Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399400 | XP_003599090.2 | 87.591 | 411 | 22 | 3 | 13 | 399 | 1 | 406 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399400 | sp|Q66GR3|BH130_ARATH | 30.732 | 410 | 183 | 17 | 32 | 393 | 1 | 357 | 2.76e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399400 | G7IWI2 | 87.591 | 411 | 22 | 3 | 13 | 399 | 1 | 406 | 0.0 | 726 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0399400 | Msa0493890 | 0.828838 | 7.196105e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399400 | MtrunA17_Chr3g0087771 | 87.591 | 411 | 22 | 3 | 13 | 399 | 1 | 406 | 0.0 | 726 |
| Msa0399400 | MtrunA17_Chr8g0351881 | 46.782 | 404 | 148 | 10 | 22 | 389 | 18 | 390 | 1.40e-89 | 276 |
| Msa0399400 | MtrunA17_Chr1g0174271 | 33.947 | 380 | 178 | 16 | 26 | 376 | 1 | 336 | 3.74e-34 | 130 |
| Msa0399400 | MtrunA17_Chr2g0329041 | 31.059 | 425 | 214 | 17 | 30 | 393 | 3 | 409 | 2.16e-31 | 123 |
| Msa0399400 | MtrunA17_Chr4g0032951 | 28.770 | 431 | 207 | 16 | 42 | 394 | 25 | 433 | 1.07e-28 | 116 |
| Msa0399400 | MtrunA17_Chr7g0258181 | 30.800 | 250 | 116 | 7 | 177 | 396 | 92 | 314 | 1.28e-22 | 97.4 |
| Msa0399400 | MtrunA17_Chr4g0014771 | 79.245 | 53 | 9 | 1 | 324 | 376 | 106 | 156 | 2.41e-20 | 88.2 |
| Msa0399400 | MtrunA17_Chr1g0213791 | 60.870 | 69 | 26 | 1 | 308 | 376 | 236 | 303 | 2.50e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399400 | AT2G42280.1 | 30.732 | 410 | 183 | 17 | 32 | 393 | 1 | 357 | 2.81e-29 | 117 |
| Msa0399400 | AT2G42280.3 | 31.742 | 356 | 168 | 15 | 43 | 376 | 15 | 317 | 6.29e-27 | 110 |
| Msa0399400 | AT1G51140.1 | 27.481 | 393 | 235 | 13 | 31 | 399 | 11 | 377 | 4.88e-25 | 105 |
| Msa0399400 | AT1G05805.1 | 31.250 | 352 | 181 | 13 | 39 | 376 | 17 | 321 | 2.11e-22 | 97.8 |
| Msa0399400 | AT2G43140.1 | 47.706 | 109 | 42 | 4 | 270 | 376 | 77 | 172 | 1.31e-21 | 92.4 |
| Msa0399400 | AT2G43140.2 | 48.148 | 108 | 43 | 4 | 270 | 376 | 174 | 269 | 9.35e-21 | 92.4 |
| Msa0399400 | AT1G35460.2 | 72.917 | 48 | 13 | 0 | 330 | 377 | 173 | 220 | 1.99e-17 | 81.3 |
| Msa0399400 | AT1G35460.1 | 48.810 | 84 | 20 | 1 | 333 | 393 | 176 | 259 | 3.13e-17 | 81.3 |
| Msa0399400 | AT2G42280.2 | 29.226 | 349 | 169 | 16 | 32 | 355 | 1 | 296 | 3.87e-17 | 81.6 |
| Msa0399400 | AT4G09180.1 | 41.667 | 132 | 52 | 5 | 279 | 395 | 133 | 254 | 1.54e-16 | 79.3 |
Find 75 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATACCTTATCTGATTT+TGG | 0.030579 | 3_2:+22743254 | None:intergenic |
| CTAGCTTCACCAATGAATTT+TGG | 0.135326 | 3_2:-22743681 | Msa0399400:CDS |
| CTTGATTCTGTCACTAATTC+TGG | 0.137372 | 3_2:+22743295 | None:intergenic |
| ACCCTCTCTGCAATGCTTCT+TGG | 0.180344 | 3_2:+22743427 | None:intergenic |
| GACTCTCAAGAAGCAGATTT+TGG | 0.193647 | 3_2:-22743586 | Msa0399400:CDS |
| TAATCCCTTTAGATAGAAAA+TGG | 0.201479 | 3_2:-22742663 | Msa0399400:three_prime_UTR |
| TACTTGAAGAATCCATTTCT+TGG | 0.275479 | 3_2:+22745207 | None:intergenic |
| CACTTTCTACAACAAAATTC+TGG | 0.277633 | 3_2:-22745167 | Msa0399400:CDS |
| AAGCTAAAGGACTTGAAGTT+TGG | 0.289476 | 3_2:-22745711 | Msa0399400:five_prime_UTR |
