Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0493890 | XP_003599090.2 | 94.161 | 411 | 19 | 1 | 16 | 426 | 1 | 406 | 0.0 | 799 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0493890 | sp|Q66GR3|BH130_ARATH | 36.010 | 386 | 188 | 14 | 49 | 420 | 17 | 357 | 3.53e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0493890 | G7IWI2 | 94.161 | 411 | 19 | 1 | 16 | 426 | 1 | 406 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0493890 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0399400 | Msa0493890 | 0.828838 | 7.196105e-55 | -8.615850e-47 |
| Msa0493890 | Msa1176720 | 0.810757 | 9.833718e-51 | -8.615850e-47 |
| Msa0493890 | Msa1231840 | 0.815474 | 9.074619e-52 | -8.615850e-47 |
| Msa0493890 | Msa1280340 | 0.811352 | 7.309358e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0493890 | MtrunA17_Chr3g0087771 | 94.161 | 411 | 19 | 1 | 16 | 426 | 1 | 406 | 0.0 | 799 |
| Msa0493890 | MtrunA17_Chr8g0351881 | 50.617 | 405 | 155 | 10 | 25 | 416 | 18 | 390 | 2.77e-106 | 319 |
| Msa0493890 | MtrunA17_Chr1g0174271 | 35.749 | 414 | 194 | 16 | 29 | 414 | 1 | 370 | 1.50e-52 | 180 |
| Msa0493890 | MtrunA17_Chr2g0329041 | 36.792 | 424 | 215 | 19 | 35 | 420 | 1 | 409 | 3.12e-50 | 175 |
| Msa0493890 | MtrunA17_Chr4g0032951 | 33.565 | 432 | 209 | 16 | 45 | 421 | 25 | 433 | 2.65e-47 | 167 |
| Msa0493890 | MtrunA17_Chr7g0258181 | 37.849 | 251 | 112 | 6 | 181 | 414 | 92 | 315 | 5.48e-41 | 148 |
| Msa0493890 | MtrunA17_Chr4g0014771 | 68.235 | 85 | 27 | 0 | 334 | 418 | 110 | 194 | 4.29e-34 | 125 |
| Msa0493890 | MtrunA17_Chr1g0213791 | 60.577 | 104 | 40 | 1 | 312 | 415 | 236 | 338 | 6.55e-31 | 121 |
| Msa0493890 | MtrunA17_Chr4g0074161 | 54.545 | 66 | 29 | 1 | 341 | 406 | 205 | 269 | 5.72e-15 | 76.3 |
| Msa0493890 | MtrunA17_Chr3g0131771 | 53.846 | 65 | 30 | 0 | 342 | 406 | 147 | 211 | 4.24e-14 | 73.2 |
| Msa0493890 | MtrunA17_Chr1g0190731 | 47.727 | 88 | 38 | 3 | 319 | 406 | 177 | 256 | 2.46e-13 | 70.9 |
| Msa0493890 | MtrunA17_Chr8g0339091 | 50.769 | 65 | 32 | 0 | 342 | 406 | 291 | 355 | 4.47e-13 | 70.9 |
| Msa0493890 | MtrunA17_Chr7g0234761 | 50.769 | 65 | 32 | 0 | 342 | 406 | 317 | 381 | 4.52e-13 | 70.9 |
| Msa0493890 | MtrunA17_Chr1g0152131 | 47.761 | 67 | 35 | 0 | 340 | 406 | 258 | 324 | 5.22e-13 | 70.5 |
| Msa0493890 | MtrunA17_Chr8g0365941 | 50.769 | 65 | 32 | 0 | 342 | 406 | 305 | 369 | 6.33e-13 | 70.5 |
| Msa0493890 | MtrunA17_Chr3g0144641 | 50.769 | 65 | 32 | 0 | 342 | 406 | 191 | 255 | 7.09e-13 | 69.7 |
| Msa0493890 | MtrunA17_Chr5g0421111 | 43.011 | 93 | 48 | 1 | 319 | 406 | 337 | 429 | 1.98e-12 | 68.9 |
| Msa0493890 | MtrunA17_Chr4g0035101 | 46.053 | 76 | 39 | 1 | 333 | 406 | 132 | 207 | 3.40e-12 | 67.4 |
| Msa0493890 | MtrunA17_Chr8g0385911 | 49.231 | 65 | 33 | 0 | 342 | 406 | 145 | 209 | 3.81e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0493890 | AT2G42280.1 | 36.010 | 386 | 188 | 14 | 49 | 420 | 17 | 357 | 3.59e-47 | 166 |
| Msa0493890 | AT1G51140.1 | 31.726 | 394 | 232 | 12 | 34 | 416 | 11 | 378 | 4.44e-43 | 155 |
| Msa0493890 | AT2G42280.3 | 34.865 | 370 | 182 | 13 | 49 | 404 | 17 | 341 | 3.50e-40 | 147 |
| Msa0493890 | AT2G43140.1 | 50.336 | 149 | 59 | 4 | 274 | 420 | 77 | 212 | 2.94e-38 | 138 |
| Msa0493890 | AT1G05805.1 | 34.109 | 387 | 194 | 14 | 47 | 419 | 21 | 360 | 2.32e-37 | 139 |
| Msa0493890 | AT2G43140.2 | 50.676 | 148 | 60 | 4 | 274 | 420 | 174 | 309 | 2.65e-37 | 138 |
| Msa0493890 | AT1G35460.1 | 67.857 | 84 | 27 | 0 | 337 | 420 | 176 | 259 | 2.20e-33 | 126 |
