AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401170 MtrunA17_Chr2g0322881 56.283 382 125 7 58 401 282 659 5.99e-135 401
Msa0401170 MtrunA17_Chr7g0231401 54.308 383 133 7 52 396 219 597 8.22e-128 381
Msa0401170 MtrunA17_Chr7g0216041 60.082 243 74 4 181 401 1 242 1.84e-93 281
Msa0401170 MtrunA17_Chr2g0310491 59.671 243 75 4 181 401 1 242 2.52e-92 278
Msa0401170 MtrunA17_Chr1g0189031 75.200 125 30 1 279 402 7 131 1.36e-57 184
Msa0401170 MtrunA17_Chr7g0216011 53.409 88 41 0 181 268 1 88 1.85e-29 109
Msa0401170 MtrunA17_Chr2g0290591 62.500 88 26 1 304 384 7 94 3.75e-27 105
Msa0401170 MtrunA17_Chr4g0013531 57.534 73 31 0 181 253 1 73 2.90e-23 92.4
Msa0401170 MtrunA17_Chr4g0007941 50.909 110 40 3 58 161 292 393 1.52e-22 98.6
Msa0401170 MtrunA17_Chr2g0283971 57.812 64 27 0 181 244 1 64 1.65e-20 84.7
Msa0401170 MtrunA17_Chr3g0086081 29.412 221 131 6 132 335 9 221 6.19e-17 81.6
Msa0401170 MtrunA17_Chr8g0345501 28.968 252 163 8 148 392 457 699 2.15e-16 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 177 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACGTTTGGGGAAAATTT+TGG 0.105360 3_2:-26213634 None:intergenic
AATTTGTGGGATAATTATTT+TGG 0.108502 3_2:-26213492 None:intergenic
ATAAGATTAATCACTCTTTA+AGG 0.131851 3_2:-26214915 None:intergenic
CGATTCAGTTATATTATATT+TGG 0.143290 3_2:-26213740 None:intergenic
GAAACTGACCGATGATATTT+TGG 0.152087 3_2:-26213839 None:intergenic
CTGTTCATTTCATTTGTTAT+TGG 0.173696 3_2:+26215022 Msa0401170:five_prime_UTR
ATAGGTTACCGTGATGATTT+TGG 0.193367 3_2:-26214020 None:intergenic
ACCCTCTTGATGAGCGTATT+TGG 0.197636 3_2:+26216462 Msa0401170:CDS
GGCTTATATTTCCCTGCTTC+CGG 0.239965 3_2:-26217980 None:intergenic
AGTTGAAATGCGTAAGAAAT+TGG 0.243678 3_2:+26216987 Msa0401170:CDS
TCATTAGAGGTAAGAGAGTT+AGG 0.248371 3_2:+26216195 Msa0401170:CDS
CTCCTTCATTTGTCTTGTGC+AGG 0.254921 3_2:+26214765 Msa0401170:five_prime_UTR
CAACATGTTGGAGTCACTTC+TGG 0.269185 3_2:-26217231 None:intergenic
GTCTTGACAACGAAGATTAA+AGG 0.273557 3_2:+26215533 Msa0401170:five_prime_UTR
TTTAAACAGAAATATTATTA+AGG 0.283635 3_2:-26214791 None:intergenic
AGTATAACTGAGAGGCTTTA+TGG 0.291616 3_2:-26216912 None:intergenic
TATCTAATTGTAACATATCT+AGG 0.294183 3_2:+26215053 Msa0401170:five_prime_UTR
AGGAGCAAATTTCTTTCTTA+AGG 0.294207 3_2:+26215571 Msa0401170:five_prime_UTR
GCTTATATTTCCCTGCTTCC+GGG 0.299727 3_2:-26217979 None:intergenic
GAAGATGAGTGTTTAGTGTT+TGG 0.328979 3_2:-26213555 None:intergenic
ACATGTATCATCAAATGATA+TGG 0.333602 3_2:+26216412 Msa0401170:CDS
ATTATGAAGCAAAAGTTTGA+TGG 0.336833 3_2:+26216630 Msa0401170:CDS
TCAGCCTGTGCGCATTGGCT+AGG 0.344078 3_2:+26215128 Msa0401170:five_prime_UTR
TATACTCAAGTGCAATGTAT+AGG 0.344953 3_2:+26216929 Msa0401170:CDS
AATAAGAAGGGTCGTATATA+TGG 0.345229 3_2:+26217950 Msa0401170:CDS
CATGTTCAGGGCCTGTGTTA+TGG 0.345829 3_2:+26215256 Msa0401170:five_prime_UTR
TATATAATATGTATAATATA+TGG 0.349346 3_2:+26218216 Msa0401170:three_prime_UTR
GGCACCTTGTATCACAGTTT+TGG 0.353099 3_2:+26214741 Msa0401170:five_prime_UTR
GGCTTTGTGTGCTGCTACTT+CGG 0.353452 3_2:+26214601 Msa0401170:five_prime_UTR
AAGATGAGTGTTTAGTGTTT+GGG 0.357814 3_2:-26213554 None:intergenic
AGGAGAGTGAATGAACGTTT+GGG 0.371611 3_2:-26213645 None:intergenic
AATGACTAAATTGATGGAAA+TGG 0.377424 3_2:+26218147 Msa0401170:CDS
TTGTAAGATGCCGTCAGATC+TGG 0.379519 3_2:-26218014 None:intergenic
ATTATCTTCTTAGATGTTGT+TGG 0.383594 3_2:+26217920 Msa0401170:CDS
GAAGGGTCGTATATATGGTT+TGG 0.383853 3_2:+26217955 Msa0401170:CDS
AATTTCTTACGCATTTCAAC+TGG 0.385775 3_2:-26216985 None:intergenic
TTAATCTCTCCATCAAGTTC+AGG 0.387578 3_2:-26216877 None:intergenic
CTTGGTGATTGAGAAATAGA+TGG 0.389007 3_2:-26216347 None:intergenic
GAATGGAAAGAGCTTGCAAT+TGG 0.390512 3_2:-26213782 None:intergenic
TGTGTGCTGCTACTTCGGTT+GGG 0.392553 3_2:+26214606 Msa0401170:five_prime_UTR
GAGGAGAGTGAATGAACGTT+TGG 0.394838 3_2:-26213646 None:intergenic
CAGCAGTTGACAGTAGTTGT+AGG 0.396302 3_2:+26215198 Msa0401170:five_prime_UTR
CATTAGAGGTAAGAGAGTTA+GGG 0.397424 3_2:+26216196 Msa0401170:CDS
CACCAAGTATTTCTTTGAAA+AGG 0.400886 3_2:-26215507 None:intergenic
AAGGGGAAGATGATGGTGAT+TGG 0.406043 3_2:+26216959 Msa0401170:CDS
TGATACAAGGTGCCGTATAT+AGG 0.406083 3_2:-26214732 None:intergenic
ATACTCAAGTGCAATGTATA+GGG 0.406268 3_2:+26216930 Msa0401170:CDS
GGGTCCTCACTCCCAATGTT+TGG 0.418133 3_2:-26216443 None:intergenic
TTGTGTGCTGCTACTTCGGT+TGG 0.418865 3_2:+26214605 Msa0401170:five_prime_UTR
TATGGTTTGGGCCCGGAAGC+AGG 0.419706 3_2:+26217968 Msa0401170:CDS
CAAGTAGATGGAGGTGGAGG+TGG 0.420006 3_2:-26218184 None:intergenic
AGCGGAAGACATACGGAAAA+GGG 0.425605 3_2:-26215406 None:intergenic
GTTGTGGTGCCGCCTATATA+CGG 0.426396 3_2:+26214720 Msa0401170:five_prime_UTR
GCGTACGTGCTCTCTGGTCC+TGG 0.433115 3_2:-26216491 None:intergenic
AAGGGTCGTATATATGGTTT+GGG 0.436558 3_2:+26217956 Msa0401170:CDS
AAGTGGCTACCTGAACTTGA+TGG 0.439090 3_2:+26216868 Msa0401170:CDS
TCCTTCATTTGTCTTGTGCA+GGG 0.439225 3_2:+26214766 Msa0401170:five_prime_UTR
ATATCTATATATCAAGTAGA+TGG 0.441232 3_2:-26218196 None:intergenic
GGAGCAAATGACTAAATTGA+TGG 0.442098 3_2:+26218141 Msa0401170:CDS
TTGAAAGAAGGATTATTGAG+AGG 0.443451 3_2:+26217843 Msa0401170:CDS
GCACCAGATGCATTAGTTGA+TGG 0.444225 3_2:-26216383 None:intergenic