| GATTCTAATCAATCTAAAAT+TGG | 0.295488 | 3_2:-22744783 | Msa0399400:CDS |
| ATCAAGAAAGATTCTCTATA+AGG | 0.308199 | 3_2:-22745642 | Msa0399400:intron |
| ATGCCACAAATAGCTGAAAA+TGG | 0.316152 | 3_2:-22743781 | Msa0399400:CDS |
| TTTGAGCGTTGTTGTCGATT+AGG | 0.323950 | 3_2:+22745102 | None:intergenic |
| TTTGTAGTTTGGTCACAATT+TGG | 0.335830 | 3_2:+22743742 | None:intergenic |
| AATTACACAATTGCAAACTA+TGG | 0.337384 | 3_2:+22742595 | None:intergenic |
| GGGAATGGTAATTACTCTTA+TGG | 0.342347 | 3_2:-22744897 | Msa0399400:CDS |
| AGTGCTTTAATCAAGCTAAA+AGG | 0.343571 | 3_2:+22742493 | None:intergenic |
| ACAAACCTAGTAAATGAAAA+TGG | 0.344072 | 3_2:-22743724 | Msa0399400:CDS |
| CAACCACATAAGTCGCATTT+CGG | 0.345028 | 3_2:+22745533 | None:intergenic |
| CATTTACTAGGTTTGTAGTT+TGG | 0.361798 | 3_2:+22743731 | None:intergenic |
| TATTTGCCTAGTATGAGTTT+AGG | 0.365769 | 3_2:-22742555 | Msa0399400:three_prime_UTR |
| GAAGCTAGGTATGTGACTTT+TGG | 0.365896 | 3_2:+22743696 | None:intergenic |
| GGAATTGCTCCAGTCTTATT+AGG | 0.367791 | 3_2:-22744755 | Msa0399400:CDS |
| GCAGATACTCACAGATTGTA+AGG | 0.393985 | 3_2:-22742741 | Msa0399400:intron |
| TGTAAAATTCGAGCGAAAAG+AGG | 0.401428 | 3_2:-22743463 | Msa0399400:CDS |
| AAGCCTGTGAAGCAAGAAAT+AGG | 0.413405 | 3_2:-22744936 | Msa0399400:CDS |
| TCCATCCACAAGTTCAGAAA+TGG | 0.418988 | 3_2:-22745036 | Msa0399400:CDS |
| AGAATTGTTCCATCCATTGT+TGG | 0.420159 | 3_2:+22744986 | None:intergenic |
| AGAATTGTCCCAAAATTCAT+TGG | 0.420165 | 3_2:+22743672 | None:intergenic |
| TTCTACTAAGATGACATCTA+TGG | 0.437415 | 3_2:-22743518 | Msa0399400:CDS |
| ATCAATCTAAAATTGGTGTT+AGG | 0.437757 | 3_2:-22744776 | Msa0399400:CDS |
| TCACCTATTTCTTGCTTCAC+AGG | 0.439004 | 3_2:+22744933 | None:intergenic |
| GCTAAGAAGAAACCAAGAAA+TGG | 0.440153 | 3_2:-22745219 | Msa0399400:CDS |
| CAGAACCATTTGAAAAGCCT+TGG | 0.447461 | 3_2:+22744856 | None:intergenic |
| AATCCCTTTAGATAGAAAAT+GGG | 0.462946 | 3_2:-22742662 | Msa0399400:three_prime_UTR |
| ACTTCGAATATTTAAACTCA+TGG | 0.464049 | 3_2:+22745420 | None:intergenic |
| AAAGCCAATGGCATCTCAAA+TGG | 0.469024 | 3_2:-22743847 | Msa0399400:CDS |
| GGCCATTTACTAGCTTGAAA+AGG | 0.469996 | 3_2:-22743804 | Msa0399400:CDS |
| GTACACTTAACTTCTCATCT+AGG | 0.475567 | 3_2:-22743825 | Msa0399400:CDS |
| CGAAGAATCTCTTACAAATG+AGG | 0.481362 | 3_2:-22745066 | Msa0399400:CDS |
| AGGTAATTGTATAAGTAAGA+TGG | 0.481473 | 3_2:-22745258 | Msa0399400:CDS |
| AAGCTAGTATTGATTACAAA+AGG | 0.482407 | 3_2:-22745672 | Msa0399400:five_prime_UTR |
| TCCAAGAAGCATTGCAGAGA+GGG | 0.485454 | 3_2:-22743428 | Msa0399400:intron |
| TGTCAGACTCAAGAAGCTAA+AGG | 0.519283 | 3_2:-22745724 | Msa0399400:five_prime_UTR |
| AGGTTTGTAAACAATGAGGT+TGG | 0.522294 | 3_2:+22745122 | None:intergenic |
| GAATCTGTTGCTCAAGGGAA+TGG | 0.525214 | 3_2:-22744912 | Msa0399400:CDS |
| TGTACCATTTGAGATGCCAT+TGG | 0.531059 | 3_2:+22743843 | None:intergenic |
| TCCATTTCTGAACTTGTGGA+TGG | 0.533029 | 3_2:+22745035 | None:intergenic |
| TATGGACCTAAACTCATACT+AGG | 0.534198 | 3_2:+22742549 | None:intergenic |
| AACAAAATTCTGGACTAATG+AGG | 0.536728 | 3_2:-22745157 | Msa0399400:CDS |