| Msa0493890 | AT4G09180.1 | 49.286 | 140 | 59 | 3 | 283 | 420 | 133 | 262 | 7.33e-32 | 122 |
| Msa0493890 | AT2G42280.2 | 30.154 | 325 | 168 | 13 | 49 | 359 | 17 | 296 | 5.71e-17 | 81.6 |
| Msa0493890 | AT1G35460.2 | 72.000 | 50 | 14 | 0 | 334 | 383 | 173 | 222 | 6.48e-17 | 80.1 |
| Msa0493890 | AT2G24260.2 | 56.061 | 66 | 28 | 1 | 341 | 406 | 34 | 98 | 2.09e-15 | 75.9 |
| Msa0493890 | AT5G58010.1 | 48.235 | 85 | 33 | 3 | 332 | 406 | 79 | 162 | 6.37e-15 | 75.5 |
| Msa0493890 | AT2G24260.1 | 55.224 | 67 | 29 | 1 | 340 | 406 | 136 | 201 | 6.55e-15 | 76.3 |
| Msa0493890 | AT4G30980.1 | 54.545 | 66 | 29 | 1 | 341 | 406 | 129 | 193 | 1.34e-14 | 74.7 |
| Msa0493890 | AT4G30980.2 | 54.545 | 66 | 29 | 1 | 341 | 406 | 177 | 241 | 1.67e-14 | 75.1 |
| Msa0493890 | AT4G34530.1 | 52.308 | 65 | 31 | 0 | 342 | 406 | 172 | 236 | 1.17e-13 | 72.0 |
| Msa0493890 | AT5G50915.1 | 50.769 | 65 | 32 | 0 | 342 | 406 | 136 | 200 | 3.39e-13 | 70.1 |
| Msa0493890 | AT5G50915.2 | 50.769 | 65 | 32 | 0 | 342 | 406 | 136 | 200 | 3.39e-13 | 70.1 |
| Msa0493890 | AT5G50915.3 | 50.769 | 65 | 32 | 0 | 342 | 406 | 136 | 200 | 3.97e-13 | 69.7 |
| Msa0493890 | AT5G50915.4 | 50.769 | 65 | 32 | 0 | 342 | 406 | 136 | 200 | 3.97e-13 | 69.7 |
| Msa0493890 | AT1G25330.1 | 47.692 | 65 | 34 | 0 | 342 | 406 | 104 | 168 | 7.31e-13 | 68.2 |
| Msa0493890 | AT1G68920.3 | 50.769 | 65 | 32 | 0 | 342 | 406 | 302 | 366 | 9.12e-13 | 70.5 |
| Msa0493890 | AT1G68920.1 | 50.769 | 65 | 32 | 0 | 342 | 406 | 303 | 367 | 9.39e-13 | 70.1 |
| Msa0493890 | AT1G68920.4 | 50.769 | 65 | 32 | 0 | 342 | 406 | 303 | 367 | 9.39e-13 | 70.1 |
| Msa0493890 | AT1G68920.2 | 50.769 | 65 | 32 | 0 | 342 | 406 | 303 | 367 | 9.39e-13 | 70.1 |
| Msa0493890 | AT3G07340.1 | 50.769 | 65 | 32 | 0 | 342 | 406 | 258 | 322 | 1.52e-12 | 69.7 |
| Msa0493890 | AT3G07340.2 | 50.769 | 65 | 32 | 0 | 342 | 406 | 258 | 322 | 1.63e-12 | 69.3 |
| Msa0493890 | AT1G26260.5 | 50.769 | 65 | 32 | 0 | 342 | 406 | 201 | 265 | 1.76e-12 | 68.9 |
| Msa0493890 | AT1G26260.4 | 50.769 | 65 | 32 | 0 | 342 | 406 | 223 | 287 | 1.89e-12 | 68.9 |
| Msa0493890 | AT1G26260.1 | 50.769 | 65 | 32 | 0 | 342 | 406 | 223 | 287 | 1.89e-12 | 68.9 |
| Msa0493890 | AT1G26260.6 | 50.769 | 65 | 32 | 0 | 342 | 406 | 223 | 287 | 1.89e-12 | 68.9 |
| Msa0493890 | AT1G26260.2 | 50.769 | 65 | 32 | 0 | 342 | 406 | 223 | 287 | 1.89e-12 | 68.9 |
| Msa0493890 | AT1G26260.3 | 50.769 | 65 | 32 | 0 | 342 | 406 | 172 | 236 | 2.04e-12 | 68.6 |
| Msa0493890 | AT1G10120.2 | 41.379 | 87 | 43 | 1 | 320 | 406 | 192 | 270 | 3.14e-12 | 68.2 |
| Msa0493890 | AT1G10120.1 | 41.379 | 87 | 43 | 1 | 320 | 406 | 192 | 270 | 3.14e-12 | 68.2 |
| Msa0493890 | AT5G48560.1 | 49.231 | 65 | 33 | 0 | 342 | 406 | 301 | 365 | 4.49e-12 | 68.2 |
| Msa0493890 | AT5G48560.2 | 49.231 | 65 | 33 | 0 | 342 | 406 | 301 | 365 | 5.06e-12 | 67.8 |
| Msa0493890 | AT4G36540.2 | 41.463 | 82 | 48 | 0 | 325 | 406 | 124 | 205 | 1.06e-11 | 65.9 |
| Msa0493890 | AT4G36540.1 | 41.463 | 82 | 48 | 0 | 325 | 406 | 124 | 205 | 1.07e-11 | 65.9 |
| Msa0493890 | AT1G73830.2 | 47.692 | 65 | 34 | 0 | 342 | 406 | 147 | 211 | 1.54e-11 | 64.7 |
| Msa0493890 | AT1G73830.1 | 47.692 | 65 | 34 | 0 | 342 | 406 | 147 | 211 | 1.65e-11 | 64.7 |
| Msa0493890 | AT2G18300.1 | 46.154 | 65 | 35 | 0 | 342 | 406 | 185 | 249 | 8.73e-11 | 63.5 |
| Msa0493890 | AT2G18300.2 | 46.154 | 65 | 35 | 0 | 342 | 406 | 185 | 249 | 8.99e-11 | 63.5 |
| Msa0493890 | AT2G18300.3 | 46.154 | 65 | 35 | 0 | 342 | 406 | 185 | 249 | 9.44e-11 | 63.5 |
Find 75 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATACCTTATCTGATTT+TGG | 0.030579 | 3_4:+21024185 | None:intergenic |
