Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445960 | sp|Q9LRR4|R13L1_ARATH | 36.170 | 188 | 115 | 3 | 6 | 188 | 4 | 191 | 5.73e-31 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445960 | A0A072TPX8 | 98.421 | 190 | 3 | 0 | 1 | 190 | 1 | 190 | 1.27e-121 | 381 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0619180 | Msa1445960 | 0.803668 | 3.123750e-49 | -8.615850e-47 |
| Msa0165900 | Msa1445960 | 0.800160 | 1.642012e-48 | -8.615850e-47 |
| Msa1253810 | Msa1445960 | 0.826250 | 3.007360e-54 | -8.615850e-47 |
| Msa1296300 | Msa1445960 | 0.809359 | 1.967756e-50 | -8.615850e-47 |
| Msa1297600 | Msa1445960 | 0.807026 | 6.179667e-50 | -8.615850e-47 |
| Msa1323990 | Msa1445960 | 0.808668 | 2.765828e-50 | -8.615850e-47 |
| Msa0401170 | Msa1445960 | 0.823278 | 1.509278e-53 | -8.615850e-47 |
| Msa0414020 | Msa1445960 | 0.823062 | 1.695040e-53 | -8.615850e-47 |
| Msa0431770 | Msa1445960 | 0.845763 | 3.314765e-59 | -8.615850e-47 |
| Msa0459700 | Msa1445960 | 0.831730 | 1.414379e-55 | -8.615850e-47 |
| Msa0241740 | Msa1445960 | 0.805295 | 1.430232e-49 | -8.615850e-47 |
| Msa0337510 | Msa1445960 | 0.825607 | 4.275798e-54 | -8.615850e-47 |
| Msa1113590 | Msa1445960 | 0.801188 | 1.013037e-48 | -8.615850e-47 |
| Msa0539050 | Msa1445960 | 0.829077 | 6.296268e-55 | -8.615850e-47 |
| Msa0539060 | Msa1445960 | 0.816798 | 4.593541e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445960 | MtrunA17_Chr8g0348931 | 98.421 | 190 | 3 | 0 | 1 | 190 | 1 | 190 | 2.45e-125 | 381 |
| Msa1445960 | MtrunA17_Chr3g0089431 | 77.895 | 190 | 37 | 1 | 1 | 185 | 1 | 190 | 1.39e-99 | 295 |
| Msa1445960 | MtrunA17_Chr3g0089541 | 78.421 | 190 | 36 | 1 | 1 | 185 | 1 | 190 | 5.08e-94 | 297 |
| Msa1445960 | MtrunA17_Chr3g0089651 | 77.368 | 190 | 38 | 1 | 1 | 185 | 1 | 190 | 2.61e-92 | 293 |
| Msa1445960 | MtrunA17_Chr3g0089991 | 77.368 | 190 | 38 | 1 | 1 | 185 | 1 | 190 | 5.93e-92 | 291 |
| Msa1445960 | MtrunA17_Chr3g0089591 | 74.346 | 191 | 43 | 1 | 1 | 185 | 1 | 191 | 3.15e-88 | 281 |
| Msa1445960 | MtrunA17_Chr3g0091081 | 66.321 | 193 | 62 | 2 | 1 | 191 | 1 | 192 | 3.73e-78 | 253 |
| Msa1445960 | MtrunA17_Chr3g0091041 | 66.321 | 193 | 62 | 2 | 1 | 191 | 1 | 192 | 5.88e-74 | 231 |
| Msa1445960 | MtrunA17_Chr3g0089781 | 63.731 | 193 | 67 | 2 | 1 | 191 | 1 | 192 | 1.24e-72 | 236 |
| Msa1445960 | MtrunA17_Chr3g0087841 | 62.304 | 191 | 69 | 2 | 1 | 189 | 1 | 190 | 8.80e-72 | 235 |
| Msa1445960 | MtrunA17_Chr3g0091061 | 66.321 | 193 | 62 | 2 | 1 | 191 | 1 | 192 | 8.33e-71 | 232 |
