTTAAAC+AGG | 0.396052 | 3_1:-43497227 | Msa0358510:five_prime_UTR |
| TGAACAGGAGAGAAGATAGA+AGG | 0.400148 | 3_1:+43498305 | None:intergenic |
| TCCAAATCGTTCGTTGCTAT+AGG | 0.404900 | 3_1:-43498432 | Msa0358510:five_prime_UTR |
| GCGATAGAGTTTGGAGAAAG+AGG | 0.413663 | 3_1:+43498332 | None:intergenic |
| GAATTTAGGGGCGATAGATC+TGG | 0.436868 | 3_1:+43498253 | None:intergenic |
| ATTCATCTTTCACTGATCTC+AGG | 0.442392 | 3_1:-43498193 | Msa0358510:intron |
| GTGTTAAACAGGAGAGAGGC+AGG | 0.447372 | 3_1:-43497216 | Msa0358510:five_prime_UTR |
| AACTATTGATGACTTAAGCT+TGG | 0.453768 | 3_1:+43494405 | None:intergenic |
| TTTCATTAGGTGATGGGAAG+AGG | 0.468500 | 3_1:-43497335 | Msa0358510:intron |
| GCGAGAGAAAGGAAAGTGAA+TGG | 0.473955 | 3_1:-43497301 | Msa0358510:five_prime_UTR |
| CAATCTTTGAATCATATTTG+AGG | 0.477529 | 3_1:+43494489 | None:intergenic |
| TATTGCAGGTTTGCTGTCCT+CGG | 0.482135 | 3_1:-43494634 | Msa0358510:intron |
| TCACATGAAGTGCTGAAACT+TGG | 0.487346 | 3_1:+43495160 | None:intergenic |
| AAGAGGAAAGAGAGAGGGGA+CGG | 0.497448 | 3_1:+43498349 | None:intergenic |
| AAGGAAAGTGAATGGTTACT+TGG | 0.498792 | 3_1:-43497293 | Msa0358510:five_prime_UTR |
| TCGGATGACAAGAATAAGAA+TGG | 0.501204 | 3_1:-43494615 | Msa0358510:CDS |
| TGGAGAAAGAGGAAAGAGAG+AGG | 0.503587 | 3_1:+43498343 | None:intergenic |
| GTTCTATAAGCATAAGAGCT+TGG | 0.516550 | 3_1:-43494370 | Msa0358510:three_prime_UTR |
| TTAAGAAACTGGAATAGAGA+AGG | 0.519529 | 3_1:+43494457 | None:intergenic |
| GGAGAAAGAGGAAAGAGAGA+GGG | 0.520530 | 3_1:+43498344 | None:intergenic |
| GACTACAAATTTGAATGACA+TGG | 0.524139 | 3_1:+43497265 | None:intergenic |
| TCTTACATCAGAAGCAGCTA+TGG | 0.525545 | 3_1:-43497154 | Msa0358510:exon |
| GAGCACAATGAATAGACATC+TGG | 0.528553 | 3_1:-43494591 | Msa0358510:exon |
| TCTCTCCTGTTTAACACTAC+AGG | 0.531985 | 3_1:+43497222 | None:intergenic |
| GAGAAAGAGGAAAGAGAGAG+GGG | 0.541836 | 3_1:+43498345 | None:intergenic |
| CATTAGGTGATGGGAAGAGG+TGG | 0.546609 | 3_1:-43497332 | Msa0358510:intron |
| ACTTCTCTTCAGACCTTGCA+AGG | 0.566682 | 3_1:-43495117 | Msa0358510:intron |
| GTGAAACAATTTGAATTTAG+GGG | 0.567705 | 3_1:+43498241 | None:intergenic |
| ATTCTTATTCTTGTCATCCG+AGG | 0.578067 | 3_1:+43494617 | None:intergenic |
| CGATAGATCTGGTAAGAAGA+GGG | 0.587782 | 3_1:+43498264 | None:intergenic |
| GCTCATGTAAACAGAGCTGA+AGG | 0.589569 | 3_1:-43497194 | Msa0358510:five_prime_UTR |
| TACATCAGAAGCAGCTATGG+AGG | 0.593241 | 3_1:-43497151 | Msa0358510:exon |
| AAAGCAAGAGCTACAGCTGA+AGG | 0.595491 | 3_1:-43496649 | Msa0358510:CDS |
| GCGATAGATCTGGTAAGAAG+AGG | 0.603832 | 3_1:+43498263 | None:intergenic |
| TTGCAAGGTCTGAAGAGAAG+TGG | 0.616653 | 3_1:+43495119 | None:intergenic |
| AGTGAAAGATGAATCGATTG+TGG | 0.621029 | 3_1:+43498202 | None:intergenic |
| GATGAATCGATTGTGGTCAG+AGG | 0.623804 | 3_1:+43498209 | None:intergenic |
| GATCAAGTTAACAGAGCGAG+AGG | 0.623847 | 3_1:-43497129 | Msa0358510:intron |
| GGTATACGAAGTACCTTGCA+AGG | 0.625171 | 3_1:+43495104 | None:intergenic |
| ACTACAAATTTGAATGACAT+GGG | 0.626703 | 3_1:+43497266 | None:intergenic |
| AGATCTGGTAAGAAGAGGGA+AGG | 0.626755 | 3_1:+43498268 | None:intergenic |
| TGTAGTGTTAAACAGGAGAG+AGG | 0.650076 | 3_1:-43497220 | Msa0358510:five_prime_UTR |