| ATAGGTGAATCTGTTGCTCA+AGG | 0.537601 | 3_2:-22744918 | Msa0399400:CDS |
| TGATATCATCCAACAATGGA+TGG | 0.538943 | 3_2:-22744995 | Msa0399400:CDS |
| GTAAAATTCGAGCGAAAAGA+GGG | 0.539222 | 3_2:-22743462 | Msa0399400:CDS |
| GGTAATTGTATAAGTAAGAT+GGG | 0.539708 | 3_2:-22745257 | Msa0399400:CDS |
| GGTATCCATTTCTGAACTTG+TGG | 0.545880 | 3_2:+22745031 | None:intergenic |
| CAAAATTCATTGGTGAAGCT+AGG | 0.555453 | 3_2:+22743682 | None:intergenic |
| GTAGAAAGCTTTAAAGCCAA+TGG | 0.573198 | 3_2:-22743859 | Msa0399400:CDS |
| GGATCTGAGTTTATTTACCA+AGG | 0.576805 | 3_2:-22744873 | Msa0399400:CDS |
| TAGGTGAATCTGTTGCTCAA+GGG | 0.584454 | 3_2:-22744917 | Msa0399400:CDS |
| TGATATCAACTTGGATAACA+TGG | 0.587600 | 3_2:+22745010 | None:intergenic |
| GAAGAATCTCTTACAAATGA+GGG | 0.589972 | 3_2:-22745065 | Msa0399400:CDS |
| ATTGTTGGATGATATCAACT+TGG | 0.590635 | 3_2:+22745001 | None:intergenic |
| AATGGTAATTACTCTTATGG+TGG | 0.595599 | 3_2:-22744894 | Msa0399400:CDS |
| AAGGGATTAAATCAGCTACA+AGG | 0.598091 | 3_2:+22742677 | None:intergenic |
| GACAGAATCAAGAAACTGCA+AGG | 0.604322 | 3_2:-22743284 | Msa0399400:CDS |
| TGCAACATTGACGTTGAGAG+AGG | 0.614366 | 3_2:-22743881 | Msa0399400:CDS |
| GATTAGGTTTGTAAACAATG+AGG | 0.615343 | 3_2:+22745118 | None:intergenic |
| TGGCCGAAATGCGACTTATG+TGG | 0.617412 | 3_2:-22745536 | Msa0399400:five_prime_UTR |
| CAAGAGAGGAAGCAAAGAGG+AGG | 0.626602 | 3_2:+22745784 | None:intergenic |
| GTCATCTTAGTAGAAGAACT+AGG | 0.642089 | 3_2:+22743526 | None:intergenic |
| AGACAAGAGAGGAAGCAAAG+AGG | 0.659513 | 3_2:+22745781 | None:intergenic |
| AAGTTGATATCATCCAACAA+TGG | 0.670047 | 3_2:-22744999 | Msa0399400:CDS |
| AACAGTGTAAGAGACAAGAG+AGG | 0.685319 | 3_2:+22745770 | None:intergenic |
| ATCCAAGAAGCATTGCAGAG+AGG | 0.687513 | 3_2:-22743429 | Msa0399400:CDS |
| GCGGTCTGCAACTATAATTG+CGG | 0.694931 | 3_2:+22745452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTATGC+AGG | - | chr3_2:22742955-22742974 | Msa0399400:intron | 10.0% |
| !!! | CTAATTTTAGTTTTAAATTG+TGG | - | chr3_2:22742671-22742690 | Msa0399400:exon | 15.0% |
| !! | TATGTAGTTTATATACATTT+CGG | - | chr3_2:22745267-22745286 | Msa0399400:intron | 15.0% |
| !!! | GTTTATTCTTTTCATTTTTA+GGG | + | chr3_2:22745411-22745430 | None:intergenic | 15.0% |
| !!! | TGTTTATTCTTTTCATTTTT+AGG | + | chr3_2:22745412-22745431 | None:intergenic | 15.0% |
| !! | AATTGAAAAACAAAACTTTA+TGG | + | chr3_2:22745705-22745724 | None:intergenic | 15.0% |
| !!! | GATTCTAATCAATCTAAAAT+TGG | - | chr3_2:22743450-22743469 | Msa0399400:CDS | 20.0% |
| !!! | TTTTTACCCTATAGTAATTA+TGG | - | chr3_2:22743589-22743608 | Msa0399400:CDS | 20.0% |
| !! | AACATACCATAATTACTATA+GGG | + | chr3_2:22743598-22743617 | None:intergenic | 20.0% |
| !! | AAACATACCATAATTACTAT+AGG | + | chr3_2:22743599-22743618 | None:intergenic | 20.0% |
| !! | TATAGTAATTATGGTATGTT+TGG | - | chr3_2:22743598-22743617 | Msa0399400:CDS | 20.0% |
| !!! | ATTGTTCATTTGTTTTATCT+TGG | + | chr3_2:22743937-22743956 | None:intergenic | 20.0% |
| !! | AGATAAAACAAATGAACAAT+TGG | - | chr3_2:22743937-22743956 | Msa0399400:intron | 20.0% |