| Msa1445960 | MtrunA17_Chr3g0090691 | 65.803 | 193 | 63 | 2 | 1 | 191 | 1 | 192 | 1.91e-70 | 231 |
| Msa1445960 | MtrunA17_Chr3g0092241 | 63.636 | 187 | 65 | 2 | 1 | 185 | 1 | 186 | 2.71e-70 | 230 |
| Msa1445960 | MtrunA17_Chr3g0089871 | 63.684 | 190 | 62 | 2 | 1 | 190 | 1 | 183 | 1.02e-69 | 229 |
| Msa1445960 | MtrunA17_Chr3g0090651 | 65.803 | 193 | 63 | 2 | 1 | 191 | 1 | 192 | 1.29e-69 | 228 |
| Msa1445960 | MtrunA17_Chr4g0025391 | 63.158 | 190 | 62 | 2 | 1 | 190 | 1 | 182 | 1.36e-69 | 229 |
| Msa1445960 | MtrunA17_Chr6g0484551 | 61.538 | 195 | 70 | 3 | 1 | 191 | 1 | 194 | 1.43e-69 | 226 |
| Msa1445960 | MtrunA17_Chr2g0309721 | 63.298 | 188 | 66 | 2 | 1 | 186 | 1 | 187 | 2.00e-68 | 226 |
| Msa1445960 | MtrunA17_Chr3g0089211 | 60.963 | 187 | 70 | 2 | 1 | 185 | 48 | 233 | 7.16e-68 | 224 |
| Msa1445960 | MtrunA17_Chr3g0089251 | 60.963 | 187 | 70 | 2 | 1 | 185 | 30 | 215 | 8.48e-68 | 224 |
| Msa1445960 | MtrunA17_Chr3g0089811 | 62.032 | 187 | 68 | 2 | 1 | 185 | 1 | 186 | 1.46e-67 | 223 |
| Msa1445960 | MtrunA17_Chr3g0089961 | 61.497 | 187 | 69 | 2 | 1 | 185 | 1 | 186 | 2.02e-67 | 221 |
| Msa1445960 | MtrunA17_Chr3g0089471 | 58.947 | 190 | 76 | 1 | 1 | 188 | 1 | 190 | 1.02e-66 | 221 |
| Msa1445960 | MtrunA17_Chr3g0090141 | 61.780 | 191 | 70 | 2 | 1 | 189 | 1 | 190 | 5.47e-66 | 219 |
| Msa1445960 | MtrunA17_Chr3g0089421 | 61.828 | 186 | 69 | 2 | 1 | 185 | 1 | 185 | 8.08e-66 | 218 |
| Msa1445960 | MtrunA17_Chr3g0089501 | 60.526 | 190 | 72 | 2 | 4 | 191 | 2 | 190 | 2.74e-65 | 215 |
| Msa1445960 | MtrunA17_Chr3g0089911 | 60.526 | 190 | 67 | 2 | 1 | 190 | 1 | 182 | 5.49e-65 | 211 |
| Msa1445960 | MtrunA17_Chr3g0089601 | 60.000 | 190 | 73 | 2 | 4 | 191 | 2 | 190 | 6.30e-65 | 214 |
| Msa1445960 | MtrunA17_Chr3g0092261 | 60.000 | 190 | 68 | 2 | 1 | 190 | 46 | 227 | 1.55e-64 | 214 |
| Msa1445960 | MtrunA17_Chr3g0090371 | 59.585 | 193 | 75 | 2 | 1 | 191 | 1 | 192 | 7.11e-64 | 213 |
| Msa1445960 | MtrunA17_Chr3g0090401 | 58.549 | 193 | 77 | 2 | 1 | 191 | 212 | 403 | 2.65e-62 | 208 |
| Msa1445960 | MtrunA17_Chr3g0089761 | 63.212 | 193 | 68 | 3 | 1 | 191 | 1 | 192 | 1.84e-61 | 206 |
| Msa1445960 | MtrunA17_Chr3g0089931 | 54.737 | 190 | 64 | 2 | 1 | 190 | 1 | 168 | 1.64e-57 | 189 |
| Msa1445960 | MtrunA17_Chr8g0392521 | 53.723 | 188 | 50 | 3 | 1 | 186 | 1 | 153 | 5.92e-57 | 182 |
| Msa1445960 | MtrunA17_Chr7g0248531 | 52.128 | 188 | 79 | 3 | 7 | 192 | 5 | 183 | 1.17e-48 | 169 |
| Msa1445960 | MtrunA17_Chr3g0082381 | 43.750 | 192 | 100 | 4 | 3 | 188 | 2 | 191 | 3.18e-43 | 147 |