| TTGTGGTCAGAGGTGAGCAA+AGG | 0.650911 | 3_1:+43498219 | None:intergenic |
| ACATCTGCAAAAGTGTGTGT+CGG | 0.653505 | 3_1:-43494512 | Msa0358510:three_prime_UTR |
| AAAAGAAAATGGAGGACCAG+AGG | 0.656444 | 3_1:-43496602 | Msa0358510:intron |
| TCACAAGTCTTACAAACACG+TGG | 0.668775 | 3_1:+43494314 | None:intergenic |
| CAAGCCCTAAAAGAAAATGG+AGG | 0.728545 | 3_1:-43496610 | Msa0358510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTCTAGAAAAAT+TGG | - | chr3_1:43494762-43494781 | Msa0358510:intron | 10.0% |
| !!! | AACAATATTTTGATTTTTTT+GGG | - | chr3_1:43494839-43494858 | Msa0358510:intron | 10.0% |
| !! | CAAATATATAATGAATATAT+AGG | + | chr3_1:43495145-43495164 | None:intergenic | 10.0% |
| !! | CTATATATTCATTATATATT+TGG | - | chr3_1:43495143-43495162 | Msa0358510:CDS | 10.0% |
| !! | TTAATTACATGTTTATATAT+TGG | - | chr3_1:43495647-43495666 | Msa0358510:intron | 10.0% |
| !!! | ATTATTTTTATTTTTTGAAG+AGG | - | chr3_1:43495840-43495859 | Msa0358510:intron | 10.0% |
| !!! | TATAGAATTTATCTTTTATT+TGG | - | chr3_1:43496905-43496924 | Msa0358510:intron | 10.0% |
| !!! | ATAGAATTTATCTTTTATTT+GGG | - | chr3_1:43496906-43496925 | Msa0358510:intron | 10.0% |
| !!! | ATTTAAATTTAAACTTGTTA+GGG | - | chr3_1:43496945-43496964 | Msa0358510:intron | 10.0% |
| !! | TTAACTATTATATAATCTTC+TGG | - | chr3_1:43494801-43494820 | Msa0358510:intron | 15.0% |
| !!! | CAACAATATTTTGATTTTTT+TGG | - | chr3_1:43494838-43494857 | Msa0358510:intron | 15.0% |
| !!! | ACAATATTTTGATTTTTTTG+GGG | - | chr3_1:43494840-43494859 | Msa0358510:intron | 15.0% |
| !!! | TAATTGTAATTTTCTTATTC+TGG | - | chr3_1:43496578-43496597 | Msa0358510:intron | 15.0% |
| !!! | GATTTAAATTTAAACTTGTT+AGG | - | chr3_1:43496944-43496963 | Msa0358510:intron | 15.0% |
| !!! | TTATATTTTTAATACCTCTT+TGG | + | chr3_1:43497457-43497476 | None:intergenic | 15.0% |
| !!! | GAGGTATTAAAAATATAAAT+TGG | - | chr3_1:43497459-43497478 | Msa0358510:intron | 15.0% |
| !!! | TTCTTTTTTTATTATAAGAG+TGG | - | chr3_1:43497540-43497559 | Msa0358510:intron | 15.0% |
| !! | AAGTATATTACAATTCTTAA+TGG | + | chr3_1:43498049-43498068 | None:intergenic | 15.0% |
| !!! | TTATTTGTTTGTTATGACAA+TGG | - | chr3_1:43495116-43495135 | Msa0358510:intron | 20.0% |
| !! | ACATTAACTAAAACATTTAG+TGG | + | chr3_1:43495291-43495310 | None:intergenic | 20.0% |
| !! | GAAATAATTATTAGTGACAA+TGG | - | chr3_1:43495341-43495360 | Msa0358510:intron | 20.0% |
| !! | GAATAATATTGTCAAAGAAA+TGG | + | chr3_1:43495682-43495701 | None:intergenic | 20.0% |
| !! | TAAATTGAACACCAAATTTA+TGG | + | chr3_1:43495936-43495955 | None:intergenic | 20.0% |
| !!! | ATAAATTTGGTGTTCAATTT+AGG | - | chr3_1:43495935-43495954 | Msa0358510:intron | 20.0% |
| !!! | TAAATTTGGTGTTCAATTTA+GGG | - | chr3_1:43495936-43495955 | Msa0358510:intron | 20.0% |
| !! | TTAAAATTTCCAAGTATCAT+TGG | + | chr3_1:43496241-43496260 | None:intergenic | 20.0% |
| !! | CATTGAATGAATTCTAATAT+AGG | + | chr3_1:43496314-43496333 | None:intergenic | 20.0% |
| !! | CATATTCAATAATTGGTTAT+GGG | - | chr3_1:43496381-43496400 | Msa0358510:intron | 20.0% |
| !!! | ATTCTATTTCTAGTAAAACT+AGG | + | chr3_1:43496725-43496744 | None:intergenic | 20.0% |
| !! | TATGATTGTTCAGTAAAAAA+AGG | - | chr3_1:43497086-43497105 | Msa0358510:intron | 20.0% |