| CTAGCTTCACCAATGAATTT+TGG | 0.135326 | 3_4:-21024612 | Msa0493890:CDS |
| CTTGATTCTGTCACTAATTC+TGG | 0.137372 | 3_4:+21024226 | None:intergenic |
| ACCCTCTCTGCTATGCTTCT+TGG | 0.144238 | 3_4:+21024358 | None:intergenic |
| GACTCTCAAGAAGCAGATTT+TGG | 0.193647 | 3_4:-21024517 | Msa0493890:CDS |
| TATAAAACCATGAGTTTAAA+AGG | 0.205596 | 3_4:-21026357 | Msa0493890:exon |
| TTAAAAGGTTATCACGTAAA+AGG | 0.233759 | 3_4:-21026342 | Msa0493890:intron |
| CATTTACTAGGTTTGTATTT+TGG | 0.237692 | 3_4:+21024662 | None:intergenic |
| GTACCTGAACTTGTTCTTGT+AGG | 0.262088 | 3_4:+21023799 | None:intergenic |
| TACTTGAAGAATCCATTTCT+TGG | 0.275479 | 3_4:+21026145 | None:intergenic |
| CACTATCAACAACAAAATTC+TGG | 0.292913 | 3_4:-21026105 | Msa0493890:CDS |
| GATTCTAATCAATCTAAAAT+TGG | 0.295488 | 3_4:-21025718 | Msa0493890:CDS |
| GATTCTTTAATCAAGCTAAA+AGG | 0.310922 | 3_4:+21023442 | None:intergenic |
| ATGCCACAAATAGCTGAAAA+TGG | 0.316152 | 3_4:-21024712 | Msa0493890:CDS |
| TTTGAGCGTTGTTGTCGATT+AGG | 0.323950 | 3_4:+21026037 | None:intergenic |
| CACGGCAGATATGTTGGATT+TGG | 0.326350 | 3_4:-21023841 | Msa0493890:CDS |
| CAGAATGGTAATTACTCTTA+TGG | 0.326591 | 3_4:-21025832 | Msa0493890:CDS |
| AAGTTGAATTTCATCGTAAT+AGG | 0.344808 | 3_4:+21026466 | None:intergenic |
| ACAAACCTAGTAAATGAAAA+TGG | 0.347655 | 3_4:-21024655 | Msa0493890:CDS |
| GGAATTGCTCCAATCTTATT+AGG | 0.352113 | 3_4:-21025690 | Msa0493890:CDS |
| TATTTGCCTAGTATGAGTTT+AGG | 0.365769 | 3_4:-21023504 | Msa0493890:three_prime_UTR |
| GAAGCTAGGTATGTGACTTT+TGG | 0.365896 | 3_4:+21024627 | None:intergenic |
| AATTACACAATTGCAAACTA+TGG | 0.369495 | 3_4:+21023544 | None:intergenic |
| GCAGATACTCACAGATTGTA+AGG | 0.393985 | 3_4:-21023689 | Msa0493890:intron |
| TGTAAAATTCGAGCGAAAAG+AGG | 0.401428 | 3_4:-21024394 | Msa0493890:CDS |
| TCCATTTCTGAACTTGTTGA+TGG | 0.404102 | 3_4:+21025970 | None:intergenic |
| AAATCAAGAAAGATTCTCTA+AGG | 0.409539 | 3_4:-21026591 | None:intergenic |
| TCCATCAACAAGTTCAGAAA+TGG | 0.409930 | 3_4:-21025971 | Msa0493890:CDS |
| AAGCCTGTGAAGCAAGAAAT+AGG | 0.413405 | 3_4:-21025871 | Msa0493890:CDS |
| AGAATTGTTCCATCCATTGT+TGG | 0.420159 | 3_4:+21025921 | None:intergenic |
| AGAATTGTCCCAAAATTCAT+TGG | 0.420165 | 3_4:+21024603 | None:intergenic |
| TCACCTATTTCTTGCTTCAC+AGG | 0.427017 | 3_4:+21025868 | None:intergenic |
| CAGAACCATTTGAAAAGCCT+TGG | 0.434899 | 3_4:+21025791 | None:intergenic |
| TTCTACTAAGATGACATCTA+TGG | 0.437415 | 3_4:-21024449 | Msa0493890:CDS |
| ATCAATCTAAAATTGGTGTT+AGG | 0.437757 | 3_4:-21025711 | Msa0493890:CDS |
| TAACATGTTGAATTACCCTT+TGG | 0.438453 | 3_4:-21026544 | Msa0493890:five_prime_UTR |
| GCTAAGAAGAAACCAAGAAA+TGG | 0.440153 | 3_4:-21026157 | Msa0493890:CDS |
| ATTAAAGAATCATTATGTAA+TGG | 0.455025 | 3_4:-21023430 | Msa0493890:three_prime_UTR |
| ACGATGAAATTCAACTTATG+TGG | 0.464850 | 3_4:-21026460 | Msa0493890:five_prime_UTR |
| AAAGCCAATGGCATCTCAAA+TGG | 0.469024 | 3_4:-21024778 | Msa0493890:CDS |
| GTACACTTAACTTCTCATCT+AGG | 0.475567 | 3_4:-21024756 | Msa0493890:CDS |
| CGAAGAATCTCTTACAAATG+AGG | 0.481362 | 3_4:-21026001 | Msa0493890:CDS |
| CATTATTTCATCTTCACTCT+CGG | 0.483548 | 3_4:+21024561 | None:intergenic |
| TCCAAGAAGCATAGCAGAGA+GGG | 0.488800 | 3_4:-21024359 | Msa0493890:intron |
| AACAAGCACGGCAGATATGT+TGG | 0.496382 | 3_4:-21023847 | Msa0493890:CDS |
| GGCCATCTACTAGCTTGAAA+AGG | 0.500559 | 3_4:-21024735 | Msa0493890:CDS |
| AGACCTACAAGAACAAGTTC+AGG | 0.503261 | 3_4:-21023802 | Msa0493890:intron |