| Msa1445960 | MtrunA17_Chr1g0147141 | 46.995 | 183 | 79 | 4 | 4 | 185 | 17 | 182 | 4.43e-41 | 147 |
| Msa1445960 | MtrunA17_Chr8g0352831 | 38.191 | 199 | 109 | 3 | 1 | 186 | 1 | 198 | 6.44e-38 | 138 |
| Msa1445960 | MtrunA17_Chr3g0082321 | 42.932 | 191 | 102 | 5 | 3 | 189 | 2 | 189 | 2.12e-37 | 137 |
| Msa1445960 | MtrunA17_Chr3g0082131 | 41.969 | 193 | 108 | 2 | 4 | 192 | 2 | 194 | 3.19e-37 | 136 |
| Msa1445960 | MtrunA17_Chr8g0352861 | 36.500 | 200 | 117 | 3 | 1 | 191 | 1 | 199 | 2.70e-36 | 134 |
| Msa1445960 | MtrunA17_Chr3g0082391 | 41.489 | 188 | 104 | 4 | 3 | 186 | 2 | 187 | 1.73e-35 | 131 |
| Msa1445960 | MtrunA17_Chr3g0082351 | 38.710 | 186 | 110 | 3 | 3 | 186 | 2 | 185 | 1.91e-34 | 128 |
| Msa1445960 | MtrunA17_Chr1g0164631 | 41.848 | 184 | 96 | 2 | 3 | 184 | 2 | 176 | 2.80e-34 | 128 |
| Msa1445960 | MtrunA17_Chr3g0082101 | 42.697 | 178 | 98 | 3 | 1 | 174 | 1 | 178 | 3.70e-31 | 119 |
| Msa1445960 | MtrunA17_Chr3g0082311 | 42.045 | 176 | 91 | 6 | 21 | 188 | 20 | 192 | 1.67e-30 | 117 |
| Msa1445960 | MtrunA17_Chr1g0164611 | 42.697 | 178 | 98 | 3 | 1 | 174 | 1 | 178 | 3.31e-30 | 116 |
| Msa1445960 | MtrunA17_Chr4g0020391 | 33.898 | 177 | 112 | 4 | 8 | 180 | 6 | 181 | 3.39e-29 | 107 |
| Msa1445960 | MtrunA17_Chr1g0164391 | 40.588 | 170 | 94 | 5 | 21 | 186 | 20 | 186 | 5.43e-28 | 110 |
| Msa1445960 | MtrunA17_Chr2g0282991 | 38.202 | 178 | 104 | 4 | 1 | 176 | 1 | 174 | 1.04e-27 | 109 |
| Msa1445960 | MtrunA17_Chr3g0084971 | 36.041 | 197 | 114 | 3 | 1 | 194 | 1 | 188 | 2.04e-27 | 108 |
| Msa1445960 | MtrunA17_Chr5g0446611 | 36.216 | 185 | 107 | 4 | 1 | 179 | 1 | 180 | 3.96e-27 | 107 |
| Msa1445960 | MtrunA17_Chr3g0086221 | 31.915 | 188 | 106 | 3 | 3 | 186 | 2 | 171 | 7.71e-27 | 106 |
| Msa1445960 | MtrunA17_Chr3g0084031 | 33.846 | 195 | 118 | 4 | 5 | 191 | 6 | 197 | 9.63e-27 | 106 |
| Msa1445960 | MtrunA17_Chr3g0084051 | 34.375 | 192 | 115 | 4 | 3 | 186 | 2 | 190 | 9.81e-27 | 106 |
| Msa1445960 | MtrunA17_Chr3g0084081 | 31.980 | 197 | 123 | 4 | 3 | 191 | 2 | 195 | 1.31e-26 | 106 |
| Msa1445960 | MtrunA17_Chr2g0282981 | 36.872 | 179 | 105 | 4 | 1 | 176 | 1 | 174 | 3.06e-26 | 103 |
| Msa1445960 | MtrunA17_Chr3g0085471 | 33.679 | 193 | 115 | 4 | 3 | 186 | 2 | 190 | 1.11e-25 | 103 |
| Msa1445960 | MtrunA17_Chr1g0169901 | 31.892 | 185 | 117 | 3 | 1 | 185 | 1 | 176 | 1.96e-25 | 102 |
| Msa1445960 | MtrunA17_Chr1g0164581 | 41.611 | 149 | 83 | 2 | 4 | 148 | 2 | 150 | 2.21e-24 | 99.8 |
| Msa1445960 | MtrunA17_Chr3g0085091 | 33.161 | 193 | 104 | 4 | 1 | 186 | 1 | 175 | 1.12e-23 | 97.8 |