| !! | ATGATTGTTCAGTAAAAAAA+GGG | - | chr3_1:43497087-43497106 | Msa0358510:intron | 20.0% |
| !! | TTGTGGTTTAAATTATTGTT+TGG | - | chr3_1:43497179-43497198 | Msa0358510:five_prime_UTR | 20.0% |
| !! | TAAATTATTGTTTGGTTAAC+AGG | - | chr3_1:43497187-43497206 | Msa0358510:five_prime_UTR | 20.0% |
| !!! | TTGTTGCTTTCATATTTTAT+TGG | - | chr3_1:43497266-43497285 | Msa0358510:five_prime_UTR | 20.0% |
| !!! | AAGACATGATACATATTTTT+TGG | - | chr3_1:43497341-43497360 | Msa0358510:intron | 20.0% |
| !! | AATTGTAATATACTTGTTCA+GGG | - | chr3_1:43498054-43498073 | Msa0358510:intron | 20.0% |
| !! | GAAATTGTAATTATTATTGC+AGG | - | chr3_1:43498105-43498124 | Msa0358510:intron | 20.0% |
| !!! | ATCATATTTTCTTAAGAAAC+TGG | + | chr3_1:43498310-43498329 | None:intergenic | 20.0% |
| !! | CTGAATATTTGGTGAAAATT+GGG | + | chr3_1:43494374-43494393 | None:intergenic | 25.0% |
| !! | TCTGAATATTTGGTGAAAAT+TGG | + | chr3_1:43494375-43494394 | None:intergenic | 25.0% |
| ! | GTAGATTAGATCTGAATATT+TGG | + | chr3_1:43494385-43494404 | None:intergenic | 25.0% |
| ! | GTGAAACAATTTGAATTTAG+GGG | + | chr3_1:43494515-43494534 | None:intergenic | 25.0% |
| ! | GGTGAAACAATTTGAATTTA+GGG | + | chr3_1:43494516-43494535 | None:intergenic | 25.0% |
| ! | AGGTGAAACAATTTGAATTT+AGG | + | chr3_1:43494517-43494536 | None:intergenic | 25.0% |
| ! | TGCTTAATAGTGTTCAAATT+GGG | - | chr3_1:43494618-43494637 | Msa0358510:CDS | 25.0% |
| ! | TCAATACTAGATGTAGATTT+AGG | - | chr3_1:43494660-43494679 | Msa0358510:intron | 25.0% |
| ! | CAATACTAGATGTAGATTTA+GGG | - | chr3_1:43494661-43494680 | Msa0358510:intron | 25.0% |
| ! | TATATCTGGTTGAATGAAAA+AGG | - | chr3_1:43494911-43494930 | Msa0358510:intron | 25.0% |
| ! | TGCTAAAATTGAATAGTCAA+AGG | + | chr3_1:43494962-43494981 | None:intergenic | 25.0% |
| ! | ACTACAAATTTGAATGACAT+GGG | + | chr3_1:43495490-43495509 | None:intergenic | 25.0% |
| ! | AAATTTGTAGTCTGTGTTTA+TGG | - | chr3_1:43495499-43495518 | Msa0358510:intron | 25.0% |
| ! | GCAAAGATGATTAATTAGAT+TGG | - | chr3_1:43495864-43495883 | Msa0358510:intron | 25.0% |
| ! | AAGCTTAAATTGATAGGATA+AGG | + | chr3_1:43495981-43496000 | None:intergenic | 25.0% |
| ! | TCAAACAAGCTTAAATTGAT+AGG | + | chr3_1:43495987-43496006 | None:intergenic | 25.0% |
| !!! | AAGGTTTTTAAGATATCAAG+TGG | + | chr3_1:43496034-43496053 | None:intergenic | 25.0% |
| !! | GAATGGTGTTAAGTATTATA+AGG | + | chr3_1:43496053-43496072 | None:intergenic | 25.0% |
| !!! | TTTTGTTTACCAATGATACT+TGG | - | chr3_1:43496229-43496248 | Msa0358510:intron | 25.0% |
| !!! | GAATTTTTTGCTTAAGACAT+TGG | - | chr3_1:43496353-43496372 | Msa0358510:intron | 25.0% |
| ! | CCATAACCAATTATTGAATA+TGG | + | chr3_1:43496383-43496402 | None:intergenic | 25.0% |
| ! | CCATATTCAATAATTGGTTA+TGG | - | chr3_1:43496380-43496399 | Msa0358510:intron | 25.0% |
| ! | TTATTAAATCCAAAGTCATG+AGG | + | chr3_1:43496436-43496455 | None:intergenic | 25.0% |
| !! | TGTAATTTTCTTATTCTGGT+TGG | - | chr3_1:43496582-43496601 | Msa0358510:intron | 25.0% |
| ! | AAAAGGAAATCATCAAACAA+GGG | + | chr3_1:43496876-43496895 | None:intergenic | 25.0% |
| ! | ATTCTATACTGTAAGACAAA+AGG | + | chr3_1:43496893-43496912 | None:intergenic | 25.0% |
| ! | ACAATCATAAGTCAAATTGT+TGG | + | chr3_1:43497075-43497094 | None:intergenic | 25.0% |