ATTTGTTGTTGTATGAGATA+TGG 0.446902 3_2:-26216297 None:intergenic
CTCTTAGAAATCTCAAATGT+TGG 0.450779 3_2:-26217108 None:intergenic
AATCTGAATTTGAACAAATG+AGG 0.455659 3_2:+26218035 Msa0401170:CDS
AGCCAATGCGCACAGGCTGA+AGG 0.455791 3_2:-26215125 None:intergenic
ACTCCATCACACTCTATTGT+TGG 0.456185 3_2:+26216257 Msa0401170:CDS
GCACGTGTAGGTGCAATAGC+AGG 0.457043 3_2:-26216597 None:intergenic
AAGCGGAAGACATACGGAAA+AGG 0.458354 3_2:-26215407 None:intergenic
TACTGTAGAGGAAGTTTAAG+TGG 0.461890 3_2:+26216851 Msa0401170:intron
TCATCATAAAACATGTCATA+AGG 0.468156 3_2:-26218365 None:intergenic
CTCCATCACACTCTATTGTT+GGG 0.470994 3_2:+26216258 Msa0401170:CDS
AGGGGTACCACACTTTCATC+TGG 0.474193 3_2:+26216215 Msa0401170:CDS
TGCAGGATGAGTTTGAAAGA+AGG 0.474303 3_2:+26217831 Msa0401170:intron
AGAAGTGACTCCAACATGTT+GGG 0.474581 3_2:+26217233 Msa0401170:CDS
ATCCCATCAACTAATGCATC+TGG 0.475451 3_2:+26216380 Msa0401170:CDS
TGCCTTCAGCCTGTGCGCAT+TGG 0.475915 3_2:+26215123 Msa0401170:five_prime_UTR
CAATGTATAGGGTCAGAAAA+GGG 0.479574 3_2:+26216941 Msa0401170:CDS
TGAAAGAAGGATTATTGAGA+GGG 0.482690 3_2:+26217844 Msa0401170:CDS
ACTCCGACGGGTGGAGGAAG+AGG 0.482783 3_2:+26216158 Msa0401170:CDS
GGAGGAAGAGGTACTGGTAG+AGG 0.483998 3_2:+26216170 Msa0401170:CDS
GTGTGCTGCTACTTCGGTTG+GGG 0.484481 3_2:+26214607 Msa0401170:five_prime_UTR
TATATGTATATATAGATGGC+AGG 0.484722 3_2:+26216128 Msa0401170:intron
TGGATTCATCTCCAAACATT+GGG 0.487998 3_2:+26216432 Msa0401170:CDS
ACTGGTAGAGGTATCATTAG+AGG 0.490396 3_2:+26216182 Msa0401170:CDS
ATAATAGCGTACGTGCTCTC+TGG 0.492114 3_2:-26216497 None:intergenic
TGAAAGGTGATCCGAGCAAG+TGG 0.494071 3_2:+26217280 Msa0401170:CDS
ATCACTTAAAGAGAAATTGA+AGG 0.495892 3_2:+26218069 Msa0401170:CDS
ATCTTCTTAGATGTTGTTGG+AGG 0.501796 3_2:+26217923 Msa0401170:CDS
AAGTATTTCTTTGAAAAGGT+TGG 0.504864 3_2:-26215503 None:intergenic
AGCAAAAGTTTGATGGATGT+TGG 0.505731 3_2:+26216637 Msa0401170:CDS
GCAATGTATAGGGTCAGAAA+AGG 0.506132 3_2:+26216940 Msa0401170:CDS
AATGATACTCCGACGGGTGG+AGG 0.506285 3_2:+26216152 Msa0401170:CDS
TTTGAGGAAACCCACTTGCT+CGG 0.509454 3_2:-26217291 None:intergenic
CACCAGATGCATTAGTTGAT+GGG 0.510631 3_2:-26216382 None:intergenic
GATTCACATGAGGAGGCACT+AGG 0.510736 3_2:+26217866 Msa0401170:CDS
ATGGATTCATCTCCAAACAT+TGG 0.511496 3_2:+26216431 Msa0401170:CDS
AATGGAAAGAGCTTGCAATT+GGG 0.512535 3_2:-26213781 None:intergenic
GATGGGATTTGTGGCGAGCT+TGG 0.515891 3_2:-26216365 None:intergenic
GCATTAGTTGATGGGATTTG+TGG 0.516544 3_2:-26216374 None:intergenic
ATCTGAATTTGAACAAATGA+GGG 0.517221 3_2:+26218036 Msa0401170:CDS
ACGGGTGGAGGAAGAGGTAC+TGG 0.518282 3_2:+26216164 Msa0401170:CDS
AGATGGGCTAGGAGTAGAGT+GGG 0.519486 3_2:-26216330 None:intergenic
GGAGTTGATTCGTGCATCGC+AGG 0.519790 3_2:+26218099 Msa0401170:CDS
GTGATGAAGGCTATTGGAGG+TGG 0.523894 3_2:+26215466 Msa0401170:five_prime_UTR
AGAAATATTTCCCAACATGT+TGG 0.526800 3_2:-26217243 None:intergenic
GCATCAAAGCGGAAGACATA+CGG 0.529315 3_2:-26215413 None:intergenic
TTGCGATTCAGAACTGAGAA+TGG 0.530977 3_2:-26213799 None:intergenic
GTTTGTGAGTATAAAATTTG+TGG 0.531553 3_2:-26213506 None:intergenic
CAGGCCTAGCCAATGCGCAC+AGG 0.536795 3_2:-26215132 None:intergenic
TTTGTGAGTATAAAATTTGT+GGG 0.537112 3_2:-26213505 None:intergenic
GAGCGTATTTGGATTCGTCC+AGG 0.537513 3_2:+26216473 Msa0401170:CDS
CAGAAGTGACTCCAACATGT+TGG 0.541840 3_2:+26217232 Msa0401170:CDS
TCCCTGCACAAGACAAATGA+AGG 0.541955 3_2:-26214767 None:intergenic
TATCAAGTAGATGGAGGTGG+AGG 0.544900 3_2:-26218187 None:intergenic
CTATACACACACAACTTGAA+AGG 0.546046 3_2:+26217264 Msa0401170:CDS
GATTGAGAAATAGATGGGCT+AGG 0.548078 3_2:-26216341 None:intergenic
GGAAAATTTGTTCATCTGAG+AGG 0.552564 3_2:-26213665 None:intergenic
TGTTGGAGGAGTAAATAAGA+AGG 0.559641 3_2:+26217937 Msa0401170:CDS
GTCAGAAAAGGGGAAGATGA+TGG 0.559900 3_2:+26216952 Msa0401170:CDS
ATTCACATGAGGAGGCACTA+GGG 0.560459 3_2:+26217867 Msa0401170:CDS
ATGGTTTGGGCCCGGAAGCA+GGG 0.562443 3_2:+26217969 Msa0401170:CDS
GATGCTCCACTCCACACTGG+AGG 0.563771 3_2:+26217078 Msa0401170:CDS
ATCTCCAAACATTGGGAGTG+AGG 0.565131 3_2:+26216439 Msa0401170:CDS
TTCTCAGTCCAAAATATCAT+CGG 0.566573 3_2:+26213831 Msa0401170:five_prime_UTR
TCTTCCGCTTTGATGCTATG+AGG 0.567322 3_2:+26215420 Msa0401170:five_prime_UTR
ATATATCAAGTAGATGGAGG+TGG 0.569831 3_2:-26218190 None:intergenic
ATCTAATTGTAACATATCTA+GGG 0.570317 3_2:+26215054 Msa0401170:five_prime_UTR
CCTGAACATGAAAACACTGC+AGG 0.571241 3_2:-26215243 None:intergenic
GATGGATGTTGGACAACGTA+TGG 0.573364 3_2:+26216648 Msa0401170:CDS
TTGATGGAAATGGTTTCTCA+AGG 0.574333 3_2:+26218157 Msa0401170:CDS
ATCCAAATACGCTCATCAAG+AGG 0.574518 3_2:-26216464 None:intergenic
TCGTATATATGGTTTGGGCC+CGG 0.576311 3_2:+26217961 Msa0401170:CDS
AGAGAAATTGAAGGCTCATG+AGG 0.576351 3_2:+26218078 Msa0401170:CDS
TGAGGATGAATGGAAAAGAA+AGG 0.577845 3_2:+26217023 Msa0401170:CDS
TCTGATGCTCCACTCCACAC+TGG 0.578550 3_2:+26217075 Msa0401170:CDS
GTGGGTTTCCTCAAAATCAA+AGG 0.578941 3_2:+26217299 Msa0401170:CDS
TCCAAATACGCTCATCAAGA+GGG 0.580216 3_2:-26216463 None:intergenic
TAGATGGGCTAGGAGTAGAG+TGG 0.581035 3_2:-26216331 None:intergenic
GTTGGAGGAGTAAATAAGAA+GGG 0.583257 3_2:+26217938 Msa0401170:CDS
ATGATCTTTCTCAGCTTGAG+AGG 0.584823 3_2:+26215290 Msa0401170:five_prime_UTR