| TGTACCATTTGAGATGCCAT+TGG | 0.531059 | 3_4:+21024774 | None:intergenic |
| AGGTTTGTAAACACTGAGGT+TGG | 0.535080 | 3_4:+21026057 | None:intergenic |
| TGATATCATCCAACAATGGA+TGG | 0.538943 | 3_4:-21025930 | Msa0493890:CDS |
| GTAAAATTCGAGCGAAAAGA+GGG | 0.539222 | 3_4:-21024393 | Msa0493890:CDS |
| GATAGTTGTATAAGCAAGAT+GGG | 0.543306 | 3_4:-21026195 | Msa0493890:CDS |
| GATGAACCTAAACTCATACT+AGG | 0.545179 | 3_4:+21023498 | None:intergenic |
| ATTAGACTCAAACTTCCAAA+GGG | 0.546009 | 3_4:+21026529 | None:intergenic |
| AGATAGTTGTATAAGCAAGA+TGG | 0.547485 | 3_4:-21026196 | Msa0493890:CDS |
| AATTAGACTCAAACTTCCAA+AGG | 0.550109 | 3_4:+21026528 | None:intergenic |
| CAAAATTCATTGGTGAAGCT+AGG | 0.555453 | 3_4:+21024613 | None:intergenic |
| GAATATGTTCCTCAACAGAA+TGG | 0.566494 | 3_4:-21025847 | Msa0493890:CDS |
| AAAGGATTAAATCAGCTACA+AGG | 0.569777 | 3_4:+21023625 | None:intergenic |
| GTAGAAAGCTTTAAAGCCAA+TGG | 0.573198 | 3_4:-21024790 | Msa0493890:CDS |
| TGATATCAACTTGGATAACA+TGG | 0.587600 | 3_4:+21025945 | None:intergenic |
| GAAGAATCTCTTACAAATGA+GGG | 0.589972 | 3_4:-21026000 | Msa0493890:CDS |
| ATTGTTGGATGATATCAACT+TGG | 0.590635 | 3_4:+21025936 | None:intergenic |
| GGATCTGAGTTGATTTACCA+AGG | 0.594347 | 3_4:-21025808 | Msa0493890:CDS |
| AATGGTAATTACTCTTATGG+TGG | 0.600108 | 3_4:-21025829 | Msa0493890:CDS |
| GACAGAATCAAGAAACTGCA+AGG | 0.604322 | 3_4:-21024215 | Msa0493890:CDS |
| GAGTAATTACCATTCTGTTG+AGG | 0.606610 | 3_4:+21025838 | None:intergenic |
| AATTTGGCAGCAAACAAGCA+CGG | 0.620596 | 3_4:-21023859 | Msa0493890:intron |
| TTAAAATCTTTACAACGACA+TGG | 0.624593 | 3_4:+21026422 | None:intergenic |
| TGCAACATTGACATTGAGAG+AGG | 0.628805 | 3_4:-21024812 | Msa0493890:CDS |
| GTCATCTTAGTAGAAGAACT+AGG | 0.642089 | 3_4:+21024457 | None:intergenic |
| ATCCAAGAAGCATAGCAGAG+AGG | 0.668254 | 3_4:-21024360 | Msa0493890:CDS |
| AAGTTGATATCATCCAACAA+TGG | 0.670047 | 3_4:-21025934 | Msa0493890:CDS |
| TAGGAAAGTTTGCAGCACAA+CGG | 0.673561 | 3_4:+21026485 | None:intergenic |
| GATTAGGTTTGTAAACACTG+AGG | 0.723367 | 3_4:+21026053 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAATTTTAGTTTTAAATTG+CGG | - | chr3_4:21023459-21023478 | Msa0493890:three_prime_UTR | 15.0% |
| !! | ATTAAAGAATCATTATGTAA+TGG | - | chr3_4:21026540-21026559 | Msa0493890:five_prime_UTR | 15.0% |
| !! | TATAAAACCATGAGTTTAAA+AGG | - | chr3_4:21023613-21023632 | Msa0493890:three_prime_UTR | 20.0% |
| !! | TAAAAAATTGCAACAAAAAC+CGG | + | chr3_4:21023676-21023695 | None:intergenic | 20.0% |
| !!! | GATTCTAATCAATCTAAAAT+TGG | - | chr3_4:21024252-21024271 | Msa0493890:intron | 20.0% |
| !!! | CTTTTTCCTCTTAATAATTA+GGG | - | chr3_4:21024394-21024413 | Msa0493890:CDS | 20.0% |
| !!! | TGAATACTTTTATGAATTGA+AGG | - | chr3_4:21025132-21025151 | Msa0493890:intron | 20.0% |
| !!! | ATAATGTTTTCTACTTCAAA+TGG | - | chr3_4:21025426-21025445 | Msa0493890:intron | 20.0% |
| !! | TATGTTAATCTGAAAATTTC+AGG | - | chr3_4:21025712-21025731 | Msa0493890:CDS | 20.0% |
| !!! | AAAATACCTTATCTGATTTT+GGG | + | chr3_4:21025787-21025806 | None:intergenic | 20.0% |
| !!! | TAAAATACCTTATCTGATTT+TGG | + | chr3_4:21025788-21025807 | None:intergenic | 20.0% |
| !!! | TTTAAAGTTATTACTGATGT+CGG | + | chr3_4:21025966-21025985 | None:intergenic | 20.0% |
| !!! | TTAGACATTATAGATTTTGA+TGG | + | chr3_4:21026241-21026260 | None:intergenic | 20.0% |
| !!! | TAATCCTTTTAGATAGAAAA+TGG | - | chr3_4:21026359-21026378 | Msa0493890:exon | 20.0% |
| !!! | AATCCTTTTAGATAGAAAAT+GGG | - | chr3_4:21026360-21026379 | Msa0493890:exon | 20.0% |
