Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398370 | KEH32942.1 | 76.718 | 262 | 18 | 1 | 1 | 219 | 1 | 262 | 1.47e-131 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398370 | sp|Q9LRJ9|CRR38_ARATH | 29.084 | 251 | 122 | 9 | 3 | 202 | 5 | 250 | 2.68e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398370 | G7ZZG2 | 76.718 | 262 | 18 | 1 | 1 | 219 | 1 | 262 | 7.01e-132 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0398370 | Msa0487440 | 0.833426 | 5.369621e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398370 | MtrunA17_Chr3g0081011 | 75.479 | 261 | 21 | 1 | 1 | 218 | 1 | 261 | 5.97e-126 | 370 |
| Msa0398370 | MtrunA17_Chr3g0081001 | 71.863 | 263 | 30 | 2 | 1 | 219 | 1 | 263 | 1.44e-125 | 369 |
| Msa0398370 | MtrunA17_Chr8g0354271 | 44.922 | 256 | 94 | 5 | 4 | 214 | 9 | 262 | 9.48e-62 | 203 |
| Msa0398370 | MtrunA17_Chr8g0354421 | 42.085 | 259 | 99 | 5 | 4 | 215 | 28 | 282 | 1.85e-57 | 192 |
| Msa0398370 | MtrunA17_Chr8g0354411 | 42.083 | 240 | 92 | 3 | 23 | 215 | 22 | 261 | 1.24e-56 | 182 |
| Msa0398370 | MtrunA17_Chr8g0354431 | 39.453 | 256 | 103 | 4 | 12 | 215 | 6 | 261 | 1.43e-50 | 174 |
| Msa0398370 | MtrunA17_Chr8g0354281 | 40.664 | 241 | 95 | 4 | 21 | 213 | 20 | 260 | 7.60e-50 | 171 |
| Msa0398370 | MtrunA17_Chr8g0354441 | 38.224 | 259 | 105 | 4 | 12 | 215 | 11 | 269 | 1.04e-49 | 171 |
| Msa0398370 | MtrunA17_Chr8g0354351 | 38.521 | 257 | 102 | 7 | 12 | 215 | 5 | 258 | 2.01e-49 | 170 |
| Msa0398370 | MtrunA17_Chr3g0082941 | 80.435 | 92 | 15 | 1 | 121 | 209 | 1 | 92 | 7.87e-45 | 155 |
| Msa0398370 | MtrunA17_Chr8g0354341 | 34.426 | 244 | 110 | 5 | 21 | 215 | 19 | 261 | 5.60e-40 | 137 |
| Msa0398370 | MtrunA17_Chr3g0081051 | 29.630 | 216 | 107 | 3 | 46 | 216 | 40 | 255 | 1.33e-25 | 100 |
| Msa0398370 | MtrunA17_Chr3g0082951 | 85.185 | 54 | 8 | 0 | 32 | 85 | 119 | 172 | 7.62e-25 | 97.4 |
| Msa0398370 | MtrunA17_Chr1g0206531 | 28.682 | 258 | 133 | 7 | 6 | 214 | 8 | 263 | 4.39e-24 | 99.8 |
| Msa0398370 | MtrunA17_Chr3g0081031 | 28.700 | 223 | 114 | 3 | 35 | 212 | 47 | 269 | 2.34e-22 | 94.7 |
| Msa0398370 | MtrunA17_Chr1g0206461 | 26.423 | 246 | 129 | 6 | 16 | 215 | 17 | 256 | 4.33e-18 | 82.4 |
| Msa0398370 | MtrunA17_Chr1g0206291 | 24.521 | 261 | 140 | 7 | 5 | 215 | 23 | 276 | 7.22e-18 | 81.6 |
| Msa0398370 | MtrunA17_Chr6g0475001 | 27.509 | 269 | 125 | 9 | 2 | 213 | 4 | 259 | 2.53e-17 | 80.1 |
| Msa0398370 | MtrunA17_Chr2g0323011 | 35.593 | 118 | 73 | 3 | 85 | 200 | 127 | 243 | 3.04e-16 | 75.1 |
| Msa0398370 | MtrunA17_Chr2g0280391 | 33.051 | 118 | 76 | 3 | 85 | 201 | 131 | 246 | 3.27e-16 | 75.5 |
| Msa0398370 | MtrunA17_Chr2g0280361 | 32.847 | 137 | 77 | 4 | 85 | 214 | 126 | 254 | 3.57e-16 | 75.1 |
| Msa0398370 | MtrunA17_Chr1g0154311 | 27.556 | 225 | 107 | 5 | 30 | 202 | 33 | 253 | 5.74e-16 | 76.3 |
| Msa0398370 | MtrunA17_Chr1g0206451 | 26.744 | 258 | 139 | 5 | 6 | 214 | 42 | 298 | 8.54e-16 | 75.5 |
| Msa0398370 | MtrunA17_Chr5g0428591 | 24.797 | 246 | 128 | 6 | 5 | 202 | 9 | 245 | 1.31e-15 | 73.6 |
| Msa0398370 | MtrunA17_Chr6g0474901 | 26.718 | 262 | 126 | 8 | 4 | 213 | 5 | 252 | 2.05e-15 | 74.7 |