TATTGAGAGGGATTCACATG+AGG 0.589603 3_2:+26217856 Msa0401170:CDS
ATCGACCCTCCAGTGTGGAG+TGG 0.591163 3_2:-26217084 None:intergenic
ATGCTCCACTCCACACTGGA+GGG 0.594568 3_2:+26217079 Msa0401170:CDS
ACCACACTTTCATCTGGAAG+AGG 0.594965 3_2:+26216221 Msa0401170:CDS
TTCACATGAGGAGGCACTAG+GGG 0.594984 3_2:+26217868 Msa0401170:CDS
GACAACGTATGGAGAACTAA+AGG 0.595830 3_2:+26216659 Msa0401170:CDS
TGAGAGGGATTCACATGAGG+AGG 0.596847 3_2:+26217859 Msa0401170:CDS
AGCAAAATACCAATAACAGA+AGG 0.600580 3_2:-26215164 None:intergenic
TTGGTGATTGAGAAATAGAT+GGG 0.605686 3_2:-26216346 None:intergenic
TCTAGATCTTCCAGATCTGA+CGG 0.608615 3_2:+26218004 Msa0401170:CDS
GGCAGGAAATGATACTCCGA+CGG 0.610254 3_2:+26216145 Msa0401170:CDS
AATAGAGTGTGATGGAGTAG+TGG 0.611591 3_2:-26216252 None:intergenic
CACGTGTAGGTGCAATAGCA+GGG 0.613266 3_2:-26216596 None:intergenic
TTTGTGATGAAGGCTATTGG+AGG 0.614018 3_2:+26215463 Msa0401170:five_prime_UTR
ATTAGAGGTAAGAGAGTTAG+GGG 0.619018 3_2:+26216197 Msa0401170:CDS
GGAAATGATACTCCGACGGG+TGG 0.625390 3_2:+26216149 Msa0401170:CDS
GAGACCAAAACTGTGATACA+AGG 0.626852 3_2:-26214745 None:intergenic
GTTGTTGTATGAGATATGGA+AGG 0.629336 3_2:-26216293 None:intergenic
GCAGGAAATGATACTCCGAC+GGG 0.631572 3_2:+26216146 Msa0401170:CDS
ACCTCTTCCAGATGAAAGTG+TGG 0.635712 3_2:-26216222 None:intergenic
GCGGAAGACATACGGAAAAG+GGG 0.637939 3_2:-26215405 None:intergenic
CTGAACATGAAAACACTGCA+GGG 0.639339 3_2:-26215242 None:intergenic
AACACTTAACAGAAATTGCG+AGG 0.642314 3_2:-26214647 None:intergenic
TGCCCAACAATAGAGTGTGA+TGG 0.647892 3_2:-26216260 None:intergenic
GTACCTCTTCCTCCACCCGT+CGG 0.649584 3_2:-26216161 None:intergenic
TCTATATATCAAGTAGATGG+AGG 0.650087 3_2:-26218193 None:intergenic
AATGTATAGGGTCAGAAAAG+GGG 0.655667 3_2:+26216942 Msa0401170:CDS
GAAAGGTGATCCGAGCAAGT+GGG 0.657241 3_2:+26217281 Msa0401170:CDS
GGAGAGTGAATGAACGTTTG+GGG 0.657262 3_2:-26213644 None:intergenic
TGCACTTGAGTATAACTGAG+AGG 0.663361 3_2:-26216920 None:intergenic
TCAGATCTGGAAGATCTAGA+CGG 0.664477 3_2:-26218001 None:intergenic
TCTGACTCCCAAAATCATCA+CGG 0.668208 3_2:+26214012 Msa0401170:five_prime_UTR
TACAAGGTGCCGTATATAGG+CGG 0.671706 3_2:-26214729 None:intergenic
GATGGGCTAGGAGTAGAGTG+GGG 0.679329 3_2:-26216329 None:intergenic
TTGGAATCGACCCTCCAGTG+TGG 0.688790 3_2:-26217089 None:intergenic
GCGAAACTGAACCATAACAC+AGG 0.694871 3_2:-26215267 None:intergenic
AGTACCTCATAGCATCAAAG+CGG 0.722697 3_2:-26215424 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAACAGAAATATTATTA+AGG - chr3_2:26214794-26214813 None:intergenic 10.0%
!!! TTTTTATATGTATATATAGA+TGG + chr3_2:26216124-26216143 Msa0401170:intron 10.0%
!!! TATGATATATTTAAAGTTAA+AGG - chr3_2:26216533-26216552 None:intergenic 10.0%
!!! TTAATTTTATTTTAGGGTTT+GGG - chr3_2:26213613-26213632 None:intergenic 15.0%
!!! TTTGGGTTAATTTTATTTTA+GGG - chr3_2:26213619-26213638 None:intergenic 15.0%
!!! TTTTGGGTTAATTTTATTTT+AGG - chr3_2:26213620-26213639 None:intergenic 15.0%
!!! TTTGTTTTTATTGTTTTACA+TGG + chr3_2:26214415-26214434 Msa0401170:intron 15.0%
!! ATAACAAAGTTCTTAAAAAA+TGG + chr3_2:26214832-26214851 Msa0401170:five_prime_UTR 15.0%
!!! TGCTTAAAATTTTAATATGT+AGG + chr3_2:26215751-26215770 Msa0401170:intron 15.0%
!!! TTGTTTTATGATAATAGTAA+AGG - chr3_2:26215882-26215901 None:intergenic 15.0%
!!! TTCTTCAATATTGTTTTAAT+AGG + chr3_2:26216568-26216587 Msa0401170:intron 15.0%
!!! AAAGTATTCATGATTATTTA+CGG + chr3_2:26216747-26216766 Msa0401170:intron 15.0%
!!! TGAGTTTAATTGTATTTTTT+AGG + chr3_2:26217150-26217169 Msa0401170:intron 15.0%
!!! TAATTGTATTTTTTAGGTTA+AGG + chr3_2:26217156-26217175 Msa0401170:intron 15.0%
!! AATATTCATAAAGTTCAATA+AGG - chr3_2:26217352-26217371 None:intergenic 15.0%
!!! TTAGTAAAATATTATTTTGC+AGG + chr3_2:26217814-26217833 Msa0401170:intron 15.0%
!!! ATTTGTGGGATAATTATTTT+GGG - chr3_2:26213494-26213513 None:intergenic 20.0%
!!! AATTTGTGGGATAATTATTT+TGG - chr3_2:26213495-26213514 None:intergenic 20.0%
!! TTTGTGAGTATAAAATTTGT+GGG - chr3_2:26213508-26213527 None:intergenic 20.0%
!!! GTTAATTTTATTTTAGGGTT+TGG - chr3_2:26213614-26213633 None:intergenic 20.0%
!! CGATTCAGTTATATTATATT+TGG - chr3_2:26213743-26213762 None:intergenic 20.0%
!!! TGAAAACATTTAGAGTTATA+TGG + chr3_2:26214286-26214305 Msa0401170:intron 20.0%
!! ATATAAATTCAGAACATTTG+AGG + chr3_2:26214331-26214350 Msa0401170:intron 20.0%
!! TAAAAAATGGACAATAGAAA+AGG + chr3_2:26214845-26214864 Msa0401170:five_prime_UTR 20.0%
!! ATAAGATTAATCACTCTTTA+AGG - chr3_2:26214918-26214937 None:intergenic 20.0%
!! TATCTAATTGTAACATATCT+AGG + chr3_2:26215053-26215072 Msa0401170:five_prime_UTR 20.0%
!! ATCTAATTGTAACATATCTA+GGG + chr3_2:26215054-26215073 Msa0401170:five_prime_UTR 20.0%
!!! TACTTTTTCTCTTGTTTTAA+AGG + chr3_2:26215667-26215686 Msa0401170:intron 20.0%
!! CTCTACAGTATAAAAAATAT+AGG - chr3_2:26216841-26216860 None:intergenic 20.0%
!!! CTATATTTTTTATACTGTAG+AGG + chr3_2:26216839-26216858 Msa0401170:intron 20.0%
!!! GATGTTTTCTAAAAACAAAA+CGG - chr3_2:26217210-26217229 None:intergenic 20.0%
!!! GACAATTCATTTCTAAAATA+TGG - chr3_2:26217611-26217630 None:intergenic 20.0%
!! ATATCTATATATCAAGTAGA+TGG - chr3_2:26218199-26218218 None:intergenic 20.0%
!!! AAACGCTTAAACATTTTTAA+TGG - chr3_2:26218291-26218310 None:intergenic 20.0%