| ! | TGATTGTTCAGTAAAAAAAG+GGG | - | chr3_1:43497088-43497107 | Msa0358510:intron | 25.0% |
| ! | TAAAAGCTGCTATTAGATAT+TGG | - | chr3_1:43497133-43497152 | Msa0358510:CDS | 25.0% |
| ! | AAAAGCTGCTATTAGATATT+GGG | - | chr3_1:43497134-43497153 | Msa0358510:CDS | 25.0% |
| !!! | CTGCTTTTTTTTGTTTTTTG+TGG | - | chr3_1:43497162-43497181 | Msa0358510:five_prime_UTR | 25.0% |
| ! | TGAAAGCAACAAGTAAAAAA+AGG | + | chr3_1:43497258-43497277 | None:intergenic | 25.0% |
| ! | GATTGACAAGATAATGAAAT+GGG | + | chr3_1:43497315-43497334 | None:intergenic | 25.0% |
| ! | TGATTGACAAGATAATGAAA+TGG | + | chr3_1:43497316-43497335 | None:intergenic | 25.0% |
| ! | AAATATGACTGAGATGATAA+CGG | - | chr3_1:43497769-43497788 | Msa0358510:intron | 25.0% |
| !!! | ATGTTACACCTACTTTTAAA+TGG | - | chr3_1:43497797-43497816 | Msa0358510:intron | 25.0% |
| !!! | TTGTTGATGAGATTTCTTTT+AGG | - | chr3_1:43497832-43497851 | Msa0358510:intron | 25.0% |
| ! | TACAATAACAAAACACAACA+GGG | + | chr3_1:43497874-43497893 | None:intergenic | 25.0% |
| ! | ATACAATAACAAAACACAAC+AGG | + | chr3_1:43497875-43497894 | None:intergenic | 25.0% |
| ! | AGAAAAATAGCAGATTATCA+TGG | + | chr3_1:43498002-43498021 | None:intergenic | 25.0% |
| ! | GAATTGTAATATACTTGTTC+AGG | - | chr3_1:43498053-43498072 | Msa0358510:intron | 25.0% |
| ! | CAATCTTTGAATCATATTTG+AGG | + | chr3_1:43498267-43498286 | None:intergenic | 25.0% |
| ! | TTTGGAATTTCGGTTGTTAT+AGG | + | chr3_1:43494307-43494326 | None:intergenic | 30.0% |
| TGGTGAAAATTGGGAAAATT+TGG | + | chr3_1:43494365-43494384 | None:intergenic | 30.0% | |
| ! | GTTTTCTGAATCTTTTGAAC+AGG | + | chr3_1:43494466-43494485 | None:intergenic | 30.0% |
| CTGCTTAATAGTGTTCAAAT+TGG | - | chr3_1:43494617-43494636 | Msa0358510:CDS | 30.0% | |
| ATTGGGTCTGTTATTAGAAA+AGG | - | chr3_1:43494635-43494654 | Msa0358510:intron | 30.0% | |
| !!! | TTTTTTTGGGGAAAATTTGC+TGG | - | chr3_1:43494852-43494871 | Msa0358510:intron | 30.0% |
| TAAATATAGACAAAACGCAC+AGG | + | chr3_1:43495033-43495052 | None:intergenic | 30.0% | |
| ! | GAAAAAGCACAAACTCTTTA+GGG | + | chr3_1:43495402-43495421 | None:intergenic | 30.0% |
| ! | TGAAAAAGCACAAACTCTTT+AGG | + | chr3_1:43495403-43495422 | None:intergenic | 30.0% |
| !!! | AGAGTTTGTGCTTTTTCATT+AGG | - | chr3_1:43495405-43495424 | Msa0358510:intron | 30.0% |
| GACTACAAATTTGAATGACA+TGG | + | chr3_1:43495491-43495510 | None:intergenic | 30.0% | |
| TTGTCAAAGAAATGGAAGTT+GGG | + | chr3_1:43495674-43495693 | None:intergenic | 30.0% | |
| ATTGTCAAAGAAATGGAAGT+TGG | + | chr3_1:43495675-43495694 | None:intergenic | 30.0% | |
| ATTGAACACCAAATTTATGG+TGG | + | chr3_1:43495933-43495952 | None:intergenic | 30.0% | |
| TGGAACTAACAATGTAGTAA+GGG | + | chr3_1:43496014-43496033 | None:intergenic | 30.0% | |
| ! | ACTTAACACCATTCTTTTTC+AGG | - | chr3_1:43496059-43496078 | Msa0358510:intron | 30.0% |
| TTCAATGTCATTGTCATATG+TGG | - | chr3_1:43496327-43496346 | Msa0358510:intron | 30.0% | |
| GGATTGCCATATTCAATAAT+TGG | - | chr3_1:43496374-43496393 | Msa0358510:intron | 30.0% | |
| AAAACTAGGAACATTTGTGA+AGG | + | chr3_1:43496711-43496730 | None:intergenic | 30.0% | |
| TAATGTCACTAGTTAAACAC+AGG | + | chr3_1:43496763-43496782 | None:intergenic | 30.0% | |