| Msa0398370 | MtrunA17_Chr1g0206561 | 34.615 | 130 | 81 | 3 | 85 | 210 | 118 | 247 | 2.73e-15 | 74.3 |
| Msa0398370 | MtrunA17_Chr1g0154361 | 26.721 | 247 | 129 | 7 | 7 | 202 | 8 | 253 | 2.87e-15 | 73.2 |
| Msa0398370 | MtrunA17_Chr2g0322981 | 29.412 | 119 | 83 | 1 | 85 | 202 | 127 | 245 | 3.95e-15 | 72.0 |
| Msa0398370 | MtrunA17_Chr1g0206521 | 30.303 | 132 | 90 | 1 | 85 | 214 | 772 | 903 | 6.10e-15 | 73.2 |
| Msa0398370 | MtrunA17_Chr1g0206521 | 31.061 | 132 | 89 | 1 | 85 | 214 | 130 | 261 | 1.88e-14 | 72.0 |
| Msa0398370 | MtrunA17_Chr5g0394021 | 31.933 | 119 | 79 | 2 | 85 | 201 | 129 | 247 | 1.02e-14 | 72.4 |
| Msa0398370 | MtrunA17_Chr1g0206351 | 27.155 | 232 | 109 | 5 | 25 | 202 | 29 | 254 | 2.61e-14 | 71.2 |
| Msa0398370 | MtrunA17_Chr6g0474971 | 26.038 | 265 | 124 | 8 | 4 | 213 | 5 | 252 | 2.71e-14 | 70.5 |
| Msa0398370 | MtrunA17_Chr1g0154341 | 27.119 | 236 | 120 | 7 | 30 | 214 | 31 | 265 | 3.29e-14 | 69.7 |
| Msa0398370 | MtrunA17_Chr5g0428571 | 26.957 | 230 | 114 | 8 | 22 | 202 | 22 | 246 | 6.78e-14 | 70.1 |
| Msa0398370 | MtrunA17_Chr7g0234231 | 26.316 | 247 | 134 | 6 | 10 | 210 | 3 | 247 | 9.87e-14 | 68.2 |
| Msa0398370 | MtrunA17_Chr1g0154351 | 24.900 | 249 | 135 | 6 | 7 | 204 | 8 | 255 | 3.81e-13 | 67.8 |
| Msa0398370 | MtrunA17_Chr5g0394001 | 24.797 | 246 | 129 | 7 | 7 | 203 | 13 | 251 | 5.27e-13 | 67.4 |
| Msa0398370 | MtrunA17_Chr6g0474811 | 29.577 | 142 | 80 | 2 | 85 | 210 | 123 | 260 | 1.24e-12 | 66.6 |
| Msa0398370 | MtrunA17_Chr1g0154371 | 32.787 | 122 | 77 | 5 | 85 | 201 | 145 | 266 | 4.69e-12 | 64.7 |
| Msa0398370 | MtrunA17_Chr5g0428531 | 27.200 | 250 | 122 | 9 | 5 | 203 | 9 | 249 | 6.19e-12 | 63.5 |
| Msa0398370 | MtrunA17_Chr5g0428601 | 32.353 | 136 | 79 | 5 | 85 | 214 | 4 | 132 | 1.23e-11 | 63.2 |
| Msa0398370 | MtrunA17_Chr8g0354321 | 56.098 | 41 | 18 | 0 | 163 | 203 | 25 | 65 | 4.22e-11 | 57.8 |
| Msa0398370 | MtrunA17_Chr2g0280381 | 28.358 | 134 | 85 | 5 | 85 | 214 | 127 | 253 | 4.30e-11 | 60.8 |
| Msa0398370 | MtrunA17_Chr1g0206571 | 23.982 | 221 | 114 | 7 | 35 | 202 | 39 | 258 | 5.84e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398370 | AT3G22060.1 | 29.084 | 251 | 122 | 9 | 3 | 202 | 5 | 250 | 2.72e-18 | 80.9 |
| Msa0398370 | AT4G05200.2 | 23.897 | 272 | 145 | 7 | 9 | 219 | 26 | 296 | 1.73e-17 | 80.9 |
| Msa0398370 | AT4G05200.1 | 23.897 | 272 | 145 | 7 | 9 | 219 | 8 | 278 | 2.10e-17 | 80.9 |
| Msa0398370 | AT4G38830.1 | 31.452 | 124 | 76 | 3 | 85 | 201 | 124 | 245 | 5.42e-15 | 73.6 |
| Msa0398370 | AT4G23180.3 | 26.222 | 225 | 113 | 7 | 25 | 201 | 34 | 253 | 3.34e-14 | 71.2 |
| Msa0398370 | AT4G23180.2 | 26.222 | 225 | 113 | 7 | 25 | 201 | 34 | 253 | 4.23e-14 | 70.9 |
| Msa0398370 | AT4G23180.1 | 26.222 | 225 | 113 | 7 | 25 | 201 | 34 | 253 | 4.94e-14 | 70.9 |
| Msa0398370 | AT3G58310.1 | 33.333 | 114 | 73 | 2 | 90 | 200 | 140 | 253 | 7.72e-14 | 68.9 |
| Msa0398370 | AT4G21410.1 | 29.032 | 124 | 83 | 3 | 85 | 203 | 4 | 127 | 1.17e-12 | 66.6 |
| Msa0398370 | AT4G21410.3 | 29.032 | 124 | 83 | 3 | 85 | 203 | 129 | 252 | 1.29e-12 | 66.6 |