!!! TTTTATGATGATGAATGTAT+GGG + chr3_2:26218377-26218396 Msa0401170:three_prime_UTR 20.0%
!!! AATATTTTAGTATGAGAGGA+GGG - chr3_2:26213446-26213465 None:intergenic 25.0%
!!! AAATATTCTCCCTCTTTTTT+TGG + chr3_2:26213459-26213478 Msa0401170:five_prime_UTR 25.0%
!!! TTTGTGGGATAATTATTTTG+GGG - chr3_2:26213493-26213512 None:intergenic 25.0%
! GTTTGTGAGTATAAAATTTG+TGG - chr3_2:26213509-26213528 None:intergenic 25.0%
!!! AAATTCTAAGATTGAGAGAT+AGG - chr3_2:26214041-26214060 None:intergenic 25.0%
!!! ATTCACTGTTATTTTCATCA+TGG + chr3_2:26214172-26214191 Msa0401170:intron 25.0%
! AACAAGCTTTACTTCAAATA+TGG - chr3_2:26214198-26214217 None:intergenic 25.0%
! AAACAGAACCTGAATAAAAA+AGG - chr3_2:26214690-26214709 None:intergenic 25.0%
!!! CTGTTCATTTCATTTGTTAT+TGG + chr3_2:26215022-26215041 Msa0401170:five_prime_UTR 25.0%
!!! GTTTTAGAAAGCTATCAAAA+TGG + chr3_2:26215372-26215391 Msa0401170:five_prime_UTR 25.0%
!! ATGCATTAATTTTGTGATGA+AGG + chr3_2:26215453-26215472 Msa0401170:five_prime_UTR 25.0%
!! AAGTATTTCTTTGAAAAGGT+TGG - chr3_2:26215506-26215525 None:intergenic 25.0%
!! AACCTTTTCAAAGAAATACT+TGG + chr3_2:26215505-26215524 Msa0401170:five_prime_UTR 25.0%
!! GATTAAAGGAATTTTCTTGT+TGG + chr3_2:26215547-26215566 Msa0401170:five_prime_UTR 25.0%
! ACTACCTTATGTTTACAATT+TGG + chr3_2:26215717-26215736 Msa0401170:intron 25.0%
! TGAACCAAATTGTAAACATA+AGG - chr3_2:26215724-26215743 None:intergenic 25.0%
!!! ATCAAGTAAATGTTGATTTC+TGG + chr3_2:26215977-26215996 Msa0401170:intron 25.0%
! TTGATTAACACATCAAAATC+TGG - chr3_2:26216095-26216114 None:intergenic 25.0%
! TATATGTATATATAGATGGC+AGG + chr3_2:26216128-26216147 Msa0401170:intron 25.0%
!!! ATTTGTTGTTGTATGAGATA+TGG - chr3_2:26216300-26216319 None:intergenic 25.0%
! ACATGTATCATCAAATGATA+TGG + chr3_2:26216412-26216431 Msa0401170:CDS 25.0%
! ATTATGAAGCAAAAGTTTGA+TGG + chr3_2:26216630-26216649 Msa0401170:CDS 25.0%
! AGGCTGAAGAAAAAAAAAAA+AGG + chr3_2:26216679-26216698 Msa0401170:intron 25.0%
! GGCTGAAGAAAAAAAAAAAA+GGG + chr3_2:26216680-26216699 Msa0401170:intron 25.0%
! GTAAGAAATTGGATGAAAAA+TGG + chr3_2:26216998-26217017 Msa0401170:CDS 25.0%
! AAGTAGTTGAAGATATGATA+TGG + chr3_2:26217385-26217404 Msa0401170:intron 25.0%
!!! ATACACTGATGCTATTTTTA+TGG + chr3_2:26217515-26217534 Msa0401170:intron 25.0%
! AAATAATGAATTGTCTTGAC+AGG + chr3_2:26217730-26217749 Msa0401170:intron 25.0%
! ATTATCTTCTTAGATGTTGT+TGG + chr3_2:26217920-26217939 Msa0401170:CDS 25.0%
! AATCTGAATTTGAACAAATG+AGG + chr3_2:26218035-26218054 Msa0401170:CDS 25.0%
! ATCTGAATTTGAACAAATGA+GGG + chr3_2:26218036-26218055 Msa0401170:CDS 25.0%
! ATCACTTAAAGAGAAATTGA+AGG + chr3_2:26218069-26218088 Msa0401170:CDS 25.0%
! AATGACTAAATTGATGGAAA+TGG + chr3_2:26218147-26218166 Msa0401170:CDS 25.0%
!!! ATATGGTTATTTTGATAGCT+TGG + chr3_2:26218233-26218252 Msa0401170:three_prime_UTR 25.0%
! TCATCATAAAACATGTCATA+AGG - chr3_2:26218368-26218387 None:intergenic 25.0%
!!! GTTTTATGATGATGAATGTA+TGG + chr3_2:26218376-26218395 Msa0401170:three_prime_UTR 25.0%
!!! GAATATTTTAGTATGAGAGG+AGG - chr3_2:26213447-26213466 None:intergenic 30.0%
!!! GGAGAATATTTTAGTATGAG+AGG - chr3_2:26213450-26213469 None:intergenic 30.0%
AAGATGAGTGTTTAGTGTTT+GGG - chr3_2:26213557-26213576 None:intergenic 30.0%
! TGGGTTCATCTTAAGTTTTT+GGG - chr3_2:26213594-26213613 None:intergenic 30.0%
! TTGGGTTCATCTTAAGTTTT+TGG - chr3_2:26213595-26213614 None:intergenic 30.0%
!!! TTCAGTTTTGAGAGTAGATT+GGG - chr3_2:26213689-26213708 None:intergenic 30.0%
!!! ATTCAGTTTTGAGAGTAGAT+TGG - chr3_2:26213690-26213709 None:intergenic 30.0%
TTCTCAGTCCAAAATATCAT+CGG + chr3_2:26213831-26213850 Msa0401170:five_prime_UTR 30.0%
CAGAAGAAATTGATGAGAAT+GGG - chr3_2:26213908-26213927 None:intergenic 30.0%
TCAGAAGAAATTGATGAGAA+TGG - chr3_2:26213909-26213928 None:intergenic 30.0%
!! AGTAAAGCTTGTTGAAATGA+AGG + chr3_2:26214205-26214224 Msa0401170:intron 30.0%
!! GTAAAGCTTGTTGAAATGAA+GGG + chr3_2:26214206-26214225 Msa0401170:intron 30.0%
GAACTCAAAATCCAAATGTA+AGG - chr3_2:26214239-26214258 None:intergenic 30.0%
GATATTCTTACAACCTTTCT+TGG + chr3_2:26214361-26214380 Msa0401170:intron 30.0%
! TGTTTTACATGGCTAACATT+TGG + chr3_2:26214426-26214445 Msa0401170:intron 30.0%
! TATTAGCATGACTGTCTTTT+AGG + chr3_2:26214520-26214539 Msa0401170:intron 30.0%
CTTCTATCAACACTACAAAA+CGG - chr3_2:26214555-26214574 None:intergenic 30.0%
! TTTTCTGTGATATTTTGTGC+AGG + chr3_2:26214889-26214908 Msa0401170:five_prime_UTR 30.0%
! TTTCTGTGATATTTTGTGCA+GGG + chr3_2:26214890-26214909 Msa0401170:five_prime_UTR 30.0%
!!! ACGTTGGTTTTTAATTACGA+GGG - chr3_2:26214991-26215010 None:intergenic 30.0%
TAATTAAAAACCAACGTCGA+TGG + chr3_2:26214994-26215013 Msa0401170:five_prime_UTR 30.0%
!! TAGTTTTCTAGGTGTTTTTG+TGG + chr3_2:26215082-26215101 Msa0401170:five_prime_UTR 30.0%
!! AGTTTTCTAGGTGTTTTTGT+GGG + chr3_2:26215083-26215102 Msa0401170:five_prime_UTR 30.0%
!!! TTTTTTTCGCCTTCTGTTAT+TGG + chr3_2:26215155-26215174 Msa0401170:five_prime_UTR 30.0%
AGCAAAATACCAATAACAGA+AGG - chr3_2:26215167-26215186 None:intergenic 30.0%
! AATTTTGTGATGAAGGCTAT+TGG + chr3_2:26215460-26215479 Msa0401170:five_prime_UTR 30.0%
! CACCAAGTATTTCTTTGAAA+AGG - chr3_2:26215510-26215529 None:intergenic 30.0%