| TTTCACATCTACTTGAGTAA+AGG | - | chr3_1:43496784-43496803 | Msa0358510:intron | 30.0% | |
| CAAAAGGAAATCATCAAACA+AGG | + | chr3_1:43496877-43496896 | None:intergenic | 30.0% | |
| !! | AAATTTAAACTTGTTAGGGC+TGG | - | chr3_1:43496949-43496968 | Msa0358510:intron | 30.0% |
| CTATATAGGCAATTCAAAGT+AGG | - | chr3_1:43496974-43496993 | Msa0358510:intron | 30.0% | |
| TCAAAATATTCATCCACATG+CGG | + | chr3_1:43497035-43497054 | None:intergenic | 30.0% | |
| AAAGCTGCTATTAGATATTG+GGG | - | chr3_1:43497135-43497154 | Msa0358510:CDS | 30.0% | |
| ATGGACATCATTGTATAAAC+TGG | + | chr3_1:43497401-43497420 | None:intergenic | 30.0% | |
| AATATGACTGAGATGATAAC+GGG | - | chr3_1:43497770-43497789 | Msa0358510:intron | 30.0% | |
| !!! | GTTTTGTTATTGTATGACGT+AGG | - | chr3_1:43497880-43497899 | Msa0358510:intron | 30.0% |
| TTAAGAAACTGGAATAGAGA+AGG | + | chr3_1:43498299-43498318 | None:intergenic | 30.0% | |
| ! | AACTATTGATGACTTAAGCT+TGG | + | chr3_1:43498351-43498370 | None:intergenic | 30.0% |
| GTTTGTAAGACTTGTGAATT+TGG | - | chr3_1:43498445-43498464 | Msa0358510:five_prime_UTR | 30.0% | |
| ! | CAACGAACGATTTGGAATTT+CGG | + | chr3_1:43494317-43494336 | None:intergenic | 35.0% |
| AGTGAAAGATGAATCGATTG+TGG | + | chr3_1:43494554-43494573 | None:intergenic | 35.0% | |
| ATTCATCTTTCACTGATCTC+AGG | - | chr3_1:43494560-43494579 | Msa0358510:three_prime_UTR | 35.0% | |
| AACAACCTCAACGATTTCAT+CGG | + | chr3_1:43494722-43494741 | None:intergenic | 35.0% | |
| !!! | TGTGCTTTTTCATTAGGTGA+TGG | - | chr3_1:43495411-43495430 | Msa0358510:intron | 35.0% |
| !!! | GTGCTTTTTCATTAGGTGAT+GGG | - | chr3_1:43495412-43495431 | Msa0358510:intron | 35.0% |
| AAGGAAAGTGAATGGTTACT+TGG | - | chr3_1:43495460-43495479 | Msa0358510:intron | 35.0% | |
| GTAACATGCCACCATAAATT+TGG | - | chr3_1:43495922-43495941 | Msa0358510:intron | 35.0% | |
| GTGGAACTAACAATGTAGTA+AGG | + | chr3_1:43496015-43496034 | None:intergenic | 35.0% | |
| TCACAAGCCCTAAAAGAAAA+TGG | - | chr3_1:43496140-43496159 | Msa0358510:intron | 35.0% | |
| ! | TGGTCCTCCATTTTCTTTTA+GGG | + | chr3_1:43496150-43496169 | None:intergenic | 35.0% |
| ! | AACATATAGCTCTATCTGAG+TGG | + | chr3_1:43496284-43496303 | None:intergenic | 35.0% |
| ACTGTAATTCCTCATGACTT+TGG | - | chr3_1:43496424-43496443 | Msa0358510:intron | 35.0% | |
| ! | TTCTTATTCTGGTTGGCATA+TGG | - | chr3_1:43496589-43496608 | Msa0358510:intron | 35.0% |
| GGAACATTTGTGAAGGAAAT+TGG | + | chr3_1:43496704-43496723 | None:intergenic | 35.0% | |
| ! | ATCGTCTTTCAATAGCTTTG+TGG | + | chr3_1:43496836-43496855 | None:intergenic | 35.0% |
| ATTGAAAGACGATGCAGAAA+TGG | - | chr3_1:43496843-43496862 | Msa0358510:intron | 35.0% | |
| TGTGAAAGTGAATGAGTAGT+AGG | - | chr3_1:43496999-43497018 | Msa0358510:intron | 35.0% | |
| CAAAATATTCATCCACATGC+GGG | + | chr3_1:43497034-43497053 | None:intergenic | 35.0% | |
| TATTGTTTGGTTAACAGGTC+AGG | - | chr3_1:43497192-43497211 | Msa0358510:five_prime_UTR | 35.0% | |
| GAAATGGGAACATAATCATC+TGG | + | chr3_1:43497300-43497319 | None:intergenic | 35.0% | |
| ! | CTTGGTAGTTTGATTCTTCA+AGG | + | chr3_1:43497578-43497597 | None:intergenic | 35.0% |
| TCGTATACCACTATCATTTG+AGG | - | chr3_1:43497663-43497682 | Msa0358510:intron | 35.0% | |