| !!! | TGAATACTTTTATGAATTGA+AGG | - | chr3_2:22744326-22744345 | Msa0399400:intron | 20.0% |
| !!! | ATAATGTTTTCTACTTCAAA+TGG | - | chr3_2:22744620-22744639 | Msa0399400:intron | 20.0% |
| !! | TATGTTAATCTGAAAATTTC+AGG | - | chr3_2:22744906-22744925 | Msa0399400:CDS | 20.0% |
| !!! | AAAATACCTTATCTGATTTT+GGG | + | chr3_2:22744981-22745000 | None:intergenic | 20.0% |
| !!! | TAAAATACCTTATCTGATTT+TGG | + | chr3_2:22744982-22745001 | None:intergenic | 20.0% |
| !!! | TTTAAAGTTATTACTGATGT+CGG | + | chr3_2:22745160-22745179 | None:intergenic | 20.0% |
| !!! | TTAGACATTATAGATTTTGA+TGG | + | chr3_2:22745452-22745471 | None:intergenic | 20.0% |
| !!! | TGTAATCAATACTAGCTTTT+TGG | + | chr3_2:22742559-22742578 | None:intergenic | 25.0% |
| !!! | AAGCTAGTATTGATTACAAA+AGG | - | chr3_2:22742561-22742580 | Msa0399400:three_prime_UTR | 25.0% |
| ! | ATCAAGAAAGATTCTCTATA+AGG | - | chr3_2:22742591-22742610 | Msa0399400:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTAAATTGTGGTTG+TGG | - | chr3_2:22742677-22742696 | Msa0399400:exon | 25.0% |
| !!! | AAACTCATGGTTTTATATTG+CGG | + | chr3_2:22742803-22742822 | None:intergenic | 25.0% |
| ! | ACTTCGAATATTTAAACTCA+TGG | + | chr3_2:22742816-22742835 | None:intergenic | 25.0% |
| ! | AGGTAATTGTATAAGTAAGA+TGG | - | chr3_2:22742975-22742994 | Msa0399400:intron | 25.0% |
| ! | GGTAATTGTATAAGTAAGAT+GGG | - | chr3_2:22742976-22742995 | Msa0399400:intron | 25.0% |
| !! | ATCAATCTAAAATTGGTGTT+AGG | - | chr3_2:22743457-22743476 | Msa0399400:CDS | 25.0% |
| !! | GAGTTTTTCTCTAATGAAAA+TGG | - | chr3_2:22743519-22743538 | Msa0399400:CDS | 25.0% |
| ! | TAATTATGGTATGTTTGGAT+TGG | - | chr3_2:22743603-22743622 | Msa0399400:CDS | 25.0% |
| ! | AGCTTATAAAAACAGCTTAT+AGG | - | chr3_2:22743743-22743762 | Msa0399400:CDS | 25.0% |
| ! | ATGAAAAATATAAGTGCAGA+AGG | - | chr3_2:22744033-22744052 | Msa0399400:intron | 25.0% |
| ! | TTAACATATAAAGTACGACA+TGG | - | chr3_2:22744118-22744137 | Msa0399400:intron | 25.0% |
| ! | TCAAAATAAGTCAAACAGTT+TGG | + | chr3_2:22744301-22744320 | None:intergenic | 25.0% |
| ! | ACAAACCTAGTAAATGAAAA+TGG | - | chr3_2:22744509-22744528 | Msa0399400:intron | 25.0% |
| !! | GAGAATTTTCTTGAAATTCA+AGG | - | chr3_2:22744737-22744756 | Msa0399400:CDS | 25.0% |
| ! | ACATAGGCTTAATAATAGTA+TGG | + | chr3_2:22744869-22744888 | None:intergenic | 25.0% |
| ! | TAATCCCTTTAGATAGAAAA+TGG | - | chr3_2:22745570-22745589 | Msa0399400:intron | 25.0% |
| ! | AATCCCTTTAGATAGAAAAT+GGG | - | chr3_2:22745571-22745590 | Msa0399400:intron | 25.0% |
| ! | AATTACACAATTGCAAACTA+TGG | + | chr3_2:22745641-22745660 | None:intergenic | 25.0% |
| TAACATGTTGAATTACCCTT+TGG | - | chr3_2:22742638-22742657 | Msa0399400:three_prime_UTR | 30.0% | |
| ATTAGACTCAAACTTCCAAA+GGG | + | chr3_2:22742656-22742675 | None:intergenic | 30.0% | |
| AATTAGACTCAAACTTCCAA+AGG | + | chr3_2:22742657-22742676 | None:intergenic | 30.0% | |
| ATTCGAAGTTATGACACAAA+AGG | - | chr3_2:22742827-22742846 | Msa0399400:intron | 30.0% | |
| AAAATTGCAACATAAATCCG+AGG | + | chr3_2:22742872-22742891 | None:intergenic | 30.0% | |
| !! | CAAAAAGTTGCTTAACTTGT+AGG | - | chr3_2:22742917-22742936 | Msa0399400:intron | 30.0% |