| Msa1445960 | MtrunA17_Chr7g0221481 | 32.124 | 193 | 102 | 5 | 3 | 185 | 2 | 175 | 1.55e-23 | 97.4 |
| Msa1445960 | MtrunA17_Chr3g0086161 | 30.688 | 189 | 108 | 3 | 3 | 186 | 2 | 172 | 6.85e-23 | 95.5 |
| Msa1445960 | MtrunA17_Chr3g0085501 | 32.812 | 192 | 114 | 4 | 3 | 184 | 2 | 188 | 9.36e-23 | 95.1 |
| Msa1445960 | MtrunA17_Chr3g0085331 | 32.632 | 190 | 117 | 4 | 3 | 184 | 2 | 188 | 1.03e-22 | 95.1 |
| Msa1445960 | MtrunA17_Chr3g0084061 | 28.646 | 192 | 116 | 2 | 3 | 186 | 2 | 180 | 2.44e-22 | 94.0 |
| Msa1445960 | MtrunA17_Chr3g0085131 | 33.862 | 189 | 105 | 5 | 1 | 186 | 1 | 172 | 2.68e-22 | 94.0 |
| Msa1445960 | MtrunA17_Chr3g0091011 | 32.461 | 191 | 106 | 4 | 1 | 186 | 1 | 173 | 2.92e-22 | 93.6 |
| Msa1445960 | MtrunA17_Chr3g0082791 | 33.503 | 197 | 118 | 4 | 3 | 191 | 4 | 195 | 3.10e-22 | 93.6 |
| Msa1445960 | MtrunA17_Chr3g0087701 | 32.461 | 191 | 104 | 3 | 3 | 186 | 2 | 174 | 9.71e-22 | 92.0 |
| Msa1445960 | MtrunA17_Chr3g0086151 | 30.159 | 189 | 109 | 3 | 3 | 186 | 2 | 172 | 2.20e-21 | 91.3 |
| Msa1445960 | MtrunA17_Chr3g0085561 | 32.240 | 183 | 98 | 4 | 3 | 185 | 2 | 158 | 4.10e-21 | 90.5 |
| Msa1445960 | MtrunA17_Chr3g0086181 | 30.159 | 189 | 109 | 3 | 3 | 186 | 2 | 172 | 4.56e-21 | 90.1 |
| Msa1445960 | MtrunA17_Chr4g0020501 | 34.286 | 140 | 89 | 3 | 48 | 185 | 3 | 141 | 5.39e-21 | 90.1 |
| Msa1445960 | MtrunA17_Chr3g0086621 | 29.787 | 188 | 109 | 3 | 3 | 185 | 2 | 171 | 8.75e-21 | 89.4 |
| Msa1445960 | MtrunA17_Chr3g0085451 | 30.928 | 194 | 109 | 3 | 3 | 194 | 2 | 172 | 1.48e-20 | 88.6 |
| Msa1445960 | MtrunA17_Chr3g0087541 | 32.836 | 201 | 124 | 6 | 3 | 194 | 2 | 200 | 3.11e-20 | 87.8 |
| Msa1445960 | MtrunA17_Chr3g0085801 | 31.034 | 203 | 127 | 5 | 3 | 194 | 2 | 202 | 4.47e-20 | 87.4 |
| Msa1445960 | MtrunA17_Chr3g0087581 | 32.461 | 191 | 103 | 5 | 3 | 185 | 2 | 174 | 3.59e-19 | 84.7 |
| Msa1445960 | MtrunA17_Chr2g0299151 | 30.319 | 188 | 107 | 4 | 1 | 183 | 1 | 169 | 3.76e-19 | 84.7 |
| Msa1445960 | MtrunA17_Chr3g0085721 | 30.000 | 190 | 99 | 3 | 3 | 187 | 2 | 162 | 5.18e-19 | 83.6 |
| Msa1445960 | MtrunA17_Chr3g0085111 | 31.016 | 187 | 110 | 5 | 1 | 185 | 1 | 170 | 1.29e-18 | 83.2 |
| Msa1445960 | MtrunA17_Chr3g0113791 | 28.342 | 187 | 114 | 4 | 4 | 186 | 2 | 172 | 1.45e-18 | 83.2 |
| Msa1445960 | MtrunA17_Chr3g0085651 | 30.366 | 191 | 113 | 5 | 3 | 185 | 2 | 180 | 1.74e-18 | 82.8 |
| Msa1445960 | MtrunA17_Chr3g0113481 | 28.108 | 185 | 117 | 3 | 4 | 186 | 2 | 172 | 1.98e-18 | 82.4 |