| CGTATACCACTATCATTTGA+GGG | - | chr3_1:43497664-43497683 | Msa0358510:intron | 35.0% | |
| AATAGTCCCTCAAATGATAG+TGG | + | chr3_1:43497673-43497692 | None:intergenic | 35.0% | |
| ! | CGCTTATGCCATTTAAAAGT+AGG | + | chr3_1:43497808-43497827 | None:intergenic | 35.0% |
| TTCGTTGTTGTGTAAACCAA+AGG | - | chr3_1:43497928-43497947 | Msa0358510:intron | 35.0% | |
| ATTCTTATTCTTGTCATCCG+AGG | + | chr3_1:43498139-43498158 | None:intergenic | 35.0% | |
| TCGGATGACAAGAATAAGAA+TGG | - | chr3_1:43498138-43498157 | Msa0358510:intron | 35.0% | |
| GTTCTATAAGCATAAGAGCT+TGG | - | chr3_1:43498383-43498402 | Msa0358510:five_prime_UTR | 35.0% | |
| TCCAAATCGTTCGTTGCTAT+AGG | - | chr3_1:43494321-43494340 | Msa0358510:three_prime_UTR | 40.0% | |
| TCCTATAGCAACGAACGATT+TGG | + | chr3_1:43494325-43494344 | None:intergenic | 40.0% | |
| GAAGGAATTGCGATAGAGTT+TGG | + | chr3_1:43494433-43494452 | None:intergenic | 40.0% | |
| TGAACAGGAGAGAAGATAGA+AGG | + | chr3_1:43494451-43494470 | None:intergenic | 40.0% | |
| CGATAGATCTGGTAAGAAGA+GGG | + | chr3_1:43494492-43494511 | None:intergenic | 40.0% | |
| ATCGGAAGGCAAGTTCAAAA+CGG | + | chr3_1:43494704-43494723 | None:intergenic | 40.0% | |
| !! | GGAAAATTTGCTGGTGATAG+TGG | - | chr3_1:43494861-43494880 | Msa0358510:intron | 40.0% |
| TAGGAGCAATCTGCTATATC+TGG | - | chr3_1:43494897-43494916 | Msa0358510:intron | 40.0% | |
| !! | TTTCATTAGGTGATGGGAAG+AGG | - | chr3_1:43495418-43495437 | Msa0358510:intron | 40.0% |
| ! | TGGTAGTTTTTGCGAGAGAA+AGG | - | chr3_1:43495441-43495460 | Msa0358510:intron | 40.0% |
| TCTCTCCTGTTTAACACTAC+AGG | + | chr3_1:43495534-43495553 | None:intergenic | 40.0% | |
| TGTAGTGTTAAACAGGAGAG+AGG | - | chr3_1:43495533-43495552 | Msa0358510:intron | 40.0% | |
| TCTTACATCAGAAGCAGCTA+TGG | - | chr3_1:43495599-43495618 | Msa0358510:intron | 40.0% | |
| ! | AGATAGCTTTTGACATCTGC+TGG | - | chr3_1:43495706-43495725 | Msa0358510:intron | 40.0% |
| !!! | ACACCATTCTTTTTCAGGTG+AGG | - | chr3_1:43496064-43496083 | Msa0358510:intron | 40.0% |
| AGCTCTTGCTTTGGCAATTA+TGG | + | chr3_1:43496096-43496115 | None:intergenic | 40.0% | |
| CAAGCCCTAAAAGAAAATGG+AGG | - | chr3_1:43496143-43496162 | Msa0358510:intron | 40.0% | |
| ! | CTGGTCCTCCATTTTCTTTT+AGG | + | chr3_1:43496151-43496170 | None:intergenic | 40.0% |
| AAAAGAAAATGGAGGACCAG+AGG | - | chr3_1:43496151-43496170 | Msa0358510:intron | 40.0% | |
| ATGTCATTGTCATATGTGGC+TGG | - | chr3_1:43496331-43496350 | Msa0358510:intron | 40.0% | |
| ! | TGGCATATGGTTTTCATACG+AGG | - | chr3_1:43496602-43496621 | Msa0358510:intron | 40.0% |
| ! | TGAAGGAAATTGGCCTATCA+GGG | + | chr3_1:43496694-43496713 | None:intergenic | 40.0% |
| TTGAATCTCTTTCCAACGTG+AGG | - | chr3_1:43496807-43496826 | Msa0358510:intron | 40.0% | |
| TGTTAGGGCTGGAACTATAT+AGG | - | chr3_1:43496960-43496979 | Msa0358510:intron | 40.0% | |
| !!! | AGGGGTCTATTTTAGAGTGA+AGG | - | chr3_1:43497106-43497125 | Msa0358510:intron | 40.0% |
| !!! | GGGGTCTATTTTAGAGTGAA+GGG | - | chr3_1:43497107-43497126 | Msa0358510:intron | 40.0% |
| AACAGGTCAGGAAGATTAAC+AGG | - | chr3_1:43497204-43497223 | Msa0358510:five_prime_UTR | 40.0% | |
| TCCATGTCCTTTGTCTTCTA+AGG | - | chr3_1:43497416-43497435 | Msa0358510:intron | 40.0% | |