| TACTTGAAGAATCCATTTCT+TGG | + | chr3_2:22743029-22743048 | None:intergenic | 30.0% | |
| CACTTTCTACAACAAAATTC+TGG | - | chr3_2:22743066-22743085 | Msa0399400:intron | 30.0% | |
| AACAAAATTCTGGACTAATG+AGG | - | chr3_2:22743076-22743095 | Msa0399400:intron | 30.0% | |
| GATTAGGTTTGTAAACAATG+AGG | + | chr3_2:22743118-22743137 | None:intergenic | 30.0% | |
| GAAGAATCTCTTACAAATGA+GGG | - | chr3_2:22743168-22743187 | Msa0399400:intron | 30.0% | |
| TGATATCAACTTGGATAACA+TGG | + | chr3_2:22743226-22743245 | None:intergenic | 30.0% | |
| ATTGTTGGATGATATCAACT+TGG | + | chr3_2:22743235-22743254 | None:intergenic | 30.0% | |
| !! | AAGTTGATATCATCCAACAA+TGG | - | chr3_2:22743234-22743253 | Msa0399400:intron | 30.0% |
| AATGGTAATTACTCTTATGG+TGG | - | chr3_2:22743339-22743358 | Msa0399400:intron | 30.0% | |
| ! | ATTTACCAAGGCTTTTCAAA+TGG | - | chr3_2:22743372-22743391 | Msa0399400:intron | 30.0% |
| !!! | GCTGTTTTTATAAGCTATCT+AGG | + | chr3_2:22743739-22743758 | None:intergenic | 30.0% |
| ATATAAGTCAATATCCGAAC+AGG | - | chr3_2:22743842-22743861 | Msa0399400:CDS | 30.0% | |
| TATAAGTCAATATCCGAACA+GGG | - | chr3_2:22743843-22743862 | Msa0399400:CDS | 30.0% | |
| ACAATTGGACCAATATTTGT+TGG | - | chr3_2:22743952-22743971 | Msa0399400:intron | 30.0% | |
| AGCTTGATTCATCATTAGTA+AGG | - | chr3_2:22743989-22744008 | Msa0399400:intron | 30.0% | |
| TTCATCATTAGTAAGGTCTT+AGG | - | chr3_2:22743996-22744015 | Msa0399400:intron | 30.0% | |
| ATATAAAGTACGACATGGAT+AGG | - | chr3_2:22744123-22744142 | Msa0399400:intron | 30.0% | |
| !! | ATCCTTTTCAAGCTAGTAAA+TGG | + | chr3_2:22744434-22744453 | None:intergenic | 30.0% |
| ! | ATTCCATTTTCAGCTATTTG+TGG | + | chr3_2:22744458-22744477 | None:intergenic | 30.0% |
| TTTGTAGTTTGGTCACAATT+TGG | + | chr3_2:22744494-22744513 | None:intergenic | 30.0% | |
| CATTTACTAGGTTTGTAGTT+TGG | + | chr3_2:22744505-22744524 | None:intergenic | 30.0% | |
| ! | AGCTACCATTTTCATTTACT+AGG | + | chr3_2:22744517-22744536 | None:intergenic | 30.0% |
| ! | TAGCTTCACCAATGAATTTT+GGG | - | chr3_2:22744553-22744572 | Msa0399400:intron | 30.0% |
| AGAATTGTCCCAAAATTCAT+TGG | + | chr3_2:22744564-22744583 | None:intergenic | 30.0% | |
| ! | GTTTTCTACTTCAAATGGTT+TGG | - | chr3_2:22744625-22744644 | Msa0399400:intron | 30.0% |
| !!! | GATTTTGGCTATCAAAATCT+TGG | - | chr3_2:22744662-22744681 | Msa0399400:intron | 30.0% |
| TTCTACTAAGATGACATCTA+TGG | - | chr3_2:22744715-22744734 | Msa0399400:CDS | 30.0% | |
| ATGAAACTGTTGAATCACAT+AGG | + | chr3_2:22744885-22744904 | None:intergenic | 30.0% | |
| ! | TCTTTTCCCAAAATCAGATA+AGG | - | chr3_2:22744972-22744991 | Msa0399400:CDS | 30.0% |
| !! | CTTTTGAGAAAGTTAAAGTC+TGG | + | chr3_2:22745070-22745089 | None:intergenic | 30.0% |
| ! | ATGTCTTCAATCTAAAGTGT+CGG | - | chr3_2:22745241-22745260 | Msa0399400:CDS | 30.0% |
| !!! | TCTTTTCATTTTTAGGGCAA+AGG | + | chr3_2:22745405-22745424 | None:intergenic | 30.0% |
| TATTTGCCTAGTATGAGTTT+AGG | - | chr3_2:22745678-22745697 | Msa0399400:five_prime_UTR | 30.0% | |
| AGTGCTTTAATCAAGCTAAA+AGG | + | chr3_2:22745743-22745762 | None:intergenic | 30.0% | |