AGGAGCAAATTTCTTTCTTA+AGG + chr3_2:26215571-26215590 Msa0401170:five_prime_UTR 30.0%
!! AAAGGTAAAGAGCATTAGTT+TGG + chr3_2:26215685-26215704 Msa0401170:intron 30.0%
! GGTAGTTTTCAATTAGATCT+TGG - chr3_2:26215854-26215873 None:intergenic 30.0%
GATCTAATTGAAAACTACCT+TGG + chr3_2:26215855-26215874 Msa0401170:intron 30.0%
ATGATAATAGTAAAGGACCA+AGG - chr3_2:26215875-26215894 None:intergenic 30.0%
ACAAAAGCTTCTTATCATGA+TGG - chr3_2:26216018-26216037 None:intergenic 30.0%
CATCTAAAAAACATACAACG+CGG - chr3_2:26216069-26216088 None:intergenic 30.0%
! TTGGTGATTGAGAAATAGAT+GGG - chr3_2:26216349-26216368 None:intergenic 30.0%
TATACTCAAGTGCAATGTAT+AGG + chr3_2:26216929-26216948 Msa0401170:CDS 30.0%
ATACTCAAGTGCAATGTATA+GGG + chr3_2:26216930-26216949 Msa0401170:CDS 30.0%
AATTTCTTACGCATTTCAAC+TGG - chr3_2:26216988-26217007 None:intergenic 30.0%
AGTTGAAATGCGTAAGAAAT+TGG + chr3_2:26216987-26217006 Msa0401170:CDS 30.0%
CTCTTAGAAATCTCAAATGT+TGG - chr3_2:26217111-26217130 None:intergenic 30.0%
AGAAATATTTCCCAACATGT+TGG - chr3_2:26217246-26217265 None:intergenic 30.0%
!! AGCAATATCCTTTGATTTTG+AGG - chr3_2:26217310-26217329 None:intergenic 30.0%
TAGTTGAAGATATGATATGG+AGG + chr3_2:26217388-26217407 Msa0401170:intron 30.0%
TAGAAATGAATTGTCTTGAC+AGG + chr3_2:26217616-26217635 Msa0401170:intron 30.0%
!! TTAGTTTGTTTGATGCTTCT+GGG + chr3_2:26217655-26217674 Msa0401170:intron 30.0%
! AGTATAAGAATGTTGCTTCT+GGG + chr3_2:26217705-26217724 Msa0401170:intron 30.0%
TTGAAAGAAGGATTATTGAG+AGG + chr3_2:26217843-26217862 Msa0401170:CDS 30.0%
TGAAAGAAGGATTATTGAGA+GGG + chr3_2:26217844-26217863 Msa0401170:CDS 30.0%
AATAAGAAGGGTCGTATATA+TGG + chr3_2:26217950-26217969 Msa0401170:CDS 30.0%
TCTATATATCAAGTAGATGG+AGG - chr3_2:26218196-26218215 None:intergenic 30.0%
GTTTGTGAGCCAAAAAAAGA+GGG - chr3_2:26213471-26213490 None:intergenic 35.0%
GAAGATGAGTGTTTAGTGTT+TGG - chr3_2:26213558-26213577 None:intergenic 35.0%
! GAACGTTTGGGGAAAATTTT+GGG - chr3_2:26213636-26213655 None:intergenic 35.0%
! TGAACGTTTGGGGAAAATTT+TGG - chr3_2:26213637-26213656 None:intergenic 35.0%
! GGAAAATTTGTTCATCTGAG+AGG - chr3_2:26213668-26213687 None:intergenic 35.0%
AATGGAAAGAGCTTGCAATT+GGG - chr3_2:26213784-26213803 None:intergenic 35.0%
!! GATGATATTTTGGACTGAGA+AGG - chr3_2:26213832-26213851 None:intergenic 35.0%
! GAAACTGACCGATGATATTT+TGG - chr3_2:26213842-26213861 None:intergenic 35.0%
AGCGATTTCTTCTCTTTGTT+AGG + chr3_2:26213862-26213881 Msa0401170:intron 35.0%
GCGATTTCTTCTCTTTGTTA+GGG + chr3_2:26213863-26213882 Msa0401170:intron 35.0%
! TAGGTTACCGTGATGATTTT+GGG - chr3_2:26214022-26214041 None:intergenic 35.0%
! ATAGGTTACCGTGATGATTT+TGG - chr3_2:26214023-26214042 None:intergenic 35.0%
! TCAGAACATTTGAGGTCAAT+AGG + chr3_2:26214339-26214358 Msa0401170:intron 35.0%
CATACAACATCATCCAAGAA+AGG - chr3_2:26214377-26214396 None:intergenic 35.0%
TCATGCTAATATGTGATGTG+AGG - chr3_2:26214511-26214530 None:intergenic 35.0%
AACACTTAACAGAAATTGCG+AGG - chr3_2:26214650-26214669 None:intergenic 35.0%
!!! TTGTGTGGCCTTTTTTATTC+AGG + chr3_2:26214679-26214698 Msa0401170:five_prime_UTR 35.0%
!! ATTCAGGTTCTGTTTTTCTG+TGG + chr3_2:26214695-26214714 Msa0401170:five_prime_UTR 35.0%
!! TTCAGGTTCTGTTTTTCTGT+GGG + chr3_2:26214696-26214715 Msa0401170:five_prime_UTR 35.0%
!!! GACGTTGGTTTTTAATTACG+AGG - chr3_2:26214992-26215011 None:intergenic 35.0%
!! GTTTTCTAGGTGTTTTTGTG+GGG + chr3_2:26215084-26215103 Msa0401170:five_prime_UTR 35.0%
!! TTTTCTAGGTGTTTTTGTGG+GGG + chr3_2:26215085-26215104 Msa0401170:five_prime_UTR 35.0%
TAACAGAAGGCGAAAAAAAC+AGG - chr3_2:26215154-26215173 None:intergenic 35.0%
GTCTTGACAACGAAGATTAA+AGG + chr3_2:26215533-26215552 Msa0401170:five_prime_UTR 35.0%
! AAAGGAATTTTCTTGTTGGC+AGG + chr3_2:26215551-26215570 Msa0401170:five_prime_UTR 35.0%
TCATTAGAGGTAAGAGAGTT+AGG + chr3_2:26216195-26216214 Msa0401170:CDS 35.0%
CATTAGAGGTAAGAGAGTTA+GGG + chr3_2:26216196-26216215 Msa0401170:CDS 35.0%
ATTAGAGGTAAGAGAGTTAG+GGG + chr3_2:26216197-26216216 Msa0401170:CDS 35.0%
GTTGTTGTATGAGATATGGA+AGG - chr3_2:26216296-26216315 None:intergenic 35.0%
! CTTGGTGATTGAGAAATAGA+TGG - chr3_2:26216350-26216369 None:intergenic 35.0%
ATGGATTCATCTCCAAACAT+TGG + chr3_2:26216431-26216450 Msa0401170:CDS 35.0%
TGGATTCATCTCCAAACATT+GGG + chr3_2:26216432-26216451 Msa0401170:CDS 35.0%
!! ATTTTTGTTATCGCACGTGT+AGG - chr3_2:26216612-26216631 None:intergenic 35.0%
! AGCAAAAGTTTGATGGATGT+TGG + chr3_2:26216637-26216656 Msa0401170:CDS 35.0%
TACTGTAGAGGAAGTTTAAG+TGG + chr3_2:26216851-26216870 Msa0401170:intron 35.0%
TTAATCTCTCCATCAAGTTC+AGG - chr3_2:26216880-26216899 None:intergenic 35.0%
AGTATAACTGAGAGGCTTTA+TGG - chr3_2:26216915-26216934 None:intergenic 35.0%
CAATGTATAGGGTCAGAAAA+GGG + chr3_2:26216941-26216960 Msa0401170:CDS 35.0%
AATGTATAGGGTCAGAAAAG+GGG + chr3_2:26216942-26216961 Msa0401170:CDS 35.0%
ATTGGATGAAAAATGGAGTG+AGG + chr3_2:26217005-26217024 Msa0401170:CDS 35.0%
AAAAATGGAGTGAGGATGAA+TGG + chr3_2:26217013-26217032 Msa0401170:CDS 35.0%
TGAGGATGAATGGAAAAGAA+AGG + chr3_2:26217023-26217042 Msa0401170:CDS 35.0%
CTATACACACACAACTTGAA+AGG + chr3_2:26217264-26217283 Msa0401170:CDS 35.0%
!!! CACTGATGCTATTTTTATGG+TGG + chr3_2:26217518-26217537 Msa0401170:intron 35.0%