| ! | AAGTTGAATTTCATCGTAAT+AGG | + | chr3_4:21023507-21023526 | None:intergenic | 25.0% |
| ! | TTAAAATCTTTACAACGACA+TGG | + | chr3_4:21023551-21023570 | None:intergenic | 25.0% |
| !!! | AAACTCATGGTTTTATATTG+CGG | + | chr3_4:21023610-21023629 | None:intergenic | 25.0% |
| ! | TTAAAAGGTTATCACGTAAA+AGG | - | chr3_4:21023628-21023647 | Msa0493890:exon | 25.0% |
| !! | AATGGTTTTTATGGATCTTT+TGG | - | chr3_4:21024204-21024223 | Msa0493890:CDS | 25.0% |
| !! | ATCAATCTAAAATTGGTGTT+AGG | - | chr3_4:21024259-21024278 | Msa0493890:intron | 25.0% |
| !! | GAGTTTTTCTCTAATGAAAA+TGG | - | chr3_4:21024321-21024340 | Msa0493890:intron | 25.0% |
| !!! | GCTTTTTCCTCTTAATAATT+AGG | - | chr3_4:21024393-21024412 | Msa0493890:CDS | 25.0% |
| ! | AGCTTATAAAAACAGCTTAT+AGG | - | chr3_4:21024549-21024568 | Msa0493890:CDS | 25.0% |
| !!! | ATTGCTCATTTGTTTTTTCT+TGG | + | chr3_4:21024743-21024762 | None:intergenic | 25.0% |
| ! | AGAAAAAACAAATGAGCAAT+TGG | - | chr3_4:21024743-21024762 | Msa0493890:CDS | 25.0% |
| ! | AACTTGATTCATCATTAGTA+AGG | - | chr3_4:21024795-21024814 | Msa0493890:CDS | 25.0% |
| !! | CGCTTATATTTTTCATTTAC+AGG | + | chr3_4:21024835-21024854 | None:intergenic | 25.0% |
| ! | ATGAAAAATATAAGCGCTAA+AGG | - | chr3_4:21024839-21024858 | Msa0493890:intron | 25.0% |
| !!! | TAATATATGAAGTACTGTCA+TGG | - | chr3_4:21024924-21024943 | Msa0493890:intron | 25.0% |
| ! | TCAAAATAAGTCAAACAGTT+TGG | + | chr3_4:21025107-21025126 | None:intergenic | 25.0% |
| !!! | TTTGTATTTTGGTCACAATT+TGG | + | chr3_4:21025300-21025319 | None:intergenic | 25.0% |
| !! | CATTTACTAGGTTTGTATTT+TGG | + | chr3_4:21025311-21025330 | None:intergenic | 25.0% |
| ! | ACAAACCTAGTAAATGAAAA+TGG | - | chr3_4:21025315-21025334 | Msa0493890:intron | 25.0% |
| !! | GAGAATTTTCTTCAAATTCA+AGG | - | chr3_4:21025543-21025562 | Msa0493890:intron | 25.0% |
| ! | ACATAGGCTTAATAATAGTA+TGG | + | chr3_4:21025675-21025694 | None:intergenic | 25.0% |
| ! | TGCGTAGTTTATATACATTT+CGG | - | chr3_4:21026073-21026092 | Msa0493890:CDS | 25.0% |
| ! | GTAACTTAGTACTTCTAATT+TGG | - | chr3_4:21026095-21026114 | Msa0493890:CDS | 25.0% |
| ! | TCATTCAATGTGTTTATGTA+AGG | + | chr3_4:21026211-21026230 | None:intergenic | 25.0% |
| ! | AATTACACAATTGCAAACTA+TGG | + | chr3_4:21026429-21026448 | None:intergenic | 25.0% |
| ! | GATTCTTTAATCAAGCTAAA+AGG | + | chr3_4:21026531-21026550 | None:intergenic | 25.0% |
| TAACATGTTGAATTACCCTT+TGG | - | chr3_4:21023426-21023445 | Msa0493890:three_prime_UTR | 30.0% | |
| ATTAGACTCAAACTTCCAAA+GGG | + | chr3_4:21023444-21023463 | None:intergenic | 30.0% | |
| AATTAGACTCAAACTTCCAA+AGG | + | chr3_4:21023445-21023464 | None:intergenic | 30.0% | |
| ACGATGAAATTCAACTTATG+TGG | - | chr3_4:21023510-21023529 | Msa0493890:three_prime_UTR | 30.0% | |
| ! | GTGATAACCTTTTAAACTCA+TGG | + | chr3_4:21023623-21023642 | None:intergenic | 30.0% |
| AGATAGTTGTATAAGCAAGA+TGG | - | chr3_4:21023774-21023793 | Msa0493890:intron | 30.0% | |
| GATAGTTGTATAAGCAAGAT+GGG | - | chr3_4:21023775-21023794 | Msa0493890:intron | 30.0% | |
| TACTTGAAGAATCCATTTCT+TGG | + | chr3_4:21023828-21023847 | None:intergenic | 30.0% | |
| CACTATCAACAACAAAATTC+TGG | - | chr3_4:21023865-21023884 | Msa0493890:intron | 30.0% | |
| GAAGAATCTCTTACAAATGA+GGG | - | chr3_4:21023970-21023989 | Msa0493890:intron | 30.0% | |
| TGATATCAACTTGGATAACA+TGG | + | chr3_4:21024028-21024047 | None:intergenic | 30.0% | |
| ATTGTTGGATGATATCAACT+TGG | + | chr3_4:21024037-21024056 | None:intergenic | 30.0% | |
| !! | AAGTTGATATCATCCAACAA+TGG | - | chr3_4:21024036-21024055 | Msa0493890:intron | 30.0% |