| AAGCTAAAGGACTTGAAGTT+TGG | - | chr3_2:22742522-22742541 | Msa0399400:three_prime_UTR | 35.0% | |
| GCTAAGAAGAAACCAAGAAA+TGG | - | chr3_2:22743014-22743033 | Msa0399400:intron | 35.0% | |
| AGGTTTGTAAACAATGAGGT+TGG | + | chr3_2:22743114-22743133 | None:intergenic | 35.0% | |
| CGAAGAATCTCTTACAAATG+AGG | - | chr3_2:22743167-22743186 | Msa0399400:intron | 35.0% | |
| TGATATCATCCAACAATGGA+TGG | - | chr3_2:22743238-22743257 | Msa0399400:intron | 35.0% | |
| AGAATTGTTCCATCCATTGT+TGG | + | chr3_2:22743250-22743269 | None:intergenic | 35.0% | |
| GGGAATGGTAATTACTCTTA+TGG | - | chr3_2:22743336-22743355 | Msa0399400:intron | 35.0% | |
| GGATCTGAGTTTATTTACCA+AGG | - | chr3_2:22743360-22743379 | Msa0399400:intron | 35.0% | |
| !!! | TTTTCAAATGGTTCTGGCAA+CGG | - | chr3_2:22743384-22743403 | Msa0399400:intron | 35.0% |
| ! | AACGGTTTTTATGGCTCTTT+TGG | - | chr3_2:22743402-22743421 | Msa0399400:intron | 35.0% |
| !!! | TTTTGGTGGAGTTGATACTA+TGG | - | chr3_2:22743419-22743438 | Msa0399400:intron | 35.0% |
| ! | ACTCTTTTGCCTAATAAGAC+TGG | + | chr3_2:22743490-22743509 | None:intergenic | 35.0% |
| TCATTAGAGAAAAACTCAGC+AGG | + | chr3_2:22743516-22743535 | None:intergenic | 35.0% | |
| ! | ACTATAGGGTAAAAAGCACA+CGG | + | chr3_2:22743584-22743603 | None:intergenic | 35.0% |
| TGAAAACATTAAGCCCTGTT+CGG | + | chr3_2:22743859-22743878 | None:intergenic | 35.0% | |
| CTACTTGGACCAACAAATAT+TGG | + | chr3_2:22743964-22743983 | None:intergenic | 35.0% | |
| GAATTTGTCCCTTGTATGAA+CGG | - | chr3_2:22744055-22744074 | Msa0399400:intron | 35.0% | |
| TTGAATGTAAGCACATGTGT+TGG | - | chr3_2:22744180-22744199 | Msa0399400:intron | 35.0% | |
| !! | GTAGAAAGCTTTAAAGCCAA+TGG | - | chr3_2:22744374-22744393 | Msa0399400:intron | 35.0% |
| GTACACTTAACTTCTCATCT+AGG | - | chr3_2:22744408-22744427 | Msa0399400:intron | 35.0% | |
| ATGCCACAAATAGCTGAAAA+TGG | - | chr3_2:22744452-22744471 | Msa0399400:intron | 35.0% | |
| CAAAATTCATTGGTGAAGCT+AGG | + | chr3_2:22744554-22744573 | None:intergenic | 35.0% | |
| ! | CTAGCTTCACCAATGAATTT+TGG | - | chr3_2:22744552-22744571 | Msa0399400:intron | 35.0% |
| GTCATCTTAGTAGAAGAACT+AGG | + | chr3_2:22744710-22744729 | None:intergenic | 35.0% | |
| ! | CTTTTCGCTCGAATTTTACA+AGG | + | chr3_2:22744770-22744789 | None:intergenic | 35.0% |
| TGTAAAATTCGAGCGAAAAG+AGG | - | chr3_2:22744770-22744789 | Msa0399400:CDS | 35.0% | |
| GTAAAATTCGAGCGAAAAGA+GGG | - | chr3_2:22744771-22744790 | Msa0399400:CDS | 35.0% | |
| CTTGATTCTGTCACTAATTC+TGG | + | chr3_2:22744941-22744960 | None:intergenic | 35.0% | |
| AGTAACGTAGTCACAGATAT+TGG | - | chr3_2:22745120-22745139 | Msa0399400:CDS | 35.0% | |
| CTTTAGATTGAAGACATGAC+CGG | + | chr3_2:22745238-22745257 | None:intergenic | 35.0% | |
| ! | AATTTTGCAGCAAACAAGCA+CGG | - | chr3_2:22745305-22745324 | Msa0399400:intron | 35.0% |
| AATCTGTGAGTATCTGCAAA+AGG | + | chr3_2:22745489-22745508 | None:intergenic | 35.0% | |
| AAGGGATTAAATCAGCTACA+AGG | + | chr3_2:22745559-22745578 | None:intergenic | 35.0% | |
| ! | GCTCCCATTTTCTATCTAAA+GGG | + | chr3_2:22745577-22745596 | None:intergenic | 35.0% |