!! GTTAGTTTGTTTGATGCTTC+TGG + chr3_2:26217654-26217673 Msa0401170:intron 35.0%
! CAGTATAAGAATGTTGCTTC+TGG + chr3_2:26217704-26217723 Msa0401170:intron 35.0%
ATCTTCTTAGATGTTGTTGG+AGG + chr3_2:26217923-26217942 Msa0401170:CDS 35.0%
TGTTGGAGGAGTAAATAAGA+AGG + chr3_2:26217937-26217956 Msa0401170:CDS 35.0%
GTTGGAGGAGTAAATAAGAA+GGG + chr3_2:26217938-26217957 Msa0401170:CDS 35.0%
AAGGGTCGTATATATGGTTT+GGG + chr3_2:26217956-26217975 Msa0401170:CDS 35.0%
! AGGAAGATTCACGTTTTCTT+AGG + chr3_2:26218119-26218138 Msa0401170:CDS 35.0%
! GGAAGATTCACGTTTTCTTA+GGG + chr3_2:26218120-26218139 Msa0401170:CDS 35.0%
GGAGCAAATGACTAAATTGA+TGG + chr3_2:26218141-26218160 Msa0401170:CDS 35.0%
TTGATGGAAATGGTTTCTCA+AGG + chr3_2:26218157-26218176 Msa0401170:CDS 35.0%
ATATATCAAGTAGATGGAGG+TGG - chr3_2:26218193-26218212 None:intergenic 35.0%
GGTTTGTGAGCCAAAAAAAG+AGG - chr3_2:26213472-26213491 None:intergenic 40.0%
AGGAGAGTGAATGAACGTTT+GGG - chr3_2:26213648-26213667 None:intergenic 40.0%
GAATGGAAAGAGCTTGCAAT+TGG - chr3_2:26213785-26213804 None:intergenic 40.0%
TTGCGATTCAGAACTGAGAA+TGG - chr3_2:26213802-26213821 None:intergenic 40.0%
TCTGACTCCCAAAATCATCA+CGG + chr3_2:26214012-26214031 Msa0401170:five_prime_UTR 40.0%
!! AGCTTGTTGAAATGAAGGGA+AGG + chr3_2:26214210-26214229 Msa0401170:intron 40.0%
! GCTTGTTGAAATGAAGGGAA+GGG + chr3_2:26214211-26214230 Msa0401170:intron 40.0%
CTTGTTGAAATGAAGGGAAG+GGG + chr3_2:26214212-26214231 Msa0401170:intron 40.0%
!!! GTCTTGTGCTTTGTTTTTGC+AGG + chr3_2:26214574-26214593 Msa0401170:intron 40.0%
!!! TGCTTTGTTTTTGCAGGTAC+TGG + chr3_2:26214580-26214599 Msa0401170:intron 40.0%
! AGTGTTTTCTGTCAGTTGTG+TGG + chr3_2:26214664-26214683 Msa0401170:five_prime_UTR 40.0%
!! TGATACAAGGTGCCGTATAT+AGG - chr3_2:26214735-26214754 None:intergenic 40.0%
GAGACCAAAACTGTGATACA+AGG - chr3_2:26214748-26214767 None:intergenic 40.0%
TCCTTCATTTGTCTTGTGCA+GGG + chr3_2:26214766-26214785 Msa0401170:five_prime_UTR 40.0%
!! GTTTTTAATTACGAGGGCAG+AGG - chr3_2:26214985-26215004 None:intergenic 40.0%
AACAGAAAAACCATCGACGT+TGG - chr3_2:26215007-26215026 None:intergenic 40.0%
!!! CTAGGGAGAGTTAGTTTTCT+AGG + chr3_2:26215071-26215090 Msa0401170:five_prime_UTR 40.0%
CTGAACATGAAAACACTGCA+GGG - chr3_2:26215245-26215264 None:intergenic 40.0%
! CTGCAGTGTTTTCATGTTCA+GGG + chr3_2:26215244-26215263 Msa0401170:five_prime_UTR 40.0%
ATGATCTTTCTCAGCTTGAG+AGG + chr3_2:26215290-26215309 Msa0401170:five_prime_UTR 40.0%
! TCTCAGCTTGAGAGGATTTT+TGG + chr3_2:26215298-26215317 Msa0401170:five_prime_UTR 40.0%
AGTACCTCATAGCATCAAAG+CGG - chr3_2:26215427-26215446 None:intergenic 40.0%
TTTGTGATGAAGGCTATTGG+AGG + chr3_2:26215463-26215482 Msa0401170:five_prime_UTR 40.0%
CCAAACATGAAAGGTGAAGA+AGG - chr3_2:26215822-26215841 None:intergenic 40.0%
CCTTCTTCACCTTTCATGTT+TGG + chr3_2:26215819-26215838 Msa0401170:intron 40.0%
CTAGTAGCACCAAACATGAA+AGG - chr3_2:26215831-26215850 None:intergenic 40.0%
!! ACTGGTAGAGGTATCATTAG+AGG + chr3_2:26216182-26216201 Msa0401170:CDS 40.0%
! AATAGAGTGTGATGGAGTAG+TGG - chr3_2:26216255-26216274 None:intergenic 40.0%
ACTCCATCACACTCTATTGT+TGG + chr3_2:26216257-26216276 Msa0401170:CDS 40.0%
CTCCATCACACTCTATTGTT+GGG + chr3_2:26216258-26216277 Msa0401170:CDS 40.0%
! GATTGAGAAATAGATGGGCT+AGG - chr3_2:26216344-26216363 None:intergenic 40.0%
!! GCATTAGTTGATGGGATTTG+TGG - chr3_2:26216377-26216396 None:intergenic 40.0%
ATCCCATCAACTAATGCATC+TGG + chr3_2:26216380-26216399 Msa0401170:CDS 40.0%
CACCAGATGCATTAGTTGAT+GGG - chr3_2:26216385-26216404 None:intergenic 40.0%
TCCAAATACGCTCATCAAGA+GGG - chr3_2:26216466-26216485 None:intergenic 40.0%
ATCCAAATACGCTCATCAAG+AGG - chr3_2:26216467-26216486 None:intergenic 40.0%
GACAACGTATGGAGAACTAA+AGG + chr3_2:26216659-26216678 Msa0401170:CDS 40.0%
ACCACATTGCAATCACACTA+CGG - chr3_2:26216708-26216727 None:intergenic 40.0%
TGCACTTGAGTATAACTGAG+AGG - chr3_2:26216923-26216942 None:intergenic 40.0%
GCAATGTATAGGGTCAGAAA+AGG + chr3_2:26216940-26216959 Msa0401170:CDS 40.0%
AGAAGTGACTCCAACATGTT+GGG + chr3_2:26217233-26217252 Msa0401170:CDS 40.0%
GTGGGTTTCCTCAAAATCAA+AGG + chr3_2:26217299-26217318 Msa0401170:CDS 40.0%
TGTTCACTGATGCTAGTTGT+TGG + chr3_2:26217483-26217502 Msa0401170:intron 40.0%
GTTCACTGATGCTAGTTGTT+GGG + chr3_2:26217484-26217503 Msa0401170:intron 40.0%
! TGCTTCTGGGAAACTGATAT+AGG + chr3_2:26217668-26217687 Msa0401170:intron 40.0%
TGCAGGATGAGTTTGAAAGA+AGG + chr3_2:26217831-26217850 Msa0401170:intron 40.0%
TATTGAGAGGGATTCACATG+AGG + chr3_2:26217856-26217875 Msa0401170:CDS 40.0%
GAAGGGTCGTATATATGGTT+TGG + chr3_2:26217955-26217974 Msa0401170:CDS 40.0%
TCAGATCTGGAAGATCTAGA+CGG - chr3_2:26218004-26218023 None:intergenic 40.0%
TCTAGATCTTCCAGATCTGA+CGG + chr3_2:26218004-26218023 Msa0401170:CDS 40.0%
AGAGAAATTGAAGGCTCATG+AGG + chr3_2:26218078-26218097 Msa0401170:CDS 40.0%
GGAGAGTGAATGAACGTTTG+GGG - chr3_2:26213647-26213666 None:intergenic 45.0%
GAGGAGAGTGAATGAACGTT+TGG - chr3_2:26213649-26213668 None:intergenic 45.0%
!! CTGTTTTTCTGTGGGTGTTG+TGG + chr3_2:26214704-26214723 Msa0401170:five_prime_UTR 45.0%
!! TACAAGGTGCCGTATATAGG+CGG - chr3_2:26214732-26214751 None:intergenic 45.0%
! GGCACCTTGTATCACAGTTT+TGG + chr3_2:26214741-26214760 Msa0401170:five_prime_UTR 45.0%