| Msa0398370 | AT4G21410.2 | 28.571 | 126 | 85 | 3 | 85 | 205 | 129 | 254 | 1.44e-12 | 66.6 |
| Msa0398370 | AT2G31620.1 | 42.424 | 66 | 38 | 0 | 135 | 200 | 187 | 252 | 1.95e-12 | 65.1 |
| Msa0398370 | AT4G21400.8 | 28.571 | 126 | 81 | 4 | 85 | 203 | 4 | 127 | 7.80e-12 | 64.3 |
| Msa0398370 | AT4G21400.2 | 28.125 | 128 | 83 | 4 | 85 | 205 | 131 | 256 | 8.17e-12 | 64.3 |
| Msa0398370 | AT4G21400.3 | 28.125 | 128 | 83 | 4 | 85 | 205 | 131 | 256 | 8.58e-12 | 64.3 |
| Msa0398370 | AT4G21400.7 | 28.125 | 128 | 83 | 4 | 85 | 205 | 105 | 230 | 8.73e-12 | 64.3 |
| Msa0398370 | AT4G21400.6 | 28.125 | 128 | 83 | 4 | 85 | 205 | 131 | 256 | 9.50e-12 | 64.3 |
| Msa0398370 | AT4G21400.4 | 28.125 | 128 | 83 | 4 | 85 | 205 | 131 | 256 | 9.50e-12 | 64.3 |
| Msa0398370 | AT4G21400.5 | 28.125 | 128 | 83 | 4 | 85 | 205 | 131 | 256 | 9.50e-12 | 64.3 |
| Msa0398370 | AT4G21400.1 | 28.125 | 128 | 83 | 4 | 85 | 205 | 131 | 256 | 9.72e-12 | 64.3 |
| Msa0398370 | AT4G20670.1 | 38.462 | 78 | 48 | 0 | 135 | 212 | 188 | 265 | 1.01e-11 | 63.2 |
| Msa0398370 | AT3G21940.1 | 39.744 | 78 | 47 | 0 | 125 | 202 | 197 | 274 | 2.23e-11 | 62.4 |
| Msa0398370 | AT4G20640.1 | 41.176 | 68 | 40 | 0 | 135 | 202 | 188 | 255 | 2.53e-11 | 62.0 |
| Msa0398370 | AT4G20630.1 | 41.176 | 68 | 40 | 0 | 135 | 202 | 188 | 255 | 2.53e-11 | 62.0 |
| Msa0398370 | AT4G20580.1 | 41.176 | 68 | 40 | 0 | 135 | 202 | 188 | 255 | 2.53e-11 | 62.0 |
| Msa0398370 | AT4G20600.1 | 41.176 | 68 | 40 | 0 | 135 | 202 | 188 | 255 | 2.53e-11 | 62.0 |
| Msa0398370 | AT4G20620.1 | 41.176 | 68 | 40 | 0 | 135 | 202 | 188 | 255 | 2.53e-11 | 62.0 |
| Msa0398370 | AT4G20610.1 | 41.176 | 68 | 40 | 0 | 135 | 202 | 188 | 255 | 2.53e-11 | 62.0 |
| Msa0398370 | AT4G20590.1 | 41.176 | 68 | 40 | 0 | 135 | 202 | 188 | 255 | 2.53e-11 | 62.0 |
| Msa0398370 | AT4G20570.1 | 42.424 | 66 | 38 | 0 | 135 | 200 | 202 | 267 | 2.66e-11 | 62.0 |
| Msa0398370 | AT4G20560.1 | 42.424 | 66 | 38 | 0 | 135 | 200 | 202 | 267 | 2.66e-11 | 62.0 |
| Msa0398370 | AT4G20540.1 | 42.424 | 66 | 38 | 0 | 135 | 200 | 202 | 267 | 2.66e-11 | 62.0 |
| Msa0398370 | AT4G20645.1 | 42.424 | 66 | 38 | 0 | 135 | 200 | 202 | 267 | 2.66e-11 | 62.0 |
| Msa0398370 | AT4G20530.1 | 42.424 | 66 | 38 | 0 | 135 | 200 | 202 | 267 | 2.66e-11 | 62.0 |
| Msa0398370 | AT4G20550.1 | 42.424 | 66 | 38 | 0 | 135 | 200 | 202 | 267 | 2.66e-11 | 62.0 |
| Msa0398370 | AT3G21940.2 | 39.744 | 78 | 47 | 0 | 125 | 202 | 102 | 179 | 2.70e-11 | 60.5 |
| Msa0398370 | AT3G21960.1 | 35.227 | 88 | 51 | 1 | 121 | 202 | 174 | 261 | 3.61e-11 | 61.6 |
Find 48 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCAAACCATAATTTCTT+TGG | 0.178604 | 3_2:+19801739 | Msa0398370:CDS |
| CCCCATTGCATACAACTTAT+TGG | 0.202749 | 3_2:-19801881 | None:intergenic |
| GATTACATTGTTTGTCATTA+AGG | 0.244483 | 3_2:-19801957 | None:intergenic |
| ATGGATTGGTGCAGTGTAAT+AGG | 0.253549 | 3_2:+19801932 | Msa0398370:CDS |
| TGAGGTTCCCAAAGAAATTA+TGG | 0.272174 | 3_2:-19801747 | None:intergenic |
| GCAATGAAAGGACTTTATTA+AGG | 0.295900 | 3_2:-19801336 | None:intergenic |
| CTTCCATACAAACCTGGATT+TGG | 0.296960 | 3_2:-19802120 | None:intergenic |