| GCTTTCAAAGAGTTCCAAAG+AGG | - | chr3_1:43497440-43497459 | Msa0358510:intron | 40.0% | |
| !! | TCACATGAAGTGCTGAAACT+TGG | + | chr3_1:43497596-43497615 | None:intergenic | 40.0% |
| TGGTTTACACAACAACGAAC+AGG | + | chr3_1:43497927-43497946 | None:intergenic | 40.0% | |
| CTTTCTTGTACAACACAGTC+AGG | + | chr3_1:43497956-43497975 | None:intergenic | 40.0% | |
| GAGCACAATGAATAGACATC+TGG | - | chr3_1:43498162-43498181 | Msa0358510:intron | 40.0% | |
| ! | ACACTTTTGCAGATGTTGTG+AGG | + | chr3_1:43498237-43498256 | None:intergenic | 40.0% |
| ! | ACATCTGCAAAAGTGTGTGT+CGG | - | chr3_1:43498241-43498260 | Msa0358510:five_prime_UTR | 40.0% |
| TCACAAGTCTTACAAACACG+TGG | + | chr3_1:43498442-43498461 | None:intergenic | 40.0% | |
| GAGAAAGAGGAAAGAGAGAG+GGG | + | chr3_1:43494411-43494430 | None:intergenic | 45.0% | |
| GGAGAAAGAGGAAAGAGAGA+GGG | + | chr3_1:43494412-43494431 | None:intergenic | 45.0% | |
| TGGAGAAAGAGGAAAGAGAG+AGG | + | chr3_1:43494413-43494432 | None:intergenic | 45.0% | |
| GCGATAGAGTTTGGAGAAAG+AGG | + | chr3_1:43494424-43494443 | None:intergenic | 45.0% | |
| AGATCTGGTAAGAAGAGGGA+AGG | + | chr3_1:43494488-43494507 | None:intergenic | 45.0% | |
| GCGATAGATCTGGTAAGAAG+AGG | + | chr3_1:43494493-43494512 | None:intergenic | 45.0% | |
| GAATTTAGGGGCGATAGATC+TGG | + | chr3_1:43494503-43494522 | None:intergenic | 45.0% | |
| GATGAATCGATTGTGGTCAG+AGG | + | chr3_1:43494547-43494566 | None:intergenic | 45.0% | |
| ACCTCAACGATTTCATCGGA+AGG | + | chr3_1:43494718-43494737 | None:intergenic | 45.0% | |
| GCGAGAGAAAGGAAAGTGAA+TGG | - | chr3_1:43495452-43495471 | Msa0358510:intron | 45.0% | |
| GACGACCTGTAGTGTTAAAC+AGG | - | chr3_1:43495526-43495545 | Msa0358510:intron | 45.0% | |
| GCTCATGTAAACAGAGCTGA+AGG | - | chr3_1:43495559-43495578 | Msa0358510:intron | 45.0% | |
| TACATCAGAAGCAGCTATGG+AGG | - | chr3_1:43495602-43495621 | Msa0358510:intron | 45.0% | |
| GATCAAGTTAACAGAGCGAG+AGG | - | chr3_1:43495624-43495643 | Msa0358510:intron | 45.0% | |
| CAGCCTCACCTGAAAAAGAA+TGG | + | chr3_1:43496070-43496089 | None:intergenic | 45.0% | |
| TTCAGCTGTAGCTCTTGCTT+TGG | + | chr3_1:43496105-43496124 | None:intergenic | 45.0% | |
| AAAGCAAGAGCTACAGCTGA+AGG | - | chr3_1:43496104-43496123 | Msa0358510:intron | 45.0% | |
| AAACTGCATAACCTCACCTC+TGG | + | chr3_1:43496170-43496189 | None:intergenic | 45.0% | |
| CTCTATCTGAGTGGAATGCT+AGG | + | chr3_1:43496275-43496294 | None:intergenic | 45.0% | |
| !! | TGGTTATGGGCTTGTTGCAA+AGG | - | chr3_1:43496394-43496413 | Msa0358510:intron | 45.0% |
| !! | GGTTATGGGCTTGTTGCAAA+GGG | - | chr3_1:43496395-43496414 | Msa0358510:intron | 45.0% |
| ! | AGCTTCTTGTTGTCCCTGAT+AGG | - | chr3_1:43496678-43496697 | Msa0358510:intron | 45.0% |
| ! | GTGAAGGAAATTGGCCTATC+AGG | + | chr3_1:43496695-43496714 | None:intergenic | 45.0% |
| GAAAGACGATGCAGAAATGG+AGG | - | chr3_1:43496846-43496865 | Msa0358510:intron | 45.0% | |
| GCCTTAGAAGACAAAGGACA+TGG | + | chr3_1:43497420-43497439 | None:intergenic | 45.0% | |
| !! | GAAAGCGCCTTAGAAGACAA+AGG | + | chr3_1:43497426-43497445 | None:intergenic | 45.0% |
| TTGCAAGGTCTGAAGAGAAG+TGG | + | chr3_1:43497637-43497656 | None:intergenic | 45.0% | |
| ACTTCTCTTCAGACCTTGCA+AGG | - | chr3_1:43497636-43497655 | Msa0358510:intron | 45.0% | |