| Msa1445960 | MtrunA17_Chr3g0084811 | 32.524 | 206 | 102 | 7 | 11 | 188 | 147 | 343 | 7.02e-18 | 80.9 |
| Msa1445960 | MtrunA17_Chr3g0085701 | 31.122 | 196 | 101 | 5 | 1 | 186 | 1 | 172 | 1.13e-17 | 80.5 |
| Msa1445960 | MtrunA17_Chr3g0091971 | 35.714 | 182 | 100 | 6 | 15 | 194 | 7 | 173 | 1.41e-17 | 80.1 |
| Msa1445960 | MtrunA17_Chr3g0085171 | 29.444 | 180 | 102 | 5 | 9 | 186 | 2 | 158 | 3.95e-17 | 79.0 |
| Msa1445960 | MtrunA17_Chr2g0299101 | 31.522 | 184 | 103 | 5 | 7 | 179 | 7 | 178 | 4.30e-17 | 78.6 |
| Msa1445960 | MtrunA17_Chr2g0299121 | 32.632 | 190 | 105 | 6 | 7 | 185 | 7 | 184 | 8.56e-17 | 77.8 |
| Msa1445960 | MtrunA17_Chr3g0085751 | 29.891 | 184 | 110 | 5 | 5 | 186 | 1 | 167 | 2.58e-16 | 76.6 |
| Msa1445960 | MtrunA17_Chr3g0090431 | 55.385 | 65 | 28 | 1 | 127 | 191 | 1 | 64 | 4.36e-16 | 75.9 |
| Msa1445960 | MtrunA17_Chr3g0085521 | 29.189 | 185 | 110 | 5 | 3 | 186 | 2 | 166 | 8.26e-16 | 75.1 |
| Msa1445960 | MtrunA17_Chr1g0168901 | 29.310 | 174 | 100 | 3 | 11 | 184 | 10 | 160 | 3.78e-15 | 73.2 |
| Msa1445960 | MtrunA17_Chr3g0083751 | 31.737 | 167 | 92 | 4 | 11 | 175 | 12 | 158 | 8.73e-15 | 72.0 |
| Msa1445960 | MtrunA17_Chr3g0086741 | 28.505 | 214 | 106 | 7 | 3 | 186 | 2 | 198 | 9.90e-15 | 72.0 |
| Msa1445960 | MtrunA17_Chr3g0083681 | 32.222 | 180 | 104 | 5 | 11 | 188 | 10 | 173 | 1.03e-14 | 72.0 |
| Msa1445960 | MtrunA17_Chr4g0051651 | 28.643 | 199 | 122 | 5 | 11 | 193 | 24 | 218 | 8.66e-14 | 68.9 |
| Msa1445960 | MtrunA17_Chr3g0083641 | 32.961 | 179 | 102 | 7 | 11 | 188 | 10 | 171 | 1.24e-13 | 68.6 |
| Msa1445960 | MtrunA17_Chr3g0080871 | 30.899 | 178 | 106 | 4 | 11 | 185 | 12 | 175 | 1.25e-13 | 68.6 |
| Msa1445960 | MtrunA17_Chr3g0083621 | 30.256 | 195 | 107 | 7 | 11 | 194 | 14 | 190 | 3.63e-13 | 67.4 |
| Msa1445960 | MtrunA17_Chr5g0430951 | 27.273 | 198 | 119 | 5 | 1 | 193 | 1 | 178 | 1.69e-12 | 65.5 |
| Msa1445960 | MtrunA17_Chr8g0337891 | 29.825 | 171 | 115 | 3 | 17 | 183 | 12 | 181 | 2.79e-12 | 64.7 |
| Msa1445960 | MtrunA17_Chr2g0299091 | 31.757 | 148 | 92 | 4 | 46 | 185 | 12 | 158 | 3.18e-12 | 64.7 |
| Msa1445960 | MtrunA17_Chr7g0248431 | 30.065 | 153 | 101 | 3 | 41 | 188 | 35 | 186 | 7.14e-12 | 63.5 |
| Msa1445960 | MtrunA17_Chr8g0352211 | 28.962 | 183 | 118 | 5 | 13 | 188 | 1008 | 1185 | 1.03e-11 | 63.2 |
| Msa1445960 | MtrunA17_Chr7g0248221 | 30.719 | 153 | 100 | 3 | 41 | 188 | 35 | 186 | 1.13e-11 | 62.8 |
| Msa1445960 | MtrunA17_Chr5g0430721 | 28.283 | 198 | 117 | 6 | 1 | 193 | 42 | 219 | 1.27e-11 | 62.8 |
| Msa1445960 | MtrunA17_Chr8g0338391 | 28.488 | 172 | 115 | 4 | 17 | 183 | 12 | 180 | 1.53e-11 | 62.4 |