| CCAAGTTGTTTGATGAAATA+TGG | 0.308299 | 3_2:+19802051 | Msa0398370:CDS |
| TTTAATAAGTGAAGCTACTT+TGG | 0.335015 | 3_2:+19801855 | Msa0398370:CDS |
| ATCTTTGTCCCACAGCATTT+AGG | 0.365986 | 3_2:-19802009 | None:intergenic |
| ATTCAAACCATAATTTCTTT+GGG | 0.367276 | 3_2:+19801740 | Msa0398370:CDS |
| AATACAGTTGATGCTGTCTA+TGG | 0.385688 | 3_2:+19801412 | Msa0398370:CDS |
| ACCAATAAGTTGTATGCAAT+GGG | 0.387145 | 3_2:+19801880 | Msa0398370:CDS |
| TGAAAGGACTTTATTAAGGT+TGG | 0.393193 | 3_2:-19801332 | None:intergenic |
| CAATCATCACCTACATAATC+TGG | 0.394451 | 3_2:-19801268 | None:intergenic |
| CAAACAATGTAATCAATGTT+TGG | 0.403809 | 3_2:+19801966 | Msa0398370:CDS |
| TTGCCAAATCCAGGTTTGTA+TGG | 0.407425 | 3_2:+19802117 | Msa0398370:CDS |
| TCATGAAGCTAAGAAATCTA+AGG | 0.440409 | 3_2:-19801216 | None:intergenic |
| TCTGCTCCTTTGCCAAATCC+AGG | 0.449840 | 3_2:+19802108 | Msa0398370:CDS |
| CCATATTTCATCAAACAACT+TGG | 0.451516 | 3_2:-19802051 | None:intergenic |
| TGGATTGGTGCAGTGTAATA+GGG | 0.457393 | 3_2:+19801933 | Msa0398370:CDS |
| TGGGACAAAGATTGGTTGGC+AGG | 0.459669 | 3_2:+19802020 | Msa0398370:CDS |
| GGATATAATCACACAAGTAT+AGG | 0.465096 | 3_2:+19801385 | Msa0398370:CDS |
| GACCAATAAGTTGTATGCAA+TGG | 0.469020 | 3_2:+19801879 | Msa0398370:CDS |
| GACCCCGGCATTTGCCATGA+TGG | 0.485492 | 3_2:-19801778 | None:intergenic |
| AAGTCCATCATGGCAAATGC+CGG | 0.490942 | 3_2:+19801774 | Msa0398370:CDS |
| AGTCCATCATGGCAAATGCC+GGG | 0.495603 | 3_2:+19801775 | Msa0398370:CDS |
| AAATGCTGTGGGACAAAGAT+TGG | 0.502175 | 3_2:+19802012 | Msa0398370:CDS |
| TCAGCTTTATCAAGTTCTTG+TGG | 0.506622 | 3_2:-19801817 | None:intergenic |
| CAGAAGTTGCAGAAGTAAGT+TGG | 0.514885 | 3_2:-19802089 | None:intergenic |
| TGTAGCTGTAAGAGATTGTT+CGG | 0.528498 | 3_2:-19801302 | None:intergenic |
| AATTATCTTCCATACAAACC+TGG | 0.545072 | 3_2:-19802126 | None:intergenic |
| GAGATTGTTCGGTTGAGTTG+TGG | 0.550536 | 3_2:-19801291 | None:intergenic |
| GACAAAGTTCCTAAATGCTG+TGG | 0.560237 | 3_2:+19802000 | Msa0398370:CDS |
| ACCTCACAACAAGTCCATCA+TGG | 0.579042 | 3_2:+19801764 | Msa0398370:CDS |
| GCACAATCACCAGATTATGT+AGG | 0.594913 | 3_2:+19801259 | Msa0398370:CDS |
| CAATAAGTTGTATGCAATGG+GGG | 0.596120 | 3_2:+19801882 | Msa0398370:CDS |
| TACAAACCTGGATTTGGCAA+AGG | 0.598161 | 3_2:-19802114 | None:intergenic |
| GAAGCTAAGAAATCTAAGGA+TGG | 0.601101 | 3_2:-19801212 | None:intergenic |
| ACAAAGTTCCTAAATGCTGT+GGG | 0.612594 | 3_2:+19802001 | Msa0398370:CDS |
| ACAATGTAATCAATGTTTGG+AGG | 0.612800 | 3_2:+19801969 | Msa0398370:CDS |
| TCTGATGCTATTGTAAGCAA+AGG | 0.620402 | 3_2:+19801364 | Msa0398370:CDS |
| GCCATGATGGACTTGTTGTG+AGG | 0.620580 | 3_2:-19801765 | None:intergenic |
| GCTGTGGGACAAAGATTGGT+TGG | 0.623601 | 3_2:+19802016 | Msa0398370:CDS |
| CATCAGATGAGAGCAATGAA+AGG | 0.631650 | 3_2:-19801348 | None:intergenic |
| ATAATCTGGTGATTGTGCAA+TGG | 0.639968 | 3_2:-19801254 | None:intergenic |
| GTCCATCATGGCAAATGCCG+GGG | 0.661685 | 3_2:+19801776 | Msa0398370:CDS |