| ! | TGCTCCCATTTTCTATCTAA+AGG | + | chr3_2:22745578-22745597 | None:intergenic | 35.0% |
| TATGGACCTAAACTCATACT+AGG | + | chr3_2:22745687-22745706 | None:intergenic | 35.0% | |
| AACAGTGTAAGAGACAAGAG+AGG | + | chr3_2:22742466-22742485 | None:intergenic | 40.0% | |
| TGTCAGACTCAAGAAGCTAA+AGG | - | chr3_2:22742509-22742528 | Msa0399400:three_prime_UTR | 40.0% | |
| CAACCACATAAGTCGCATTT+CGG | + | chr3_2:22742703-22742722 | None:intergenic | 40.0% | |
| ! | TTTGAGCGTTGTTGTCGATT+AGG | + | chr3_2:22743134-22743153 | None:intergenic | 40.0% |
| TCCATCCACAAGTTCAGAAA+TGG | - | chr3_2:22743197-22743216 | Msa0399400:intron | 40.0% | |
| TCCATTTCTGAACTTGTGGA+TGG | + | chr3_2:22743201-22743220 | None:intergenic | 40.0% | |
| GGTATCCATTTCTGAACTTG+TGG | + | chr3_2:22743205-22743224 | None:intergenic | 40.0% | |
| AAGCCTGTGAAGCAAGAAAT+AGG | - | chr3_2:22743297-22743316 | Msa0399400:CDS | 40.0% | |
| ! | TCACCTATTTCTTGCTTCAC+AGG | + | chr3_2:22743303-22743322 | None:intergenic | 40.0% |
| ATAGGTGAATCTGTTGCTCA+AGG | - | chr3_2:22743315-22743334 | Msa0399400:intron | 40.0% | |
| TAGGTGAATCTGTTGCTCAA+GGG | - | chr3_2:22743316-22743335 | Msa0399400:intron | 40.0% | |
| CAGAACCATTTGAAAAGCCT+TGG | + | chr3_2:22743380-22743399 | None:intergenic | 40.0% | |
| ! | CAAGGCTTTTCAAATGGTTC+TGG | - | chr3_2:22743378-22743397 | Msa0399400:intron | 40.0% |
| ! | GGTTTTTATGGCTCTTTTGG+TGG | - | chr3_2:22743405-22743424 | Msa0399400:intron | 40.0% |
| !! | GGAATTGCTCCAGTCTTATT+AGG | - | chr3_2:22743478-22743497 | Msa0399400:CDS | 40.0% |
| AAGCTATCTAGGAGAGCTTA+AGG | + | chr3_2:22743728-22743747 | None:intergenic | 40.0% | |
| ! | ATTTGTTGGTCCAAGTAGCT+AGG | - | chr3_2:22743966-22743985 | Msa0399400:intron | 40.0% |
| AAAGCCAATGGCATCTCAAA+TGG | - | chr3_2:22744386-22744405 | Msa0399400:intron | 40.0% | |
| ! | TGTACCATTTGAGATGCCAT+TGG | + | chr3_2:22744393-22744412 | None:intergenic | 40.0% |
| ! | GGCCATTTACTAGCTTGAAA+AGG | - | chr3_2:22744429-22744448 | Msa0399400:intron | 40.0% |
| ! | GAAGCTAGGTATGTGACTTT+TGG | + | chr3_2:22744540-22744559 | None:intergenic | 40.0% |
| ! | GACTCTCAAGAAGCAGATTT+TGG | - | chr3_2:22744647-22744666 | Msa0399400:intron | 40.0% |
| GACAGAATCAAGAAACTGCA+AGG | - | chr3_2:22744949-22744968 | Msa0399400:CDS | 40.0% | |
| AGACCTACAAGAACAAGTTC+AGG | - | chr3_2:22745362-22745381 | Msa0399400:intron | 40.0% | |
| ! | GTACCTGAACTTGTTCTTGT+AGG | + | chr3_2:22745368-22745387 | None:intergenic | 40.0% |
| GCAGATACTCACAGATTGTA+AGG | - | chr3_2:22745492-22745511 | Msa0399400:five_prime_UTR | 40.0% | |
| AGACAAGAGAGGAAGCAAAG+AGG | + | chr3_2:22742455-22742474 | None:intergenic | 45.0% | |
| GCGGTCTGCAACTATAATTG+CGG | + | chr3_2:22742784-22742803 | None:intergenic | 45.0% | |
| TTAAATTGCAGTCGCAGCCT+CGG | - | chr3_2:22742852-22742871 | Msa0399400:intron | 45.0% | |
| GAATCTGTTGCTCAAGGGAA+TGG | - | chr3_2:22743321-22743340 | Msa0399400:intron | 45.0% | |
| !! | GGTTCTGGCAACGGTTTTTA+TGG | - | chr3_2:22743393-22743412 | Msa0399400:intron | 45.0% |
| !! | GGCTTGTTGAGCTTATCTAC+TGG | - | chr3_2:22743624-22743643 | Msa0399400:CDS | 45.0% |