| CAGAATGGTAATTACTCTTA+TGG | - | chr3_4:21024138-21024157 | Msa0493890:intron | 30.0% | |
| AATGGTAATTACTCTTATGG+TGG | - | chr3_4:21024141-21024160 | Msa0493890:intron | 30.0% | |
| ! | ATTTACCAAGGCTTTTCAAA+TGG | - | chr3_4:21024174-21024193 | Msa0493890:intron | 30.0% |
| !!! | TTTTCAAATGGTTCTGGTAA+TGG | - | chr3_4:21024186-21024205 | Msa0493890:intron | 30.0% |
| ! | ACTCTTTTGCCTAATAAGAT+TGG | + | chr3_4:21024292-21024311 | None:intergenic | 30.0% |
| AACAGACCCTAATTATTAAG+AGG | + | chr3_4:21024403-21024422 | None:intergenic | 30.0% | |
| CTTAATAATTAGGGTCTGTT+TGG | - | chr3_4:21024403-21024422 | Msa0493890:CDS | 30.0% | |
| AGCTTATTGAGCTTATCTAT+TGG | - | chr3_4:21024429-21024448 | Msa0493890:CDS | 30.0% | |
| !!! | GCTGTTTTTATAAGCTATCT+AGG | + | chr3_4:21024545-21024564 | None:intergenic | 30.0% |
| CGGATATTGAGTTATTACAT+AGG | + | chr3_4:21024645-21024664 | None:intergenic | 30.0% | |
| TAATAACTCAATATCCGAAC+AGG | - | chr3_4:21024648-21024667 | Msa0493890:CDS | 30.0% | |
| AATAACTCAATATCCGAACA+GGG | - | chr3_4:21024649-21024668 | Msa0493890:CDS | 30.0% | |
| TTCATCATTAGTAAGGTTTC+AGG | - | chr3_4:21024802-21024821 | Msa0493890:CDS | 30.0% | |
| ! | ATTCCATTTTCAGCTATTTG+TGG | + | chr3_4:21025264-21025283 | None:intergenic | 30.0% |
| ! | AGCTACCATTTTCATTTACT+AGG | + | chr3_4:21025323-21025342 | None:intergenic | 30.0% |
| ! | TAGCTTCACCAATGAATTTT+GGG | - | chr3_4:21025359-21025378 | Msa0493890:intron | 30.0% |
| AGAATTGTCCCAAAATTCAT+TGG | + | chr3_4:21025370-21025389 | None:intergenic | 30.0% | |
| CATTATTTCATCTTCACTCT+CGG | + | chr3_4:21025412-21025431 | None:intergenic | 30.0% | |
| ! | GTTTTCTACTTCAAATGGTT+TGG | - | chr3_4:21025431-21025450 | Msa0493890:intron | 30.0% |
| !!! | GATTTTGGCTATCAAAATCT+TGG | - | chr3_4:21025468-21025487 | Msa0493890:intron | 30.0% |
| TTCTACTAAGATGACATCTA+TGG | - | chr3_4:21025521-21025540 | Msa0493890:intron | 30.0% | |
| ATGAAACTGTTGAATCACAT+AGG | + | chr3_4:21025691-21025710 | None:intergenic | 30.0% | |
| ! | TCTTTTCCCAAAATCAGATA+AGG | - | chr3_4:21025778-21025797 | Msa0493890:CDS | 30.0% |
| !! | CTTTTGAGAAAGTTAAAGTC+TGG | + | chr3_4:21025876-21025895 | None:intergenic | 30.0% |
| ! | ATGTCTTCAATCTAAAGTGT+CGG | - | chr3_4:21026047-21026066 | Msa0493890:CDS | 30.0% |
| AAAGGATTAAATCAGCTACA+AGG | + | chr3_4:21026348-21026367 | None:intergenic | 30.0% | |
| TATTTGCCTAGTATGAGTTT+AGG | - | chr3_4:21026466-21026485 | Msa0493890:five_prime_UTR | 30.0% | |
| ! | TTTTATATTGCGGTCTGCAA+CGG | + | chr3_4:21023600-21023619 | None:intergenic | 35.0% |
| GCTAAGAAGAAACCAAGAAA+TGG | - | chr3_4:21023813-21023832 | Msa0493890:CDS | 35.0% | |
| GATTAGGTTTGTAAACACTG+AGG | + | chr3_4:21023920-21023939 | None:intergenic | 35.0% | |
| CGAAGAATCTCTTACAAATG+AGG | - | chr3_4:21023969-21023988 | Msa0493890:intron | 35.0% | |
| TCCATCAACAAGTTCAGAAA+TGG | - | chr3_4:21023999-21024018 | Msa0493890:intron | 35.0% | |
| !! | TCCATTTCTGAACTTGTTGA+TGG | + | chr3_4:21024003-21024022 | None:intergenic | 35.0% |
| TGATATCATCCAACAATGGA+TGG | - | chr3_4:21024040-21024059 | Msa0493890:intron | 35.0% | |
| AGAATTGTTCCATCCATTGT+TGG | + | chr3_4:21024052-21024071 | None:intergenic | 35.0% | |
| GAATATGTTCCTCAACAGAA+TGG | - | chr3_4:21024123-21024142 | Msa0493890:intron | 35.0% | |
| GAGTAATTACCATTCTGTTG+AGG | + | chr3_4:21024135-21024154 | None:intergenic | 35.0% | |
| !!! | GGTTCTGGTAATGGTTTTTA+TGG | - | chr3_4:21024195-21024214 | Msa0493890:CDS | 35.0% |
| ! | GGTTTTTATGGATCTTTTGG+TGG | - | chr3_4:21024207-21024226 | Msa0493890:CDS | 35.0% |