| CCAATAAGTTGTATGCAATG+GGG | 0.687895 | 3_2:+19801881 | Msa0398370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATCTTTGTATATTAA+TGG | + | chr3_2:19801607-19801626 | Msa0398370:intron | 10.0% |
| !! | TATTTATCTTTGTATATTAA+TGG | + | chr3_2:19801607-19801626 | Msa0398370:intron | 10.0% |
| !! | TGTATATTAATGGAAAAATA+TGG | + | chr3_2:19801617-19801636 | Msa0398370:intron | 15.0% |
| !! | TGTATATTAATGGAAAAATA+TGG | + | chr3_2:19801617-19801636 | Msa0398370:intron | 15.0% |
| !! | TATTCAAACCATAATTTCTT+TGG | + | chr3_2:19801739-19801758 | Msa0398370:CDS | 20.0% |
| !! | ATTCAAACCATAATTTCTTT+GGG | + | chr3_2:19801740-19801759 | Msa0398370:CDS | 20.0% |
| !! | TATTCAAACCATAATTTCTT+TGG | + | chr3_2:19801739-19801758 | Msa0398370:CDS | 20.0% |
| !! | ATTCAAACCATAATTTCTTT+GGG | + | chr3_2:19801740-19801759 | Msa0398370:CDS | 20.0% |
| ! | AATACCATATAAGATGTTGT+TGG | - | chr3_2:19801588-19801607 | None:intergenic | 25.0% |
| ! | AAATATGGTCAAAGTATATC+TGG | + | chr3_2:19801632-19801651 | Msa0398370:intron | 25.0% |
| ! | TTGTAAATATGTGTTTGAGT+AGG | + | chr3_2:19801716-19801735 | Msa0398370:intron | 25.0% |
| ! | TTTAATAAGTGAAGCTACTT+TGG | + | chr3_2:19801855-19801874 | Msa0398370:CDS | 25.0% |
| ! | GATTACATTGTTTGTCATTA+AGG | - | chr3_2:19801960-19801979 | None:intergenic | 25.0% |
| ! | CAAACAATGTAATCAATGTT+TGG | + | chr3_2:19801966-19801985 | Msa0398370:CDS | 25.0% |
| ! | AATACCATATAAGATGTTGT+TGG | - | chr3_2:19801588-19801607 | None:intergenic | 25.0% |
| ! | AAATATGGTCAAAGTATATC+TGG | + | chr3_2:19801632-19801651 | Msa0398370:intron | 25.0% |
| ! | TTGTAAATATGTGTTTGAGT+AGG | + | chr3_2:19801716-19801735 | Msa0398370:intron | 25.0% |
| ! | TTTAATAAGTGAAGCTACTT+TGG | + | chr3_2:19801855-19801874 | Msa0398370:CDS | 25.0% |
| ! | GATTACATTGTTTGTCATTA+AGG | - | chr3_2:19801960-19801979 | None:intergenic | 25.0% |
| ! | CAAACAATGTAATCAATGTT+TGG | + | chr3_2:19801966-19801985 | Msa0398370:CDS | 25.0% |
| TCATGAAGCTAAGAAATCTA+AGG | - | chr3_2:19801219-19801238 | None:intergenic | 30.0% | |
| !! | TGCAATGGATTTTGTGAAAA+GGG | - | chr3_2:19801242-19801261 | None:intergenic | 30.0% |
| TGAAAGGACTTTATTAAGGT+TGG | - | chr3_2:19801335-19801354 | None:intergenic | 30.0% | |
| GCAATGAAAGGACTTTATTA+AGG | - | chr3_2:19801339-19801358 | None:intergenic | 30.0% | |
| GGATATAATCACACAAGTAT+AGG | + | chr3_2:19801385-19801404 | Msa0398370:CDS | 30.0% | |
| GAATCCAACAACATCTTATA+TGG | + | chr3_2:19801581-19801600 | Msa0398370:intron | 30.0% | |
| CAATAGTGCATATTGTCAAA+TGG | + | chr3_2:19801656-19801675 | Msa0398370:intron | 30.0% | |
| ACCAATAAGTTGTATGCAAT+GGG | + | chr3_2:19801880-19801899 | Msa0398370:CDS | 30.0% | |
| TTGAGCAGTGAAAAAAGATA+TGG | + | chr3_2:19801913-19801932 | Msa0398370:CDS | 30.0% | |
| CAGTGAAAAAAGATATGGAT+TGG | + | chr3_2:19801918-19801937 | Msa0398370:CDS | 30.0% | |
| ACAATGTAATCAATGTTTGG+AGG | + | chr3_2:19801969-19801988 | Msa0398370:CDS | 30.0% | |
| CCATATTTCATCAAACAACT+TGG | - | chr3_2:19802054-19802073 | None:intergenic | 30.0% | |
| CCAAGTTGTTTGATGAAATA+TGG | + | chr3_2:19802051-19802070 | Msa0398370:CDS | 30.0% | |
| TCATGAAGCTAAGAAATCTA+AGG | - | chr3_2:19801219-19801238 | None:intergenic | 30.0% | |