| GAATCAAGCTCCTAGCTACT+TGG | + | chr3_2:22743979-22743998 | None:intergenic | 45.0% | |
| TGCAACATTGACGTTGAGAG+AGG | - | chr3_2:22744352-22744371 | Msa0399400:intron | 45.0% | |
| !! | ATCCAAGAAGCATTGCAGAG+AGG | - | chr3_2:22744804-22744823 | Msa0399400:CDS | 45.0% |
| !! | TCCAAGAAGCATTGCAGAGA+GGG | - | chr3_2:22744805-22744824 | Msa0399400:CDS | 45.0% |
| AACAAGCACGGCAGATATGT+TGG | - | chr3_2:22745317-22745336 | Msa0399400:intron | 45.0% | |
| CACGGCAGATATGTTGGATT+TGG | - | chr3_2:22745323-22745342 | Msa0399400:intron | 45.0% | |
| TGGCCGAAATGCGACTTATG+TGG | - | chr3_2:22742697-22742716 | Msa0399400:CDS | 50.0% | |
| TGTCCCTTGTATGAACGGCT+AGG | - | chr3_2:22744060-22744079 | Msa0399400:intron | 50.0% | |
| GTCCCTTGTATGAACGGCTA+GGG | - | chr3_2:22744061-22744080 | Msa0399400:intron | 50.0% | |
| GACCCTAGCCGTTCATACAA+GGG | + | chr3_2:22744066-22744085 | None:intergenic | 50.0% | |
| TGACCCTAGCCGTTCATACA+AGG | + | chr3_2:22744067-22744086 | None:intergenic | 50.0% | |
| ACCCTCTCTGCAATGCTTCT+TGG | + | chr3_2:22744809-22744828 | None:intergenic | 50.0% | |
| AGACGCCACTTGTCATGCAC+CGG | - | chr3_2:22745216-22745235 | Msa0399400:CDS | 55.0% | |
| CATGACCGGTGCATGACAAG+TGG | + | chr3_2:22745224-22745243 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 22742450 | 22745805 | 22742450 | ID=Msa0399400;Name=Msa0399400 |
| chr3_2 | mRNA | 22742450 | 22745805 | 22742450 | ID=Msa0399400-mRNA-1;Parent=Msa0399400;Name=Msa0399400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=284|0.8|1|1|0.6|0.5|6|238|399 |
| chr3_2 | exon | 22742450 | 22742759 | 22742450 | ID=Msa0399400-mRNA-1:exon:4821;Parent=Msa0399400-mRNA-1 |
| chr3_2 | exon | 22743262 | 22743327 | 22743262 | ID=Msa0399400-mRNA-1:exon:4820;Parent=Msa0399400-mRNA-1 |
| chr3_2 | exon | 22743429 | 22743907 | 22743429 | ID=Msa0399400-mRNA-1:exon:4819;Parent=Msa0399400-mRNA-1 |
| chr3_2 | exon | 22744715 | 22745278 | 22744715 | ID=Msa0399400-mRNA-1:exon:4818;Parent=Msa0399400-mRNA-1 |
| chr3_2 | exon | 22745422 | 22745561 | 22745422 | ID=Msa0399400-mRNA-1:exon:4817;Parent=Msa0399400-mRNA-1 |
| chr3_2 | exon | 22745643 | 22745805 | 22745643 | ID=Msa0399400-mRNA-1:exon:4816;Parent=Msa0399400-mRNA-1 |
| chr3_2 | five_prime_UTR | 22745643 | 22745805 | 22745643 | ID=Msa0399400-mRNA-1:five_prime_utr;Parent=Msa0399400-mRNA-1 |
| chr3_2 | five_prime_UTR | 22745441 | 22745561 | 22745441 | ID=Msa0399400-mRNA-1:five_prime_utr;Parent=Msa0399400-mRNA-1 |
| chr3_2 | CDS | 22745422 | 22745440 | 22745422 | ID=Msa0399400-mRNA-1:cds;Parent=Msa0399400-mRNA-1 |
| chr3_2 | CDS | 22744715 | 22745278 | 22744715 | ID=Msa0399400-mRNA-1:cds;Parent=Msa0399400-mRNA-1 |
| chr3_2 | CDS | 22743429 | 22743907 | 22743429 | ID=Msa0399400-mRNA-1:cds;Parent=Msa0399400-mRNA-1 |
| chr3_2 | CDS | 22743262 | 22743327 | 22743262 | ID=Msa0399400-mRNA-1:cds;Parent=Msa0399400-mRNA-1 |
| chr3_2 | CDS | 22742688 | 22742759 | 22742688 | ID=Msa0399400-mRNA-1:cds;Parent=Msa0399400-mRNA-1 |
| chr3_2 | three_prime_UTR | 22742450 | 22742687 | 22742450 | ID=Msa0399400-mRNA-1:three_prime_utr;Parent=Msa0399400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