| !!! | TTTTGGTGGAGTTGATACTA+TGG | - | chr3_4:21024221-21024240 | Msa0493890:CDS | 35.0% |
| GGAATTGCTCCAATCTTATT+AGG | - | chr3_4:21024280-21024299 | Msa0493890:intron | 35.0% | |
| TCATTAGAGAAAAACTCAGC+AGG | + | chr3_4:21024318-21024337 | None:intergenic | 35.0% | |
| TGAAAACATTAAGCCCTGTT+CGG | + | chr3_4:21024665-21024684 | None:intergenic | 35.0% | |
| !! | AGTTTTGTCCGTTGTATGAA+CGG | - | chr3_4:21024862-21024881 | Msa0493890:intron | 35.0% |
| !! | TATGAAGTACTGTCATGGAT+AGG | - | chr3_4:21024929-21024948 | Msa0493890:intron | 35.0% |
| !! | GTAGAAAGCTTTAAAGCCAA+TGG | - | chr3_4:21025180-21025199 | Msa0493890:intron | 35.0% |
| GTACACTTAACTTCTCATCT+AGG | - | chr3_4:21025214-21025233 | Msa0493890:intron | 35.0% | |
| !! | ATCCTTTTCAAGCTAGTAGA+TGG | + | chr3_4:21025240-21025259 | None:intergenic | 35.0% |
| ATGCCACAAATAGCTGAAAA+TGG | - | chr3_4:21025258-21025277 | Msa0493890:intron | 35.0% | |
| CAAAATTCATTGGTGAAGCT+AGG | + | chr3_4:21025360-21025379 | None:intergenic | 35.0% | |
| ! | CTAGCTTCACCAATGAATTT+TGG | - | chr3_4:21025358-21025377 | Msa0493890:intron | 35.0% |
| GTCATCTTAGTAGAAGAACT+AGG | + | chr3_4:21025516-21025535 | None:intergenic | 35.0% | |
| ! | CTTTTCGCTCGAATTTTACA+AGG | + | chr3_4:21025576-21025595 | None:intergenic | 35.0% |
| TGTAAAATTCGAGCGAAAAG+AGG | - | chr3_4:21025576-21025595 | Msa0493890:intron | 35.0% | |
| GTAAAATTCGAGCGAAAAGA+GGG | - | chr3_4:21025577-21025596 | Msa0493890:intron | 35.0% | |
| CTTGATTCTGTCACTAATTC+TGG | + | chr3_4:21025747-21025766 | None:intergenic | 35.0% | |
| AGTAACGTAGACACAGATAT+TGG | - | chr3_4:21025926-21025945 | Msa0493890:CDS | 35.0% | |
| CTTTAGATTGAAGACATGAC+CGG | + | chr3_4:21026044-21026063 | None:intergenic | 35.0% | |
| AATCTGTGAGTATCTGCAAA+AGG | + | chr3_4:21026278-21026297 | None:intergenic | 35.0% | |
| ! | GCTCCCATTTTCTATCTAAA+AGG | + | chr3_4:21026366-21026385 | None:intergenic | 35.0% |
| GATGAACCTAAACTCATACT+AGG | + | chr3_4:21026475-21026494 | None:intergenic | 35.0% | |
| TAGGAAAGTTTGCAGCACAA+CGG | + | chr3_4:21023488-21023507 | None:intergenic | 40.0% | |
| AGGTTTGTAAACACTGAGGT+TGG | + | chr3_4:21023916-21023935 | None:intergenic | 40.0% | |
| ! | TTTGAGCGTTGTTGTCGATT+AGG | + | chr3_4:21023936-21023955 | None:intergenic | 40.0% |
| AAGCCTGTGAAGCAAGAAAT+AGG | - | chr3_4:21024099-21024118 | Msa0493890:intron | 40.0% | |
| ! | TCACCTATTTCTTGCTTCAC+AGG | + | chr3_4:21024105-21024124 | None:intergenic | 40.0% |
| !! | GGATCTGAGTTGATTTACCA+AGG | - | chr3_4:21024162-21024181 | Msa0493890:intron | 40.0% |
| CAGAACCATTTGAAAAGCCT+TGG | + | chr3_4:21024182-21024201 | None:intergenic | 40.0% | |
| ! | CAAGGCTTTTCAAATGGTTC+TGG | - | chr3_4:21024180-21024199 | Msa0493890:intron | 40.0% |
| TATTGGCACACACACTTGTT+AGG | - | chr3_4:21024446-21024465 | Msa0493890:CDS | 40.0% | |
| AAGCTATCTAGGAGAGCTTA+AGG | + | chr3_4:21024534-21024553 | None:intergenic | 40.0% | |
| GCAATTGGACCAATGTTTGT+TGG | - | chr3_4:21024758-21024777 | Msa0493890:CDS | 40.0% | |
| TGCAACATTGACATTGAGAG+AGG | - | chr3_4:21025158-21025177 | Msa0493890:intron | 40.0% | |
| AAAGCCAATGGCATCTCAAA+TGG | - | chr3_4:21025192-21025211 | Msa0493890:intron | 40.0% | |
| ! | TGTACCATTTGAGATGCCAT+TGG | + | chr3_4:21025199-21025218 | None:intergenic | 40.0% |
| ! | GAAGCTAGGTATGTGACTTT+TGG | + | chr3_4:21025346-21025365 | None:intergenic | 40.0% |
| ! | GACTCTCAAGAAGCAGATTT+TGG | - | chr3_4:21025453-21025472 | Msa0493890:intron | 40.0% |
| GACAGAATCAAGAAACTGCA+AGG | - | chr3_4:21025755-21025774 | Msa0493890:CDS | 40.0% | |