| !! | TGCAATGGATTTTGTGAAAA+GGG | - | chr3_2:19801242-19801261 | None:intergenic | 30.0% |
| TGAAAGGACTTTATTAAGGT+TGG | - | chr3_2:19801335-19801354 | None:intergenic | 30.0% | |
| GCAATGAAAGGACTTTATTA+AGG | - | chr3_2:19801339-19801358 | None:intergenic | 30.0% | |
| GGATATAATCACACAAGTAT+AGG | + | chr3_2:19801385-19801404 | Msa0398370:CDS | 30.0% | |
| GAATCCAACAACATCTTATA+TGG | + | chr3_2:19801581-19801600 | Msa0398370:intron | 30.0% | |
| CAATAGTGCATATTGTCAAA+TGG | + | chr3_2:19801656-19801675 | Msa0398370:intron | 30.0% | |
| ACCAATAAGTTGTATGCAAT+GGG | + | chr3_2:19801880-19801899 | Msa0398370:CDS | 30.0% | |
| TTGAGCAGTGAAAAAAGATA+TGG | + | chr3_2:19801913-19801932 | Msa0398370:CDS | 30.0% | |
| CAGTGAAAAAAGATATGGAT+TGG | + | chr3_2:19801918-19801937 | Msa0398370:CDS | 30.0% | |
| ACAATGTAATCAATGTTTGG+AGG | + | chr3_2:19801969-19801988 | Msa0398370:CDS | 30.0% | |
| CCATATTTCATCAAACAACT+TGG | - | chr3_2:19802054-19802073 | None:intergenic | 30.0% | |
| CCAAGTTGTTTGATGAAATA+TGG | + | chr3_2:19802051-19802070 | Msa0398370:CDS | 30.0% | |
| GAAGCTAAGAAATCTAAGGA+TGG | - | chr3_2:19801215-19801234 | None:intergenic | 35.0% | |
| !! | GTGCAATGGATTTTGTGAAA+AGG | - | chr3_2:19801243-19801262 | None:intergenic | 35.0% |
| ATAATCTGGTGATTGTGCAA+TGG | - | chr3_2:19801257-19801276 | None:intergenic | 35.0% | |
| CAATCATCACCTACATAATC+TGG | - | chr3_2:19801271-19801290 | None:intergenic | 35.0% | |
| TGTAGCTGTAAGAGATTGTT+CGG | - | chr3_2:19801305-19801324 | None:intergenic | 35.0% | |
| TCTGATGCTATTGTAAGCAA+AGG | + | chr3_2:19801364-19801383 | Msa0398370:CDS | 35.0% | |
| ! | AATACAGTTGATGCTGTCTA+TGG | + | chr3_2:19801412-19801431 | Msa0398370:CDS | 35.0% |
| TATGGTCTGTATGATTGTAG+AGG | + | chr3_2:19801430-19801449 | Msa0398370:intron | 35.0% | |
| GTCATCTAATATGAGACAGA+GGG | + | chr3_2:19801678-19801697 | Msa0398370:intron | 35.0% | |
| TGAGGTTCCCAAAGAAATTA+TGG | - | chr3_2:19801750-19801769 | None:intergenic | 35.0% | |
| !!! | TTAGTGATGTTTTTTGACCC+CGG | - | chr3_2:19801796-19801815 | None:intergenic | 35.0% |
| ! | TCAGCTTTATCAAGTTCTTG+TGG | - | chr3_2:19801820-19801839 | None:intergenic | 35.0% |
| GACCAATAAGTTGTATGCAA+TGG | + | chr3_2:19801879-19801898 | Msa0398370:CDS | 35.0% | |
| CCAATAAGTTGTATGCAATG+GGG | + | chr3_2:19801881-19801900 | Msa0398370:CDS | 35.0% | |
| CAATAAGTTGTATGCAATGG+GGG | + | chr3_2:19801882-19801901 | Msa0398370:CDS | 35.0% | |
| ACAAAGTTCCTAAATGCTGT+GGG | + | chr3_2:19802001-19802020 | Msa0398370:CDS | 35.0% | |
| GAAGCTAAGAAATCTAAGGA+TGG | - | chr3_2:19801215-19801234 | None:intergenic | 35.0% | |
| !! | GTGCAATGGATTTTGTGAAA+AGG | - | chr3_2:19801243-19801262 | None:intergenic | 35.0% |
| ATAATCTGGTGATTGTGCAA+TGG | - | chr3_2:19801257-19801276 | None:intergenic | 35.0% | |
| CAATCATCACCTACATAATC+TGG | - | chr3_2:19801271-19801290 | None:intergenic | 35.0% | |
| TGTAGCTGTAAGAGATTGTT+CGG | - | chr3_2:19801305-19801324 | None:intergenic | 35.0% | |
| TCTGATGCTATTGTAAGCAA+AGG | + | chr3_2:19801364-19801383 | Msa0398370:CDS | 35.0% | |
| ! | AATACAGTTGATGCTGTCTA+TGG | + | chr3_2:19801412-19801431 | Msa0398370:CDS | 35.0% |