| ! | GGTATACGAAGTACCTTGCA+AGG | + | chr3_1:43497652-43497671 | None:intergenic | 45.0% |
| ACAACACAGTCAGGATCCTT+TGG | + | chr3_1:43497947-43497966 | None:intergenic | 45.0% | |
| !! | TATTGCAGGTTTGCTGTCCT+CGG | - | chr3_1:43498119-43498138 | Msa0358510:intron | 45.0% |
| !! | TATATATTCATTATATATTT+GGG | - | chr3_1:43495144-43495163 | Msa0358510:CDS | 5.0% |
| AAGAGGAAAGAGAGAGGGGA+CGG | + | chr3_1:43494407-43494426 | None:intergenic | 50.0% | |
| TTGTGGTCAGAGGTGAGCAA+AGG | + | chr3_1:43494537-43494556 | None:intergenic | 50.0% | |
| GCCTTCCGATGAAATCGTTG+AGG | - | chr3_1:43494714-43494733 | Msa0358510:intron | 50.0% | |
| !! | TTGCTGGTGATAGTGGTGAC+TGG | - | chr3_1:43494868-43494887 | Msa0358510:intron | 50.0% |
| TAGTGGTGACTGGTGAGCTT+AGG | - | chr3_1:43494878-43494897 | Msa0358510:intron | 50.0% | |
| !! | CATTAGGTGATGGGAAGAGG+TGG | - | chr3_1:43495421-43495440 | Msa0358510:intron | 50.0% |
| GTGTTAAACAGGAGAGAGGC+AGG | - | chr3_1:43495537-43495556 | Msa0358510:intron | 50.0% | |
| AAAATGGAGGACCAGAGGTG+AGG | - | chr3_1:43496156-43496175 | Msa0358510:intron | 50.0% | |
| GCTTTGTGGCAACCTCACGT+TGG | + | chr3_1:43496822-43496841 | None:intergenic | 55.0% | |
| TCATCCACATGCGGGTAGCA+GGG | + | chr3_1:43497026-43497045 | None:intergenic | 55.0% | |
| TTCATCCACATGCGGGTAGC+AGG | + | chr3_1:43497027-43497046 | None:intergenic | 55.0% | |
| CATCCACATGCGGGTAGCAG+GGG | + | chr3_1:43497025-43497044 | None:intergenic | 60.0% | |
| AGGCCCCTGCTACCCGCATG+TGG | - | chr3_1:43497019-43497038 | Msa0358510:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 43494289 | 43498486 | 43494289 | ID=Msa0358510;Name=Msa0358510 |
| chr3_1 | mRNA | 43494289 | 43498486 | 43494289 | ID=Msa0358510-mRNA-1;Parent=Msa0358510;Name=Msa0358510-mRNA-1;_AED=0.29;_eAED=0.29;_QI=484|0.75|0.8|1|0.75|0.6|5|310|85 |
| chr3_1 | exon | 43494289 | 43494648 | 43494289 | ID=Msa0358510-mRNA-1:exon:7749;Parent=Msa0358510-mRNA-1 |
| chr3_1 | exon | 43495118 | 43495205 | 43495118 | ID=Msa0358510-mRNA-1:exon:7748;Parent=Msa0358510-mRNA-1 |
| chr3_1 | exon | 43496603 | 43496694 | 43496603 | ID=Msa0358510-mRNA-1:exon:7747;Parent=Msa0358510-mRNA-1 |
| chr3_1 | exon | 43497130 | 43497348 | 43497130 | ID=Msa0358510-mRNA-1:exon:7746;Parent=Msa0358510-mRNA-1 |
| chr3_1 | exon | 43498194 | 43498486 | 43498194 | ID=Msa0358510-mRNA-1:exon:7745;Parent=Msa0358510-mRNA-1 |
| chr3_1 | five_prime_UTR | 43498194 | 43498486 | 43498194 | ID=Msa0358510-mRNA-1:five_prime_utr;Parent=Msa0358510-mRNA-1 |
| chr3_1 | five_prime_UTR | 43497158 | 43497348 | 43497158 | ID=Msa0358510-mRNA-1:five_prime_utr;Parent=Msa0358510-mRNA-1 |
| chr3_1 | CDS | 43497130 | 43497157 | 43497130 | ID=Msa0358510-mRNA-1:cds;Parent=Msa0358510-mRNA-1 |
| chr3_1 | CDS | 43496603 | 43496694 | 43496603 | ID=Msa0358510-mRNA-1:cds;Parent=Msa0358510-mRNA-1 |
| chr3_1 | CDS | 43495118 | 43495205 | 43495118 | ID=Msa0358510-mRNA-1:cds;Parent=Msa0358510-mRNA-1 |
| chr3_1 | CDS | 43494599 | 43494648 | 43494599 | ID=Msa0358510-mRNA-1:cds;Parent=Msa0358510-mRNA-1 |
| chr3_1 | three_prime_UTR | 43494289 | 43494598 | 43494289 | ID=Msa0358510-mRNA-1:three_prime_utr;Parent=Msa0358510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