| Msa1445960 | MtrunA17_Chr5g0430641 | 26.768 | 198 | 120 | 5 | 1 | 193 | 1 | 178 | 1.54e-11 | 62.4 |
| Msa1445960 | MtrunA17_Chr5g0414231 | 30.061 | 163 | 98 | 5 | 41 | 191 | 31 | 189 | 1.82e-11 | 62.0 |
| Msa1445960 | MtrunA17_Chr6g0470061 | 28.481 | 158 | 94 | 5 | 38 | 187 | 28 | 174 | 2.11e-11 | 60.5 |
| Msa1445960 | MtrunA17_Chr7g0218941 | 28.333 | 180 | 123 | 4 | 17 | 191 | 12 | 190 | 2.78e-11 | 62.0 |
| Msa1445960 | MtrunA17_Chr5g0430441 | 25.126 | 199 | 122 | 5 | 1 | 193 | 1 | 178 | 3.60e-11 | 61.6 |
| Msa1445960 | MtrunA17_Chr8g0338621 | 28.977 | 176 | 119 | 4 | 13 | 183 | 8 | 182 | 6.76e-11 | 60.5 |
| Msa1445960 | MtrunA17_Chr3g0087301 | 29.375 | 160 | 93 | 5 | 41 | 186 | 31 | 184 | 7.86e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445960 | AT3G14470.1 | 36.170 | 188 | 115 | 3 | 6 | 188 | 4 | 191 | 5.83e-32 | 122 |
| Msa1445960 | AT3G14470.2 | 36.170 | 188 | 115 | 3 | 6 | 188 | 4 | 191 | 5.83e-32 | 122 |
| Msa1445960 | AT3G14460.1 | 27.128 | 188 | 127 | 4 | 6 | 186 | 1 | 185 | 9.66e-16 | 75.1 |
Find 37 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGCCATTGTTTGATTT+TGG | 0.058338 | tig0031256:-3141 | None:intergenic |
| TTGAAGTTAGTTTGTCCATT+AGG | 0.258877 | tig0031256:-2995 | None:intergenic |
| GAAACATTACAGATCAGTTT+TGG | 0.301348 | tig0031256:+3255 | Msa1445960:CDS |
| TGAAGTTAGTTTGTCCATTA+GGG | 0.336387 | tig0031256:-2994 | None:intergenic |
| CTTTCAACTCAAAATTCAAA+TGG | 0.341546 | tig0031256:+3284 | Msa1445960:CDS |
| TGAATCATTGATGGAAGAAA+TGG | 0.350819 | tig0031256:+3055 | Msa1445960:CDS |
| TACCGCAGATATAATAATTT+AGG | 0.383674 | tig0031256:+3508 | Msa1445960:CDS |
| CAAGTTGAATGAATCATTGA+TGG | 0.385520 | tig0031256:+3046 | Msa1445960:CDS |
| AAATGGAGAAGATATGTAAA+AGG | 0.394125 | tig0031256:+3321 | Msa1445960:CDS |
| TGCTTCAGTTCAAACCCTAA+TGG | 0.406340 | tig0031256:+2980 | Msa1445960:CDS |
| GAGATGGCTGCAGCTTTGAT+TGG | 0.407025 | tig0031256:+2942 | None:intergenic |
| TGTCCAGCAGAGTAACATCT+TGG | 0.417634 | tig0031256:+3355 | Msa1445960:CDS |
| CATCAATGATTCATTCAACT+TGG | 0.422350 | tig0031256:-3045 | None:intergenic |
| TGGAGAGAGCAATTCTGAAA+TGG | 0.432436 | tig0031256:+3304 | Msa1445960:CDS |
| TCGTAGAACACCGTCAAGTT+CGG | 0.434756 | tig0031256:+3409 | Msa1445960:CDS |
| GTCCAGCAGAGTAACATCTT+GGG | 0.476209 | tig0031256:+3356 | Msa1445960:CDS |
| AGCCCAAGATGTTACTCTGC+TGG | 0.479592 | tig0031256:-3358 | None:intergenic |
| AAATCAAACAATGGCTTGAT+CGG | 0.503382 | tig0031256:+3144 | Msa1445960:CDS |