CTCCTTCATTTGTCTTGTGC+AGG + chr3_2:26214765-26214784 Msa0401170:five_prime_UTR 45.0%
TCCCTGCACAAGACAAATGA+AGG - chr3_2:26214770-26214789 None:intergenic 45.0%
!! AGGTGTTTTTGTGGGGGTAA+TGG + chr3_2:26215091-26215110 Msa0401170:five_prime_UTR 45.0%
!! TGTTTTTGTGGGGGTAATGG+TGG + chr3_2:26215094-26215113 Msa0401170:five_prime_UTR 45.0%
!! GTTTTTGTGGGGGTAATGGT+GGG + chr3_2:26215095-26215114 Msa0401170:five_prime_UTR 45.0%
!! TTTTTGTGGGGGTAATGGTG+GGG + chr3_2:26215096-26215115 Msa0401170:five_prime_UTR 45.0%
CAGCAGTTGACAGTAGTTGT+AGG + chr3_2:26215198-26215217 Msa0401170:five_prime_UTR 45.0%
CCTGAACATGAAAACACTGC+AGG - chr3_2:26215246-26215265 None:intergenic 45.0%
! CCTGCAGTGTTTTCATGTTC+AGG + chr3_2:26215243-26215262 Msa0401170:five_prime_UTR 45.0%
GCGAAACTGAACCATAACAC+AGG - chr3_2:26215270-26215289 None:intergenic 45.0%
AGCGGAAGACATACGGAAAA+GGG - chr3_2:26215409-26215428 None:intergenic 45.0%
AAGCGGAAGACATACGGAAA+AGG - chr3_2:26215410-26215429 None:intergenic 45.0%
GCATCAAAGCGGAAGACATA+CGG - chr3_2:26215416-26215435 None:intergenic 45.0%
TCTTCCGCTTTGATGCTATG+AGG + chr3_2:26215420-26215439 Msa0401170:five_prime_UTR 45.0%
ACCACACTTTCATCTGGAAG+AGG + chr3_2:26216221-26216240 Msa0401170:CDS 45.0%
ACCTCTTCCAGATGAAAGTG+TGG - chr3_2:26216225-26216244 None:intergenic 45.0%
TGCCCAACAATAGAGTGTGA+TGG - chr3_2:26216263-26216282 None:intergenic 45.0%
GCACCAGATGCATTAGTTGA+TGG - chr3_2:26216386-26216405 None:intergenic 45.0%
ATCTCCAAACATTGGGAGTG+AGG + chr3_2:26216439-26216458 Msa0401170:CDS 45.0%
ACCCTCTTGATGAGCGTATT+TGG + chr3_2:26216462-26216481 Msa0401170:CDS 45.0%
ATAATAGCGTACGTGCTCTC+TGG - chr3_2:26216500-26216519 None:intergenic 45.0%
GATGGATGTTGGACAACGTA+TGG + chr3_2:26216648-26216667 Msa0401170:CDS 45.0%
CACATTGCAATCACACTACG+GGG - chr3_2:26216706-26216725 None:intergenic 45.0%
CCACATTGCAATCACACTAC+GGG - chr3_2:26216707-26216726 None:intergenic 45.0%
AAGTGGCTACCTGAACTTGA+TGG + chr3_2:26216868-26216887 Msa0401170:CDS 45.0%
GTCAGAAAAGGGGAAGATGA+TGG + chr3_2:26216952-26216971 Msa0401170:CDS 45.0%
! AAGGGGAAGATGATGGTGAT+TGG + chr3_2:26216959-26216978 Msa0401170:CDS 45.0%
CAACATGTTGGAGTCACTTC+TGG - chr3_2:26217234-26217253 None:intergenic 45.0%
CAGAAGTGACTCCAACATGT+TGG + chr3_2:26217232-26217251 Msa0401170:CDS 45.0%
TTTGAGGAAACCCACTTGCT+CGG - chr3_2:26217294-26217313 None:intergenic 45.0%
!! ATTCACATGAGGAGGCACTA+GGG + chr3_2:26217867-26217886 Msa0401170:CDS 45.0%
! TCGTATATATGGTTTGGGCC+CGG + chr3_2:26217961-26217980 Msa0401170:CDS 45.0%
GCTTATATTTCCCTGCTTCC+GGG - chr3_2:26217982-26218001 None:intergenic 45.0%
GGCTTATATTTCCCTGCTTC+CGG - chr3_2:26217983-26218002 None:intergenic 45.0%
TTGTAAGATGCCGTCAGATC+TGG - chr3_2:26218017-26218036 None:intergenic 45.0%
TATCAAGTAGATGGAGGTGG+AGG - chr3_2:26218190-26218209 None:intergenic 45.0%
!! TATATAATATGTATAATATA+TGG + chr3_2:26218216-26218235 Msa0401170:three_prime_UTR 5.0%
AGGGAAGGGGACCTTACATT+TGG + chr3_2:26214225-26214244 Msa0401170:intron 50.0%
! GGCTTTGTGTGCTGCTACTT+CGG + chr3_2:26214601-26214620 Msa0401170:five_prime_UTR 50.0%
! TTGTGTGCTGCTACTTCGGT+TGG + chr3_2:26214605-26214624 Msa0401170:five_prime_UTR 50.0%
! TGTGTGCTGCTACTTCGGTT+GGG + chr3_2:26214606-26214625 Msa0401170:five_prime_UTR 50.0%
!! GTTGTGGTGCCGCCTATATA+CGG + chr3_2:26214720-26214739 Msa0401170:five_prime_UTR 50.0%
CATGTTCAGGGCCTGTGTTA+TGG + chr3_2:26215256-26215275 Msa0401170:five_prime_UTR 50.0%
GCGGAAGACATACGGAAAAG+GGG - chr3_2:26215408-26215427 None:intergenic 50.0%
GTGATGAAGGCTATTGGAGG+TGG + chr3_2:26215466-26215485 Msa0401170:five_prime_UTR 50.0%
GGCAGGAAATGATACTCCGA+CGG + chr3_2:26216145-26216164 Msa0401170:CDS 50.0%
GCAGGAAATGATACTCCGAC+GGG + chr3_2:26216146-26216165 Msa0401170:CDS 50.0%
!! AGGGGTACCACACTTTCATC+TGG + chr3_2:26216215-26216234 Msa0401170:CDS 50.0%
!! AGATGGGCTAGGAGTAGAGT+GGG - chr3_2:26216333-26216352 None:intergenic 50.0%
!! TAGATGGGCTAGGAGTAGAG+TGG - chr3_2:26216334-26216353 None:intergenic 50.0%
GAGCGTATTTGGATTCGTCC+AGG + chr3_2:26216473-26216492 Msa0401170:CDS 50.0%
CACGTGTAGGTGCAATAGCA+GGG - chr3_2:26216599-26216618 None:intergenic 50.0%
CCCGTAGTGTGATTGCAATG+TGG + chr3_2:26216704-26216723 Msa0401170:intron 50.0%
TGAAAGGTGATCCGAGCAAG+TGG + chr3_2:26217280-26217299 Msa0401170:CDS 50.0%
GAAAGGTGATCCGAGCAAGT+GGG + chr3_2:26217281-26217300 Msa0401170:CDS 50.0%
TGAGAGGGATTCACATGAGG+AGG + chr3_2:26217859-26217878 Msa0401170:CDS 50.0%
!! GATTCACATGAGGAGGCACT+AGG + chr3_2:26217866-26217885 Msa0401170:CDS 50.0%
!! TTCACATGAGGAGGCACTAG+GGG + chr3_2:26217868-26217887 Msa0401170:CDS 50.0%
! GTGTGCTGCTACTTCGGTTG+GGG + chr3_2:26214607-26214626 Msa0401170:five_prime_UTR 55.0%
GGAAATGATACTCCGACGGG+TGG + chr3_2:26216149-26216168 Msa0401170:CDS 55.0%
AATGATACTCCGACGGGTGG+AGG + chr3_2:26216152-26216171 Msa0401170:CDS 55.0%
!! GGAGGAAGAGGTACTGGTAG+AGG + chr3_2:26216170-26216189 Msa0401170:CDS 55.0%
!! GATGGGCTAGGAGTAGAGTG+GGG - chr3_2:26216332-26216351 None:intergenic 55.0%
GATGGGATTTGTGGCGAGCT+TGG - chr3_2:26216368-26216387 None:intergenic 55.0%
GGGTCCTCACTCCCAATGTT+TGG - chr3_2:26216446-26216465 None:intergenic 55.0%
GCACGTGTAGGTGCAATAGC+AGG - chr3_2:26216600-26216619 None:intergenic 55.0%