| TATGGTCTGTATGATTGTAG+AGG | + | chr3_2:19801430-19801449 | Msa0398370:intron | 35.0% | |
| GTCATCTAATATGAGACAGA+GGG | + | chr3_2:19801678-19801697 | Msa0398370:intron | 35.0% | |
| TGAGGTTCCCAAAGAAATTA+TGG | - | chr3_2:19801750-19801769 | None:intergenic | 35.0% | |
| !!! | TTAGTGATGTTTTTTGACCC+CGG | - | chr3_2:19801796-19801815 | None:intergenic | 35.0% |
| ! | TCAGCTTTATCAAGTTCTTG+TGG | - | chr3_2:19801820-19801839 | None:intergenic | 35.0% |
| GACCAATAAGTTGTATGCAA+TGG | + | chr3_2:19801879-19801898 | Msa0398370:CDS | 35.0% | |
| CCAATAAGTTGTATGCAATG+GGG | + | chr3_2:19801881-19801900 | Msa0398370:CDS | 35.0% | |
| CAATAAGTTGTATGCAATGG+GGG | + | chr3_2:19801882-19801901 | Msa0398370:CDS | 35.0% | |
| ACAAAGTTCCTAAATGCTGT+GGG | + | chr3_2:19802001-19802020 | Msa0398370:CDS | 35.0% | |
| GCACAATCACCAGATTATGT+AGG | + | chr3_2:19801259-19801278 | Msa0398370:CDS | 40.0% | |
| CATCAGATGAGAGCAATGAA+AGG | - | chr3_2:19801351-19801370 | None:intergenic | 40.0% | |
| ATTACCGCTGAAGCTCTATT+AGG | - | chr3_2:19801523-19801542 | None:intergenic | 40.0% | |
| ATAGAGCTTCAGCGGTAATA+TGG | + | chr3_2:19801524-19801543 | Msa0398370:intron | 40.0% | |
| GGTCATCTAATATGAGACAG+AGG | + | chr3_2:19801677-19801696 | Msa0398370:intron | 40.0% | |
| CCCCATTGCATACAACTTAT+TGG | - | chr3_2:19801884-19801903 | None:intergenic | 40.0% | |
| !! | ATGGATTGGTGCAGTGTAAT+AGG | + | chr3_2:19801932-19801951 | Msa0398370:CDS | 40.0% |
| !! | TGGATTGGTGCAGTGTAATA+GGG | + | chr3_2:19801933-19801952 | Msa0398370:CDS | 40.0% |
| GACAAAGTTCCTAAATGCTG+TGG | + | chr3_2:19802000-19802019 | Msa0398370:CDS | 40.0% | |
| ATCTTTGTCCCACAGCATTT+AGG | - | chr3_2:19802012-19802031 | None:intergenic | 40.0% | |
| AAATGCTGTGGGACAAAGAT+TGG | + | chr3_2:19802012-19802031 | Msa0398370:CDS | 40.0% | |
| CAGAAGTTGCAGAAGTAAGT+TGG | - | chr3_2:19802092-19802111 | None:intergenic | 40.0% | |
| TACAAACCTGGATTTGGCAA+AGG | - | chr3_2:19802117-19802136 | None:intergenic | 40.0% | |
| TTGCCAAATCCAGGTTTGTA+TGG | + | chr3_2:19802117-19802136 | Msa0398370:CDS | 40.0% | |
| CTTCCATACAAACCTGGATT+TGG | - | chr3_2:19802123-19802142 | None:intergenic | 40.0% | |
| GCACAATCACCAGATTATGT+AGG | + | chr3_2:19801259-19801278 | Msa0398370:CDS | 40.0% | |
| CATCAGATGAGAGCAATGAA+AGG | - | chr3_2:19801351-19801370 | None:intergenic | 40.0% | |
| ATTACCGCTGAAGCTCTATT+AGG | - | chr3_2:19801523-19801542 | None:intergenic | 40.0% | |
| ATAGAGCTTCAGCGGTAATA+TGG | + | chr3_2:19801524-19801543 | Msa0398370:intron | 40.0% | |
| GGTCATCTAATATGAGACAG+AGG | + | chr3_2:19801677-19801696 | Msa0398370:intron | 40.0% | |
| CCCCATTGCATACAACTTAT+TGG | - | chr3_2:19801884-19801903 | None:intergenic | 40.0% | |
| !! | ATGGATTGGTGCAGTGTAAT+AGG | + | chr3_2:19801932-19801951 | Msa0398370:CDS | 40.0% |
| !! | TGGATTGGTGCAGTGTAATA+GGG | + | chr3_2:19801933-19801952 | Msa0398370:CDS | 40.0% |
| GACAAAGTTCCTAAATGCTG+TGG | + | chr3_2:19802000-19802019 | Msa0398370:CDS | 40.0% | |
| ATCTTTGTCCCACAGCATTT+AGG | - | chr3_2:19802012-19802031 | None:intergenic | 40.0% | |