| CTTCTCTACCTTGCATCGCA+AGG | 0.505869 | tig0031256:-3222 | None:intergenic |
| TCATTCACCACCGAACTTGA+CGG | 0.506361 | tig0031256:-3419 | None:intergenic |
| AGATAGACTCCTTGATGTGT+TGG | 0.528058 | tig0031256:+3472 | Msa1445960:CDS |
| ATGGCTGCAGCTTTGATTGG+AGG | 0.539105 | tig0031256:+2945 | Msa1445960:CDS |
| GGCTTGCAAAGAGCTGTAAG+AGG | 0.542823 | tig0031256:+3377 | Msa1445960:CDS |
| GCAAAGAGCTGTAAGAGGTA+GGG | 0.556432 | tig0031256:+3382 | Msa1445960:CDS |
| CTACGATGCCTTGCGATGCA+AGG | 0.563467 | tig0031256:+3214 | Msa1445960:CDS |
| TGCAAAGAGCTGTAAGAGGT+AGG | 0.576124 | tig0031256:+3381 | Msa1445960:CDS |
| AGTCTGATACCAACACATCA+AGG | 0.596623 | tig0031256:-3481 | None:intergenic |
| AGATGCAATCTTTGATGCTG+AGG | 0.604070 | tig0031256:+3172 | Msa1445960:CDS |
| CACCTAAATTATTATATCTG+CGG | 0.604110 | tig0031256:-3510 | None:intergenic |
| TTCAACCCAAAATCAAACAA+TGG | 0.612891 | tig0031256:+3135 | Msa1445960:CDS |
| TAGAACACCGTCAAGTTCGG+TGG | 0.618997 | tig0031256:+3412 | Msa1445960:CDS |
| ATGAATCTGTCATGGTGGGA+AGG | 0.629877 | tig0031256:+3438 | Msa1445960:CDS |
| AAGGTAGAGAAGAAACAAGA+TGG | 0.636002 | tig0031256:+3233 | Msa1445960:CDS |
| GGTGGTGAATGAATCTGTCA+TGG | 0.638124 | tig0031256:+3430 | Msa1445960:CDS |
| GTGAATGAATCTGTCATGGT+GGG | 0.647169 | tig0031256:+3434 | Msa1445960:CDS |
| GATGTGTTGGTATCAGACTG+TGG | 0.711195 | tig0031256:+3485 | Msa1445960:CDS |
| GGTGAATGAATCTGTCATGG+TGG | 0.719735 | tig0031256:+3433 | Msa1445960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTTTCAACTCAAAATTCAAA+TGG | + | tig0031256:3284-3303 | Msa1445960:CDS | 25.0% |
| ! | AAATGGAGAAGATATGTAAA+AGG | + | tig0031256:3321-3340 | Msa1445960:CDS | 25.0% |
| !! | TGAAGTTAGTTTGTCCATTA+GGG | - | tig0031256:2997-3016 | None:intergenic | 30.0% |
| !! | TTGAAGTTAGTTTGTCCATT+AGG | - | tig0031256:2998-3017 | None:intergenic | 30.0% |
| CATCAATGATTCATTCAACT+TGG | - | tig0031256:3048-3067 | None:intergenic | 30.0% | |
| ! | CAAGTTGAATGAATCATTGA+TGG | + | tig0031256:3046-3065 | Msa1445960:CDS | 30.0% |
| TGAATCATTGATGGAAGAAA+TGG | + | tig0031256:3055-3074 | Msa1445960:CDS | 30.0% | |
| !!! | ATTGTTTGATTTTGGGTTGA+AGG | - | tig0031256:3136-3155 | None:intergenic | 30.0% |
| TTCAACCCAAAATCAAACAA+TGG | + | tig0031256:3135-3154 | Msa1445960:CDS | 30.0% | |
| !! | TCAAGCCATTGTTTGATTTT+GGG | - | tig0031256:3143-3162 | None:intergenic | 30.0% |
| !! | ATCAAGCCATTGTTTGATTT+TGG | - | tig0031256:3144-3163 | None:intergenic | 30.0% |
| AAATCAAACAATGGCTTGAT+CGG | + | tig0031256:3144-3163 | Msa1445960:CDS | 30.0% | |