TCTGATGCTCCACTCCACAC+TGG + chr3_2:26217075-26217094 Msa0401170:CDS 55.0%
ATGCTCCACTCCACACTGGA+GGG + chr3_2:26217079-26217098 Msa0401170:CDS 55.0%
TTGGAATCGACCCTCCAGTG+TGG - chr3_2:26217092-26217111 None:intergenic 55.0%
!! GGAGTTGATTCGTGCATCGC+AGG + chr3_2:26218099-26218118 Msa0401170:CDS 55.0%
CAAGTAGATGGAGGTGGAGG+TGG - chr3_2:26218187-26218206 None:intergenic 55.0%
TGCCTTCAGCCTGTGCGCAT+TGG + chr3_2:26215123-26215142 Msa0401170:five_prime_UTR 60.0%
AGCCAATGCGCACAGGCTGA+AGG - chr3_2:26215128-26215147 None:intergenic 60.0%
!! TCAGCCTGTGCGCATTGGCT+AGG + chr3_2:26215128-26215147 Msa0401170:five_prime_UTR 60.0%
GTACCTCTTCCTCCACCCGT+CGG - chr3_2:26216164-26216183 None:intergenic 60.0%
! ACGGGTGGAGGAAGAGGTAC+TGG + chr3_2:26216164-26216183 Msa0401170:CDS 60.0%
GATGCTCCACTCCACACTGG+AGG + chr3_2:26217078-26217097 Msa0401170:CDS 60.0%
ATCGACCCTCCAGTGTGGAG+TGG - chr3_2:26217087-26217106 None:intergenic 60.0%
! TATGGTTTGGGCCCGGAAGC+AGG + chr3_2:26217968-26217987 Msa0401170:CDS 60.0%
! ATGGTTTGGGCCCGGAAGCA+GGG + chr3_2:26217969-26217988 Msa0401170:CDS 60.0%
CAGGCCTAGCCAATGCGCAC+AGG - chr3_2:26215135-26215154 None:intergenic 65.0%
ACTCCGACGGGTGGAGGAAG+AGG + chr3_2:26216158-26216177 Msa0401170:CDS 65.0%
GCGTACGTGCTCTCTGGTCC+TGG - chr3_2:26216494-26216513 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 26213433 26218437 26213433 ID=Msa0401170;Name=Msa0401170
chr3_2 mRNA 26213433 26218437 26213433 ID=Msa0401170-mRNA-1;Parent=Msa0401170;Name=Msa0401170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=1481|0.87|0.88|1|0.5|0.44|9|201|403
chr3_2 exon 26213433 26213852 26213433 ID=Msa0401170-mRNA-1:exon:5495;Parent=Msa0401170-mRNA-1
chr3_2 exon 26213970 26214033 26213970 ID=Msa0401170-mRNA-1:exon:5496;Parent=Msa0401170-mRNA-1
chr3_2 exon 26214596 26215592 26214596 ID=Msa0401170-mRNA-1:exon:5497;Parent=Msa0401170-mRNA-1
chr3_2 exon 26216143 26216507 26216143 ID=Msa0401170-mRNA-1:exon:5498;Parent=Msa0401170-mRNA-1
chr3_2 exon 26216590 26216680 26216590 ID=Msa0401170-mRNA-1:exon:5499;Parent=Msa0401170-mRNA-1
chr3_2 exon 26216859 26217134 26216859 ID=Msa0401170-mRNA-1:exon:5500;Parent=Msa0401170-mRNA-1
chr3_2 exon 26217222 26217329 26217222 ID=Msa0401170-mRNA-1:exon:5501;Parent=Msa0401170-mRNA-1
chr3_2 exon 26217836 26218332 26217836 ID=Msa0401170-mRNA-1:exon:5502;Parent=Msa0401170-mRNA-1
chr3_2 exon 26218362 26218437 26218362 ID=Msa0401170-mRNA-1:exon:5503;Parent=Msa0401170-mRNA-1
chr3_2 five_prime_UTR 26213433 26213852 26213433 ID=Msa0401170-mRNA-1:five_prime_utr;Parent=Msa0401170-mRNA-1
chr3_2 five_prime_UTR 26213970 26214033 26213970 ID=Msa0401170-mRNA-1:five_prime_utr;Parent=Msa0401170-mRNA-1
chr3_2 five_prime_UTR 26214596 26215592 26214596 ID=Msa0401170-mRNA-1:five_prime_utr;Parent=Msa0401170-mRNA-1
chr3_2 CDS 26216143 26216507 26216143 ID=Msa0401170-mRNA-1:cds;Parent=Msa0401170-mRNA-1
chr3_2 CDS 26216590 26216680 26216590 ID=Msa0401170-mRNA-1:cds;Parent=Msa0401170-mRNA-1
chr3_2 CDS 26216859 26217134 26216859 ID=Msa0401170-mRNA-1:cds;Parent=Msa0401170-mRNA-1
chr3_2 CDS 26217222 26217329 26217222 ID=Msa0401170-mRNA-1:cds;Parent=Msa0401170-mRNA-1
chr3_2 CDS 26217836 26218207 26217836 ID=Msa0401170-mRNA-1:cds;Parent=Msa0401170-mRNA-1
chr3_2 three_prime_UTR 26218208 26218332 26218208 ID=Msa0401170-mRNA-1:three_prime_utr;Parent=Msa0401170-mRNA-1
chr3_2 three_prime_UTR 26218362 26218437 26218362 ID=Msa0401170-mRNA-1:three_prime_utr;Parent=Msa0401170-mRNA-1
Gene Sequence

>Msa0401170

ATGGCAGGAAATGATACTCCGACGGGTGGAGGAAGAGGTACTGGTAGAGGTATCATTAGAGGTAAGAGAGTTAGGGGTACCACACTTTCATCTGGAAGAGGTATGACTGCCACTACTCCATCACACTCTATTGTTGGGCAAGCAACAAATCCTTCCATATCTCATACAACAACAAATACACAACTTCCCCACTCTACTCCTAGCCCATCTATTTCTCAATCACCAAGCTCGCCACAAATCCCATCAACTAATGCATCTGGTGCTGATTCACATGTATCATCAAATGATATGGATTCATCTCCAAACATTGGGAGTGAGGACCCTCTTGATGAGCGTATTTGGATTCGTCCAGGACCAGAGAGCACGTTTGACCCTGCTATTGCACCTACACGTGCGATAACAAAAATTATGAAGCAAAAGTTTGATGGATGTTGGACAACGTATGGAGAACTAAAGAGGAAGTTTAAGTGGCTACCTGAACTTGATGGAGAGATTAAGAAGTCATTTGACCATAAAGCCTCTCAGTTATACTCAAGTGCAATGTATAGGGTCAGAAAAGGGGAAGATGATGGTGATTGGATTCCAGTTGAAATGCGTAAGAAATTGGATGAAAAATGGAGTGAGGATGAATGGAAAAGAAAGGCACAAACTAACAGCGAAAACAGAAAATCTTCTGATGCTCCACTCCACACTGGAGGGTCGATTCCAACATTTGAGATTTCTAAGAGAATAAAAACATCTCCAGAAGTGACTCCAACATGTTGGGAAATATTTCTATACACACACAACTTGAAAGGTGATCCGAGCAAGTGGGTTTCCTCAAAATCAAAGGATATTGCTGATGAGTTTGAAAGAAGGATTATTGAGAGGGATTCACATGAGGAGGCACTAGGGGATGATGTTTCTAGATATGAAAGTGACAACATTATCTTCTTAGATGTTGTTGGAGGAGTAAATAAGAAGGGTCGTATATATGGTTTGGGCCCGGAAGCAGGGAAATATAAGCCGTCTAGATCTTCCAGATCTGACGGCATCTTACAATCTGAATTTGAACAAATGAGGGCTGAAAACGCATCACTTAAAGAGAAATTGAAGGCTCATGAGGAGTTGATTCGTGCATCGCAGGAAGATTCACGTTTTCTTAGGGAGCAAATGACTAAATTGATGGAAATGGTTTCTCAAGGTCATCCACCTCCACCTCCATCTACTTGA
Protein sequence

>Msa0401170

MAGNDTPTGGGRGTGRGIIRGKRVRGTTLSSGRGMTATTPSHSIVGQATNPSISHTTTNTQLPHSTPSPSISQSPSSPQIPSTNASGADSHVSSNDMDSSPNIGSEDPLDERIWIRPGPESTFDPAIAPTRAITKIMKQKFDGCWTTYGELKRKFKWLPELDGEIKKSFDHKASQLYSSAMYRVRKGEDDGDWIPVEMRKKLDEKWSEDEWKRKAQTNSENRKSSDAPLHTGGSIPTFEISKRIKTSPEVTPTCWEIFLYTHNLKGDPSKWVSSKSKDIADEFERRIIERDSHEEALGDDVSRYESDNIIFLDVVGGVNKKGRIYGLGPEAGKYKPSRSSRSDGILQSEFEQMRAENASLKEKLKAHEELIRASQEDSRFLREQMTKLMEMVSQGHPPPPPST*