| AAATGCTGTGGGACAAAGAT+TGG | + | chr3_2:19802012-19802031 | Msa0398370:CDS | 40.0% | |
| CAGAAGTTGCAGAAGTAAGT+TGG | - | chr3_2:19802092-19802111 | None:intergenic | 40.0% | |
| TACAAACCTGGATTTGGCAA+AGG | - | chr3_2:19802117-19802136 | None:intergenic | 40.0% | |
| TTGCCAAATCCAGGTTTGTA+TGG | + | chr3_2:19802117-19802136 | Msa0398370:CDS | 40.0% | |
| CTTCCATACAAACCTGGATT+TGG | - | chr3_2:19802123-19802142 | None:intergenic | 40.0% | |
| ! | GAGATTGTTCGGTTGAGTTG+TGG | - | chr3_2:19801294-19801313 | None:intergenic | 45.0% |
| CTGTCCTAATAGAGCTTCAG+CGG | + | chr3_2:19801516-19801535 | Msa0398370:intron | 45.0% | |
| ACCTCACAACAAGTCCATCA+TGG | + | chr3_2:19801764-19801783 | Msa0398370:CDS | 45.0% | |
| AAGTCCATCATGGCAAATGC+CGG | + | chr3_2:19801774-19801793 | Msa0398370:CDS | 45.0% | |
| ! | GAGATTGTTCGGTTGAGTTG+TGG | - | chr3_2:19801294-19801313 | None:intergenic | 45.0% |
| CTGTCCTAATAGAGCTTCAG+CGG | + | chr3_2:19801516-19801535 | Msa0398370:intron | 45.0% | |
| ACCTCACAACAAGTCCATCA+TGG | + | chr3_2:19801764-19801783 | Msa0398370:CDS | 45.0% | |
| AAGTCCATCATGGCAAATGC+CGG | + | chr3_2:19801774-19801793 | Msa0398370:CDS | 45.0% | |
| !! | GCCATGATGGACTTGTTGTG+AGG | - | chr3_2:19801768-19801787 | None:intergenic | 50.0% |
| AGTCCATCATGGCAAATGCC+GGG | + | chr3_2:19801775-19801794 | Msa0398370:CDS | 50.0% | |
| GCTGTGGGACAAAGATTGGT+TGG | + | chr3_2:19802016-19802035 | Msa0398370:CDS | 50.0% | |
| ! | TGGGACAAAGATTGGTTGGC+AGG | + | chr3_2:19802020-19802039 | Msa0398370:CDS | 50.0% |
| TCTGCTCCTTTGCCAAATCC+AGG | + | chr3_2:19802108-19802127 | Msa0398370:CDS | 50.0% | |
| !! | GCCATGATGGACTTGTTGTG+AGG | - | chr3_2:19801768-19801787 | None:intergenic | 50.0% |
| AGTCCATCATGGCAAATGCC+GGG | + | chr3_2:19801775-19801794 | Msa0398370:CDS | 50.0% | |
| GCTGTGGGACAAAGATTGGT+TGG | + | chr3_2:19802016-19802035 | Msa0398370:CDS | 50.0% | |
| ! | TGGGACAAAGATTGGTTGGC+AGG | + | chr3_2:19802020-19802039 | Msa0398370:CDS | 50.0% |
| TCTGCTCCTTTGCCAAATCC+AGG | + | chr3_2:19802108-19802127 | Msa0398370:CDS | 50.0% | |
| GTCCATCATGGCAAATGCCG+GGG | + | chr3_2:19801776-19801795 | Msa0398370:CDS | 55.0% | |
| GTCCATCATGGCAAATGCCG+GGG | + | chr3_2:19801776-19801795 | Msa0398370:CDS | 55.0% | |
| GACCCCGGCATTTGCCATGA+TGG | - | chr3_2:19801781-19801800 | None:intergenic | 60.0% | |
| GACCCCGGCATTTGCCATGA+TGG | - | chr3_2:19801781-19801800 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 19801187 | 19802146 | 19801187 | ID=Msa0398370;Name=Msa0398370 |
| chr3_2 | mRNA | 19801187 | 19802146 | 19801187 | ID=Msa0398370-mRNA-1;Parent=Msa0398370;Name=Msa0398370-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|219 |
| chr3_2 | exon | 19801187 | 19801437 | 19801187 | ID=Msa0398370-mRNA-1:exon:4306;Parent=Msa0398370-mRNA-1 |
| chr3_2 | exon | 19801738 | 19802146 | 19801738 | ID=Msa0398370-mRNA-1:exon:4307;Parent=Msa0398370-mRNA-1 |
| chr3_2 | CDS | 19801187 | 19801437 | 19801187 | ID=Msa0398370-mRNA-1:cds;Parent=Msa0398370-mRNA-1 |
| chr3_2 | CDS | 19801738 | 19802146 | 19801738 | ID=Msa0398370-mRNA-1:cds;Parent=Msa0398370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