| ! | GAAACATTACAGATCAGTTT+TGG | + | tig0031256:3255-3274 | Msa1445960:CDS | 30.0% |
| AAGGTAGAGAAGAAACAAGA+TGG | + | tig0031256:3233-3252 | Msa1445960:CDS | 35.0% | |
| TGCTTCAGTTCAAACCCTAA+TGG | + | tig0031256:2980-2999 | Msa1445960:CDS | 40.0% | |
| AGATGCAATCTTTGATGCTG+AGG | + | tig0031256:3172-3191 | Msa1445960:CDS | 40.0% | |
| ! | TGGAGAGAGCAATTCTGAAA+TGG | + | tig0031256:3304-3323 | Msa1445960:CDS | 40.0% |
| GTGAATGAATCTGTCATGGT+GGG | + | tig0031256:3434-3453 | Msa1445960:CDS | 40.0% | |
| AGATAGACTCCTTGATGTGT+TGG | + | tig0031256:3472-3491 | Msa1445960:CDS | 40.0% | |
| AGTCTGATACCAACACATCA+AGG | - | tig0031256:3484-3503 | None:intergenic | 40.0% | |
| TGTCCAGCAGAGTAACATCT+TGG | + | tig0031256:3355-3374 | Msa1445960:CDS | 45.0% | |
| GTCCAGCAGAGTAACATCTT+GGG | + | tig0031256:3356-3375 | Msa1445960:CDS | 45.0% | |
| TGCAAAGAGCTGTAAGAGGT+AGG | + | tig0031256:3381-3400 | Msa1445960:CDS | 45.0% | |
| GCAAAGAGCTGTAAGAGGTA+GGG | + | tig0031256:3382-3401 | Msa1445960:CDS | 45.0% | |
| TCGTAGAACACCGTCAAGTT+CGG | + | tig0031256:3409-3428 | Msa1445960:CDS | 45.0% | |
| TCATTCACCACCGAACTTGA+CGG | - | tig0031256:3422-3441 | None:intergenic | 45.0% | |
| GGTGGTGAATGAATCTGTCA+TGG | + | tig0031256:3430-3449 | Msa1445960:CDS | 45.0% | |
| GGTGAATGAATCTGTCATGG+TGG | + | tig0031256:3433-3452 | Msa1445960:CDS | 45.0% | |
| ! | ATGAATCTGTCATGGTGGGA+AGG | + | tig0031256:3438-3457 | Msa1445960:CDS | 45.0% |
| ! | GATGTGTTGGTATCAGACTG+TGG | + | tig0031256:3485-3504 | Msa1445960:CDS | 45.0% |
| ! | ATGGCTGCAGCTTTGATTGG+AGG | + | tig0031256:2945-2964 | Msa1445960:CDS | 50.0% |
| CTTCTCTACCTTGCATCGCA+AGG | - | tig0031256:3225-3244 | None:intergenic | 50.0% | |
| AGCCCAAGATGTTACTCTGC+TGG | - | tig0031256:3361-3380 | None:intergenic | 50.0% | |
| GGCTTGCAAAGAGCTGTAAG+AGG | + | tig0031256:3377-3396 | Msa1445960:CDS | 50.0% | |
| TAGAACACCGTCAAGTTCGG+TGG | + | tig0031256:3412-3431 | Msa1445960:CDS | 50.0% | |
| CTACGATGCCTTGCGATGCA+AGG | + | tig0031256:3214-3233 | Msa1445960:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031256 | gene | 2945 | 3529 | 2945 | ID=Msa1445960;Name=Msa1445960 |
| tig0031256 | mRNA | 2945 | 3529 | 2945 | ID=Msa1445960-mRNA-1;Parent=Msa1445960;Name=Msa1445960-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|194 |
| tig0031256 | exon | 2945 | 3529 | 2945 | ID=Msa1445960-mRNA-1:exon:15249;Parent=Msa1445960-mRNA-1 |
| tig0031256 | CDS | 2945 | 3529 | 2945 | ID=Msa1445960-mRNA-1:cds;Parent=Msa1445960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