| AATTTGGCAGCAAACAAGCA+CGG | - | chr3_4:21026111-21026130 | Msa0493890:CDS | 40.0% | |
| AGACCTACAAGAACAAGTTC+AGG | - | chr3_4:21026168-21026187 | Msa0493890:CDS | 40.0% | |
| ! | GTACCTGAACTTGTTCTTGT+AGG | + | chr3_4:21026174-21026193 | None:intergenic | 40.0% |
| GCAGATACTCACAGATTGTA+AGG | - | chr3_4:21026281-21026300 | Msa0493890:intron | 40.0% | |
| ! | GACCAATGTTTGTTGGTCCA+AGG | - | chr3_4:21024765-21024784 | Msa0493890:CDS | 45.0% |
| CTCCTTGGACCAACAAACAT+TGG | + | chr3_4:21024770-21024789 | None:intergenic | 45.0% | |
| GAATCAAGTTCCTAGCTCCT+TGG | + | chr3_4:21024785-21024804 | None:intergenic | 45.0% | |
| GACCATAGCCGTTCATACAA+CGG | + | chr3_4:21024873-21024892 | None:intergenic | 45.0% | |
| ! | GGCCATCTACTAGCTTGAAA+AGG | - | chr3_4:21025235-21025254 | Msa0493890:intron | 45.0% |
| ! | ATCCAAGAAGCATAGCAGAG+AGG | - | chr3_4:21025610-21025629 | Msa0493890:intron | 45.0% |
| ! | TCCAAGAAGCATAGCAGAGA+GGG | - | chr3_4:21025611-21025630 | Msa0493890:intron | 45.0% |
| AGACACCACTTGTCATACAC+CGG | - | chr3_4:21026022-21026041 | Msa0493890:CDS | 45.0% | |
| AACAAGCACGGCAGATATGT+TGG | - | chr3_4:21026123-21026142 | Msa0493890:CDS | 45.0% | |
| CACGGCAGATATGTTGGATT+TGG | - | chr3_4:21026129-21026148 | Msa0493890:CDS | 45.0% | |
| TAAACTGCAGTCGCAGCATC+CGG | - | chr3_4:21023654-21023673 | Msa0493890:CDS | 50.0% | |
| ! | GTTTGTTGGTCCAAGGAGCT+AGG | - | chr3_4:21024772-21024791 | Msa0493890:CDS | 50.0% |
| GTCCGTTGTATGAACGGCTA+TGG | - | chr3_4:21024868-21024887 | Msa0493890:intron | 50.0% | |
| ACCCTCTCTGCTATGCTTCT+TGG | + | chr3_4:21025615-21025634 | None:intergenic | 50.0% | |
| CATGACCGGTGTATGACAAG+TGG | + | chr3_4:21026030-21026049 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 21023386 | 21026606 | 21023386 | ID=Msa0493890;Name=Msa0493890 |
| chr3_4 | mRNA | 21023386 | 21026606 | 21023386 | ID=Msa0493890-mRNA-1;Parent=Msa0493890;Name=Msa0493890-mRNA-1;_AED=0.13;_eAED=0.13;_QI=236|1|1|1|0.8|0.66|6|250|426 |
| chr3_4 | exon | 21023386 | 21023707 | 21023386 | ID=Msa0493890-mRNA-1:exon:5346;Parent=Msa0493890-mRNA-1 |
| chr3_4 | exon | 21023803 | 21023871 | 21023803 | ID=Msa0493890-mRNA-1:exon:5345;Parent=Msa0493890-mRNA-1 |
| chr3_4 | exon | 21024193 | 21024258 | 21024193 | ID=Msa0493890-mRNA-1:exon:5344;Parent=Msa0493890-mRNA-1 |
| chr3_4 | exon | 21024360 | 21024838 | 21024360 | ID=Msa0493890-mRNA-1:exon:5343;Parent=Msa0493890-mRNA-1 |
| chr3_4 | exon | 21025650 | 21026216 | 21025650 | ID=Msa0493890-mRNA-1:exon:5342;Parent=Msa0493890-mRNA-1 |
| chr3_4 | exon | 21026343 | 21026606 | 21026343 | ID=Msa0493890-mRNA-1:exon:5341;Parent=Msa0493890-mRNA-1 |
| chr3_4 | five_prime_UTR | 21026371 | 21026606 | 21026371 | ID=Msa0493890-mRNA-1:five_prime_utr;Parent=Msa0493890-mRNA-1 |
| chr3_4 | CDS | 21026343 | 21026370 | 21026343 | ID=Msa0493890-mRNA-1:cds;Parent=Msa0493890-mRNA-1 |
| chr3_4 | CDS | 21025650 | 21026216 | 21025650 | ID=Msa0493890-mRNA-1:cds;Parent=Msa0493890-mRNA-1 |
| chr3_4 | CDS | 21024360 | 21024838 | 21024360 | ID=Msa0493890-mRNA-1:cds;Parent=Msa0493890-mRNA-1 |
| chr3_4 | CDS | 21024193 | 21024258 | 21024193 | ID=Msa0493890-mRNA-1:cds;Parent=Msa0493890-mRNA-1 |
| chr3_4 | CDS | 21023803 | 21023871 | 21023803 | ID=Msa0493890-mRNA-1:cds;Parent=Msa0493890-mRNA-1 |
| chr3_4 | CDS | 21023636 | 21023707 | 21023636 | ID=Msa0493890-mRNA-1:cds;Parent=Msa0493890-mRNA-1 |
| chr3_4 | three_prime_UTR | 21023386 | 21023635 | 21023386 | ID=Msa0493890-mRNA-1:three_prime_utr;Parent=Msa0493890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
